Query 024451
Match_columns 267
No_of_seqs 170 out of 1793
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 08:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_a 40S ribosomal protein R 100.0 1.4E-48 4.8E-53 323.7 29.6 267 1-267 112-380 (380)
2 2ynn_A Coatomer subunit beta'; 100.0 1.1E-43 3.8E-48 285.7 32.7 240 2-263 18-260 (304)
3 1got_B GT-beta; complex (GTP-b 100.0 1.7E-42 5.9E-47 283.0 33.4 239 2-259 102-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 6E-42 2.1E-46 281.3 34.9 244 1-259 110-354 (354)
5 4gqb_B Methylosome protein 50; 100.0 4.4E-42 1.5E-46 280.8 32.4 240 2-262 87-331 (344)
6 1vyh_C Platelet-activating fac 100.0 6.8E-42 2.3E-46 286.3 31.8 237 2-262 113-369 (410)
7 1vyh_C Platelet-activating fac 100.0 1.3E-41 4.3E-46 284.6 31.8 235 2-260 155-409 (410)
8 2pm7_B Protein transport prote 100.0 2.5E-41 8.6E-46 271.1 31.5 248 2-261 14-284 (297)
9 3ow8_A WD repeat-containing pr 100.0 3.9E-41 1.3E-45 272.9 31.9 235 2-260 85-319 (321)
10 3ow8_A WD repeat-containing pr 100.0 3.3E-41 1.1E-45 273.3 31.1 240 2-263 37-280 (321)
11 1got_B GT-beta; complex (GTP-b 100.0 6.3E-40 2.1E-44 267.8 34.5 242 2-262 60-301 (340)
12 4g56_B MGC81050 protein; prote 100.0 1.4E-40 4.7E-45 273.5 30.0 241 2-262 99-343 (357)
13 3frx_A Guanine nucleotide-bind 100.0 5.4E-40 1.9E-44 265.9 32.9 238 2-261 70-316 (319)
14 4gqb_B Methylosome protein 50; 100.0 6.5E-41 2.2E-45 273.9 27.4 248 2-262 35-289 (344)
15 1erj_A Transcriptional repress 100.0 7.4E-40 2.5E-44 272.5 31.8 243 2-263 128-390 (393)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-40 1.8E-44 268.8 30.5 255 2-266 66-339 (345)
17 3bg1_A Protein SEC13 homolog; 100.0 5.8E-41 2E-45 271.3 23.8 248 2-261 18-292 (316)
18 2ynn_A Coatomer subunit beta'; 100.0 2E-39 6.9E-44 260.8 31.7 238 2-262 60-302 (304)
19 2hes_X YDR267CP; beta-propelle 100.0 1.5E-39 5.2E-44 264.5 31.3 250 2-262 63-328 (330)
20 4g56_B MGC81050 protein; prote 100.0 5.7E-40 2E-44 269.8 28.1 247 2-263 47-302 (357)
21 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-39 8.8E-44 264.7 30.3 248 2-261 21-282 (345)
22 3frx_A Guanine nucleotide-bind 100.0 6.2E-39 2.1E-43 259.7 31.7 240 2-263 22-268 (319)
23 1nr0_A Actin interacting prote 100.0 4.7E-39 1.6E-43 281.8 32.1 247 2-262 64-355 (611)
24 2xzm_R RACK1; ribosome, transl 100.0 2.1E-38 7.2E-43 259.1 33.3 241 2-261 81-339 (343)
25 2pbi_B Guanine nucleotide-bind 100.0 4.5E-38 1.5E-42 258.2 33.0 243 2-261 69-314 (354)
26 4ery_A WD repeat-containing pr 100.0 8.1E-38 2.8E-42 252.1 33.3 239 2-263 28-269 (312)
27 4ery_A WD repeat-containing pr 100.0 1.3E-37 4.3E-42 251.0 32.7 240 2-261 70-311 (312)
28 2xzm_R RACK1; ribosome, transl 100.0 1.4E-37 5E-42 254.1 32.8 241 2-262 26-285 (343)
29 4aow_A Guanine nucleotide-bind 100.0 4.1E-37 1.4E-41 250.1 35.3 249 2-261 43-336 (340)
30 2hes_X YDR267CP; beta-propelle 100.0 2.2E-37 7.4E-42 251.8 32.3 240 2-261 19-279 (330)
31 3iz6_a 40S ribosomal protein R 100.0 4.8E-39 1.7E-43 266.4 22.5 246 2-261 71-328 (380)
32 1erj_A Transcriptional repress 100.0 6.4E-37 2.2E-41 254.8 33.8 244 2-262 69-341 (393)
33 1nr0_A Actin interacting prote 100.0 3.4E-37 1.2E-41 270.0 32.5 238 2-262 23-270 (611)
34 3dm0_A Maltose-binding peripla 100.0 2.2E-37 7.5E-42 275.0 31.7 243 2-262 435-693 (694)
35 3jrp_A Fusion protein of prote 100.0 2.8E-37 9.5E-42 254.4 30.0 249 2-261 16-286 (379)
36 4e54_B DNA damage-binding prot 100.0 2.4E-38 8.3E-43 266.7 23.9 247 2-262 124-430 (435)
37 2ymu_A WD-40 repeat protein; u 100.0 3.8E-37 1.3E-41 267.5 32.0 229 2-259 349-577 (577)
38 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-38 6.1E-43 272.1 21.4 244 6-261 170-427 (524)
39 3zwl_B Eukaryotic translation 100.0 5.6E-36 1.9E-40 245.6 34.2 242 2-262 37-346 (369)
40 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-36 6.2E-41 246.2 30.7 249 2-262 16-337 (351)
41 3dwl_C Actin-related protein 2 100.0 7.1E-38 2.4E-42 258.5 22.5 245 2-261 16-280 (377)
42 4a11_B DNA excision repair pro 100.0 6.6E-36 2.3E-40 248.5 32.3 256 2-265 48-368 (408)
43 3vl1_A 26S proteasome regulato 100.0 6.3E-37 2.1E-41 256.3 26.1 241 2-263 61-323 (420)
44 4ggc_A P55CDC, cell division c 100.0 9.4E-36 3.2E-40 239.9 31.5 243 2-264 30-317 (318)
45 3dw8_B Serine/threonine-protei 100.0 7.5E-37 2.6E-41 257.6 25.7 255 2-263 33-374 (447)
46 2pm9_A Protein WEB1, protein t 100.0 6.7E-37 2.3E-41 255.6 24.0 250 2-264 72-339 (416)
47 1gxr_A ESG1, transducin-like e 100.0 6.2E-35 2.1E-39 236.7 34.9 240 2-263 56-297 (337)
48 3k26_A Polycomb protein EED; W 100.0 6.6E-37 2.3E-41 251.0 23.4 243 2-261 74-365 (366)
49 1r5m_A SIR4-interacting protei 100.0 2.7E-35 9.3E-40 245.9 33.2 240 2-262 113-425 (425)
50 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-36 4E-41 260.8 25.2 249 2-263 212-518 (524)
51 3dm0_A Maltose-binding peripla 100.0 1E-35 3.5E-40 264.3 32.1 241 2-263 387-633 (694)
52 2ymu_A WD-40 repeat protein; u 100.0 1.8E-35 6.3E-40 256.9 32.7 232 2-262 308-539 (577)
53 4h5i_A Guanine nucleotide-exch 100.0 1.9E-36 6.6E-41 249.5 24.9 235 13-260 98-341 (365)
54 1gxr_A ESG1, transducin-like e 100.0 1.1E-34 3.7E-39 235.2 34.1 234 2-260 102-335 (337)
55 3i2n_A WD repeat-containing pr 100.0 7.5E-36 2.6E-40 244.1 27.2 255 2-266 70-357 (357)
56 4gq1_A NUP37; propeller, trans 100.0 4.7E-37 1.6E-41 255.6 19.4 250 5-266 97-393 (393)
57 3vl1_A 26S proteasome regulato 100.0 5.4E-36 1.9E-40 250.6 25.9 237 3-262 103-365 (420)
58 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-35 7.5E-40 242.8 29.0 241 2-262 13-274 (372)
59 2pm9_A Protein WEB1, protein t 100.0 9E-37 3.1E-41 254.8 21.0 256 2-262 118-414 (416)
60 1k8k_C P40, ARP2/3 complex 41 100.0 8.3E-36 2.8E-40 245.3 25.6 250 2-265 57-364 (372)
61 2xyi_A Probable histone-bindin 100.0 2.9E-35 1E-39 247.5 29.1 255 2-261 133-409 (430)
62 4gga_A P55CDC, cell division c 100.0 7.5E-35 2.6E-39 244.3 31.3 236 2-263 152-396 (420)
63 3v7d_B Cell division control p 100.0 1.1E-34 3.7E-39 246.0 32.5 234 4-264 127-383 (464)
64 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-35 9.3E-40 265.4 30.1 239 2-262 18-259 (814)
65 1sq9_A Antiviral protein SKI8; 100.0 7.1E-35 2.4E-39 242.0 30.0 250 2-264 21-324 (397)
66 3ei3_B DNA damage-binding prot 100.0 4.5E-35 1.5E-39 242.4 28.6 242 2-262 78-339 (383)
67 4aez_A CDC20, WD repeat-contai 100.0 7.3E-35 2.5E-39 242.9 29.9 238 2-264 139-382 (401)
68 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-35 1.3E-39 244.5 27.8 246 3-262 40-299 (402)
69 3i2n_A WD repeat-containing pr 100.0 5.5E-35 1.9E-39 239.0 27.3 243 2-261 23-290 (357)
70 3jro_A Fusion protein of prote 100.0 2.3E-35 7.7E-40 264.0 26.0 251 2-261 14-284 (753)
71 2pm7_B Protein transport prote 100.0 9.4E-35 3.2E-39 232.9 26.8 212 41-262 4-238 (297)
72 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-34 8.4E-39 269.8 33.7 242 2-261 620-912 (1249)
73 1sq9_A Antiviral protein SKI8; 100.0 5.5E-35 1.9E-39 242.6 26.0 255 2-262 67-395 (397)
74 3ei3_B DNA damage-binding prot 100.0 9.6E-35 3.3E-39 240.5 26.9 243 2-262 123-382 (383)
75 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-33 3.6E-38 227.3 31.7 233 2-263 64-297 (313)
76 1yfq_A Cell cycle arrest prote 100.0 1.9E-34 6.4E-39 234.7 25.8 244 2-264 16-284 (342)
77 1r5m_A SIR4-interacting protei 100.0 2.1E-33 7.2E-38 234.4 32.4 243 2-262 50-361 (425)
78 3gre_A Serine/threonine-protei 100.0 2.2E-35 7.4E-40 248.4 19.9 252 2-262 68-359 (437)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-34 7.2E-39 240.1 24.4 249 2-262 86-342 (402)
80 4aez_A CDC20, WD repeat-contai 100.0 1.7E-33 5.9E-38 234.6 29.4 232 5-262 99-336 (401)
81 3dwl_C Actin-related protein 2 100.0 8.6E-35 2.9E-39 240.1 20.9 246 2-260 60-377 (377)
82 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-33 1E-37 224.6 29.0 230 2-263 23-256 (313)
83 3mmy_A MRNA export factor; mRN 100.0 1.5E-33 5.2E-38 231.0 26.9 241 2-259 44-343 (368)
84 4e54_B DNA damage-binding prot 100.0 5.6E-34 1.9E-38 240.0 24.2 212 39-262 112-327 (435)
85 3lrv_A PRE-mRNA-splicing facto 100.0 8.5E-34 2.9E-38 231.7 23.1 237 5-261 44-291 (343)
86 3bg1_A Protein SEC13 homolog; 100.0 4.3E-34 1.5E-38 231.0 21.1 213 40-262 7-247 (316)
87 3v7d_B Cell division control p 100.0 1.5E-32 5.2E-37 232.8 30.7 236 2-262 167-421 (464)
88 4aow_A Guanine nucleotide-bind 100.0 4.8E-33 1.6E-37 226.1 26.5 238 14-264 9-248 (340)
89 1p22_A F-BOX/WD-repeat protein 100.0 2E-32 6.9E-37 230.5 31.1 225 4-261 138-364 (435)
90 3k26_A Polycomb protein EED; W 100.0 4.5E-34 1.5E-38 234.2 20.1 249 2-262 23-318 (366)
91 1pgu_A Actin interacting prote 100.0 1.9E-32 6.5E-37 239.3 31.3 241 2-262 23-283 (615)
92 3gre_A Serine/threonine-protei 100.0 1.5E-33 5E-38 237.2 23.3 247 2-259 116-437 (437)
93 4h5i_A Guanine nucleotide-exch 100.0 3.7E-33 1.3E-37 229.9 24.1 257 1-264 18-302 (365)
94 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-32 2E-36 221.9 28.9 242 1-261 23-335 (355)
95 1p22_A F-BOX/WD-repeat protein 100.0 4.2E-32 1.4E-36 228.6 26.7 227 6-263 180-415 (435)
96 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-31 1.5E-35 222.9 32.9 226 3-262 123-348 (445)
97 3jrp_A Fusion protein of prote 100.0 3.1E-32 1E-36 224.2 24.9 216 38-262 3-240 (379)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-31 5.5E-36 226.0 29.8 209 43-260 99-337 (450)
99 4gga_A P55CDC, cell division c 100.0 2.5E-31 8.4E-36 222.9 30.1 240 3-264 111-355 (420)
100 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-31 5.6E-36 225.8 28.8 241 1-262 19-297 (588)
101 1yfq_A Cell cycle arrest prote 100.0 7.7E-32 2.6E-36 219.3 26.0 227 2-254 61-315 (342)
102 3dw8_B Serine/threonine-protei 100.0 5.8E-32 2E-36 227.8 25.3 254 2-259 98-443 (447)
103 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-31 7.1E-36 240.1 30.4 238 2-262 60-302 (814)
104 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-31 9.1E-36 241.4 30.8 241 2-260 22-310 (902)
105 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-31 1.2E-35 248.4 31.9 243 2-262 662-1034(1249)
106 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-30 4.2E-35 220.1 30.6 231 8-263 208-443 (445)
107 1pgu_A Actin interacting prote 100.0 7.1E-31 2.4E-35 229.3 30.0 250 2-263 69-329 (615)
108 3lrv_A PRE-mRNA-splicing facto 100.0 2.7E-31 9.2E-36 216.9 25.2 240 2-262 81-333 (343)
109 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-31 3.8E-36 243.9 23.9 254 2-266 440-787 (902)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-30 5.6E-35 219.8 28.3 248 2-260 107-389 (450)
111 2w18_A PALB2, fancn, partner a 100.0 1.4E-30 4.8E-35 207.7 26.0 233 11-260 56-355 (356)
112 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-30 3.7E-35 212.1 25.4 219 40-262 5-249 (351)
113 3zwl_B Eukaryotic translation 100.0 3.8E-30 1.3E-34 210.9 28.5 217 34-263 20-250 (369)
114 4a11_B DNA excision repair pro 100.0 1E-30 3.5E-35 217.2 24.4 233 17-263 21-277 (408)
115 2xyi_A Probable histone-bindin 100.0 2.2E-30 7.4E-35 217.9 26.3 208 41-262 123-353 (430)
116 3mmy_A MRNA export factor; mRN 100.0 1.4E-29 4.9E-34 207.3 28.9 215 37-263 30-305 (368)
117 3jro_A Fusion protein of prote 100.0 3.1E-30 1.1E-34 230.9 22.9 214 40-262 3-238 (753)
118 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-29 4.4E-34 214.3 25.2 226 2-251 90-350 (588)
119 1l0q_A Surface layer protein; 100.0 3.2E-28 1.1E-32 201.7 31.8 234 2-262 36-275 (391)
120 4gq1_A NUP37; propeller, trans 100.0 7.4E-30 2.5E-34 212.2 19.2 252 6-262 27-348 (393)
121 3bws_A Protein LP49; two-domai 100.0 8.8E-28 3E-32 201.6 31.9 235 2-263 174-433 (433)
122 3bws_A Protein LP49; two-domai 100.0 1.2E-27 4E-32 200.8 32.0 241 2-263 127-391 (433)
123 1l0q_A Surface layer protein; 100.0 3.9E-27 1.3E-31 195.1 31.3 228 9-263 2-234 (391)
124 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-27 5.6E-32 195.5 25.4 205 39-261 12-270 (355)
125 4ggc_A P55CDC, cell division c 100.0 9.4E-27 3.2E-31 187.2 25.6 206 2-216 72-315 (318)
126 2w18_A PALB2, fancn, partner a 100.0 2.5E-27 8.7E-32 189.0 20.7 182 17-214 155-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.3E-24 2.8E-28 176.9 30.1 225 9-262 143-387 (415)
128 1nir_A Nitrite reductase; hemo 99.9 5.7E-23 1.9E-27 177.2 27.4 250 2-264 183-460 (543)
129 1ri6_A Putative isomerase YBHE 99.9 1.6E-22 5.4E-27 164.0 27.5 245 2-261 42-307 (343)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.6E-22 1.9E-26 165.8 27.6 213 2-243 183-409 (415)
131 2ojh_A Uncharacterized protein 99.9 1.4E-22 4.8E-27 160.7 22.4 229 2-253 46-293 (297)
132 2oit_A Nucleoporin 214KDA; NH2 99.9 8.2E-23 2.8E-27 171.7 21.7 210 2-217 41-279 (434)
133 3u4y_A Uncharacterized protein 99.9 9E-22 3.1E-26 159.2 26.2 243 2-263 44-305 (331)
134 3scy_A Hypothetical bacterial 99.9 4.1E-21 1.4E-25 157.5 30.3 251 2-261 54-336 (361)
135 3hfq_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 156.9 27.4 250 2-260 44-315 (347)
136 3vgz_A Uncharacterized protein 99.9 9.2E-21 3.2E-25 154.4 29.4 247 2-264 45-305 (353)
137 1nir_A Nitrite reductase; hemo 99.9 2.4E-21 8E-26 167.1 26.8 236 4-262 144-402 (543)
138 2ojh_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 154.6 23.0 224 14-262 17-258 (297)
139 2ecf_A Dipeptidyl peptidase IV 99.9 4.9E-22 1.7E-26 177.6 22.1 238 2-261 41-366 (741)
140 2oit_A Nucleoporin 214KDA; NH2 99.9 3.6E-22 1.2E-26 167.8 20.0 206 48-262 38-278 (434)
141 1pby_B Quinohemoprotein amine 99.9 3.9E-21 1.3E-25 155.5 24.2 235 10-263 2-311 (337)
142 3o4h_A Acylamino-acid-releasin 99.9 5.3E-22 1.8E-26 172.8 20.0 227 2-260 26-274 (582)
143 1jmx_B Amine dehydrogenase; ox 99.9 9.4E-21 3.2E-25 154.0 25.0 244 2-264 4-327 (349)
144 1ri6_A Putative isomerase YBHE 99.9 2.9E-20 9.9E-25 150.7 26.1 240 10-261 6-261 (343)
145 3u4y_A Uncharacterized protein 99.9 5.3E-20 1.8E-24 148.8 26.9 237 4-262 4-252 (331)
146 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-21 6.3E-26 173.3 19.9 240 2-259 21-341 (723)
147 3vgz_A Uncharacterized protein 99.9 6.5E-19 2.2E-23 143.4 30.3 225 2-252 93-334 (353)
148 1k32_A Tricorn protease; prote 99.9 5.2E-20 1.8E-24 170.3 24.5 236 2-260 249-500 (1045)
149 2ecf_A Dipeptidyl peptidase IV 99.9 7.4E-20 2.5E-24 163.5 24.7 237 2-260 113-411 (741)
150 2z3z_A Dipeptidyl aminopeptida 99.9 3E-19 1E-23 158.7 27.2 243 2-263 125-436 (706)
151 2z3z_A Dipeptidyl aminopeptida 99.9 6.7E-20 2.3E-24 162.9 22.1 241 2-260 86-389 (706)
152 1xfd_A DIP, dipeptidyl aminope 99.9 2E-19 6.7E-24 160.3 24.6 246 2-261 65-392 (723)
153 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-19 5.6E-24 148.3 20.5 252 2-261 44-340 (365)
154 1q7f_A NHL, brain tumor CG1071 99.8 3.3E-17 1.1E-21 129.9 28.7 245 2-264 34-282 (286)
155 1z68_A Fibroblast activation p 99.8 1.3E-19 4.5E-24 161.4 16.1 239 2-258 20-340 (719)
156 3fvz_A Peptidyl-glycine alpha- 99.8 6E-17 2.1E-21 131.2 27.4 246 2-262 28-322 (329)
157 3hfq_A Uncharacterized protein 99.8 3.4E-17 1.1E-21 133.4 25.9 236 16-261 13-270 (347)
158 1k32_A Tricorn protease; prote 99.8 1.7E-17 5.9E-22 153.5 26.5 233 3-262 343-637 (1045)
159 4a5s_A Dipeptidyl peptidase 4 99.8 2E-18 6.9E-23 154.3 17.9 242 2-262 21-353 (740)
160 3scy_A Hypothetical bacterial 99.8 1.6E-16 5.5E-21 130.0 27.4 242 7-261 11-290 (361)
161 3o4h_A Acylamino-acid-releasin 99.8 2.3E-17 7.8E-22 143.6 21.6 227 2-262 69-315 (582)
162 1pby_B Quinohemoprotein amine 99.8 2.4E-16 8.2E-21 127.2 23.7 189 60-263 2-270 (337)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 6E-16 2.1E-20 127.0 23.8 240 12-261 5-290 (365)
164 3pe7_A Oligogalacturonate lyas 99.7 1E-16 3.6E-21 132.2 17.8 238 3-262 41-329 (388)
165 1jmx_B Amine dehydrogenase; ox 99.7 5.6E-16 1.9E-20 125.7 19.8 157 53-221 6-180 (349)
166 1z68_A Fibroblast activation p 99.7 1.5E-16 5.2E-21 141.7 17.3 238 2-260 64-389 (719)
167 3pe7_A Oligogalacturonate lyas 99.7 2.1E-16 7.3E-21 130.4 16.4 237 2-260 85-380 (388)
168 3azo_A Aminopeptidase; POP fam 99.7 2.4E-15 8.1E-20 132.7 23.8 240 3-260 29-321 (662)
169 3e5z_A Putative gluconolactona 99.7 1.8E-14 6.2E-19 114.7 25.7 227 2-256 32-281 (296)
170 2oiz_A Aromatic amine dehydrog 99.7 7.3E-15 2.5E-19 120.4 23.6 238 3-263 55-335 (361)
171 1rwi_B Serine/threonine-protei 99.7 3.1E-14 1.1E-18 111.5 24.8 238 2-264 28-266 (270)
172 2dg1_A DRP35, lactonase; beta 99.7 3.2E-13 1.1E-17 109.1 29.8 235 2-252 49-300 (333)
173 1q7f_A NHL, brain tumor CG1071 99.7 2.6E-13 9E-18 107.3 28.2 209 43-262 26-238 (286)
174 4a5s_A Dipeptidyl peptidase 4 99.7 3E-15 1E-19 133.8 18.6 208 48-262 18-294 (740)
175 3c5m_A Oligogalacturonate lyas 99.7 3.7E-15 1.3E-19 123.0 17.4 229 3-260 86-380 (396)
176 3azo_A Aminopeptidase; POP fam 99.7 2.9E-14 1E-18 125.8 22.7 236 6-260 87-365 (662)
177 3c5m_A Oligogalacturonate lyas 99.7 6.8E-15 2.3E-19 121.4 17.3 234 2-262 40-329 (396)
178 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.8E-18 122.0 26.0 240 2-262 129-414 (710)
179 3dsm_A Uncharacterized protein 99.6 7.1E-13 2.4E-17 107.2 27.1 234 8-262 53-302 (328)
180 2dg1_A DRP35, lactonase; beta 99.6 4E-13 1.4E-17 108.5 25.6 236 2-262 10-263 (333)
181 2gop_A Trilobed protease; beta 99.6 2.5E-13 8.6E-18 110.3 24.3 219 2-261 63-330 (347)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.5E-12 8.5E-17 102.8 29.5 243 2-261 22-298 (314)
183 3no2_A Uncharacterized protein 99.6 5.4E-13 1.9E-17 105.2 25.1 219 7-250 3-231 (276)
184 3fvz_A Peptidyl-glycine alpha- 99.6 1E-12 3.6E-17 106.2 24.8 207 46-261 23-276 (329)
185 2z2n_A Virginiamycin B lyase; 99.6 3.4E-11 1.1E-15 95.3 32.1 237 2-262 19-255 (299)
186 2bkl_A Prolyl endopeptidase; m 99.6 6.6E-13 2.3E-17 117.9 24.1 238 2-262 125-397 (695)
187 1qks_A Cytochrome CD1 nitrite 99.6 3.1E-11 1.1E-15 104.2 30.9 249 3-263 202-478 (567)
188 2gop_A Trilobed protease; beta 99.5 8.6E-12 3E-16 101.1 25.4 211 8-261 23-290 (347)
189 2z2n_A Virginiamycin B lyase; 99.5 2E-10 6.9E-15 90.8 30.3 234 2-261 61-294 (299)
190 2oiz_A Aromatic amine dehydrog 99.5 1.5E-11 5E-16 100.8 24.1 220 2-244 112-360 (361)
191 2qc5_A Streptogramin B lactona 99.5 3.8E-10 1.3E-14 89.3 31.0 237 2-262 24-260 (300)
192 1xip_A Nucleoporin NUP159; bet 99.5 8.2E-13 2.8E-17 108.2 15.2 179 2-202 42-230 (388)
193 3e5z_A Putative gluconolactona 99.5 1.2E-11 4E-16 98.3 21.6 202 42-262 23-246 (296)
194 1xip_A Nucleoporin NUP159; bet 99.5 7.7E-13 2.6E-17 108.4 14.9 183 48-251 39-233 (388)
195 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-11 7.6E-16 108.9 24.6 237 3-262 168-441 (741)
196 3no2_A Uncharacterized protein 99.5 1.9E-11 6.4E-16 96.3 21.4 187 59-261 5-194 (276)
197 2bkl_A Prolyl endopeptidase; m 99.5 1E-11 3.4E-16 110.4 21.5 234 6-260 76-347 (695)
198 2mad_H Methylamine dehydrogena 99.5 5.4E-10 1.8E-14 91.8 30.0 242 3-264 71-352 (373)
199 3g4e_A Regucalcin; six bladed 99.5 5.5E-10 1.9E-14 88.8 29.4 228 3-251 18-261 (297)
200 1qks_A Cytochrome CD1 nitrite 99.5 5.7E-10 2E-14 96.4 31.2 236 6-262 164-421 (567)
201 3dsm_A Uncharacterized protein 99.4 2E-10 6.8E-15 92.8 25.8 223 17-262 15-253 (328)
202 2xdw_A Prolyl endopeptidase; a 99.4 7.3E-11 2.5E-15 105.1 23.2 199 43-258 121-362 (710)
203 1rwi_B Serine/threonine-protei 99.4 3.4E-10 1.2E-14 88.3 23.9 196 2-218 71-266 (270)
204 3hrp_A Uncharacterized protein 99.4 9.6E-10 3.3E-14 91.5 27.6 243 2-260 135-408 (409)
205 2ghs_A AGR_C_1268P; regucalcin 99.4 2.1E-09 7.3E-14 86.6 27.7 224 3-251 54-291 (326)
206 2qc5_A Streptogramin B lactona 99.4 5.1E-09 1.7E-13 82.7 29.3 232 2-259 66-297 (300)
207 1yr2_A Prolyl oligopeptidase; 99.4 1.4E-10 4.9E-15 103.7 22.3 236 6-260 115-391 (741)
208 3dr2_A Exported gluconolactona 99.3 8.5E-10 2.9E-14 88.0 22.8 227 3-257 50-302 (305)
209 2qe8_A Uncharacterized protein 99.3 4.4E-10 1.5E-14 91.3 21.3 240 2-255 21-314 (343)
210 3iuj_A Prolyl endopeptidase; h 99.3 1.1E-09 3.9E-14 97.2 24.8 232 3-261 134-404 (693)
211 3sjl_D Methylamine dehydrogena 99.3 1.7E-09 5.9E-14 88.3 20.9 239 3-264 83-365 (386)
212 3hrp_A Uncharacterized protein 99.2 2.1E-08 7.1E-13 83.4 25.2 202 3-214 176-408 (409)
213 3g4e_A Regucalcin; six bladed 99.2 1.4E-07 4.9E-12 74.8 27.8 195 49-261 15-228 (297)
214 3c75_H MADH, methylamine dehyd 99.2 6.2E-09 2.1E-13 86.4 19.8 239 3-264 123-404 (426)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 2.7E-08 9.1E-13 79.2 22.5 195 2-216 75-299 (314)
216 2mad_H Methylamine dehydrogena 99.1 2.2E-07 7.4E-12 76.3 26.1 200 3-222 130-356 (373)
217 2ghs_A AGR_C_1268P; regucalcin 99.1 4.9E-07 1.7E-11 72.7 27.2 194 50-262 52-260 (326)
218 3dr2_A Exported gluconolactona 99.1 1.1E-07 3.8E-12 75.7 23.1 196 46-262 44-267 (305)
219 3sjl_D Methylamine dehydrogena 99.1 8.3E-08 2.8E-12 78.5 21.6 203 3-224 142-371 (386)
220 2hz6_A Endoplasmic reticulum t 99.0 1.9E-10 6.5E-15 94.4 5.3 204 8-244 8-216 (369)
221 2hz6_A Endoplasmic reticulum t 99.0 3.5E-10 1.2E-14 92.8 6.3 176 60-260 10-190 (369)
222 1mda_H Methylamine dehydrogena 99.0 3.3E-08 1.1E-12 80.7 17.3 232 3-265 70-349 (368)
223 2ece_A 462AA long hypothetical 99.0 5.6E-07 1.9E-11 74.4 24.5 235 7-250 93-399 (462)
224 2iwa_A Glutamine cyclotransfer 99.0 7.4E-07 2.5E-11 69.1 23.2 203 48-261 22-236 (266)
225 3nol_A Glutamine cyclotransfer 98.9 9.7E-07 3.3E-11 67.8 22.6 192 47-251 43-244 (262)
226 3iuj_A Prolyl endopeptidase; h 98.9 3.8E-07 1.3E-11 81.0 21.5 199 2-218 179-407 (693)
227 3nok_A Glutaminyl cyclase; bet 98.9 2.6E-06 8.8E-11 65.5 22.6 190 47-250 55-253 (268)
228 2ece_A 462AA long hypothetical 98.8 2.8E-06 9.4E-11 70.4 22.9 200 56-261 93-351 (462)
229 1kb0_A Quinohemoprotein alcoho 98.8 1.3E-06 4.6E-11 77.2 21.9 240 8-262 127-507 (677)
230 2fp8_A Strictosidine synthase; 98.8 1.3E-05 4.4E-10 64.2 25.5 243 2-261 23-312 (322)
231 3mbr_X Glutamine cyclotransfer 98.8 1.3E-05 4.4E-10 61.0 23.5 192 47-251 21-223 (243)
232 3c75_H MADH, methylamine dehyd 98.8 1.9E-06 6.5E-11 71.6 20.0 203 3-223 182-409 (426)
233 1npe_A Nidogen, entactin; glyc 98.7 3.2E-05 1.1E-09 60.0 27.6 218 3-244 41-263 (267)
234 2qe8_A Uncharacterized protein 98.7 2E-06 7E-11 69.6 18.2 203 2-209 71-314 (343)
235 2iwa_A Glutamine cyclotransfer 98.7 4.3E-05 1.5E-09 59.2 24.2 194 3-216 26-237 (266)
236 1yiq_A Quinohemoprotein alcoho 98.7 4.7E-06 1.6E-10 73.8 20.6 187 51-249 239-536 (689)
237 1yiq_A Quinohemoprotein alcoho 98.6 1.3E-05 4.5E-10 71.0 21.9 241 8-261 120-504 (689)
238 1kb0_A Quinohemoprotein alcoho 98.6 1.6E-05 5.5E-10 70.3 22.4 185 51-247 247-535 (677)
239 1npe_A Nidogen, entactin; glyc 98.6 9.4E-05 3.2E-09 57.4 30.4 231 10-261 2-237 (267)
240 2p4o_A Hypothetical protein; p 98.6 0.00014 4.6E-09 57.8 26.2 224 3-252 37-278 (306)
241 3nok_A Glutaminyl cyclase; bet 98.6 5.3E-05 1.8E-09 58.3 21.1 179 3-203 60-253 (268)
242 3nol_A Glutamine cyclotransfer 98.5 3.6E-05 1.2E-09 59.2 19.7 182 3-204 48-243 (262)
243 3hxj_A Pyrrolo-quinoline quino 98.5 2.2E-05 7.7E-10 62.6 18.8 216 10-261 108-323 (330)
244 3hxj_A Pyrrolo-quinoline quino 98.5 8.6E-06 3E-10 65.0 16.1 217 6-262 28-244 (330)
245 1k3i_A Galactose oxidase precu 98.5 2.3E-05 8E-10 69.1 19.6 245 2-261 190-496 (656)
246 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00032 1.1E-08 57.1 24.4 227 8-261 102-336 (376)
247 1fwx_A Nitrous oxide reductase 98.4 0.00011 3.9E-09 62.9 21.3 189 57-262 100-361 (595)
248 1mda_H Methylamine dehydrogena 98.4 1.5E-05 5.1E-10 65.0 15.4 195 2-223 128-353 (368)
249 1fwx_A Nitrous oxide reductase 98.4 1.1E-05 3.8E-10 69.1 14.6 222 7-251 99-407 (595)
250 3qqz_A Putative uncharacterize 98.3 0.00059 2E-08 52.5 25.6 209 41-260 21-249 (255)
251 3mbr_X Glutamine cyclotransfer 98.3 0.00058 2E-08 52.0 22.7 182 3-204 26-222 (243)
252 2p9w_A MAL S 1 allergenic prot 98.1 0.0017 5.9E-08 51.6 23.5 164 51-216 17-215 (334)
253 1k3i_A Galactose oxidase precu 98.1 0.00027 9.2E-09 62.3 18.3 230 3-251 248-530 (656)
254 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0023 8E-08 52.0 29.1 227 8-260 52-294 (376)
255 2fp8_A Strictosidine synthase; 98.1 0.0024 8.1E-08 50.8 23.0 186 51-251 23-248 (322)
256 2ad6_A Methanol dehydrogenase 98.0 0.0021 7.2E-08 55.6 21.6 138 118-261 273-493 (571)
257 1kv9_A Type II quinohemoprotei 98.0 0.0019 6.4E-08 57.1 21.6 157 61-220 119-337 (668)
258 1kv9_A Type II quinohemoprotei 98.0 0.00099 3.4E-08 58.8 19.7 240 9-261 117-487 (668)
259 4a2l_A BT_4663, two-component 97.9 0.011 3.6E-07 53.4 28.5 204 46-260 262-478 (795)
260 3v64_C Agrin; beta propeller, 97.9 0.0066 2.2E-07 49.1 30.3 196 48-259 74-272 (349)
261 3qqz_A Putative uncharacterize 97.9 0.0052 1.8E-07 47.2 19.6 170 92-263 24-205 (255)
262 3v65_B Low-density lipoprotein 97.8 0.0082 2.8E-07 49.2 29.0 196 48-259 117-315 (386)
263 4a2l_A BT_4663, two-component 97.8 0.015 5.2E-07 52.3 28.8 244 3-260 268-524 (795)
264 3tc9_A Hypothetical hydrolase; 97.8 0.0094 3.2E-07 49.6 24.8 242 3-260 142-428 (430)
265 3sov_A LRP-6, low-density lipo 97.8 0.0082 2.8E-07 47.8 20.7 181 68-263 12-198 (318)
266 3v65_B Low-density lipoprotein 97.8 0.011 3.7E-07 48.5 24.5 196 3-217 121-319 (386)
267 2xe4_A Oligopeptidase B; hydro 97.8 0.0054 1.8E-07 55.0 20.5 202 44-259 170-395 (751)
268 3tc9_A Hypothetical hydrolase; 97.7 0.014 4.6E-07 48.7 23.2 155 49-215 139-300 (430)
269 1flg_A Protein (quinoprotein e 97.7 0.018 6.3E-07 49.9 24.5 140 117-261 291-515 (582)
270 2p9w_A MAL S 1 allergenic prot 97.7 0.0051 1.7E-07 48.9 17.5 164 98-261 16-214 (334)
271 3amr_A 3-phytase; beta-propell 97.7 0.013 4.3E-07 47.1 23.0 189 61-261 42-262 (355)
272 3v64_C Agrin; beta propeller, 97.7 0.014 4.6E-07 47.2 25.5 194 3-216 78-275 (349)
273 2xe4_A Oligopeptidase B; hydro 97.7 0.0024 8.4E-08 57.2 17.1 154 96-258 175-348 (751)
274 1ijq_A LDL receptor, low-densi 97.6 0.014 5E-07 46.3 26.5 179 69-262 10-195 (316)
275 4hw6_A Hypothetical protein, I 97.6 0.022 7.4E-07 47.5 23.6 202 49-262 141-374 (433)
276 3sre_A PON1, serum paraoxonase 97.5 0.023 7.8E-07 45.9 20.4 140 115-261 81-251 (355)
277 2ad6_A Methanol dehydrogenase 97.5 0.023 7.9E-07 49.1 19.9 59 159-223 443-501 (571)
278 1n7d_A LDL receptor, low-densi 97.5 0.0038 1.3E-07 55.4 15.3 205 2-220 410-618 (699)
279 4hw6_A Hypothetical protein, I 97.5 0.035 1.2E-06 46.2 25.9 240 2-260 143-431 (433)
280 3p5b_L Low density lipoprotein 97.5 0.033 1.1E-06 45.8 26.3 188 61-264 85-279 (400)
281 3amr_A 3-phytase; beta-propell 97.5 0.029 9.8E-07 45.1 23.2 202 7-220 38-268 (355)
282 3sre_A PON1, serum paraoxonase 97.5 0.03 1E-06 45.2 21.3 203 3-215 55-297 (355)
283 3v9f_A Two-component system se 97.5 0.058 2E-06 48.4 25.6 200 47-260 363-566 (781)
284 2p4o_A Hypothetical protein; p 97.4 0.028 9.6E-07 44.2 25.1 200 48-262 33-242 (306)
285 3kya_A Putative phosphatase; s 97.3 0.062 2.1E-06 45.4 22.5 160 49-214 141-339 (496)
286 1w6s_A Methanol dehydrogenase 97.2 0.095 3.3E-06 45.6 25.1 29 148-176 318-349 (599)
287 3m0c_C LDL receptor, low-densi 97.1 0.14 4.8E-06 46.0 25.1 184 67-265 402-592 (791)
288 3m0c_C LDL receptor, low-densi 97.1 0.15 5E-06 46.0 25.6 202 3-217 429-633 (791)
289 3sov_A LRP-6, low-density lipo 97.1 0.073 2.5E-06 42.3 27.1 221 18-260 12-236 (318)
290 1flg_A Protein (quinoprotein e 97.1 0.13 4.4E-06 44.6 21.3 59 159-223 465-523 (582)
291 1n7d_A LDL receptor, low-densi 97.0 0.015 5.2E-07 51.6 14.1 197 49-260 408-612 (699)
292 1w6s_A Methanol dehydrogenase 97.0 0.14 4.7E-06 44.6 24.8 157 62-222 124-348 (599)
293 1ijq_A LDL receptor, low-densi 97.0 0.098 3.4E-06 41.4 30.8 220 19-260 10-236 (316)
294 3p5b_L Low density lipoprotein 96.9 0.12 4.2E-06 42.4 31.9 219 19-259 92-317 (400)
295 2ism_A Putative oxidoreductase 96.9 0.11 3.8E-06 41.9 20.4 235 2-250 35-333 (352)
296 3a9g_A Putative uncharacterize 96.9 0.12 4E-06 41.8 22.8 234 2-250 33-330 (354)
297 3kya_A Putative phosphatase; s 96.9 0.11 3.6E-06 44.0 17.4 156 97-262 141-341 (496)
298 3v9f_A Two-component system se 96.8 0.28 9.5E-06 44.0 28.5 202 46-260 312-522 (781)
299 3s94_A LRP-6, low-density lipo 96.5 0.41 1.4E-05 41.8 22.2 186 67-265 16-205 (619)
300 2ism_A Putative oxidoreductase 96.1 0.32 1.1E-05 39.1 15.2 104 140-249 32-152 (352)
301 3ei3_A DNA damage-binding prot 96.1 0.94 3.2E-05 42.7 23.8 237 9-264 337-593 (1158)
302 3a9g_A Putative uncharacterize 96.1 0.25 8.5E-06 39.8 14.4 103 140-249 30-152 (354)
303 2xbg_A YCF48-like protein; pho 96.0 0.44 1.5E-05 37.8 28.6 231 2-255 40-272 (327)
304 4a0p_A LRP6, LRP-6, low-densit 95.9 0.78 2.7E-05 40.1 25.5 195 2-217 41-238 (628)
305 1tl2_A L10, protein (tachylect 95.9 0.37 1.3E-05 36.0 13.0 108 139-255 41-156 (236)
306 2xzh_A Clathrin heavy chain 1; 95.7 0.62 2.1E-05 37.1 25.7 233 4-259 73-329 (365)
307 1bpo_A Protein (clathrin); cla 95.4 1 3.4E-05 37.4 25.6 231 5-259 73-328 (494)
308 2vpj_A Kelch-like protein 12; 95.2 0.8 2.7E-05 35.5 24.1 184 59-260 63-276 (301)
309 3pbp_A Nucleoporin NUP82; beta 95.2 1.1 3.7E-05 37.0 19.5 116 140-256 67-206 (452)
310 1cru_A Protein (soluble quinop 95.1 1.2 4.2E-05 37.1 16.2 107 140-250 28-162 (454)
311 3pbp_A Nucleoporin NUP82; beta 95.0 1.3 4.4E-05 36.6 18.0 148 61-212 34-208 (452)
312 2xn4_A Kelch-like protein 2; s 94.9 0.98 3.3E-05 35.1 19.1 187 8-217 61-277 (302)
313 3das_A Putative oxidoreductase 94.8 1.2 4.2E-05 35.7 14.9 109 139-250 32-158 (347)
314 4a0p_A LRP6, LRP-6, low-densit 94.7 2 6.8E-05 37.6 30.0 219 17-259 13-234 (628)
315 2xn4_A Kelch-like protein 2; s 94.6 1.2 4.2E-05 34.5 23.7 183 59-261 62-275 (302)
316 1xi4_A Clathrin heavy chain; a 94.3 3.9 0.00013 39.3 19.0 197 5-221 73-294 (1630)
317 3ii7_A Kelch-like protein 7; p 94.2 1.5 5.2E-05 34.0 21.5 188 7-217 54-273 (306)
318 3ii7_A Kelch-like protein 7; p 93.7 1.9 6.6E-05 33.4 25.3 226 9-261 12-271 (306)
319 3s94_A LRP-6, low-density lipo 93.4 3.6 0.00012 35.9 25.2 181 18-216 17-202 (619)
320 2vpj_A Kelch-like protein 12; 93.4 2.1 7.2E-05 33.1 21.0 192 7-217 61-279 (301)
321 1zgk_A Kelch-like ECH-associat 92.8 2.8 9.5E-05 32.6 18.2 145 59-217 122-288 (308)
322 3sbq_A Nitrous-oxide reductase 92.6 3.7 0.00013 35.3 13.1 76 139-216 323-408 (638)
323 1zgk_A Kelch-like ECH-associat 92.4 3.1 0.00011 32.3 22.2 228 6-260 22-285 (308)
324 2xbg_A YCF48-like protein; pho 92.1 3.6 0.00012 32.4 26.6 194 47-259 122-319 (327)
325 3das_A Putative oxidoreductase 91.7 4.3 0.00015 32.5 23.6 239 2-250 36-326 (347)
326 4asc_A Kelch repeat and BTB do 90.9 4.7 0.00016 31.4 19.5 104 59-171 99-223 (315)
327 1tl2_A L10, protein (tachylect 90.8 4 0.00014 30.5 14.2 184 7-210 2-204 (236)
328 2zwa_A Leucine carboxyl methyl 90.2 9.4 0.00032 33.8 16.2 157 60-218 399-579 (695)
329 1xi4_A Clathrin heavy chain; a 89.9 15 0.00051 35.6 18.2 218 16-262 45-289 (1630)
330 2uvk_A YJHT; unknown function, 89.6 6.6 0.00022 31.1 17.8 142 69-220 168-346 (357)
331 2be1_A Serine/threonine-protei 89.6 4.1 0.00014 32.5 10.4 111 60-176 11-137 (339)
332 2wg3_C Hedgehog-interacting pr 89.2 9 0.00031 32.1 12.7 110 140-251 15-158 (463)
333 2xzh_A Clathrin heavy chain 1; 88.6 8.1 0.00028 30.9 26.5 217 16-262 46-290 (365)
334 2be1_A Serine/threonine-protei 87.7 3 0.0001 33.3 8.5 113 109-223 12-137 (339)
335 4gq2_M Nucleoporin NUP120; bet 87.5 3.4 0.00012 38.1 9.8 36 140-175 237-272 (950)
336 1cru_A Protein (soluble quinop 87.5 11 0.00039 31.3 20.0 107 97-204 29-162 (454)
337 3ei3_A DNA damage-binding prot 86.7 22 0.00074 33.7 22.5 112 95-214 514-634 (1158)
338 2zwa_A Leucine carboxyl methyl 86.4 17 0.00058 32.1 16.7 156 8-171 451-637 (695)
339 1bpo_A Protein (clathrin); cla 85.9 14 0.00048 30.8 27.3 220 16-262 45-289 (494)
340 4gq2_M Nucleoporin NUP120; bet 84.6 7.2 0.00025 36.0 10.3 37 48-85 237-273 (950)
341 2g8s_A Glucose/sorbosone dehyd 83.8 15 0.00051 29.3 27.6 70 188-259 273-349 (353)
342 2g8s_A Glucose/sorbosone dehyd 83.2 5.9 0.0002 31.7 8.3 63 187-249 19-87 (353)
343 2woz_A Kelch repeat and BTB do 81.4 17 0.00057 28.2 19.6 104 59-171 110-233 (318)
344 4asc_A Kelch repeat and BTB do 71.2 33 0.0011 26.4 24.4 133 71-217 69-222 (315)
345 3sbq_A Nitrous-oxide reductase 70.7 7.3 0.00025 33.5 5.5 71 98-169 326-408 (638)
346 2uvk_A YJHT; unknown function, 69.0 40 0.0014 26.4 22.8 20 8-27 19-39 (357)
347 4fhn_B Nucleoporin NUP120; pro 68.7 6 0.00021 37.3 5.1 35 141-175 240-274 (1139)
348 3f7f_A Nucleoporin NUP120; nuc 66.1 11 0.00039 33.3 5.9 34 141-176 224-257 (729)
349 3f7f_A Nucleoporin NUP120; nuc 64.7 14 0.00049 32.7 6.3 36 47-85 222-257 (729)
350 3zwu_A Alkaline phosphatase PH 58.4 46 0.0016 28.8 8.2 60 187-249 477-548 (592)
351 2woz_A Kelch repeat and BTB do 56.9 64 0.0022 24.7 22.2 133 71-217 80-232 (318)
352 3zwu_A Alkaline phosphatase PH 55.5 77 0.0026 27.4 9.2 59 142-204 479-549 (592)
353 3no0_A DNA gyrase subunit A; D 55.1 68 0.0023 24.5 13.3 122 139-263 68-197 (276)
354 4a9v_A PHOX; hydrolase, beta-p 53.4 66 0.0023 27.8 8.3 61 187-250 477-549 (592)
355 3s25_A Hypothetical 7-bladed b 50.0 87 0.003 24.2 19.6 161 69-263 88-256 (302)
356 3ott_A Two-component system se 46.8 1.5E+02 0.0052 26.1 26.0 191 46-260 62-258 (758)
357 3uc1_A DNA gyrase subunit A; D 46.5 1.1E+02 0.0036 24.2 19.5 124 139-263 95-229 (327)
358 4fhn_B Nucleoporin NUP120; pro 43.5 26 0.00088 33.1 4.8 33 52-85 243-275 (1139)
359 2wg3_C Hedgehog-interacting pr 38.8 1.7E+02 0.0058 24.3 24.7 20 231-250 335-354 (463)
360 3ol2_B Plexin-B1; beta-propell 37.7 52 0.0018 28.0 5.3 61 198-258 401-462 (528)
361 1olz_A Semaphorin 4D; developm 37.7 86 0.003 27.6 6.9 57 199-257 417-477 (663)
362 1q47_A Semaphorin 3A; beta pro 34.8 84 0.0029 26.5 6.1 59 199-257 423-487 (495)
363 1gff_3 Bacteriophage G4 capsid 33.4 27 0.00092 15.3 1.5 17 248-264 8-24 (26)
364 4a9v_A PHOX; hydrolase, beta-p 33.1 2.4E+02 0.0082 24.4 9.5 61 141-205 478-550 (592)
365 3al9_A Plexin-A2; beta-propell 31.7 50 0.0017 28.2 4.3 59 198-257 414-476 (539)
366 3ott_A Two-component system se 31.4 2.7E+02 0.0093 24.5 30.1 203 47-260 279-500 (758)
367 3nvq_A Semaphorin-7A; beta-pro 28.7 1.2E+02 0.0041 26.3 6.1 61 198-258 381-445 (590)
368 3al9_A Plexin-A2; beta-propell 26.1 2.7E+02 0.0092 23.7 7.8 71 141-211 402-476 (539)
369 4gx7_A Cytolysin and hemolysin 25.1 1.7E+02 0.0057 20.0 5.5 54 200-253 61-115 (152)
370 1sqj_A OXG-RCBH, oligoxylogluc 24.2 3.9E+02 0.013 23.9 16.9 162 46-210 14-195 (789)
371 2rh2_A Dihydrofolate reductase 22.3 33 0.0011 18.4 0.9 31 236-266 31-61 (62)
372 4gz8_A Semaphorin-3A; multi-do 20.1 1.5E+02 0.0052 26.1 5.2 59 199-257 431-495 (667)
No 1
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-48 Score=323.67 Aligned_cols=267 Identities=78% Similarity=1.368 Sum_probs=231.8
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++|+|+|++|++++.|+++++|++.......+..+..+.+.+|.+.|.++.|.|+++..|++|+.|++|++||+.++.
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 36899999999999999999999999765444555667778899999999999999877789999999999999999998
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
....+......+|...+.++.+++.+..++++++.|+.|++||++........+.+|.+.|.+++|+|++++|++++.|+
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 88777655556899999999998877889999999999999999865567788889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+|++||+++++.+..+..... ......+.+++|+|+++++++|+.||.|++||....+....+......|.+.|.+++
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 999999999887765543221 122345889999999999999999999999999887777666555568999999999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCceEecC
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~~~ 267 (267)
|+|+|++|++||.||+|++|++.++++++
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~~iv 380 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV 380 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSSSCC
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCcccC
Confidence 99999999999999999999999987653
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-43 Score=285.74 Aligned_cols=240 Identities=21% Similarity=0.304 Sum_probs=205.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.||+|++||+... ...+.+.+|..+|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQ-------VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCC-------ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCcE
Confidence 6889999999999999999999998652 2456778899999999999975 5899999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 160 (267)
...+ .+|...|.+++++|. ++++++++.|+.|++||++........+.+|...|.+++|+| ++..|++|+.|+
T Consensus 90 ~~~~-----~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 90 VVDF-----EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEE-----ECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEE-----eCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 6665 368999999999974 568899999999999998755455667889999999999999 678999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc--CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+|++||+++......+... +...+..+.|+| ++.+|++|+.||.|++||++..+.+..+ ..|...|.+++
T Consensus 164 ~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~----~~h~~~v~~~~ 235 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTG----QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAV 235 (304)
T ss_dssp EEEEEETTCSSCSEEEECC----CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE----ECCSSCEEEEE
T ss_pred eEEEEECCCCCccceeccC----CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee----CCCCCCEEEEE
Confidence 9999999877655443322 223588888876 6789999999999999999887766554 46899999999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCce
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
|+|++++|++|+.||+|++|++...
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999997543
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-42 Score=283.00 Aligned_cols=239 Identities=54% Similarity=1.070 Sum_probs=205.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+++++|++.... ........+.+|.+.|.++.|++++ .+++++.|++|++||++++..
T Consensus 102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 102 TCAYAPSGNYVACGGLDNICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECccCC---CcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE
Confidence 57899999999999999999999986532 2233456678999999999999864 489999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...|.+++++| +++++++++.|+.|++||++. ......+.+|...|.+++|+|++++|++++.|++
T Consensus 177 ~~~~-----~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 177 TTTF-----TGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEE-----cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 7665 36889999999997 567899999999999999975 3456778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++.+..+. .......+.+++|+|+++++++|+.||.|++||....+....+ ..|.++|.+++|+|
T Consensus 250 v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~s~ 322 (340)
T 1got_B 250 CRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTD 322 (340)
T ss_dssp EEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEEEECT
T ss_pred EEEEECCCCcEEEEEc---cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe----ecCCCcEEEEEEcC
Confidence 9999999877654432 1222346999999999999999999999999998877665444 46999999999999
Q ss_pred CCCeEEEeECCCcEEEEe
Q 024451 242 DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~ 259 (267)
+|++|++||.||.|+||+
T Consensus 323 dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEcCCccEEecC
Confidence 999999999999999996
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6e-42 Score=281.28 Aligned_cols=244 Identities=43% Similarity=0.890 Sum_probs=206.0
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++|+|+|..|++++.|+++++|++..... .........+.+|...|.++.|+|++ ..|++++.|++|++||++++.
T Consensus 110 ~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKN-ENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CEEEECTTSSEEEEESTTSEEEEEECCCCTT-CCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEEEecccc-ccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCe
Confidence 3689999999999999999999999865321 11223445677899999999999975 579999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
....+ .+|...+.++.+.+. ++.++++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.|
T Consensus 188 ~~~~~-----~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 188 LLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp EEEEE-----ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEE-----cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 76665 368889999999875 3578999999999999999854 4677788999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
++|++||++..+....+.. ......+.+++|+|++.++++|+.|+.|++||+..++.+..+ ..|...|.+++|
T Consensus 262 ~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l----~~h~~~v~~l~~ 334 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL----FGHENRVSTLRV 334 (354)
T ss_dssp SCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE----CCCSSCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE----ECCCCcEEEEEE
Confidence 9999999998766544321 122346899999999999999999999999999877665443 479999999999
Q ss_pred CCCCCeEEEeECCCcEEEEe
Q 024451 240 SADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~ 259 (267)
+|+|++|++|+.||+|++|+
T Consensus 335 spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 335 SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999995
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-42 Score=280.79 Aligned_cols=240 Identities=19% Similarity=0.242 Sum_probs=194.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++ .|++++.||+|++||+..... .......+.+|++.|++++|+|++ .+|++|+.|++|++||++++..
T Consensus 87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~---~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 87 DLTWVGER-GILVASDSGAVELWELDENET---LIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEEECTTSS---CEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEeCCC-eEEEEECCCEEEEEeccCCCc---eeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 57899985 588999999999999875321 111223456899999999999976 5899999999999999999987
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe--eccccceeEEEEecC-CCEEEEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPD-GNRFGTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~ 158 (267)
...+ .+|...|.+++|++.+..++++++.|+.|++||++... ....+ ..|...+.+++|+|+ ++++++|+.
T Consensus 162 ~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 162 LSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp EEEE-----CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred EEEE-----cCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 7766 47999999999998777789999999999999997543 44444 245567899999995 578899999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
|++|++||+++++.+..+.. +...|.+++|+|++ ++|++|+.||.|++||...++... . ..|.+.|.++
T Consensus 236 dg~v~~wd~~~~~~~~~~~~-----h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~----~~H~~~V~~v 305 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAV-----HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S----QAHRDFVRDA 305 (344)
T ss_dssp TSEEEEEESCC--CCEEEEC-----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E----CCCSSCEEEE
T ss_pred CCcEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E----cCCCCCEEEE
Confidence 99999999999887765532 23469999999998 578999999999999998776543 2 4799999999
Q ss_pred EECCCCC-eEEEeECCCcEEEEecCc
Q 024451 238 GLSADGS-ALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 238 ~~~p~~~-~l~sgs~dg~i~~w~~~~ 262 (267)
+|+|+++ +|++||.||+|++|++..
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999986 577999999999999754
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.8e-42 Score=286.27 Aligned_cols=237 Identities=23% Similarity=0.373 Sum_probs=205.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++|+.|++|++||+.... ..+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.+...
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce
Confidence 67899999999999999999999987532 456788999999999999975 5899999999999999988766
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...|.+++|+|. +.++++++.|+.|++||++.. ..+..+.+|...|.++.++|+++++++++.|++
T Consensus 185 ~~~~-----~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 185 IRTM-----HGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp EECC-----CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEE-----cCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 5544 478899999999974 568899999999999999754 467788899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--------------------CCEEEEEEeCCeEEEEeCCccceee
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--------------------GRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
|++||+++++....+.. +...|.+++|+|+ +.++++|+.||.|++||+..++.+.
T Consensus 258 v~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 258 VRVWVVATKECKAELRE-----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp EEEEETTTCCEEEEECC-----CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECCCCceeeEecC-----CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999998876554422 3346999999986 6789999999999999998877665
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+ ..|...|.+++|+|+|++|++|+.||.|++|++..
T Consensus 333 ~~----~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 333 TL----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EE----ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred EE----ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 54 46889999999999999999999999999999754
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-41 Score=284.64 Aligned_cols=235 Identities=25% Similarity=0.440 Sum_probs=204.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++|+.|++|++||+... .+.+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYC 226 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSS-------CEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 5789999999999999999999998642 3567788999999999999975 5899999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC------------
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD------------ 149 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------------ 149 (267)
...+ .+|...+.++.+++ ++.++++++.|+.|++||++.. .....+.+|...|.++.|+|+
T Consensus 227 ~~~~-----~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 227 VKTF-----TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp EEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred EEEE-----eCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 6665 36888999999986 5678999999999999999753 456678899999999999996
Q ss_pred --------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 150 --------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 150 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
+.++++|+.|++|++||+++++.+..+.. +...|.+++|+|++++|++|+.||.|++||....+.+.
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 67899999999999999999887665532 23469999999999999999999999999998776655
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+ ..|...|++++|+|++++|++||.||+|++|++
T Consensus 375 ~~----~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 375 TL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EE----ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EE----cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 44 468899999999999999999999999999974
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.5e-41 Score=271.12 Aligned_cols=248 Identities=19% Similarity=0.266 Sum_probs=195.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+|++|++++.|++|++||+.... ......+.+|.++|++++|+|. .+.+|++|+.|++|++||++++.
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 57899999999999999999999986421 1245678899999999999763 34689999999999999998763
Q ss_pred --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecC-------
Q 024451 81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPD------- 149 (267)
Q Consensus 81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~------- 149 (267)
....+ .+|...|.+++|+|.. +.++++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 89 ~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 89 WSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred eEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 22222 4688899999999752 57899999999999999875422 24567789999999999996
Q ss_pred ------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC---CEEEEEEeCCeEEEEeCCccce-
Q 024451 150 ------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKV- 219 (267)
Q Consensus 150 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~- 219 (267)
+++|++|+.|++|++||+++++........ ...+...|.+++|+|++ .+|++|+.|+.|++||......
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 579999999999999999876522111111 12344579999999985 8999999999999999865321
Q ss_pred -eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 220 -VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 220 -~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..... ....|...|.+++|+|+|++||+++.||.|+||+..
T Consensus 243 ~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLL-KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEES-SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeee-ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 11111 113577899999999999999999999999999864
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=272.85 Aligned_cols=235 Identities=18% Similarity=0.306 Sum_probs=203.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++.++++++.|++|++||+... .....+.+|...+.+++|+|++ .+|++++.|+.|++||++++..
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~-------~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENG-------KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCC-------CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCce
Confidence 5789999999999999999999998652 2445667888889999999976 5899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ ..|...+.+++++| +++++++++.|+.|++||++. .+.+..+.+|...|.+++|+|++++|++++.|++
T Consensus 157 ~~~~-----~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 157 EYSL-----DTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp EEEE-----ECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred eEEe-----cCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 6554 24677899999996 567899999999999999975 4567778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++....+. .+...|.+++|+|++.+|++|+.||.|++||+.+.+.+..+ ..|.+.|.+++|+|
T Consensus 230 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLS-----GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF----FDHQDQVWGVKYNG 300 (321)
T ss_dssp EEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECT
T ss_pred EEEEECCCcceeEEEc-----CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----cCCCCcEEEEEECC
Confidence 9999999877655432 23457999999999999999999999999999888776655 46889999999999
Q ss_pred CCCeEEEeECCCcEEEEec
Q 024451 242 DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~ 260 (267)
++++|++++.||.|++|+.
T Consensus 301 ~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999985
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=273.32 Aligned_cols=240 Identities=20% Similarity=0.370 Sum_probs=201.2
Q ss_pred ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+++|+|+ +.+|+||+.|++|++|++.... ......+.+|...|.+++|+|++ .++++++.|++|++||+.
T Consensus 37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp EEEEC-------CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETT
T ss_pred EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECC
Confidence 5788874 6799999999999999986421 22345688999999999999975 589999999999999999
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
++.....+. .|...+.+++|+| +++++++++.|+.|++|+++.. .....+..|...+.+++|+|++++|++++
T Consensus 111 ~~~~~~~~~-----~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 111 NGKQIKSID-----AGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESG-KKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp TTEEEEEEE-----CCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTC-SEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEe-----CCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCC-ceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 987766553 4666788899986 5678899999999999999754 35566778888999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
.|+.|++||+++++.+..+. .+...|.+++|+|++++|++|+.||.|++||++..+....+ ..|...|.++
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~ 254 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL----SGHASWVLNV 254 (321)
T ss_dssp TTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE----CCCSSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE----cCCCCceEEE
Confidence 99999999999987665542 23346899999999999999999999999999877665444 4689999999
Q ss_pred EECCCCCeEEEeECCCcEEEEecCce
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|+|++++|++|+.|++|++|++...
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999999999999998643
No 11
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.3e-40 Score=267.83 Aligned_cols=242 Identities=21% Similarity=0.378 Sum_probs=199.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|++|++||..... ....+..|...|.+++|+|++ .++++|+.|+.|++||+.+...
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC
Confidence 57899999999999999999999986422 445677899999999999975 5899999999999999987531
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..... ....+|...+.++.+++. + .+++++.|+.|++||++. ......+.+|.+.|.+++|+|+++++++++.|++
T Consensus 132 ~~~~~-~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 132 NVRVS-RELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp SCEEE-EEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cceeE-EEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEECCC-CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 11110 112478899999999864 3 478999999999999975 4466778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++....+.. +...|.+++|+|++++|++|+.||.|++||++..+.+..+. ...+...|.+++|+|
T Consensus 208 v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 208 AKLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS--HDNIICGITSVSFSK 280 (340)
T ss_dssp EEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CTTCCSCEEEEEECT
T ss_pred EEEEECCCCeeEEEEcC-----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--cCCcccceEEEEECC
Confidence 99999998876655422 33469999999999999999999999999998776554432 123445799999999
Q ss_pred CCCeEEEeECCCcEEEEecCc
Q 024451 242 DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+|++|++|+.||.|++|++..
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEECCCCeEEEEEccc
Confidence 999999999999999999744
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-40 Score=273.50 Aligned_cols=241 Identities=19% Similarity=0.294 Sum_probs=191.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+++ +++++.||+|++||+...... ........+|.+.|++++|+|++ .+|++|+.|++|++||++++..
T Consensus 99 ~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~---~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 99 DVAWVSEKG-ILVASDSGAVELWEILEKESL---LVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp EEEEETTTE-EEEEETTSCEEEC-----------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCC-EEEEECCCEEEEeecccccee---EEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 578999987 456788999999998653211 11222456899999999999976 5899999999999999999887
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPD-GNRFGTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 159 (267)
...+ .+|...|.++++++....++++++.|+.|++||++...... .....|...+.+++|+|+ +.+|++|+.|
T Consensus 174 ~~~~-----~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 174 LKSY-----NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp EEEE-----CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred EEEE-----cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 7666 36889999999998777788999999999999997543221 123356778999999997 5689999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+.|++||+++++....+.. +...|.+++|+|++ ++|++|+.||.|++||+..++.+.. ..|.+.|++++
T Consensus 249 ~~i~~wd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-----~~H~~~V~~va 318 (357)
T 4g56_B 249 GNVSLVNIKNPDSAQTSAV-----HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-----LSHRDFVTGVA 318 (357)
T ss_dssp SCEEEEESSCGGGCEEECC-----CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-----CCCSSCEEEEE
T ss_pred cceeEEECCCCcEeEEEec-----cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-----CCCCCCEEEEE
Confidence 9999999998877655432 23469999999987 5789999999999999988776543 26899999999
Q ss_pred ECC-CCCeEEEeECCCcEEEEecCc
Q 024451 239 LSA-DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p-~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+| ++++|++||.||+|++|++..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCC
Confidence 999 799999999999999999754
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.4e-40 Score=265.95 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=196.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|++|++||+... .....+.+|...|.+++|+|++ .++++|+.|++|++||+....
T Consensus 70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~- 140 (319)
T 3frx_A 70 DCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQC- 140 (319)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCE-
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-------CeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-
Confidence 5789999999999999999999998653 2456788999999999999975 589999999999999997543
Q ss_pred EEEeCCccccCCccceEEEEEeCCC-----CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSN-----SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
...+ .+|...+.++.+.|.. ...+++++.|+.|++||++. ......+.+|...|.+++|+|++++|+++
T Consensus 141 ~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 141 LATL-----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp EEEE-----CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred EEEE-----eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 3333 3688899999998642 34789999999999999975 34566778999999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc----cccCCccc
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG----SLQNSHEG 232 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~ 232 (267)
+.|++|++||+++++.+..+.. ...+.+++|+|++.+++++.. ..+++|++........+. .....|..
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA------QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC------CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred eCCCeEEEEECCCCcEEEEecC------CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCc
Confidence 9999999999998877655432 135899999999999998865 459999987665443322 11234667
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+.+++|+|+|++|++|+.||.|++|++.
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 89999999999999999999999999864
No 14
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=273.87 Aligned_cols=248 Identities=19% Similarity=0.164 Sum_probs=191.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC---CCCC-CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT---DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~---~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+++|+|||++|++++ |+++++||..... .... ..........|...|.+++|+|++ .+++|+.||+|+|||++
T Consensus 35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELD 111 (344)
T ss_dssp EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEEC
T ss_pred EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEecc
Confidence 578999999999887 7788888742100 0000 001111223456789999999963 68899999999999999
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEe
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTG 156 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 156 (267)
+++....... ...+|...|.+++|++ +++++++++.|+.|++||++. .+.+..+.+|...|.+++|+|++ .+|+++
T Consensus 112 ~~~~~~~~~~-~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 112 ENETLIVSKF-CKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp TTSSCEEEEE-EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCceeEeec-cccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence 8764433321 1247999999999996 567899999999999999975 45678889999999999999987 478999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
+.|++|++||+++++....+... .+...+.+++|+|+ ++++++|+.||.|++||+++.+.+..+ ..|...|.
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~----~~h~~~v~ 261 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS----AVHSQCVT 261 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE----ECCSSCEE
T ss_pred ccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE----cCCCCCEE
Confidence 99999999999988766543221 12235889999985 568899999999999999888776554 46899999
Q ss_pred EEEECCCC-CeEEEeECCCcEEEEecCc
Q 024451 236 CLGLSADG-SALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 236 ~~~~~p~~-~~l~sgs~dg~i~~w~~~~ 262 (267)
+++|+|++ ++||+||.|++|+||++..
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 99999998 5899999999999999754
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.4e-40 Score=272.48 Aligned_cols=243 Identities=24% Similarity=0.464 Sum_probs=196.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|++|++||+... .....+.+|...|++++|+|++ .+|++++.|++|++||+.++..
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCee
Confidence 5789999999999999999999998642 2556788999999999999976 5799999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-------eccccceeEEEEecCCCEEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-------HGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~ 154 (267)
...+. +...+.++++++.+++++++++.|+.|++||++... ....+ .+|...|.+++|+|++++++
T Consensus 200 ~~~~~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 SLTLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEE------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEE------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 65542 456788999998678899999999999999987533 33333 57889999999999999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEE-------eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYY-------QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
+++.|++|++||+++........ ......+...|.+++|++++.+|++|+.||.|++||...++.+..+
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l---- 348 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML---- 348 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE----
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE----
Confidence 99999999999997643211000 0000123356999999999999999999999999999887766544
Q ss_pred CCccceEEEEEECC------CCCeEEEeECCCcEEEEecCce
Q 024451 228 NSHEGRITCLGLSA------DGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 228 ~~~~~~v~~~~~~p------~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
..|...|.+++|+| ++++|++||.||+|+||++...
T Consensus 349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 46899999999986 6889999999999999997543
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=268.76 Aligned_cols=255 Identities=21% Similarity=0.329 Sum_probs=196.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+++++|+..... ......+.+|...|.+++|+|++ .+|++|+.|++|++||+.++..
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSC
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCC
Confidence 57899999999999999999999986421 23456788999999999999975 5899999999999999987533
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
.... ....+|...|.+++|+|. ++++++++.|+.|++||.+... .....+.+|...|.+++|+|++++|++++.|+
T Consensus 140 ~~~~--~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 140 YECV--SVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp EEEE--EEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEE--EEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 2211 112468889999999974 5688999999999999986433 23456789999999999999999999999999
Q ss_pred cEEEEeCCCCeee------------EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee----ee-c
Q 024451 161 TCRLFDIRTGHQL------------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV----LN-L 223 (267)
Q Consensus 161 ~i~iwd~~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~-~ 223 (267)
+|++||....... ..... ....+...|.+++|+|++..|++++.|+.|++|+....... .. .
T Consensus 217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICT-LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp CEEEEEEECTTCTTCCCCC---CEEEEEEE-ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred eEEEeccccCCCCccceeeccCCccceeEE-ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 9999996432110 11111 11113457999999999999999999999999997543211 00 1
Q ss_pred ccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCceEec
Q 024451 224 GSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 224 ~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
......|...|.+++|+|++ .+||+||.||+|++|++...+++
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 11235789999999999998 49999999999999998776654
No 17
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.8e-41 Score=271.31 Aligned_cols=248 Identities=19% Similarity=0.245 Sum_probs=193.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+|++|++++.|++|++||+.... ......+.+|.+.|++++|+|. ++.+|++|+.|++|++||++++.
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 57899999999999999999999986421 1234568899999999999753 34689999999999999998763
Q ss_pred --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecC------
Q 024451 81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPD------ 149 (267)
Q Consensus 81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~------ 149 (267)
....+ .+|...|.+++|+|.. +.++++++.|+.|++||++.... ....+.+|...|.++.|+|+
T Consensus 93 ~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 93 WEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred ceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 22222 4688999999999753 56899999999999999875322 13445688899999999997
Q ss_pred -----------CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEEEEeC
Q 024451 150 -----------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 150 -----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~i~d~ 214 (267)
+++|++++.|++|++||++......... ....+...|.+++|+|++ .+|++|+.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~--~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ--KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE--CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceee--ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 4789999999999999997543211111 112344579999999986 79999999999999998
Q ss_pred CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
...............|.+.|.+++|+|++++||+|+.||.|+||+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 65211000001113578899999999999999999999999999864
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2e-39 Score=260.85 Aligned_cols=238 Identities=22% Similarity=0.375 Sum_probs=196.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|++|++||+... .....+.+|...|.+++|+|++ .+|++|+.|++|++||++++..
T Consensus 60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCC-------cEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc
Confidence 5789999999999999999999998653 2456788999999999999976 5899999999999999987633
Q ss_pred E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451 82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD 158 (267)
Q Consensus 82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 158 (267)
. ..+ .+|...|.+++|+|.+..++++++.|+.|++||++..........+|...+..+.|+| +++++++++.
T Consensus 132 ~~~~~-----~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 132 LEQTF-----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEEEE-----CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhhh-----cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 2 333 4789999999999877788999999999999999765444444456778899999987 6789999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|++|++||+++++.+..+.. +...|.+++|+|++++|++|+.||.|++||..+.+....+ ..|.+.+.+++
T Consensus 207 D~~i~iWd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----~~~~~~~~~~~ 277 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCVATLEG-----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIA 277 (304)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE----CCSSSSEEEEE
T ss_pred CCeEEEEeCCCCccceeeCC-----CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec----cCCCccEEEEE
Confidence 99999999999887665532 2346999999999999999999999999999888776554 45778999999
Q ss_pred ECCCCC--eEEEeECCCcEEEEecCc
Q 024451 239 LSADGS--ALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p~~~--~l~sgs~dg~i~~w~~~~ 262 (267)
|+|++. ++++|+.| .+.+|++..
T Consensus 278 ~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 278 THPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp ECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred ECCCCCceEEEEecCC-ceEEEEecc
Confidence 999875 58887755 566776654
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=264.49 Aligned_cols=250 Identities=24% Similarity=0.346 Sum_probs=184.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-- 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-- 79 (267)
+++|+|++++|++++.|++|++||................+.+|...|.+++|+|++ .+|++|+.|++|++||+...
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC
Confidence 578999999999999999999999864321112234556788999999999999975 58999999999999999532
Q ss_pred --eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEE
Q 024451 80 --LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFG 154 (267)
Q Consensus 80 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~ 154 (267)
.....+ .+|...|.+++|+| ++.++++++.|+.|++||.+... ..+..+.+|...|.+++|+|+ +..++
T Consensus 142 ~~~~~~~~-----~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 142 EYECISVL-----QEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCEEEEEE-----CCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred CeEEEEEe-----ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 222233 46889999999997 46789999999999999976432 356778899999999999998 67899
Q ss_pred EeeCCCcEEEEeCCCCee----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc--eeeecccccC
Q 024451 155 TGSDDGTCRLFDIRTGHQ----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQN 228 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~ 228 (267)
+++.|++|++||++.+.. ...........+...|.+++|++++ .|++++.||.|++||...++ .... ...
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~---~~~ 291 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK---RAL 291 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE---ESC
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec---ccc
Confidence 999999999999865411 0011111111244579999999655 88999999999999976543 1211 123
Q ss_pred Cccc-eEEEEEECC--CCCeEEEeECCCcEEEEecCc
Q 024451 229 SHEG-RITCLGLSA--DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 229 ~~~~-~v~~~~~~p--~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.|.. .|.+++|+| ++++||+||.||+|+||++..
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 5766 899999999 789999999999999999753
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.7e-40 Score=269.78 Aligned_cols=247 Identities=17% Similarity=0.183 Sum_probs=190.7
Q ss_pred ceeeCCCCCeEEEccC------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451 2 TCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 75 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd 75 (267)
+++|+|||++|++++. |+++++|+...... .........+|...|.+++|+|++ .+++++.|++|++||
T Consensus 47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~---~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd 121 (357)
T 4g56_B 47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP---NESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWE 121 (357)
T ss_dssp EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC-
T ss_pred EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc---ceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEee
Confidence 5789999999999997 78899998754221 112233445788999999999964 467889999999999
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEE
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFG 154 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 154 (267)
+.++....... ....+|...|.+++|+| +++++++++.|+.|++||++. ......+.+|...|.+++|+|+++ +++
T Consensus 122 ~~~~~~~~~~~-~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 122 ILEKESLLVNK-FAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp -------CCCC-EEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred ccccceeEEEe-eccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 98765433221 11246899999999996 567889999999999999975 456778889999999999999874 789
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
+++.|++|++||+++++....+.. ......+.+++|+|++ .+|++|+.|+.|++||++..+.+..+ ..|...
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~----~~~~~~ 271 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDF---CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS----AVHSQN 271 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCC---TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE----CCCSSC
T ss_pred eeccCCceEEEECCCCceeeeeee---ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE----ecccee
Confidence 999999999999998775543211 2233468999999974 68899999999999999887766544 468889
Q ss_pred EEEEEECCCC-CeEEEeECCCcEEEEecCce
Q 024451 234 ITCLGLSADG-SALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 234 v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~ 263 (267)
|.+++|+|++ ++||+|+.|++|+||++..-
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999987 68999999999999997543
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=264.71 Aligned_cols=248 Identities=21% Similarity=0.280 Sum_probs=194.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|++|++||+..... ........+|...|.+++|+|++ .+|++|+.|+++++||+.++..
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSW----ICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDF 95 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEE----EEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-E
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcc----eeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCe
Confidence 578999999999999999999999864210 00112346899999999999975 5899999999999999987642
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
.... ...+|...|.+++|+| +++++++++.|+.|++||++... .....+.+|...|.+++|+|++++|++++.|
T Consensus 96 ~~~~---~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 96 ECVT---TLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp EEEE---EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred EEEE---EccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 2211 1247999999999997 56789999999999999987533 2345677899999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee------------eccccc
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL------------NLGSLQ 227 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~------------~~~~~~ 227 (267)
++|++||.++++....... ..+...|.+++|+|++++|++|+.||.|++||........ ....+.
T Consensus 172 ~~i~~w~~~~~~~~~~~~~---~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATL---EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp SCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred CcEEEEEecCCCEEEEEEe---cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence 9999999987653321111 2234579999999999999999999999999963321110 001112
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..|...|.+++|+|++..|++++.|+.|++|+..
T Consensus 249 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 3488899999999999999999999999999864
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-39 Score=259.72 Aligned_cols=240 Identities=22% Similarity=0.369 Sum_probs=198.0
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++ ++|++++.|++|++|++....... ....+.+.+|...|.++.|+|++ .+|++|+.|++|++||+.++.
T Consensus 22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC
Confidence 57899865 899999999999999986422110 12345788999999999999975 589999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC------CEEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG------NRFG 154 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~ 154 (267)
....+ .+|...|.++++++ ++.++++++.|+.|++||++ ......+.+|...|.++.|.|.. ..++
T Consensus 99 ~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 99 TYQRF-----VGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp EEEEE-----ECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred eeEEE-----ccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 76655 46899999999986 56789999999999999986 34567788999999999999854 4899
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 234 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 234 (267)
+++.|+.|++||+++.+....+. .+...|.+++|+|++++|++|+.||.|++||+...+.+..+. +..+|
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~v 240 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-----AQDEV 240 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-----CCSCE
T ss_pred EEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCcE
Confidence 99999999999999876554432 234579999999999999999999999999998877665542 34679
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.+++|+|++.+|++++. +.+++|++...
T Consensus 241 ~~~~~sp~~~~la~~~~-~~i~v~~~~~~ 268 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATA-TGIKVFSLDPQ 268 (319)
T ss_dssp EEEEECSSSSEEEEEET-TEEEEEEETTE
T ss_pred EEEEEcCCCCEEEEEcC-CCcEEEEeCcC
Confidence 99999999999998875 55999987653
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-39 Score=281.83 Aligned_cols=247 Identities=21% Similarity=0.322 Sum_probs=199.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~ 77 (267)
+++|+|+|++|++|+.|++|++||+.... ......+.+|.+.|.+++|+|++ ++|++++.+ +.|++||..
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~~-----~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~ 137 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTT-----HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTG 137 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSSTT-----CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTC
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCCc-----ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCC
Confidence 57899999999999999999999985321 12345678999999999999986 467777765 478888853
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
+ .... ..+|...|.+++|+|.....+++++.|+.|++||.+. .+....+.+|...|.+++|+|++++|++++
T Consensus 138 ~--~~~~-----l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 138 T--SNGN-----LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp C--BCBC-----CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred C--Ccce-----ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 3 2222 2579999999999986555799999999999999864 445677889999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----------
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG----------- 224 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----------- 224 (267)
.|++|++||+.+++....+.... ...+...|.+++|+|++++|++++.|+.|++||+.+.+....+.
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 99999999998887655432100 01345679999999999999999999999999987665432211
Q ss_pred ----------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 225 ----------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 225 ----------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.....|...|.+++|+|+|++|++++.|++|++|++..
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 11236889999999999999999999999999999753
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-38 Score=259.05 Aligned_cols=241 Identities=20% Similarity=0.314 Sum_probs=191.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++.+|++++.|++|++||+... .....+.+|...|.+++|+|++ .+|++++.|++|++||+.....
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK 152 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce
Confidence 5789999999999999999999998653 2456788999999999999976 5899999999999999975432
Q ss_pred EEEeCCccccCCccceEEEEEeCCC---------CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSN---------SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 152 (267)
.. . ....+|...+.++.++|.. ..++++++.|+.|++||.. ......+.+|...|.+++|+|++++
T Consensus 153 ~~-~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 153 FS-S--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp EE-C--CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ee-e--ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCE
Confidence 22 1 1123688889999998754 2589999999999999954 3456677899999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee--eccc-----
Q 024451 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS----- 225 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~----- 225 (267)
|++++.|+.|++||++........... ...|.+++|+|++.++++| .|+.+++||+.+.+... .+..
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EEEEcCCCeEEEEECCCCcccceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 999999999999999543322222211 1358999999999888755 68889999987654322 1110
Q ss_pred --ccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 226 --LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 226 --~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
....|...|.+++|+|+|++|++|+.||.|++|++.
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 112578889999999999999999999999999864
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=258.25 Aligned_cols=243 Identities=20% Similarity=0.360 Sum_probs=196.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|+|++.|++|++||..... ....+..|...|.+++|+|++ .++++++.|+.+++|++.....
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-------~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFTTN-------KEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCC-------cceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccc
Confidence 68899999999999999999999976421 344566788899999999976 5899999999999999864311
Q ss_pred EEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451 82 TSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD 158 (267)
Q Consensus 82 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 158 (267)
... .......+|...+.++.|++. +..+++++.|++|++||++. .+.+..+.+|...|.+++|+| ++++|++++.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 000 000112368889999999864 56789999999999999975 446778889999999999987 4689999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|++|++||+++++....+. .+...|.+++|+|++..|++|+.|+.|++||++..+.+..+.. ..+...+.+++
T Consensus 219 Dg~v~~wd~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~ 291 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK--ESIIFGASSVD 291 (354)
T ss_dssp TSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--TTCCSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC--CCcccceeEEE
Confidence 9999999999988765542 2334799999999999999999999999999987665433321 22345789999
Q ss_pred ECCCCCeEEEeECCCcEEEEecC
Q 024451 239 LSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|+|++++|++|+.|+.|++|++.
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT
T ss_pred EeCCCCEEEEEECCCcEEEEECC
Confidence 99999999999999999999974
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.1e-38 Score=252.11 Aligned_cols=239 Identities=27% Similarity=0.485 Sum_probs=198.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+++++|+.... .....+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCCc-------ccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcE
Confidence 5789999999999999999999998642 2456678999999999999975 6899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...+.++.+++ +++++++++.|+.|++||++.. +....+..|...|.++.|+|+++++++++.|+.
T Consensus 100 ~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 100 LKTL-----KGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp EEEE-----ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEE-----cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 6655 36888999999997 4578899999999999999753 456778889999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc---eEEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG---RITCLG 238 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~ 238 (267)
|++||+++++.+..+.. .....+..++|+|+++++++++.||.|++||+...+.+..+. .|.. .+....
T Consensus 173 i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~ 244 (312)
T 4ery_A 173 CRIWDTASGQCLKTLID----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT----GHKNEKYCIFANF 244 (312)
T ss_dssp EEEEETTTCCEEEEECC----SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC----SSCCSSSCCCEEE
T ss_pred EEEEECCCCceeeEEec----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE----ecCCceEEEEEEE
Confidence 99999998876554432 223468999999999999999999999999998877665442 2332 233333
Q ss_pred ECCCCCeEEEeECCCcEEEEecCce
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
..+++++|++|+.||.|++|++...
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCc
Confidence 4578999999999999999997543
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-37 Score=250.98 Aligned_cols=240 Identities=23% Similarity=0.433 Sum_probs=196.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|++|++||+... .....+.+|...|.++.|+|++ .++++++.|++|++||++++..
T Consensus 70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 70 DVAWSSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCCCEEEEECCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE
Confidence 5789999999999999999999998653 2556788999999999999975 5899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ ..|...+.++.+++ +++++++++.|+.|++||++...........+...+..++|+|+++++++++.|+.
T Consensus 142 ~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 215 (312)
T 4ery_A 142 LKTL-----PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215 (312)
T ss_dssp EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE
T ss_pred EEEe-----cCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe
Confidence 6655 35788899999986 56788999999999999997544333333456678999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++.+..+..+.. ....+......+++.++++|+.||.|++||+...+.+..+ ..|.+.|.+++|+|
T Consensus 216 i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p 289 (312)
T 4ery_A 216 LKLWDYSKGKCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHP 289 (312)
T ss_dssp EEEEETTTTEEEEEECSSCC--SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECS
T ss_pred EEEEECCCCcEEEEEEecCC--ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecC
Confidence 99999998877655432211 1112233333467889999999999999999887766554 46889999999999
Q ss_pred CCCeEEEeE--CCCcEEEEecC
Q 024451 242 DGSALCTGS--WDTNLKIWAFG 261 (267)
Q Consensus 242 ~~~~l~sgs--~dg~i~~w~~~ 261 (267)
++++|++++ .|+.|++|+.+
T Consensus 290 ~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTTTCCEEEEECC
T ss_pred cCCceEEEEccCCccEEEecCC
Confidence 999999997 69999999854
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-37 Score=254.09 Aligned_cols=241 Identities=20% Similarity=0.289 Sum_probs=187.6
Q ss_pred ceee-----CC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451 2 TCAF-----SP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 75 (267)
Q Consensus 2 ~~~~-----~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd 75 (267)
+++| ++ ++++|++|+.|++|++||+...............+.+|...|.+++|+|++ .++++|+.|++|++||
T Consensus 26 ~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWD 104 (343)
T ss_dssp EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEE
T ss_pred heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEE
Confidence 4566 66 899999999999999999865321111122345688999999999999975 5899999999999999
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---eccccceeEEEEecCC--
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPDG-- 150 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~-- 150 (267)
++++.....+ .+|...|.+++|+| +++++++++.|+.|++||+.. . ..... .+|...|.++.|+|++
T Consensus 105 ~~~~~~~~~~-----~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 105 LRTGTTYKRF-----VGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILG-E-CKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp TTSSCEEEEE-----ECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSS-C-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred CCCCcEEEEE-----cCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccC-C-ceeeeecccCCCceeeeeeecccccc
Confidence 9988766555 36899999999997 456789999999999999863 2 22222 2688899999999986
Q ss_pred --------CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451 151 --------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 151 --------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
.++++++.|+.|++||.. .+....+. . +...|.+++|+|++++|++|+.||.|++||+........
T Consensus 177 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-~----h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK-A----HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE-C----CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred ccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc-C----ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 789999999999999954 33333322 2 234699999999999999999999999999844322211
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
. ..+...|.+++|+|++++++++ .|+.|++|++..
T Consensus 251 ~----~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~ 285 (343)
T 2xzm_R 251 E----FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMT 285 (343)
T ss_dssp E----EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSS
T ss_pred e----ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCC
Confidence 1 1244579999999999988755 588899999754
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-37 Score=250.12 Aligned_cols=249 Identities=26% Similarity=0.371 Sum_probs=195.4
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+ +++|+|||.|++|++||+...... .....+.+.+|...|.++.|+|++ .+|++++.|+.|++|+.....
T Consensus 43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc
Confidence 6789997 689999999999999998753211 122456788999999999999975 589999999999999987653
Q ss_pred eEEEeCC--------------------------------------ccccCCccceEEEEEeCCC-CeEEEEecCCCeEEE
Q 024451 81 RTSVFGG--------------------------------------EFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARL 121 (267)
Q Consensus 81 ~~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~i 121 (267)
....... ....+|...+..+++.+.. ..++++++.|+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 3221100 0123577778888887543 456789999999999
Q ss_pred EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
||++. .+....+.+|.+.|.+++|+|++++|++++.|+.|++||+++.+.+..+.. ...+.+++|+|++.++
T Consensus 200 ~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~- 271 (340)
T 4aow_A 200 WNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG------GDIINALCFSPNRYWL- 271 (340)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------SSCEEEEEECSSSSEE-
T ss_pred EECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC------CceEEeeecCCCCcee-
Confidence 99875 446777889999999999999999999999999999999998877654432 1358999999987655
Q ss_pred EEEeCCeEEEEeCCccceeeeccc-----ccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 202 AGYSNGDCYVWDTLLAKVVLNLGS-----LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+++.|+.|++||++....+..+.. ....|...|++++|+|+|++|++|+.||.|+||++.
T Consensus 272 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 555799999999887655433321 123688899999999999999999999999999874
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=251.80 Aligned_cols=240 Identities=19% Similarity=0.281 Sum_probs=182.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+|+ +|++++.|++|++||+.... ......+ .+ |...|.+++|+|++ .+|++|+.|++|++||++..
T Consensus 19 ~~~~s~~--~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 19 SFDFSQG--ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp EEEEETT--EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---
T ss_pred eeccCCC--EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccC
Confidence 4678876 99999999999999986421 1223333 34 99999999999975 58999999999999998532
Q ss_pred -------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeeccccceeEEEEecC
Q 024451 80 -------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 80 -------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~ 149 (267)
.....+ .+|...|.+++|+| +++++++++.|+.|++||++... ..+..+.+|...|.++.|+|+
T Consensus 91 ~~~~~~~~~~~~~-----~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 91 ADRTFEMDLLAII-----EGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp ----CCCEEEEEE-----C----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred cCccccceeEEEE-----cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 122222 47999999999997 46789999999999999985322 345667899999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccC--CCEEEEEEeCCeEEEEeCCccce-----e
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKV-----V 220 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~-----~ 220 (267)
+++|++++.|++|++||..++. .+..+ ..+...|.+++|+|+ +..|++|+.|+.|++||+..... .
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVL-----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEc-----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 9999999999999999987653 32222 223457999999998 67899999999999999764311 0
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.....+...|...|.+++|+|++ +|++|+.||.|++|+..
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 01111223488999999999765 89999999999999863
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.8e-39 Score=266.41 Aligned_cols=246 Identities=20% Similarity=0.357 Sum_probs=196.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++|+.|++|++||.... .....+.+|...|.+++|+|++ .+|++|+.|+.+++||+.+...
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALTS-------QKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTT-------EEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC-------ccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcc
Confidence 6789999999999999999999998652 2456778999999999999976 5899999999999999975421
Q ss_pred EE--EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-----eccccceeEEEEec-CCCEE
Q 024451 82 TS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFFP-DGNRF 153 (267)
Q Consensus 82 ~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l 153 (267)
.. ........+|...+.++.+.+.....+++++.|+.|++||++... .+..+ .+|...|.++.|+| ++++|
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 221 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMF 221 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence 10 000122357889999999988766778999999999999997543 34444 57889999999987 78999
Q ss_pred EEeeCCCcEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc---CC
Q 024451 154 GTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ---NS 229 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---~~ 229 (267)
++|+.|++|++||++.. +....+. .+...|.+++|+|++++|++|+.||.|++||++.++.+..+.... ..
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred EEEECCCeEEEEECCCCCcceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 99999999999999854 3333332 233468999999999999999999999999998876654432111 12
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+...|.+++|+|+|++|++|+.||.|++|+..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 33458999999999999999999999999963
No 32
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-37 Score=254.77 Aligned_cols=244 Identities=24% Similarity=0.400 Sum_probs=188.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc------------------CCeeeEEEEEEecCCCeeEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------------------GHKGYVSCCQYVPDEDTHLI 63 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~------------------~h~~~v~~~~~~~~~~~~l~ 63 (267)
+++|+|+|++|++++ |+++++|++.... ....+. .+...|.+++|+|++ .+|+
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~g~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~ 139 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSDGS-------LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLA 139 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTTCC-------EEEEECC-----------------CCCCBEEEEEECTTS-SEEE
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecCCC-------EEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEE
Confidence 688999999999976 7899999986432 111222 233459999999976 5899
Q ss_pred EeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeE
Q 024451 64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 143 (267)
Q Consensus 64 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 143 (267)
+|+.|++|++||++++.....+ .+|...|.+++|++. +..+++++.|+.|++||++... ....+ .+...+.+
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~ 211 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMIL-----QGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQ-CSLTL-SIEDGVTT 211 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEE-----ccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCe-eEEEE-EcCCCcEE
Confidence 9999999999999988766655 468999999999974 5678999999999999997543 33334 35678999
Q ss_pred EEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 144 VKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 144 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
++|+| +++++++++.|+.|++||+++++.+..+.... ...+...|.+++|+|++++|++|+.||.|++||+......
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 99999 89999999999999999999887655442111 1234567999999999999999999999999998654321
Q ss_pred ee--------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 221 LN--------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 221 ~~--------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.. .......|...|.+++|+|++++|++|+.||.|++|+...
T Consensus 292 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred ccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 10 0001136888999999999999999999999999999753
No 33
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-37 Score=270.03 Aligned_cols=238 Identities=18% Similarity=0.269 Sum_probs=193.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++ ++++++|++..+. ....+.+|...|++++|+|++ .+|++|+.|++|+|||+.++..
T Consensus 23 ~~~~spdg~~l~~~~-~~~v~l~~~~~~~-------~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETTCSS-------CCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC
T ss_pred EEeeCCCCCEEEeCC-CCEEEEecCCCcc-------cCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc
Confidence 578999999999987 5699999986422 456788999999999999976 6899999999999999975432
Q ss_pred --EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEE
Q 024451 82 --TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFG 154 (267)
Q Consensus 82 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 154 (267)
...+ .+|...|.+++|+|. ++.+++++.+ +.|++||.. .....+.+|...|.+++|+|+++ .|+
T Consensus 94 ~~~~~~-----~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 94 ILKTTI-----PVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp CEEEEE-----ECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred eeeEee-----cccCCceEEEEECCC-CCEEEEEECCCCceeEEEEeeCC---CCcceecCCCCCceEEEECCCCCeEEE
Confidence 2222 468889999999975 5566776654 478999853 24556789999999999999987 599
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccCCcc
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQNSHE 231 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~~ 231 (267)
+++.|++|++||..+++....+. .+...|.+++|+|++++|++|+.|+.|++||...++....+.. ....|.
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred EEeCCCeEEEEECCCCeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 99999999999998876554432 2345799999999999999999999999999887765544311 012699
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.|.+++|+|+|++|++|+.|++|++|++..
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 9999999999999999999999999999754
No 34
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-37 Score=275.00 Aligned_cols=243 Identities=27% Similarity=0.400 Sum_probs=195.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|++|++||+... ...+.+.+|...|.+++|+|++ .+|++++.|++|++||......
T Consensus 435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWDGELRLWDLAAG-------VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCC-------cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcc
Confidence 5789999999999999999999998652 2456788999999999999976 5799999999999999876544
Q ss_pred EEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
.... ....+|...|.++++++.. ...+++++.|+.|++||++. .+....+.+|.+.|.+++|+|+++++++++.|+
T Consensus 507 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 507 YTIS--EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp EEEC--SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeec--cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 3332 1224688899999999754 35789999999999999974 445677889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc-------------
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ------------- 227 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~------------- 227 (267)
+|++||+++++.+..+. ....+.+++|+|++.+++++. ++.|++||+...+.+..+....
T Consensus 584 ~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 584 VVLLWDLAEGKKLYSLE------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp BCEEEETTTTEEEECCB------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred eEEEEECCCCceEEEec------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccc
Confidence 99999999887653321 123689999999998887764 6679999998776554332100
Q ss_pred --CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 228 --NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 228 --~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+...+.+++|+|+|++|++|+.||+|++|+++.
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 01112478999999999999999999999999864
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-37 Score=254.42 Aligned_cols=249 Identities=19% Similarity=0.268 Sum_probs=199.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++++|++++.|++|++||+.... ......+.+|...|++++|+|+ ++.+|++++.|+.|++||+.++.
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 67899999999999999999999986321 2355678899999999999865 24689999999999999999875
Q ss_pred --eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEec--------
Q 024451 81 --RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP-------- 148 (267)
Q Consensus 81 --~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~-------- 148 (267)
....+ ..|...+.+++|++.. +.++++++.|+.|++||++... .....+.+|...|.++.|+|
T Consensus 91 ~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 91 WSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred eeEeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 33332 3588899999999752 6789999999999999997542 23445678999999999999
Q ss_pred -----CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCcccee
Q 024451 149 -----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 149 -----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
+++++++++.|+.|++||+++++......... ..+...|.+++|+|+ +.+|++++.||.|++||+......
T Consensus 166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 69999999999999999998765432221111 223457999999999 899999999999999998765321
Q ss_pred ee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 221 LN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 221 ~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.. .......|...|.+++|+|++++|++++.||.|++|++.
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 11 111123488899999999999999999999999999875
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-38 Score=266.67 Aligned_cols=247 Identities=19% Similarity=0.240 Sum_probs=189.7
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ++++|++|+.||+|++||+.... ......+.+|.+.|++++|+|.++.+|++|+.|++|++||++++.
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 689999 56799999999999999986532 223445679999999999999766789999999999999998765
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 159 (267)
....... ..+...+.++++++ +++++++|+.||.|++||++. +.+..+.+|...|.+++|+|+++ ++++++.|
T Consensus 199 ~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 199 LRVFASS---DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEEEECC---SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred eeEEecc---CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 4333321 23445577888986 567899999999999999863 45667889999999999999876 78899999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec----------------
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---------------- 223 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------------- 223 (267)
+.|++||+++.+....+.. ...+...|.+++|+|++.+|++|+.||.|++||+...+....+
T Consensus 273 ~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp SBCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred ceeeEEecccccccceEEE--eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 9999999987654332211 1234457999999999999999999999999997653211100
Q ss_pred -----------------------------------------ccccCCccceEEEE-EECCCCCeEEEeECCCcEEEEecC
Q 024451 224 -----------------------------------------GSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 224 -----------------------------------------~~~~~~~~~~v~~~-~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..+...|...|.++ +|+|+|++||+|+ |+.|+||++.
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 00012355566776 6999999999886 8899999874
Q ss_pred c
Q 024451 262 G 262 (267)
Q Consensus 262 ~ 262 (267)
.
T Consensus 430 ~ 430 (435)
T 4e54_B 430 E 430 (435)
T ss_dssp -
T ss_pred c
Confidence 3
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.8e-37 Score=267.54 Aligned_cols=229 Identities=28% Similarity=0.528 Sum_probs=194.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+++++|+... .....+.+|...|.+++|+|++ ++|++++.|+.|++||... ..
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~--------~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~ 418 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QL 418 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTC--------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-CE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcCCC--------CEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CE
Confidence 578999999999999999999999542 2456778999999999999976 5899999999999999654 33
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...|.+++++| +++++++++.|+.|++||.. .+....+.+|...|.+++|+|+++++++++.|+.
T Consensus 419 ~~~~-----~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~ 490 (577)
T 2ymu_A 419 LQTL-----TGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490 (577)
T ss_dssp EEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEe-----cCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 3333 36888999999986 56788999999999999964 3467778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||. +++.+..+.. +...|.+++|+|++++|++++.||.|++||. .++.+..+ ..|.+.|++++|+|
T Consensus 491 i~iw~~-~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~----~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 491 VKLWNR-NGQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVWGVAFSP 559 (577)
T ss_dssp EEEEET-TSCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE----ECCSSCEEEEEECT
T ss_pred EEEEcC-CCCEEEEEeC-----CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE----cCCCCCEEEEEEcC
Confidence 999996 4555554432 2346999999999999999999999999995 44544433 47999999999999
Q ss_pred CCCeEEEeECCCcEEEEe
Q 024451 242 DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~ 259 (267)
||++|++++.|++|++|+
T Consensus 560 dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEeCCCEEEEeC
Confidence 999999999999999996
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=272.10 Aligned_cols=244 Identities=14% Similarity=0.024 Sum_probs=181.1
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-----CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-----EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+|+++.+++++.|++|+||++.... ........+.+|.+.|.+++|+|+ +..+|++++.|++|++||+.++.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~---~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTST---LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------------CEEEEEEEEETTT---CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred chhhhhhccCCCCceEEEEEccCCC---CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 4555667778899999999986422 111112345678899999999996 13589999999999999997653
Q ss_pred eE---E-Ee--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEE--EEecCC-C
Q 024451 81 RT---S-VF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV--KFFPDG-N 151 (267)
Q Consensus 81 ~~---~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~ 151 (267)
.. . .. ......+|...+.+++|+++ ..+++|+.||+|++||++....+...+.+|...|.++ .|+|++ .
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 21 0 00 00122468899999999864 3789999999999999975544556678999999999 567887 8
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
+|++++.|++|+|||+++++....+..+.. ...+.+++|+|+++.+++++.|+.|++||++....+..+ ..|.
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l----~gH~ 397 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL----VSRE 397 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE----EECS
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee----ecCC
Confidence 999999999999999998766544433221 123678999999999999999999999999877654433 3589
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+.|++++|+|+|++|++||.||+|++|++.
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 999999999999999999999999999863
No 39
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=245.59 Aligned_cols=242 Identities=18% Similarity=0.260 Sum_probs=200.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+.|++||+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.++..
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 6789999999999999999999998652 2556788999999999999965 5899999999999999988754
Q ss_pred EEEeCCcc----------------------------------------------------ccCCcc--ceEEEEEeCCCC
Q 024451 82 TSVFGGEF----------------------------------------------------QSGHTA--DVLSVSISGSNS 107 (267)
Q Consensus 82 ~~~~~~~~----------------------------------------------------~~~~~~--~i~~~~~~~~~~ 107 (267)
...+.... ...|.. .+.++++++ ++
T Consensus 109 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 187 (369)
T 3zwl_B 109 VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KG 187 (369)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GG
T ss_pred EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CC
Confidence 44331000 001111 677777876 45
Q ss_pred eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 187 (267)
Q Consensus 108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 187 (267)
+.+++++.|+.|++||++........+..|...|.+++|+|++++|++++.|+.|++||+++++....+. ....
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~ 261 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE------TDCP 261 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CSSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec------CCCC
Confidence 6788999999999999986456677888899999999999999999999999999999999887765543 1246
Q ss_pred EEEEEEccCCCEEEEEEeCC--------------eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 188 VTSIAFSISGRLLFAGYSNG--------------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 188 v~~~~~s~~~~~l~~g~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
+..++|+|+++++++++.++ .+++||....+.+..+ ..|...|.+++|+|++++|++++.||
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV----QGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE----ECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe----ecccCcEEEEEECCCCCEEEEEcCCC
Confidence 89999999999999999888 8999999887766554 46889999999999999999999999
Q ss_pred cEEEEecCc
Q 024451 254 NLKIWAFGG 262 (267)
Q Consensus 254 ~i~~w~~~~ 262 (267)
.|++|++..
T Consensus 338 ~v~iw~~~~ 346 (369)
T 3zwl_B 338 FIRLHHFEK 346 (369)
T ss_dssp EEEEEEECH
T ss_pred eEEEEECcc
Confidence 999999754
No 40
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.8e-36 Score=246.18 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=194.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++++|++++.||+|++||+.... ........+.+|...|.+++|+|. ++.+|++++.|++|++||++++.
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDT---SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSS---CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCC---CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 68899999999999999999999987532 122345667899999999999985 24689999999999999998762
Q ss_pred ---------eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEe-------------ecc
Q 024451 81 ---------RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTF-------------HGH 137 (267)
Q Consensus 81 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~ 137 (267)
....+ .+|...+.+++|++.. +.++++++.|+.|++||++.... ...+ ..|
T Consensus 93 ~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 93 EECSGRRWNKLCTL-----NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp CTTSSCSEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSC
T ss_pred ccccccCcceeeee-----cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCc
Confidence 23332 3688899999999752 67889999999999999875432 1111 257
Q ss_pred ccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEE
Q 024451 138 EGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCY 210 (267)
Q Consensus 138 ~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~ 210 (267)
...+.++.|+|+ ++++++++.|+.+.+|+...++..... . ...+...|.+++|+|++ ++|++|+.||.|+
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-K--LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-E--CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-e--cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 788999999997 899999999999988887766542221 1 12344579999999998 8999999999999
Q ss_pred EEeCCcccee------------------------------------------eecccccCCccceEEEEEECCCCCeEEE
Q 024451 211 VWDTLLAKVV------------------------------------------LNLGSLQNSHEGRITCLGLSADGSALCT 248 (267)
Q Consensus 211 i~d~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~s 248 (267)
+||+...... .........|.+.|.+++|+|++++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9998653110 0011112468899999999999999999
Q ss_pred eECCCcEEEEecCc
Q 024451 249 GSWDTNLKIWAFGG 262 (267)
Q Consensus 249 gs~dg~i~~w~~~~ 262 (267)
|+.||.|++|++..
T Consensus 324 ~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 324 AGDDGKVRLWKATY 337 (351)
T ss_dssp EETTSCEEEEEECT
T ss_pred ecCCCcEEEEecCc
Confidence 99999999999863
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-38 Score=258.55 Aligned_cols=245 Identities=12% Similarity=0.142 Sum_probs=186.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 80 (267)
+++|+|+|++|++++.|++|++||+.... ......+.+|...|.+++|+|++ .+|++++.|++|++||+.++.
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------C
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCc
Confidence 68899999999999999999999987421 12456788999999999999975 589999999999999998765
Q ss_pred --eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec-cccceeEEEEecCCCEEEE
Q 024451 81 --RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 81 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~ 155 (267)
....+ .+|...+.+++|++ +++++++++.|+.|++||++.... ....+.+ |...|.+++|+|+++++++
T Consensus 90 ~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 90 WKQTLVL-----LRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CCCEEEC-----CCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred eeeeeEe-----cccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 22222 46889999999997 566789999999999999875432 3566666 9999999999999999999
Q ss_pred eeCCCcEEEEeCCCCe--------------eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 156 GSDDGTCRLFDIRTGH--------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
++.|+.|++||++..+ ......... .+...|.+++|+|++++|++|+.||.|++||+...+...
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 9999999999986322 011111111 345579999999999999999999999999988776521
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
........|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 1111224688899999999999999999876666 66543
No 42
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=248.49 Aligned_cols=256 Identities=21% Similarity=0.345 Sum_probs=198.4
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcc-------cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV-------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 73 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i 73 (267)
+++|+| ++++|++++.||+|++||+....... .... .....+|...|.+++|+|++..++++++.|+.|++
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-eEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 688999 99999999999999999987643111 0000 11124699999999999966678999999999999
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
||+.++.....+. +...+.++.+.+. +..++++++.|+.|++||++.. .....+.+|...|.+++|+|+++
T Consensus 127 wd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 127 WDTNTLQTADVFN------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp EETTTTEEEEEEE------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCCSCEEEEEECSSCT
T ss_pred eeCCCCccceecc------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCCCcEEEEEECCCCC
Confidence 9999987666552 5567888888764 3348999999999999999754 45677888999999999999988
Q ss_pred -EEEEeeCCCcEEEEeCCCCeeeEEEEeec-----------CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 152 -RFGTGSDDGTCRLFDIRTGHQLQVYYQQH-----------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 152 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
.+++++.|+.|++||+++++........+ ...+...|.+++|+|++++|++++.||.|++||+...+.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 58999999999999998765322221100 022445799999999999999999999999999876543
Q ss_pred eeec-------------------------------------------ccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451 220 VLNL-------------------------------------------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256 (267)
Q Consensus 220 ~~~~-------------------------------------------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~ 256 (267)
.... ......|.+.|.+++|+|++++|++|+.||.|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 280 TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 2110 001135888999999999999999999999999
Q ss_pred EEecCceEe
Q 024451 257 IWAFGGYRR 265 (267)
Q Consensus 257 ~w~~~~~~~ 265 (267)
+|++.....
T Consensus 360 iw~~~~~~~ 368 (408)
T 4a11_B 360 AWVPSLYEP 368 (408)
T ss_dssp EEEECC---
T ss_pred EEeCCCCCc
Confidence 999876543
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.3e-37 Score=256.27 Aligned_cols=241 Identities=19% Similarity=0.297 Sum_probs=195.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+.+++||..... ....+..| ..+....|+|++ .+|++++.|+.|++||+.++..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~-------~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRD-------GSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEE-------TTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEE
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccc-------eeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcce
Confidence 47899999999999999999999986522 23344555 344445666754 6899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...|.+++|++ +++++++++.|+.|++||++.. +....+.+|...|.+++|+|++++|++++.|++
T Consensus 132 ~~~~-----~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 132 REID-----QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 204 (420)
T ss_dssp EEET-----TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eeec-----ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 5543 46899999999997 4668899999999999999754 456778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEE---------------------EEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVT---------------------SIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~---------------------~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
|++||+++++....+.... .....+. +++|+|+++++++|+.||.|++||+...+.+
T Consensus 205 v~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp EEEEETTTTEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEeECCCCceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999988766553321 1222344 4455789999999999999999999887765
Q ss_pred eecccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecCce
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~~ 263 (267)
... ...|...|.+++|+|+++ +|++|+.||.|++|++...
T Consensus 283 ~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 283 IQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEE---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EEc---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 544 246888999999999999 9999999999999998653
No 44
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.4e-36 Score=239.91 Aligned_cols=243 Identities=23% Similarity=0.364 Sum_probs=191.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|++++ +|++ |.|++|++||+.... ......+.+|...|++++|+|++ +++++|+.|++|++||+++++.
T Consensus 30 ~l~WS~~~-~lAv-g~D~tV~iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 30 LVDWSSGN-VLAV-ALDNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CEEECTTS-EEEE-EETTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCC-EEEE-EeCCEEEEEECCCCC-----EEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCcee
Confidence 36899876 5665 469999999986522 11222356788999999999976 5899999999999999999887
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...+.++... ..++++++.++.+++|+..........+.+|...+..+.+.++++++++++.|++
T Consensus 102 ~~~~-----~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 102 LRNM-----TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp EEEE-----ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEe-----cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 7665 3688888877665 3578999999999999987666667788899999999999999999999999999
Q ss_pred EEEEeCCCCeeeE----EEEe---------ecC------------------------------CCCCCcEEEEEEccCCC
Q 024451 162 CRLFDIRTGHQLQ----VYYQ---------QHG------------------------------ENEIPHVTSIAFSISGR 198 (267)
Q Consensus 162 i~iwd~~~~~~~~----~~~~---------~~~------------------------------~~~~~~v~~~~~s~~~~ 198 (267)
|++||+++++... .... ... ......+..++|++++.
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence 9999998653210 0000 000 00123467788999988
Q ss_pred EEEEEE--eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 199 LLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 199 ~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.+++++ .|+.|++||+.+++.+..+ ..|.+.|++++|+|+|++|||||.||+|+||++..+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 887765 7899999999888877655 4699999999999999999999999999999987653
No 45
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=257.64 Aligned_cols=255 Identities=22% Similarity=0.383 Sum_probs=192.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCC----CCCCCcccccccCCe------------eeEEEEEEecCCC-eeEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTD----KDGNLPVSRMLSGHK------------GYVSCCQYVPDED-THLIT 64 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~----~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~-~~l~s 64 (267)
+++|+|+|++|++|+.||.|++|++..... ......+...+.+|. ..|.+++|+|++. .++++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 688999999999999999999999875331 112233466788998 8899999999753 57999
Q ss_pred eeCCCeEEEEeCCCCeeEEE-e----------------------------------CCccccCCccceEEEEEeCCCCeE
Q 024451 65 SSGDQTCVLWDITTGLRTSV-F----------------------------------GGEFQSGHTADVLSVSISGSNSRM 109 (267)
Q Consensus 65 ~~~d~~v~iwd~~~~~~~~~-~----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 109 (267)
++.|++|++||+.++..... + ......+|...|.+++|++ ++++
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 191 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYET 191 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCE
Confidence 99999999999876432110 0 0011357999999999997 4667
Q ss_pred EEEecCCCeEEEEeCCCcccceE-------EeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCee----eEEEE
Q 024451 110 FVSGSCDSTARLWDTRVASRAVR-------TFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQ----LQVYY 177 (267)
Q Consensus 110 ~~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~ 177 (267)
++++ .|+.|++||++....... .+.+|...|.+++|+|++ ++|++++.|+.|++||+++++. ...+.
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 8888 799999999974333333 255899999999999998 9999999999999999998765 33332
Q ss_pred eecCCC-------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccc---------------eE
Q 024451 178 QQHGEN-------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEG---------------RI 234 (267)
Q Consensus 178 ~~~~~~-------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~---------------~v 234 (267)
.+.... +...|.+++|+|++++|++++. +.|++||+.. .+.+..+ ..|.. .+
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY----QVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE----ESCGGGTTTHHHHHHTSGGGCC
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee----eccccccccccccccccccccc
Confidence 211100 0126999999999999999988 9999999876 4444332 22332 13
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
..++|+|++++|++|+.||.|++|++..-
T Consensus 346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp CCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred eEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 34999999999999999999999998543
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-37 Score=255.56 Aligned_cols=250 Identities=13% Similarity=0.262 Sum_probs=203.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 80 (267)
+++|+|++++|++++.|+.|++|++...... ......+.+|...|.+++|+|++..+|++++.|+.|++||+.++.
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred EEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 6789999999999999999999998752211 125567889999999999999856789999999999999998765
Q ss_pred -----eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------ccceeEEEEecC
Q 024451 81 -----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPD 149 (267)
Q Consensus 81 -----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~ 149 (267)
..... .....|...+.+++|++....++++++.|+.|++||++.. .....+..| ...|.+++|+|+
T Consensus 149 ~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 149 SPSNYTPLTP--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp CTTTCCCBCC--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred cccccccccc--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCC
Confidence 22211 1224688899999999865788999999999999999753 345555555 788999999998
Q ss_pred C-CEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451 150 G-NRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 150 ~-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 224 (267)
+ .++++++.|+ .|++||+++++....... ..+...+.+++|+| ++.+|++++.||.|++||+...+.+..+
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~- 301 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLN---QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF- 301 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC---SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCCcEEee---cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-
Confidence 7 6899999999 999999988632211111 02345799999999 8999999999999999999887766554
Q ss_pred cccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCceE
Q 024451 225 SLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~~~ 264 (267)
..|...|.+++|+|++ ++|++++.||.|++|++....
T Consensus 302 ---~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 302 ---PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ---ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred ---cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 4688899999999999 899999999999999986543
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-35 Score=236.67 Aligned_cols=240 Identities=22% Similarity=0.360 Sum_probs=197.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccc--ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM--LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+|++++|++++ |+.+++|++...... ..... ..+|...|.++.|+|++ .++++++.|+.|++||+.++
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNK----SPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCC----SCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCce----eeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC
Confidence 678999999999999 999999998753211 11222 23799999999999975 58999999999999999887
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
...... ....|...+.++++++ +++++++++.|+.|++||++. .+....+.+|...+.+++|+|+++++++++.|
T Consensus 130 ~~~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 130 TPRIKA---ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp --EEEE---EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred Ccceee---ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 532221 1135788899999997 567889999999999999975 45677788899999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+.|++||+++++....+. ....+.+++|+|+++++++++.+|.|++||....+... . ..|...|.+++|
T Consensus 205 g~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~v~~~~~ 273 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L----HLHESCVLSLKF 273 (337)
T ss_dssp SEEEEEETTTTEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E----CCCSSCEEEEEE
T ss_pred CcEEEEECCCCceEeeec------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E----cCCccceeEEEE
Confidence 999999999887655432 12368999999999999999999999999988765432 2 468889999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCce
Q 024451 240 SADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|++++|++++.||.|++|++...
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCCEEEEecCCCcEEEEECCCC
Confidence 999999999999999999997543
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.6e-37 Score=251.01 Aligned_cols=243 Identities=22% Similarity=0.315 Sum_probs=192.8
Q ss_pred ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+++|+|+ |++|++++.||+|++||+... .....+.+|...|.+++|+|.+..+|++++.|+.|++||+.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 5789998 779999999999999998652 24566789999999999999555689999999999999999
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc---------------------------
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--------------------------- 130 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--------------------------- 130 (267)
++.....+.. ..+|...|.+++|++ +++++++++.|+.|++||++.....
T Consensus 147 ~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TDTLVAIFGG--VEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTEEEEEECS--TTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cCeEEEEecc--cccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 8877666521 136889999999997 5678899999999999998743211
Q ss_pred eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee--------------eEEEEeecCCCCCCcEEEEEEccC
Q 024451 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ--------------LQVYYQQHGENEIPHVTSIAFSIS 196 (267)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~ 196 (267)
.....+|...|.++.|+ ++++++++.|+.|++||+++.+. +..+ ..+...+.+++|+|+
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~ 296 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-----DYSQCDIWYMRFSMD 296 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-----ECSSCCSSCCCCEEC
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-----cccCCcEEEEEEcCC
Confidence 11223488999999998 77999999999999999987643 2111 112345788899999
Q ss_pred --CCEEEEEEeCCeEEEEeCCccceeeecccccCCc--cceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 197 --GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 197 --~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+++|++|+.||.|++||+...+...........| ...|.+++|+|++++|++|+.||.|++|++.
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999998765332111111334 7899999999999999999999999999863
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-35 Score=245.90 Aligned_cols=240 Identities=19% Similarity=0.308 Sum_probs=199.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|+.|++||... .....+.+|...|.++.|+|++ .+|++++.|+.|++||+.++..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE
Confidence 578999999999999999999999322 2456678999999999999975 5899999999999999988765
Q ss_pred EEEeCCc---------------------------------------------------cccCCccceEEEEEeCCCCeEE
Q 024451 82 TSVFGGE---------------------------------------------------FQSGHTADVLSVSISGSNSRMF 110 (267)
Q Consensus 82 ~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~~~~~~~~~ 110 (267)
...+... ....|...+.++++++. ++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCEE
Confidence 4433211 11257788999999974 5688
Q ss_pred EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEE
Q 024451 111 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 190 (267)
Q Consensus 111 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 190 (267)
++++.|+.|++||++. ......+.+|...|.++.|+|++ ++++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 263 ~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~i~~ 335 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----DGVPIFA 335 (425)
T ss_dssp EEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----TTCCEEE
T ss_pred EEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----CCccEEE
Confidence 9999999999999875 34567777899999999999999 999999999999999998876655432 2346999
Q ss_pred EEEccCCCEEEEEEeCCeEEEEeCCccc--------------------eeeecccccCCccc--eEEEEEECCCCCeEEE
Q 024451 191 IAFSISGRLLFAGYSNGDCYVWDTLLAK--------------------VVLNLGSLQNSHEG--RITCLGLSADGSALCT 248 (267)
Q Consensus 191 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~s 248 (267)
++|+|++++|++++.||.|++||+...+ .+..+ ..|.. .|.+++|+|++++|++
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY----QSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE----CCTTCCCCEEEEEECTTSSEEEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh----cCcccCCceEEEEccCCCceEEE
Confidence 9999999999999999999999998766 33333 35655 9999999999999999
Q ss_pred eECCCcEEEEecCc
Q 024451 249 GSWDTNLKIWAFGG 262 (267)
Q Consensus 249 gs~dg~i~~w~~~~ 262 (267)
++.||.|++|++.|
T Consensus 412 ~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 412 AYSLQEGSVVAIPG 425 (425)
T ss_dssp EESSSCCEEEECCC
T ss_pred EecCceEEEEeecC
Confidence 99999999999865
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=260.80 Aligned_cols=249 Identities=12% Similarity=0.092 Sum_probs=189.0
Q ss_pred ceeeCCC------CCeEEEccCCCeEEEeecCCCCCCC----CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeE
Q 024451 2 TCAFSPT------GQSVACGGLDSVCSIFNLNSPTDKD----GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71 (267)
Q Consensus 2 ~~~~~~~------g~~l~~~~~d~~v~~w~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v 71 (267)
+++|+|+ +.+|++++.||+|++||+....... ........+.+|...|++++|+|+ ..|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence 4788886 6799999999999999986532110 001123467899999999999985 379999999999
Q ss_pred EEEeCCCCee-EEEeCCccccCCccceEEEE-EeCCCC-eEEEEecCCCeEEEEeCCCcccceEEeecccc--ceeEEEE
Q 024451 72 VLWDITTGLR-TSVFGGEFQSGHTADVLSVS-ISGSNS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKF 146 (267)
Q Consensus 72 ~iwd~~~~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~ 146 (267)
++||++++.. ...+ .+|...|.+++ ..++++ +++++++.|++|++||++... ....+.+|.. .|.+++|
T Consensus 290 ~lWD~~~~~~~~~~~-----~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 290 AEFDLTDPEVPSFYD-----QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp EEEETTBCSSCSEEE-----ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEE
T ss_pred EEEECCCCCCceEEe-----ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEe
Confidence 9999986532 2222 46899999995 334454 789999999999999997533 3445556653 4789999
Q ss_pred ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-----c---
Q 024451 147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-----K--- 218 (267)
Q Consensus 147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-----~--- 218 (267)
+|+++.+++++.|++|++||++++.++..+.. +...|.+++|+|++++|++|+.||.|++||.... +
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-----H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~ 438 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-----RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS 438 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-----CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred CCCcCeEEEeCCCCcEEEEECcccccceeeec-----CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence 99999999999999999999998876655443 2347999999999999999999999999985321 0
Q ss_pred ------eeeecc--------------------------cccCCccceEEEEEECCCCC---eEEEeECCCcEEEEecCce
Q 024451 219 ------VVLNLG--------------------------SLQNSHEGRITCLGLSADGS---ALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 219 ------~~~~~~--------------------------~~~~~~~~~v~~~~~~p~~~---~l~sgs~dg~i~~w~~~~~ 263 (267)
.+..+. .....|..+|.+++|+|+++ .+|+|+.||.|+||.+.+-
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 010000 00124778999999999965 9999999999999998653
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-35 Score=264.30 Aligned_cols=241 Identities=26% Similarity=0.379 Sum_probs=195.6
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++ ++|+|++.|++|++|++....... ....+.+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.
T Consensus 387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAY--GVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV 463 (694)
T ss_dssp EEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--CEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--ccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 57888865 799999999999999987532111 12345688999999999999975 689999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE---eeccccceeEEEEecCC--CEEEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---FHGHEGDVNTVKFFPDG--NRFGT 155 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~~ 155 (267)
....+ .+|...|.+++|++. ++++++++.|+.|++||..... .... ..+|...|.++.|+|++ ..+++
T Consensus 464 ~~~~~-----~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 464 STRRF-----VGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp EEEEE-----ECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred ceeEE-----eCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 76655 469999999999974 5678999999999999975322 1211 24688899999999986 68999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
++.|++|++||+++.+....+. .+...|.+++|+|++++|++|+.||.|++||+...+.+..+ .+...|.
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~-----~~~~~v~ 606 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-----EANSVIH 606 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC-----BCSSCEE
T ss_pred EeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe-----cCCCcEE
Confidence 9999999999999877654432 23457999999999999999999999999999888766543 2456799
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+++|+|++.+|++++ |+.|++|++...
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 999999998888765 667999998653
No 52
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-35 Score=256.94 Aligned_cols=232 Identities=28% Similarity=0.501 Sum_probs=194.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+++.|++++.|+++++||.... ....+.+|...|.+++|+|++ .++++++.|+.|++||... ..
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~ 377 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QL 377 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC-CE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CE
Confidence 5789999999999999999999997531 345577899999999999976 5899999999999999654 33
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .+|...|.++++++ +++++++++.|+.|++||.. .+....+.+|...|.+++|+|+++++++++.|++
T Consensus 378 ~~~~-----~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 378 LQTL-----TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp EEEE-----ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEe-----cCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 3333 36888999999986 46678999999999999964 4467778899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||.. ++.+..+.. +...+.+++|+|++++|++++.|+.|++||. .++.+..+ ..|...|++++|+|
T Consensus 450 v~~w~~~-~~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~----~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 450 VKLWNRN-GQLLQTLTG-----HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL----TGHSSSVRGVAFSP 518 (577)
T ss_dssp EEEEETT-SCEEEEEEC-----CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE----ECCSSCEEEEEECT
T ss_pred EEEEECC-CCEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE----eCCCCCEEEEEEcC
Confidence 9999974 444443322 2346999999999999999999999999995 44544433 46889999999999
Q ss_pred CCCeEEEeECCCcEEEEecCc
Q 024451 242 DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+|++||+++.||.|++|+..+
T Consensus 519 dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTS
T ss_pred CCCEEEEEECcCEEEEEeCCC
Confidence 999999999999999999754
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-36 Score=249.49 Aligned_cols=235 Identities=13% Similarity=0.091 Sum_probs=174.6
Q ss_pred EEccCCCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEE--EeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 13 ACGGLDSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLI--TSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 13 ~~~~~d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
++++.|+++++|++....+....... ......+...+.+++|+|++. +++ +++.|++|+|||++++.....+
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~~~--- 173 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKFEI--- 173 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEEEE---
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEEEe---
Confidence 34567889999998653221100000 112234556789999999875 554 5568999999999998776654
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecCCCEEEEeeCCC----cEE
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDG----TCR 163 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~ 163 (267)
.|...|.+++|+| +++++++++.++ +++|+........ ....+|...|.+++|+|+++++++++.|+ .++
T Consensus 174 ---~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 174 ---ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp ---ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred ---CCCCceEEEEEcc-CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 3667899999996 567788887554 5555554443322 23456888999999999999999999887 688
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 243 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 243 (267)
+||+.......... .....+...|.+++|+|+|++|++|+.|+.|+|||+.+++.+..+ ...|..+|++++|+|||
T Consensus 249 ~~~~~~~~~~~~~~-~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~---~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 249 KISIKSGNTSVLRS-KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF---KQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEETTEEEEEEE-EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE---TTSSSSCEEEEEECTTS
T ss_pred ecccccceecceee-eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe---cCcccCCEEEEEECCCC
Confidence 89987665432111 111233457999999999999999999999999999988876543 25799999999999999
Q ss_pred CeEEEeECCCcEEEEec
Q 024451 244 SALCTGSWDTNLKIWAF 260 (267)
Q Consensus 244 ~~l~sgs~dg~i~~w~~ 260 (267)
++|||||.|++|+||++
T Consensus 325 ~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKL 341 (365)
T ss_dssp CEEEEEETTSEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEc
Confidence 99999999999999997
No 54
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-34 Score=235.25 Aligned_cols=234 Identities=20% Similarity=0.386 Sum_probs=196.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|+.|++||+.... ......+.+|...|.++.|+|++ .++++++.|+.|++||++++..
T Consensus 102 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~ 175 (337)
T 1gxr_A 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL 175 (337)
T ss_dssp EEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce
Confidence 57899999999999999999999986532 22445677899999999999965 5899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ ..|...+.++++++ +++.+++++.|+.|++||++... ....+ .+...+.+++|+|+++++++++.|+.
T Consensus 176 ~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 176 VRQF-----QGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEE-----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeee-----ecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCc-eEeee-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence 6655 35788999999997 45788999999999999997533 34444 47788999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++... + ..+...+.+++|+|+++++++++.||.|++||....+.... ..|...+.+++|+|
T Consensus 248 i~~~~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-----~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 248 VEVLHVNKPDKYQ-L-----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISV 316 (337)
T ss_dssp EEEEETTSSCEEE-E-----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECT
T ss_pred EEEEECCCCCeEE-E-----cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-----ecCCCcEEEEEECC
Confidence 9999998876432 1 12335799999999999999999999999999988776533 24778999999999
Q ss_pred CCCeEEEeECCCcEEEEec
Q 024451 242 DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~ 260 (267)
++++|++++.||.|++|++
T Consensus 317 ~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEE
Confidence 9999999999999999985
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=244.08 Aligned_cols=255 Identities=20% Similarity=0.287 Sum_probs=192.0
Q ss_pred ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe------cCCCeeEEEeeCCCeEE
Q 024451 2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV------PDEDTHLITSSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~~l~s~~~d~~v~ 72 (267)
+++|+|+ |++|++++.|+.|++||+.... .....+.+|...|.++.|. |+ +.+|++++.|+.|+
T Consensus 70 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVK 142 (357)
T ss_dssp EEECTTCCTTTCCEEEEETTSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEE
T ss_pred EEEEcCCCCCCceEEEecCCCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEE
Confidence 5789998 7999999999999999987532 1345678999999999764 54 45899999999999
Q ss_pred EEeCCCCe-eEEEeCCccccCCccceEEEEEeC---CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec
Q 024451 73 LWDITTGL-RTSVFGGEFQSGHTADVLSVSISG---SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 148 (267)
Q Consensus 73 iwd~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (267)
+||+.++. ....+... ...+...+.++.+.+ ++++++++++.|+.|++||++... ......|...|.++.|+|
T Consensus 143 vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDR 219 (357)
T ss_dssp EECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESC
T ss_pred EEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCC
Confidence 99998865 34444211 111244788888532 467789999999999999997543 244467889999999999
Q ss_pred ---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee---
Q 024451 149 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL--- 221 (267)
Q Consensus 149 ---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~--- 221 (267)
+++++++++.|+.|++||+++++....+.......+...|.+++|+|+++ ++++|+.||.|++||+.......
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 89999999999999999998765543332111112345799999999998 89999999999999986533210
Q ss_pred ------------ecccccCCccceEEEEEECCCCCeEE-EeECCCcEEEEecCceEec
Q 024451 222 ------------NLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 222 ------------~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~dg~i~~w~~~~~~~~ 266 (267)
........|.++|.+++|+|++++|+ +|+.||.|++|++..+.++
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC----
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcccC
Confidence 00011246889999999999999998 8999999999999877653
No 56
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.7e-37 Score=255.57 Aligned_cols=250 Identities=15% Similarity=0.118 Sum_probs=177.7
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec-------CCCeeEEEeeCCCeEEEEeCC
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-------DEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+.+++.+|++++.|++|++||....... .......+.||.+.|.+++|+| .++++|+||+.|++|+|||+.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 4567788999999999999998653211 1123456889999999999987 234789999999999999998
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce------------------------EE
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV------------------------RT 133 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~------------------------~~ 133 (267)
++.....+ .+|...+.+++|+|.+..++++++.|+.|++||++...... ..
T Consensus 175 ~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 175 DEGPILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp TTEEEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred CCceeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 77655443 35778899999998766789999999999999987532110 11
Q ss_pred eeccccceeEEEEe-cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC-------------CCCcEEEEEEcc--CC
Q 024451 134 FHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-------------EIPHVTSIAFSI--SG 197 (267)
Q Consensus 134 ~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~--~~ 197 (267)
..+|...+.++.|. |+++.+++++.|+++++||+..++....+....... .........|++ ++
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 24677788999987 799999999999999999998765443322111000 000111223443 34
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
.++++|+.||.|++||...++..... ..|..+|.+++|+|||++||+++.|| +.+|.+-|+.||
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~----~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~gf~~l 393 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIP----IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMGFTRL 393 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEE----EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGGGCC-
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEe----cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeCcccC
Confidence 46777888999999999877655433 35778999999999999999998655 777778888775
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.4e-36 Score=250.57 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=191.3
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
..|+|++++|++++.|+.|++||+... .....+.+|...|++++|+|++ .+|++++.|++|++||+.++...
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFN-------LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSC-------EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCc-------ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc
Confidence 368999999999999999999997642 2455678999999999999975 58999999999999999987665
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec---cc---------------------
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG---HE--------------------- 138 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~---~~--------------------- 138 (267)
..+ .+|...|.+++|++. ++++++++.|+.|++||++.. +....+.. |.
T Consensus 175 ~~~-----~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 175 RTL-----IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp EEE-----ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred eEE-----cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 554 368899999999974 668899999999999999754 34555543 22
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcc
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~ 217 (267)
..+.+++|+|+++++++++.|+.|++||+++++....+.. .+...+.+++|+|++. +|++|+.||.|++||+...
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3445555678899999999999999999998876654432 2335799999999999 9999999999999999876
Q ss_pred ce-eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 218 KV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 218 ~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+. +..+ ...|...|.++.+ |++++|++++.||.|++|++..
T Consensus 324 ~~~~~~~---~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEF---LINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TSCSEEE---EESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred cCchhhh---hccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 54 2222 2346778888865 5788999999999999999754
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-35 Score=242.77 Aligned_cols=241 Identities=15% Similarity=0.202 Sum_probs=197.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.|+.|++||+.... ......+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCee
Confidence 68899999999999999999999986421 22456778999999999999965 5899999999999999988764
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
...+. ...|...+.+++|++ +++++++++.|+.|++||++.... ......+|...|.+++|+|+++++++++.
T Consensus 87 ~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 87 KPTLV---ILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp EEEEE---CCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred eeeEE---eecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 43332 135788899999996 467889999999999999875432 12333578899999999999999999999
Q ss_pred CCcEEEEeCC------------------CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 159 DGTCRLFDIR------------------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 159 d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
|+.|++||++ .++....+. .+...+.+++|+|++++|++++.||.|++||+...+.+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999964 333333221 23457999999999999999999999999999887766
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+ ..|..+|.+++|+|++++|++| .|+.|++|++..
T Consensus 238 ~~~----~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 238 ATL----ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEE----ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEE----ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 554 3578899999999999999887 899999999754
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=254.76 Aligned_cols=256 Identities=14% Similarity=0.131 Sum_probs=203.7
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCC--CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+++|+|+ +++|++++.|++|++||+........ .........+|...|.+++|+|++..++++++.|+.|++||+++
T Consensus 118 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 118 TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp EEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 6789998 89999999999999999876431100 01112345689999999999998667899999999999999999
Q ss_pred CeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEEee-ccccceeEEEEec-CCCE
Q 024451 79 GLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFH-GHEGDVNTVKFFP-DGNR 152 (267)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~ 152 (267)
+.....+... ...+|...+.+++|++.+..++++++.|+ .|++||++........+. +|...|.+++|+| ++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence 8776665421 11234788999999987667899999998 999999986555667777 8999999999999 8999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecc-------
Q 024451 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG------- 224 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~------- 224 (267)
+++++.|+.|++||+++++.+..+.. +...+.+++|+|++ .++++++.||.|++||+...+......
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 352 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQFPA-----RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ 352 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEEEC-----SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred EEEEeCCCCEEEeeCCCCccceeecC-----CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence 99999999999999998877665432 23468899999999 899999999999999987654322110
Q ss_pred ------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 225 ------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 225 ------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+..|..++.+++|+|+|++|++|+.||.|+||++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred CCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 01112667888999999999999999999999998753
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.3e-36 Score=245.29 Aligned_cols=250 Identities=18% Similarity=0.265 Sum_probs=197.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|++|++||+.... ......+.+|...|.++.|+|++ .+|++++.|+.|++||++++..
T Consensus 57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~ 130 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQEND 130 (372)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTE-----EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTT
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEECCCCe-----eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCc
Confidence 57899999999999999999999985421 11233457799999999999975 5899999999999999987652
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-----------------cccceEEeeccccceeEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-----------------ASRAVRTFHGHEGDVNTV 144 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~ 144 (267)
..... ....+|...+.+++|++ +++++++++.|+.|++||++. .......+.+|...|.++
T Consensus 131 ~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 131 WWVCK-HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp EEEEE-EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred ceeee-eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence 11111 11246888999999997 567889999999999999631 234566777899999999
Q ss_pred EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc--cc--ee
Q 024451 145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AK--VV 220 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--~~--~~ 220 (267)
.|+|+++++++++.|+.|++||+++++.+..+.. +...+.+++|+|++.++++| .|+.+++||... ++ ..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-----ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-----SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-----CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEe
Confidence 9999999999999999999999998887665532 23469999999999999888 899999999876 31 00
Q ss_pred ee-----------------c----------------ccccCCccceEEEEEEC-CCC---CeEEEeECCCcEEEEecCce
Q 024451 221 LN-----------------L----------------GSLQNSHEGRITCLGLS-ADG---SALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 221 ~~-----------------~----------------~~~~~~~~~~v~~~~~~-p~~---~~l~sgs~dg~i~~w~~~~~ 263 (267)
.. + ..+...|..+|.+++|. ++| ++|++|+.||.|++|++...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 283 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred eccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 00 0 22234799999999976 677 99999999999999998654
Q ss_pred Ee
Q 024451 264 RR 265 (267)
Q Consensus 264 ~~ 265 (267)
++
T Consensus 363 ~~ 364 (372)
T 1k8k_C 363 ES 364 (372)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 61
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.9e-35 Score=247.52 Aligned_cols=255 Identities=23% Similarity=0.356 Sum_probs=199.2
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCC---CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+++|+|+ +.+|++++.||.|++|++...... .+.......+.+|...|++++|+|++..+|++|+.||+|++||+.
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 5789997 789999999999999998752111 112334567789999999999999876589999999999999998
Q ss_pred CCeeE--EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCC-E
Q 024451 78 TGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGN-R 152 (267)
Q Consensus 78 ~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~ 152 (267)
++... .........+|...|.+++|++.+..++++++.|+.|++||++... .....+..|...|.+++|+|+++ +
T Consensus 213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~ 292 (430)
T 2xyi_A 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292 (430)
T ss_dssp SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCE
Confidence 73210 0001112246888999999998778899999999999999998642 45667778999999999999887 6
Q ss_pred EEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee---------
Q 024451 153 FGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL--------- 221 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~--------- 221 (267)
+++++.|+.|++||+++.+ .+..+. . +...|.+++|+|++. ++++++.||.|++||+.......
T Consensus 293 l~tg~~dg~v~vwd~~~~~~~~~~~~-~----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 293 LATGSADKTVALWDLRNLKLKLHSFE-S----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp EEEEETTSEEEEEETTCTTSCSEEEE-C----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred EEEEeCCCeEEEEeCCCCCCCeEEee-c----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence 8899999999999998743 333332 2 234699999999985 68999999999999987622100
Q ss_pred -ecccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecC
Q 024451 222 -NLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 222 -~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~ 261 (267)
........|...|.+++|+|+++ +|++++.||.|++|++.
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 11112356888999999999999 89999999999999874
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.5e-35 Score=244.27 Aligned_cols=236 Identities=22% Similarity=0.377 Sum_probs=194.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++|+.|++|++||+... ...+.+.+|...+.++.+++ .++++|+.|+.+++||......
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCC-------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce
Confidence 6889999999999999999999998652 35677889999999998865 4799999999999999976533
Q ss_pred E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCC-CEEEE-
Q 024451 82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDG-NRFGT- 155 (267)
Q Consensus 82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~- 155 (267)
. ..+ .+|...+..+.+.+ .++++++++.|+.+++|+...... .......|...|.+++|+|.+ ..+++
T Consensus 222 ~~~~~-----~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 222 HVATL-----SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp EEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred eeEEe-----cccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence 2 222 46888899998886 467889999999999999864332 345566788999999999965 45554
Q ss_pred -eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE--eCCeEEEEeCCccceeeecccccCCccc
Q 024451 156 -GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 156 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
|+.|++|++||+++++....+.. ...+.++.|++++..+++++ .||.|++||..+.+.+..+ ..|.+
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~~------~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~ 365 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVDA------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTS 365 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEEC------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE----CCCSS
T ss_pred eecCCCEEEEEeCCccccceeecc------ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE----cCCCC
Confidence 45899999999999887665432 13588999999999988765 6899999999888877655 57999
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|++++|+|+|++|+|||.|++|+||++...
T Consensus 366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 366 RVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999998643
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-34 Score=245.96 Aligned_cols=234 Identities=25% Similarity=0.382 Sum_probs=196.6
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
++.+++++|++|+.||+|++||+... .....+.+|.+.|.+++|+|++ ++++|+.|++|++||++++....
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~ 197 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH 197 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCC-------cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEE
Confidence 45667889999999999999998652 2566788999999999999864 89999999999999999988776
Q ss_pred EeCCccccCCccceEEEEEeC-CCCeEEEEecCCCeEEEEeCCCcccc----------------------eEEeeccccc
Q 024451 84 VFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCDSTARLWDTRVASRA----------------------VRTFHGHEGD 140 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~d~~i~iwd~~~~~~~----------------------~~~~~~~~~~ 140 (267)
.+ .+|...|.++++.+ +++.++++++.|+.|++||++..... ...+.+|...
T Consensus 198 ~~-----~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 198 VF-----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp EE-----CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred EE-----CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 65 36889999999985 45678999999999999998753321 4456778888
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
+.++ +++++++++++.|+.|++||+++++.+..+. .+...+.+++|+|+++.+++|+.||.|++||+.+++.+
T Consensus 273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 8777 5678899999999999999999887765542 23356999999999999999999999999999888776
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
..+ ..|...|.+++|+ +++|++|+.||.|++|++....
T Consensus 346 ~~~----~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 346 YTL----QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp EEE----CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EEE----eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 655 4688999999998 5899999999999999986543
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-35 Score=265.39 Aligned_cols=239 Identities=21% Similarity=0.295 Sum_probs=205.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.||+|++||+... .....+.+|.+.|.++.|+|++ .+|++++.|+.|++||+.++..
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence 6789999999999999999999998642 2456778999999999999976 5899999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 160 (267)
...+ .+|...|.+++|++. ++.+++++.||.|++||+.........+.+|...|.+++|+| +++.+++++.|+
T Consensus 90 ~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 90 VVDF-----EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEE-----ECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEE-----ecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 6655 368889999999974 567889999999999999765456677888999999999999 889999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc--CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
.|++||+++++....+...+ ...+..++|+| ++.++++|+.||.|++||....+.+..+ ..|...|.+++
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~v~~~~ 235 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQ----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL----EGHMSNVSFAV 235 (814)
T ss_dssp EEEEEETTCSSCSEEEECCC----TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE----ECCSSCEEEEE
T ss_pred eEEEEECCCCcceeEEecCC----CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE----cCCCCCEEEEE
Confidence 99999998776655443322 24588999999 9999999999999999999887765544 45888999999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCc
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+|++++|++|+.||.|++|++..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999764
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.1e-35 Score=241.98 Aligned_cols=250 Identities=15% Similarity=0.210 Sum_probs=197.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC---CC---eeEEEeeCCCeEEEEe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---ED---THLITSSGDQTCVLWD 75 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~---~~l~s~~~d~~v~iwd 75 (267)
+++|+| ++|++++.||+|++|++..... ....+....+.+|...|.++.|+|+ ++ .+|++++.|+.|++||
T Consensus 21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 21 SVSACN--SFTVSCSGDGYLKVWDNKLLDN-ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp EEEECS--SEEEEEETTSEEEEEESBCCTT-CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred EEEecC--CeEEEEcCCCEEEEEECCCccc-ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 678988 8999999999999999876321 1123345677899999999999996 24 5899999999999999
Q ss_pred CCCCee-----EEEeCCccccCC-----ccceEEEEEe----CCCCeE-EEEecCCCeEEEEeCCC------cccceE--
Q 024451 76 ITTGLR-----TSVFGGEFQSGH-----TADVLSVSIS----GSNSRM-FVSGSCDSTARLWDTRV------ASRAVR-- 132 (267)
Q Consensus 76 ~~~~~~-----~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-~~s~~~d~~i~iwd~~~------~~~~~~-- 132 (267)
+.++.. ...+ ..| ...|.+++|+ +. +.. +++++.|+.|++||++. .. .+.
T Consensus 98 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~ 170 (397)
T 1sq9_A 98 ITREDETKKVIFEKL-----DLLDSDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWS 170 (397)
T ss_dssp EEECTTTCCEEEEEE-----CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCC
T ss_pred ccCCcccccccceee-----cccccccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCccccccccc-eeecc
Confidence 987654 3333 245 5889999999 64 456 89999999999999875 32 333
Q ss_pred ---Ee-------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC---CCcEEEEEEccCCCE
Q 024451 133 ---TF-------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRL 199 (267)
Q Consensus 133 ---~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~ 199 (267)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+... ..+ ...+.+++|+|++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTE
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc--ccccccCCccceEEECCCCCE
Confidence 45 3478899999999999 9999999999999999988766554320 002 346999999999999
Q ss_pred EEEEEeC---CeEEEEeCCccceeeecccc---------cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 200 LFAGYSN---GDCYVWDTLLAKVVLNLGSL---------QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 200 l~~g~~d---g~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
|++++.| |.|++||+...+.+..+... ...|...|.+++|+|++++|++++.||.|++|++....
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9999999 99999999887766554210 00188999999999999999999999999999986543
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.5e-35 Score=242.44 Aligned_cols=242 Identities=16% Similarity=0.146 Sum_probs=190.1
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++ ++|++++.|++|++||+.... ........+|...|.++.|+|++..+|++++.|+.|++||+.+..
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV 152 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTT-----CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 67899999 999999999999999987532 122223457999999999999656789999999999999998643
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 159 (267)
. ..+. ....|...+.++++++ +++++++++.|+.|++||++ ......+.+|...|.+++|+|+++ ++++++.|
T Consensus 153 ~-~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 153 I-QVFA--KTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp E-EEEE--CCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred e-EEEe--ccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 3 3332 1234567899999997 45688999999999999984 446777889999999999999998 99999999
Q ss_pred CcEEEEeCCC----CeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccc---cCCc-
Q 024451 160 GTCRLFDIRT----GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---QNSH- 230 (267)
Q Consensus 160 ~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~~- 230 (267)
+.|++||+++ +.....+ . +...+.+++|+| ++.+|++++.||.|++||+...+....+... ...|
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~-~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEM-P-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL 300 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEE-E-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTS
T ss_pred CEEEEEeCCCCCcccceEEEe-c-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccc
Confidence 9999999987 3333322 1 234799999999 9999999999999999998876544332110 0111
Q ss_pred ---------cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 231 ---------EGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 231 ---------~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+.+..++|+|++++ +|+.||.|++|++..
T Consensus 301 ~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 301 TPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp CCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred cceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence 234566788888888 888999999999753
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-35 Score=242.90 Aligned_cols=238 Identities=22% Similarity=0.372 Sum_probs=194.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Ce
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~ 80 (267)
+++|+|+|++|++++.||.|++||+... .....+.+|...|.++.|.+ .++++++.|+.|++||+.. ..
T Consensus 139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred EEEECCCCCEEEEECCCCeEEEEECcCC-------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc
Confidence 5789999999999999999999998653 24567789999999999954 4799999999999999984 33
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEee--
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGS-- 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-- 157 (267)
....+ .+|...|.++++++ +++++++++.|+.|++||++. ......+.+|...|.+++|+|++ .++++++
T Consensus 209 ~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 209 QIGTL-----QGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp EEEEE-----ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred eeeEE-----cCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence 33333 46889999999997 567899999999999999975 44566777899999999999976 4566654
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE--EeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
.|+.|++||+++++....+. + ...+.+++|+|+++.++++ +.||.|++||+...+...... ...|.+.|.
T Consensus 282 ~d~~i~i~d~~~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~--~~~h~~~v~ 353 (401)
T 4aez_A 282 MDKQIHFWNAATGARVNTVD--A----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVL 353 (401)
T ss_dssp TTCEEEEEETTTCCEEEEEE--C----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE--EECCSSCCC
T ss_pred CCCEEEEEECCCCCEEEEEe--C----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE--ecCCCCCEE
Confidence 79999999999887765542 1 2369999999999999994 489999999987754433221 146889999
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+++|+|++++|++++.||.|++|++..-.
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 99999999999999999999999986543
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.9e-35 Score=244.52 Aligned_cols=246 Identities=21% Similarity=0.324 Sum_probs=194.9
Q ss_pred eeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451 3 CAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 80 (267)
Q Consensus 3 ~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 80 (267)
|+++|+...+ ++++.||.|++|++...... ......+.+|.+.|++++|+|.++.+|++|+.|++|++||+.++.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV---DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEEC---CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCC---CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 6778877544 45789999999998653211 123456789999999999999545689999999999999998762
Q ss_pred ------eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe--eccccceeEEEEecCCCE
Q 024451 81 ------RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 81 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 152 (267)
....+ .+|...|.+++|++....++++++.|+.|++||++.. .....+ .+|...|.+++|+|++++
T Consensus 117 ~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 117 VLPLREPVITL-----EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp SSCBCSCSEEE-----ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred ccccCCceEEe-----cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccEEEecCCCCCceEEEEECCCCCE
Confidence 22222 4689999999999865578999999999999999754 456666 789999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE---EeCCeEEEEeCCccceeeecccccCC
Q 024451 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG---YSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g---~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
|++++.|+.|++||+++++.+..+...+. ...+.++.|+|++.++++| +.|+.|++||+...+...... ...
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~~~ 265 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHE---GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--ELD 265 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSC---SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--ECC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCC---CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE--ecc
Confidence 99999999999999999877655422221 2247889999999999999 689999999988765422211 124
Q ss_pred ccceEEEEEECCCCCeEEE-eECCCcEEEEecCc
Q 024451 230 HEGRITCLGLSADGSALCT-GSWDTNLKIWAFGG 262 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~s-gs~dg~i~~w~~~~ 262 (267)
|...+.+++|+|++++|++ |+.||.|++|++..
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 6678999999999999974 55799999999865
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=238.96 Aligned_cols=243 Identities=19% Similarity=0.282 Sum_probs=190.2
Q ss_pred ceeeCCCCC-eEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEe
Q 024451 2 TCAFSPTGQ-SVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWD 75 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd 75 (267)
+++|+|++. ++++++. |++|++||+.... .......+|...|.+++|+|+. +.+|++++.|+.|++||
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 678999995 4556666 9999999987532 1112234799999999999974 46899999999999999
Q ss_pred CCCCe-eEEEeCCccccCCccceEEEEEeC-----CCCeEEEEecCCCeEEEEeCCCcccceEEeecccc----ceeEEE
Q 024451 76 ITTGL-RTSVFGGEFQSGHTADVLSVSISG-----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG----DVNTVK 145 (267)
Q Consensus 76 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~i~~~~ 145 (267)
+.++. ....+ .+|...|.++.+.+ ++++++++++.|+.|++||++........+..|.+ .+.++.
T Consensus 97 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 97 LEAPEMPVYSV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp TTSCSSCSEEE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred CCCCCccEEEE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 98875 44443 46889999997753 45678999999999999999865545666665544 788888
Q ss_pred ----EecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc---CCCEEEEEEeCCeEEEEeCCccc
Q 024451 146 ----FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI---SGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 146 ----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
|+|+++++++++.|+.|++||+++++.... .. ....+.+++|+| ++.++++|+.||.|++||+...+
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeee--cC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 678999999999999999999998875432 11 224699999999 99999999999999999987655
Q ss_pred eeeeccc-ccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecC
Q 024451 219 VVLNLGS-LQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 219 ~~~~~~~-~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~ 261 (267)
....+.. ....|...|.+++|+|+++ +|++|+.||.|++|++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 4322210 1126889999999999998 89999999999999975
No 70
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=264.05 Aligned_cols=251 Identities=18% Similarity=0.269 Sum_probs=199.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+|++|++++.||+|++||+.... ......+.+|.+.|++++|+|+. +.+|++|+.||+|++||+.++.
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 57899999999999999999999986321 23556788999999999998762 4689999999999999999875
Q ss_pred eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEec----------
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFP---------- 148 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~---------- 148 (267)
..... ...+|...|.++.|+|.. +.++++++.||.|++||++... .....+.+|...|.++.|+|
T Consensus 89 ~~~~~---~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 89 WSQIA---VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp EEEEE---EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred ccccc---cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 22221 124688999999999752 6789999999999999997542 23445678999999999999
Q ss_pred ---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCccceeee
Q 024451 149 ---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 149 ---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
+++++++++.||.|++||++++.......... ..+...|.+++|+|+ +.++++|+.||.|++||....+....
T Consensus 166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp -CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred cCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence 58999999999999999998764322211111 233457999999999 89999999999999999876532111
Q ss_pred -cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 223 -LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 223 -~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.......|.+.|.+++|+|+|++|++|+.||.|++|++.
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 111124588899999999999999999999999999976
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.4e-35 Score=232.87 Aligned_cols=212 Identities=17% Similarity=0.250 Sum_probs=168.7
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCC
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDS 117 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~ 117 (267)
.+.+|...|++++|+|++ .+|++|+.|++|+|||+..+ .....+ .+|...|.+++|+++ .++++++++.|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l-----~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp ECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEE-----ccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 467899999999999976 58999999999999999753 223333 479999999999754 367899999999
Q ss_pred eEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEE
Q 024451 118 TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAF 193 (267)
Q Consensus 118 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~ 193 (267)
+|++||++... .....+.+|...|.+++|+|+ +++|++++.|++|++||++++... ..... .+...+.+++|
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~----~h~~~v~~~~~ 153 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID----AHAIGVNSASW 153 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE----CCSSCEEEEEE
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee----cccCccceEee
Confidence 99999987542 244566789999999999997 889999999999999999876322 11222 22346999999
Q ss_pred ccC-------------CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC---CeEEEeECCCcEEE
Q 024451 194 SIS-------------GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG---SALCTGSWDTNLKI 257 (267)
Q Consensus 194 s~~-------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~sgs~dg~i~~ 257 (267)
+|+ +++|++|+.|+.|++||....+...........|...|.+++|+|++ ++||+||.|++|+|
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 997 57999999999999999876542111111125799999999999985 89999999999999
Q ss_pred EecCc
Q 024451 258 WAFGG 262 (267)
Q Consensus 258 w~~~~ 262 (267)
|++..
T Consensus 234 Wd~~~ 238 (297)
T 2pm7_B 234 WTQDN 238 (297)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 99754
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-34 Score=269.82 Aligned_cols=242 Identities=25% Similarity=0.419 Sum_probs=205.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++|++++.||+|++||+... .....+.+|.+.|.+++|+|++ .++++++.|++|++||+.++..
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~-------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETG-------EKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCC-------CEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCce
Confidence 5789999999999999999999998653 2456778999999999999976 5899999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...+ .+|...+.++.|++. +..++++++.|+.|++||++.. .....+.+|.+.|.+++|+|+++++++++.|+
T Consensus 692 ~~~~-----~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 692 VHTY-----DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp EEEE-----ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred EEEE-----cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 7665 368889999999875 4557889999999999999754 45677889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeec--------------------------------------------------CCCCCCcEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQH--------------------------------------------------GENEIPHVTS 190 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~ 190 (267)
.|++||+++++....+.... ...+...+.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 99999998876543322100 0023346788
Q ss_pred EEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 191 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 191 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
++|+|++.++++|+.+|.|++||.........+ ..|.+.|.+++|+|+|++|++++.||.|++|++.
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999999999999999999887766544 4689999999999999999999999999999864
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-35 Score=242.62 Aligned_cols=255 Identities=17% Similarity=0.243 Sum_probs=197.4
Q ss_pred ceeeCCC----C---CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-----eeeEEEEEEe----cCCCee-EEE
Q 024451 2 TCAFSPT----G---QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYV----PDEDTH-LIT 64 (267)
Q Consensus 2 ~~~~~~~----g---~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~-l~s 64 (267)
+++|+|+ | ++|++++.|++|++|++...... .......+.+| ...|.++.|+ |++ .+ |++
T Consensus 67 ~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~ 143 (397)
T 1sq9_A 67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVA 143 (397)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEE
T ss_pred EEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEE
Confidence 5789998 9 99999999999999998753211 01114566778 6999999999 865 56 999
Q ss_pred eeCCCeEEEEeCCC------CeeEE-----EeCC--ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce
Q 024451 65 SSGDQTCVLWDITT------GLRTS-----VFGG--EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131 (267)
Q Consensus 65 ~~~d~~v~iwd~~~------~~~~~-----~~~~--~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~ 131 (267)
++.|+.|++||+.+ +.... .+.. .....|...+.++++++.. ++++++.|+.|++||++. ...+
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~ 220 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPL 220 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEE
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-Ccee
Confidence 99999999999987 43322 2210 0013477889999999754 889999999999999975 4466
Q ss_pred EEeec---c---ccceeEEEEecCCCEEEEeeCC---CcEEEEeCCCCeeeEEEEeecC--------CCCCCcEEEEEEc
Q 024451 132 RTFHG---H---EGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFS 194 (267)
Q Consensus 132 ~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s 194 (267)
..+.. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+..... ..+...|.+++|+
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC
Confidence 77777 8 8999999999999999999999 9999999998876655432100 0034579999999
Q ss_pred cCCCEEEEEEeCCeEEEEeCCccceeeecccc--cCCc---------------cceEEEEEECCCC----------CeEE
Q 024451 195 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--QNSH---------------EGRITCLGLSADG----------SALC 247 (267)
Q Consensus 195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--~~~~---------------~~~v~~~~~~p~~----------~~l~ 247 (267)
|++++|++++.||.|++||+...+.+..+... ...| ..+|.+++|+|++ ++|+
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 99999999999999999999887766554200 0034 8899999999998 7999
Q ss_pred EeECCCcEEEEecCc
Q 024451 248 TGSWDTNLKIWAFGG 262 (267)
Q Consensus 248 sgs~dg~i~~w~~~~ 262 (267)
+|+.||.|++|++.+
T Consensus 381 s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 381 CVCLDRSIRWFREAG 395 (397)
T ss_dssp EEETTTEEEEEEEEC
T ss_pred EecCCCcEEEEEcCC
Confidence 999999999999753
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.6e-35 Score=240.48 Aligned_cols=243 Identities=16% Similarity=0.214 Sum_probs=186.1
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ++++|++++.|++|++||+... .........+|...|.+++|+|++ .+|++++.|+.|++||+. +.
T Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 123 GMKFNQFNTNQLFVSSIRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp EEEEETTEEEEEEEEETTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SC
T ss_pred EEEeCCCCCCEEEEEeCCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CC
Confidence 578999 7899999999999999998641 111222234566889999999976 589999999999999995 44
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---ccceEEeeccccceeEEEEec-CCCEEEEe
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVKFFP-DGNRFGTG 156 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 156 (267)
....+ .+|...|.+++|++....++++++.|+.|++||++.. ......+ +|...|.+++|+| ++++|+++
T Consensus 196 ~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 196 EIFKE-----KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp EEEEE-----ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred EEEEe-----ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 44443 3688999999999765548999999999999998752 2233334 7999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCC--CCC----------CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGE--NEI----------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~----------~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 224 (267)
+.|+.|++||+++++....+..+... .+. ..+..++|+|++++ +|+.||.|++||+.+++.+..+.
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred cCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 99999999999987765544332110 011 23444566666666 66789999999998887765553
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
. ..|.+.+.+++|+|++++|++|+ ||.|++|++..
T Consensus 348 ~--~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 348 D--PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp B--TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred C--CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 1 12567788889999999999998 99999999753
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=227.29 Aligned_cols=233 Identities=22% Similarity=0.355 Sum_probs=191.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|+.+++|++..... ......+.+|...|.++.|.+ .++++++.|+.|++|| .+..
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSG----EDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTT----SCC-CEECCCSSCEEEEEEET---TEEEEEETTSEEEEEE--TTEE
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCC----CCcccchhhcccCEEEEEecC---CEEEEEeCCCCEEEEc--CCcE
Confidence 578999999999999999999999875322 124556789999999999943 4799999999999999 3444
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...+ ..|...+.++.+.+.+...+++++.|+.|++||.. .....+.. |...+.++.|+|++. +++++.|+
T Consensus 135 ~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 135 VYNL-----QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp EEEE-----ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred EEec-----ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence 4333 35888999999998677889999999999999943 34555555 889999999999988 99999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.|++||+++++.+..+.. +...+.+++|+|++ .+++++.||.|++||+...+....+ ..|..+|.+++|+
T Consensus 206 ~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~ 275 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEG-----HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCM 275 (313)
T ss_dssp EEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEEC
T ss_pred eEEEEECCchhhhhhhhc-----CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEc
Confidence 999999998877655432 23469999999999 5889999999999999888766554 4577899999999
Q ss_pred CCCCeEEEeECCCcEEEEecCce
Q 024451 241 ADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
|+++ +++++.||.|++|++..-
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCGG
T ss_pred cCCC-EEEEeCCCcEEEEeCCCC
Confidence 9998 556899999999998653
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-34 Score=234.72 Aligned_cols=244 Identities=9% Similarity=0.086 Sum_probs=190.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCe-eEEEeeCCCeEEEEeC-CCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSSGDQTCVLWDI-TTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d~~v~iwd~-~~~ 79 (267)
+++|+|++++|++++.|+.|++|++..... ......+.+|...|.+++|+|++ . +|++++.|+.|++||+ .++
T Consensus 16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCC
Confidence 678999999999999999999999875321 11234456899999999999974 6 7999999999999999 876
Q ss_pred eeEEEeCCccccC--CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--------ccceEEeeccccceeEEEEecC
Q 024451 80 LRTSVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--------SRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 80 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
.. ..+ .+ |...|.++++++ +.++++++.|+.|++||++.. ......+. |...+.+++|+|+
T Consensus 91 ~~-~~~-----~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 91 SF-QAL-----TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SE-EEC-----BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred ce-Eec-----cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 54 222 35 889999999997 668899999999999998630 22344444 7889999999988
Q ss_pred CCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCcc------ceee
Q 024451 150 GNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLA------KVVL 221 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~------~~~~ 221 (267)
+ +++++.|+.|++||+++ +........ ......+.+++|+| +++++++|+.||.+++|+.... +...
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 6 99999999999999987 543222111 12234689999999 9999999999999999998765 3332
Q ss_pred eccccc-----CCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 222 NLGSLQ-----NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 222 ~~~~~~-----~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.+.... ..|...|.+++|+|++++|++|+.||.|++|++....
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 221110 0234599999999999999999999999999986443
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=234.43 Aligned_cols=243 Identities=17% Similarity=0.295 Sum_probs=190.1
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeec----CCCCCC---CCCCcccccc------cCCeeeEEEEEEecCCCeeEEEeeC
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNL----NSPTDK---DGNLPVSRML------SGHKGYVSCCQYVPDEDTHLITSSG 67 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~----~~~~~~---~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~ 67 (267)
+++|+|+|+ +|++++.|+.|++|++ ...... .....+...+ .+|.+.|++++|+|++ .+|++++.
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~ 128 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVE 128 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEET
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeC
Confidence 688999999 9999999999999999 542200 0000111112 2378899999999975 58999999
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------------------
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------------------ 129 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------------------ 129 (267)
|+.|++|| .++.....+ .+|...+.+++|++ +++++++++.|+.|++||++....
T Consensus 129 dg~i~i~~-~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 129 NGELRLWN-KTGALLNVL-----NFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp TSCEEEEE-TTSCEEEEE-----CCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred CCeEEEEe-CCCCeeeec-----cCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 99999999 444444444 36888999999986 456788999999999999853211
Q ss_pred -------------------------------------ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee
Q 024451 130 -------------------------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172 (267)
Q Consensus 130 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 172 (267)
....+.+|...|.+++|+|+++++++++.|+.|++||+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 1123456788899999999999999999999999999998776
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
...+.. +...+.+++|+|++ .+++++.||.|++||+...+.+..+ ..|...|.+++|+|++++|++++.|
T Consensus 282 ~~~~~~-----~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 282 QNCFYG-----HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS----IVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SEEECC-----CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE----ECTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEecC-----CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec----ccCCccEEEEEEcCCCCEEEEEECC
Confidence 655422 23469999999999 9999999999999999887766544 3578899999999999999999999
Q ss_pred CcEEEEecCc
Q 024451 253 TNLKIWAFGG 262 (267)
Q Consensus 253 g~i~~w~~~~ 262 (267)
|.|++|++..
T Consensus 352 g~i~i~~~~~ 361 (425)
T 1r5m_A 352 GQVNVYDLKK 361 (425)
T ss_dssp SCEEEEECHH
T ss_pred CeEEEEECCC
Confidence 9999999754
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=248.43 Aligned_cols=252 Identities=13% Similarity=0.197 Sum_probs=188.3
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC---
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--- 77 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~--- 77 (267)
+++|+| ++++|++|+.|++|++||+....... ...... ..+|...|.+++|+|++ .+|++++.|++|++||++
T Consensus 68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~ 144 (437)
T 3gre_A 68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSL-TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQ 144 (437)
T ss_dssp EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSE-EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEE
T ss_pred EEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceee-eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEecccc
Confidence 678999 99999999999999999986411111 011111 22699999999999965 589999999999999994
Q ss_pred CCeeEEEeCCc------ccc-CCccceEEEEEe-CCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEe
Q 024451 78 TGLRTSVFGGE------FQS-GHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFF 147 (267)
Q Consensus 78 ~~~~~~~~~~~------~~~-~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~ 147 (267)
++......... +.. ++...+.++.+. .+++.++++++.|+.|++||++. .+.+..+.+ |...|.+++|+
T Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s 223 (437)
T 3gre_A 145 QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICID 223 (437)
T ss_dssp ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEEC
T ss_pred CCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEEC
Confidence 33322221110 000 145556666633 23567899999999999999975 445666776 88999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc----cCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS----ISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
|+++++++++.|+.|++||+++++.+..+... +...|.+++|+ +++.+|++|+.||.|++||+..++.+..+
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFG----DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp TTSCEEEEEETTSCEEEEETTTTEEEEEEBCT----TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEEcCCccEEEEEecC----CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 99999999999999999999987766544211 22368999665 46779999999999999999876654332
Q ss_pred ccc--------------------cC--CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 224 GSL--------------------QN--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 224 ~~~--------------------~~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
... .. .|...|.+++|+ ++++|++|+.||.|++|++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence 210 01 277889999999 779999999999999999754
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-34 Score=240.09 Aligned_cols=249 Identities=16% Similarity=0.233 Sum_probs=195.3
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ++++|++++.||+|++||+...............+.+|...|.+++|+|++..+|++++.|++|++||+.++.
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 578999 9999999999999999998764221111124566789999999999999875689999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-eccccc-eeEEEEecCCCEEEEe--
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGD-VNTVKFFPDGNRFGTG-- 156 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~-- 156 (267)
....+. ..+|...|.+++|++ +++++++++.|+.|++||++.. .....+ .+|.+. +.++.|+|++++++++
T Consensus 166 ~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 166 AVLTLG---PDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp EEEEEC---TTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred ccEEEe---cCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 766552 035888999999997 5678899999999999999854 345555 678765 8999999999999999
Q ss_pred -eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCccce-eeecccccCCccce
Q 024451 157 -SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGR 233 (267)
Q Consensus 157 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~ 233 (267)
+.|+.|++||+++.+........ .....+.+++|+|+++++++ |+.||.|++||+...+. +..+... .|..+
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~ 315 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKES 315 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSC
T ss_pred CCCCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCc
Confidence 79999999999886642222221 12235899999999999965 55799999999887663 2222211 26689
Q ss_pred EEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 234 ITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|.+++|+|++.++++ .|+.+++|++..
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred ccceEEeccccccee--cceeEEEEEcCC
Confidence 999999999999875 467999998743
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-33 Score=234.60 Aligned_cols=232 Identities=21% Similarity=0.355 Sum_probs=189.9
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
+++++..+++++.|+.|++||+.... ....+ ..|...|.+++|+|++ .+|++|+.|+.|++||+.++....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-------~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-------VSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLR 170 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-------EEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-------EeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEE
Confidence 33445678899999999999986532 22223 3489999999999965 589999999999999999887766
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
.+ .+|...+.++.+++ +++++++.|+.|++||++........+.+|.+.|.+++|+|++++|++++.|+.|+
T Consensus 171 ~~-----~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 171 TM-----AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp EE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Ee-----cCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 65 36888999999953 58899999999999999865666778889999999999999999999999999999
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE--eCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
+||+++++....+.. +...+.+++|+|++. ++++|+ .||.|++||+...+....+ .+...|.+++|+
T Consensus 243 iwd~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----~~~~~v~~~~~s 312 (401)
T 4aez_A 243 IWDARSSIPKFTKTN-----HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----DAGSQVTSLIWS 312 (401)
T ss_dssp EEETTCSSEEEEECC-----CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----ECSSCEEEEEEC
T ss_pred EccCCCCCccEEecC-----CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----eCCCcEEEEEEC
Confidence 999998776554322 234689999999765 555554 6999999999887766544 356789999999
Q ss_pred CCCCeEEE--eECCCcEEEEecCc
Q 024451 241 ADGSALCT--GSWDTNLKIWAFGG 262 (267)
Q Consensus 241 p~~~~l~s--gs~dg~i~~w~~~~ 262 (267)
|++++|++ |+.||.|++|++..
T Consensus 313 ~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 313 PHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp SSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCCCeEEEEeecCCCcEEEEecCC
Confidence 99999999 44899999999755
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-35 Score=240.10 Aligned_cols=246 Identities=15% Similarity=0.204 Sum_probs=177.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.|++|++||+.... .......+.+|...|.+++|+|++ .+|++++.|+.|++||++++..
T Consensus 60 ~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 60 CVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp EEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccc
Confidence 57899999999999999999999987532 122345677899999999999965 5899999999999999987652
Q ss_pred ---EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc-----------------ccceEEeeccccce
Q 024451 82 ---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDV 141 (267)
Q Consensus 82 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~i 141 (267)
...+. ..|...|.+++|++ +++++++++.|+.|++||++.. ......+ +|...|
T Consensus 135 ~~~~~~~~----~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 208 (377)
T 3dwl_C 135 WWVSKHLK----RPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV 208 (377)
T ss_dssp CCCCEEEC----SSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred ceeeeEee----cccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence 22321 23889999999997 5678999999999999998421 2234445 899999
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc---
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--- 218 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--- 218 (267)
.+++|+|++++|++++.|+.|++||+++++....... ....+...+.+++|+|++++|++|+.++.+ +|+.....
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~ 286 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI-TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAH 286 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC-CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE-eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEE
Confidence 9999999999999999999999999998876211111 011233569999999999999999766655 66653111
Q ss_pred --eee-------------------------------------------ecccccCCccceEEEEEECCCC-C---eEEEe
Q 024451 219 --VVL-------------------------------------------NLGSLQNSHEGRITCLGLSADG-S---ALCTG 249 (267)
Q Consensus 219 --~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~p~~-~---~l~sg 249 (267)
.+. ........|...|+++++.+.. . .|+||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~ 366 (377)
T 3dwl_C 287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS 366 (377)
T ss_dssp SBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEee
Confidence 000 0001122389999999976543 3 69999
Q ss_pred ECCCcEEEEec
Q 024451 250 SWDTNLKIWAF 260 (267)
Q Consensus 250 s~dg~i~~w~~ 260 (267)
|.||.|++|++
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 99999999985
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=224.59 Aligned_cols=230 Identities=19% Similarity=0.289 Sum_probs=189.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 80 (267)
+++| |++++|++++.||.|++||+... .....+..|...|.+++|+|++ .++++++.|+.|++|++....
T Consensus 23 ~~~~-~~~~~l~s~~~dg~v~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 23 DVVA-VDDSKVASVSRDGTVRLWSKDDQ-------WLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp EEEE-EETTEEEEEETTSEEEEEEESSS-------EEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTT
T ss_pred EEEe-cCCCEEEEEEcCCcEEEEECCCC-------EEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCC
Confidence 5678 99999999999999999998542 2455677899999999999975 589999999999999987542
Q ss_pred --eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEee
Q 024451 81 --RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS 157 (267)
Q Consensus 81 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 157 (267)
....+ .+|...+.++.+. +.++++++.|+.|++||. ......+..|...+.++.|.| +++++++++
T Consensus 94 ~~~~~~~-----~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 162 (313)
T 3odt_A 94 EDPLYTL-----IGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162 (313)
T ss_dssp SCC-CEE-----CCCSSCEEEEEEE---TTEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred CCcccch-----hhcccCEEEEEec---CCEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence 22222 4688899999994 357899999999999993 345677788999999999998 899999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
.|+.|++||.. +....+. ..+...+.+++|+|++. +++++.||.|++||+...+.+..+ ..|.+.|.++
T Consensus 163 ~d~~i~i~d~~--~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~i~~~ 231 (313)
T 3odt_A 163 ADKTIKLWQND--KVIKTFS----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY----EGHESFVYCI 231 (313)
T ss_dssp TTSCEEEEETT--EEEEEEC----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE----ECCSSCEEEE
T ss_pred CCCCEEEEecC--ceEEEEe----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh----hcCCceEEEE
Confidence 99999999943 3333322 11345799999999998 999999999999999887766554 4688999999
Q ss_pred EECCCCCeEEEeECCCcEEEEecCce
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|+|++ .|++++.||.|++|++...
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 6889999999999997543
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=231.01 Aligned_cols=241 Identities=20% Similarity=0.293 Sum_probs=184.6
Q ss_pred ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+++|+|+ |++|++++.||.|++||+.... ......+.+|...|.++.|+|++ .+|++++.|+.|++||+.+
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC
Confidence 6889999 6999999999999999987521 12346778999999999999965 5899999999999999998
Q ss_pred CeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--------------------
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-------------------- 137 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------- 137 (267)
+..... .+|...+.++.|. .++++++++++.|+.|++||++... ....+..|
T Consensus 118 ~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 3mmy_A 118 NQAIQI------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPERCYCADVIYPMAVVATAER 190 (368)
T ss_dssp TEEEEE------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSSCEEEEEEETTEEEEEEGGG
T ss_pred CCceee------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCCCceEEEecCCeeEEEeCCC
Confidence 876543 3588899999993 2456789999999999999987533 23333222
Q ss_pred ---------------------ccceeEEEEecCCCE----EEEeeCCCcEEEEeCCCCe---eeEEEEeecCC-------
Q 024451 138 ---------------------EGDVNTVKFFPDGNR----FGTGSDDGTCRLFDIRTGH---QLQVYYQQHGE------- 182 (267)
Q Consensus 138 ---------------------~~~i~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~------- 182 (267)
...+.++.+.++... +++++.|+.|++||++... ....+..+...
T Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 123445555554443 9999999999999998763 22222211100
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+...|.+++|+|++++|++|+.||.|++||+...+.+..+ ..|..+|.+++|+|+|++|++|+.|+..+.|.
T Consensus 271 ~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 01115999999999999999999999999999887776554 46889999999999999999999988655554
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.6e-34 Score=240.02 Aligned_cols=212 Identities=15% Similarity=0.205 Sum_probs=169.5
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
.+...+|...|+|++|+|.+..+||+|+.||+|+|||+.++.....+. ..+|...|.+++|+|.++.+|++++.|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 344567888999999999877789999999999999998775444332 24799999999999877789999999999
Q ss_pred EEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451 119 ARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 195 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 195 (267)
|++||++.. ....+. .+...+.+++|+|++++|++|+.|+.|++||++.. .+..+ ..+...|.+++|+|
T Consensus 189 v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~-----~~h~~~v~~v~~~p 260 (435)
T 4e54_B 189 TRLQDFKGN--ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL-----RMHKKKVTHVALNP 260 (435)
T ss_dssp EEEEETTSC--EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS-----BCCSSCEEEEEECT
T ss_pred EEEeeccCC--ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE-----ecccceEEeeeecC
Confidence 999998742 222222 23445789999999999999999999999999753 32221 23345799999999
Q ss_pred CCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 196 SGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 196 ~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
++. ++++|+.|+.|++||++..+....+. ....|...|.+++|+|+|++|++|+.||.|+||++..
T Consensus 261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 261 CCDWFLATASVDQTVKIWDLRQVRGKASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp TCSSEEEEEETTSBCCEEETTTCCSSSCCS-BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred CCceEEEEecCcceeeEEecccccccceEE-EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence 876 77889999999999987765443322 1246889999999999999999999999999999754
No 85
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-34 Score=231.72 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=174.8
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 84 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 84 (267)
+.+++.+|++|+.||+|++||+.... ....+. ...|.++.|+|. +++++.|++|++|+.........
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~-------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSK-------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSS-------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCc-------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEee
Confidence 45688999999999999999986532 222222 466777788875 89999999999998764221111
Q ss_pred eC-----CccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEe-eccccceeEEEEecCCCEEEEee
Q 024451 85 FG-----GEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 85 ~~-----~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
+. .....+|...|.+++++|. +++++++++.|+.|++||++... ..... ..|...+.+++|+|+++++++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 00 0112356678999999861 45688999999999999998544 34333 34556799999999999999999
Q ss_pred CCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE--
Q 024451 158 DDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-- 234 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-- 234 (267)
.|+.|++||+++++.. ..+.. .+...|.+++|+|++.+|++++ ++.|++||++..+.+..+..+ ..|...+
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 263 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY-TIPEFKTGT 263 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC-BC-----CC
T ss_pred CCCEEEEEECCCCCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc-ccccccccc
Confidence 9999999999988765 33321 1345799999999999999999 559999999887655433221 1133333
Q ss_pred EEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451 235 TCLGLSADGSALCTGSW-DTNLKIWAFG 261 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~-dg~i~~w~~~ 261 (267)
.+++|+|+|++|++++. |+.+++|++.
T Consensus 264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 264 VTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 46999999999999998 9999999874
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.3e-34 Score=230.98 Aligned_cols=213 Identities=19% Similarity=0.273 Sum_probs=163.8
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCe
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDST 118 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~ 118 (267)
..+.+|.+.|++++|+|++ .+|++|+.|++|++||+.++...... ...+|...|.+++|+++ +++++++++.|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~---~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIA---DLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEE---EEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEE---EEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 3467999999999999975 58999999999999999876432211 12479999999999754 4678999999999
Q ss_pred EEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451 119 ARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 195 (267)
Q Consensus 119 i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 195 (267)
|++||++... .....+.+|...|.+++|+|+ +.+|++++.|++|++||++.+...... .....+...+.+++|+|
T Consensus 83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~--~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK--KINNAHTIGCNAVSWAP 160 (316)
T ss_dssp EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC--CBTTSSSSCBCCCEECC
T ss_pred EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee--eeeccccCCcceEEEcc
Confidence 9999987532 245567789999999999997 789999999999999999875322111 11223445688899998
Q ss_pred C-----------------CCEEEEEEeCCeEEEEeCCccc---eeeecccccCCccceEEEEEECCCC----CeEEEeEC
Q 024451 196 S-----------------GRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSHEGRITCLGLSADG----SALCTGSW 251 (267)
Q Consensus 196 ~-----------------~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~ 251 (267)
+ +.+|++|+.|+.|++||..... ....+ ..|...|.+++|+|++ ++||+|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l----~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL----EAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC----BCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec----ccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 7 4689999999999999986432 22222 4699999999999986 89999999
Q ss_pred CCcEEEEecCc
Q 024451 252 DTNLKIWAFGG 262 (267)
Q Consensus 252 dg~i~~w~~~~ 262 (267)
||+|++|++..
T Consensus 237 D~~v~iw~~~~ 247 (316)
T 3bg1_A 237 DGRVFIWTCDD 247 (316)
T ss_dssp TCEEEEEECSS
T ss_pred CCeEEEEEccC
Confidence 99999998754
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-32 Score=232.78 Aligned_cols=236 Identities=20% Similarity=0.349 Sum_probs=190.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|++ .|++++.||+|++||+... .....+.+|...|.+++|.+. +..++++++.|++|++||+.++.
T Consensus 167 ~l~~~~~~-~l~s~s~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~ 238 (464)
T 3v7d_B 167 ALKYAHGG-ILVSGSTDRTVRVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238 (464)
T ss_dssp EEEECSTT-EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred EEEEcCCC-EEEEEeCCCCEEEEECCCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence 57889888 8999999999999998652 255678899999999999863 44789999999999999998764
Q ss_pred eEEEeC------------------CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccccee
Q 024451 81 RTSVFG------------------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN 142 (267)
Q Consensus 81 ~~~~~~------------------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 142 (267)
...... .....+|...+.++... +.++++++.|+.|++||++. .+....+.+|...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIY 314 (464)
T ss_dssp CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEE
T ss_pred ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEE
Confidence 321110 01224677888887543 46889999999999999975 456777889999999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451 143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
++.|+|+++++++++.|+.|++||+++++.+..+.. +...+.+++|+ +.++++|+.||.|++||+...+....
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-----HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 999999999999999999999999999887665432 33468999987 58999999999999999987665433
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
. .|...+..++|+|++++|++|+ ||.|++|++..
T Consensus 388 ~-----~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 388 Y-----HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp E-----ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred e-----cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 2 3556677889999999999998 99999999754
No 88
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-33 Score=226.08 Aligned_cols=238 Identities=25% Similarity=0.375 Sum_probs=177.4
Q ss_pred EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCC
Q 024451 14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH 93 (267)
Q Consensus 14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 93 (267)
+|-..|+-.+|.... ...++.+..+++||++.|++++|+|++..+|+|||.|++|++||+.+.............+|
T Consensus 9 ~g~d~g~~~~~~~~~---~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h 85 (340)
T 4aow_A 9 SGVDLGTENLYFQSM---MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85 (340)
T ss_dssp --------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC
T ss_pred cccCCCCccEEEEEc---cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC
Confidence 333445555543322 12224466689999999999999998767999999999999999976532211111223579
Q ss_pred ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451 94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173 (267)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 173 (267)
...|.+++|++ +++++++++.|+.|++|+.... ........+...+....++++++++++++.|+.+++||+......
T Consensus 86 ~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 86 SHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred CCCEEEEEECC-CCCEEEEEcccccceEEeeccc-ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 99999999996 5678999999999999998743 345555667788899999999999999999999999999765543
Q ss_pred EEEEeecCCCCCCcEEEEEEccCC--CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 174 QVYYQQHGENEIPHVTSIAFSISG--RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
... ...+...+..++|++++ .++++++.|+.|++||....+....+ ..|.++|.+++|+|++++|++|+.
T Consensus 164 ~~~----~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 164 TVQ----DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp EEC----SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE----CCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEE----eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe----cCCCCcEEEEEECCCCCEEEEEeC
Confidence 221 22334578899998764 57889999999999999887766554 468899999999999999999999
Q ss_pred CCcEEEEecCceE
Q 024451 252 DTNLKIWAFGGYR 264 (267)
Q Consensus 252 dg~i~~w~~~~~~ 264 (267)
||.|++|++...+
T Consensus 236 Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 236 DGQAMLWDLNEGK 248 (340)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCeEEEEEeccCc
Confidence 9999999986544
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-32 Score=230.46 Aligned_cols=225 Identities=27% Similarity=0.504 Sum_probs=188.5
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
++++++++|++|+.||+|++||.... .....+.+|...|.++.| + +.++++|+.||+|++||+.++....
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCC-------eEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEE
Confidence 56679999999999999999998642 255678899999999998 3 3589999999999999999987766
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.+ .+|...+.++.+++ ..+++++.|+.|++||++..... ...+.+|...|.++.| +++++++++.|+.
T Consensus 208 ~~-----~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 208 TL-----IHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp EE-----CCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred EE-----cCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 65 36888999999863 47899999999999998754322 2567789999999998 6789999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||+++++.+..+.. +...+.++.| ++.++++|+.||.|++||..+++.+..+ ..|...|.+++|
T Consensus 278 i~vwd~~~~~~~~~~~~-----~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~~~~-- 344 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNG-----HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRF-- 344 (435)
T ss_dssp EEEEETTTCCEEEEEEC-----CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEC--
T ss_pred EEEEECCcCcEEEEEcC-----CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE----eCCcCcEEEEEe--
Confidence 99999999877665432 2346888888 4689999999999999999888776554 468899999998
Q ss_pred CCCeEEEeECCCcEEEEecC
Q 024451 242 DGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~ 261 (267)
++++|++|+.||.|++|++.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHH
T ss_pred cCCEEEEEeCCCcEEEEECC
Confidence 78999999999999999974
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.5e-34 Score=234.16 Aligned_cols=249 Identities=14% Similarity=0.209 Sum_probs=190.1
Q ss_pred ceeeCCC----CCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCC---CeeEEEeeCCCeEE
Q 024451 2 TCAFSPT----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDE---DTHLITSSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~----g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~---~~~l~s~~~d~~v~ 72 (267)
+++|+|+ ...+++++.++.|++||+..... ..... ....|...|++++|+|+. +.+|++|+.|+.|+
T Consensus 23 ~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 23 GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE----IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC----EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred EEEEecccCCCCceEEEECCCCEEEEEEcCCCcE----EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 5789984 45677777777999999874221 11111 112366889999999973 35899999999999
Q ss_pred EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---eccccceeEEEEecC
Q 024451 73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---HGHEGDVNTVKFFPD 149 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~ 149 (267)
+||+.++.....+ .+|...|.+++|++.+++++++++.|+.|++||++.. .....+ .+|...|.+++|+|+
T Consensus 99 v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 99 IINPITMQCIKHY-----VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp EECTTTCCEEEEE-----ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECTT
T ss_pred EEEchhceEeeee-----cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECCC
Confidence 9999988766655 3688999999999756788999999999999999754 345555 679999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEe-----------------------ecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-----------------------QHGENEIPHVTSIAFSISGRLLFAGYSN 206 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~s~~~~~l~~g~~d 206 (267)
++++++++.|+.|++||+++++....+.. .....+...|.+++|+ ++++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 99999999999999999987643211100 0001134568999998 7799999999
Q ss_pred CeEEEEeCCccceeee----------cccccCCccceEEEEEECCC--CCeEEEeECCCcEEEEecCc
Q 024451 207 GDCYVWDTLLAKVVLN----------LGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 207 g~i~i~d~~~~~~~~~----------~~~~~~~~~~~v~~~~~~p~--~~~l~sgs~dg~i~~w~~~~ 262 (267)
|.|++||+...+.... .......|...|.+++|+|+ +++|++|+.||.|++|++..
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 9999999866543100 00111357788999999999 99999999999999999865
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-32 Score=239.27 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=197.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeee-EEEEEEec--CCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVP--DEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+++|+|+|++|++++ ++.+++|++..... .......+.+|... |++++|+| ++ .+|++++.|++|++||+.+
T Consensus 23 ~~~~spdg~~l~~~~-~~~v~v~~~~~~~~---~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 23 HLSYDPTTNAIAYPC-GKSAFVRCLDDGDS---KVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp CCEEETTTTEEEEEE-TTEEEEEECCSSCC---SSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCEEEEec-CCeEEEEECCCCCC---ccccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCC
Confidence 678999999999998 88999999874311 11255678899999 99999999 76 5899999999999999975
Q ss_pred C--------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451 79 G--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKF 146 (267)
Q Consensus 79 ~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 146 (267)
+ .....+ ..|...+.+++|++. ++++++++.+ +.|++||.. .....+.+|...|.+++|
T Consensus 98 ~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~~~ 168 (615)
T 1pgu_A 98 DKESNSVEVNVKSEF-----QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHL 168 (615)
T ss_dssp EGGGTEEEEEEEEEE-----ECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEE
T ss_pred Ccccccccccccchh-----hcccccEEEEEEeCC-CCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEEEE
Confidence 4 222222 357889999999974 5677888877 789999842 456778899999999999
Q ss_pred ecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC---cEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceee
Q 024451 147 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP---HVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 147 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
+|+++ .+++++.|+.|++||+++++....+.. +.. .+.+++|+|+ ++++++++.||.|++||+..++.+.
T Consensus 169 ~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 169 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp CSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 99997 899999999999999998776655432 223 6999999999 9999999999999999998877665
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+......|.+.|.+++|+ ++++|++++.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence 5421111688999999999 999999999999999999864
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=237.25 Aligned_cols=247 Identities=14% Similarity=0.210 Sum_probs=187.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc----------C--CeeeEEEEEE--ecCCCeeEEEeeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS----------G--HKGYVSCCQY--VPDEDTHLITSSG 67 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~----------~--h~~~v~~~~~--~~~~~~~l~s~~~ 67 (267)
+++|+|++++|++++.|++|++||+..... + ....... . +...+.++.+ +|+ +.++++++.
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 190 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQ--E--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTN 190 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEEE--T--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEET
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEeccccC--C--ceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeC
Confidence 678999999999999999999999852100 0 0111111 1 5556666664 343 468999999
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEE
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKF 146 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~ 146 (267)
|+.|++||++++.....+.. ..|...|.++++++. ++++++++.||.|++||++. ...+..+. .|...|.++.|
T Consensus 191 d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIEN---SPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp TSEEEEEETTTCCEEEEEEC---CGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEE
T ss_pred CCeEEEEeCCCCeeeEEEcc---CCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEe
Confidence 99999999999877666532 127889999999864 67899999999999999985 44555554 67788999966
Q ss_pred e----cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC---------------------CCCCCcEEEEEEccCCCEEE
Q 024451 147 F----PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------------------ENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 147 ~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~s~~~~~l~ 201 (267)
+ |++.++++++.|+.|++||+++++....+..... ..+...|.+++|+ ++++|+
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 5 4577999999999999999999887766543210 0133458899999 789999
Q ss_pred EEEeCCeEEEEeCCccceeeeccc---------------------------------ccCCccceEEEEEECCC--CCeE
Q 024451 202 AGYSNGDCYVWDTLLAKVVLNLGS---------------------------------LQNSHEGRITCLGLSAD--GSAL 246 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~~~~~~~---------------------------------~~~~~~~~v~~~~~~p~--~~~l 246 (267)
+|+.||.|++||+..++....+.. ....|...|.+++|+++ +.+|
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 999999999999987665433321 01138899999999988 7899
Q ss_pred EEeECCCcEEEEe
Q 024451 247 CTGSWDTNLKIWA 259 (267)
Q Consensus 247 ~sgs~dg~i~~w~ 259 (267)
++|+.||.|+||.
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999994
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-33 Score=229.85 Aligned_cols=257 Identities=11% Similarity=0.089 Sum_probs=177.4
Q ss_pred CceeeCCCCCeEEEccC-------CCeEEEeecCCCCCCCC-CC--cccccccCCeeeEEEEEEecC--------CCeeE
Q 024451 1 MTCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDG-NL--PVSRMLSGHKGYVSCCQYVPD--------EDTHL 62 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~-------d~~v~~w~~~~~~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~--------~~~~l 62 (267)
++++|+|+|++|++||. ++.|++|++........ .. .....+.+|...|.++++.++ +...|
T Consensus 18 ~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l 97 (365)
T 4h5i_A 18 YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKI 97 (365)
T ss_dssp EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHH
T ss_pred EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEE
Confidence 47899999999999875 44699999875331100 00 011246788888998887652 11123
Q ss_pred EEeeCCCeEEEEeCCCCeeEE----EeCCccccCCccceEEEEEeCCCCeEEE--EecCCCeEEEEeCCCcccceEEeec
Q 024451 63 ITSSGDQTCVLWDITTGLRTS----VFGGEFQSGHTADVLSVSISGSNSRMFV--SGSCDSTARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 63 ~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~--s~~~d~~i~iwd~~~~~~~~~~~~~ 136 (267)
++++.|+++|+|++.+..... .........++..+..++|+|.+ ++++ +++.|++|++||++.. .....+ .
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~-~~~~~~-~ 174 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDL-TEKFEI-E 174 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTT-EEEEEE-E
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCC-cEEEEe-C
Confidence 345568899999986542111 11111123355568889999754 4443 5668999999999753 344555 4
Q ss_pred cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEE
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVW 212 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~ 212 (267)
|...|.+++|+|+|+++++++.| .+++|+..+++...... ...+...+.+++|+|++..+++++.++ .+++|
T Consensus 175 ~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 175 TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 77889999999999999998855 56667666665543221 122345689999999999999999887 68888
Q ss_pred eCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
|................|...|++++|+|+|++||+|+.|++|+||++...+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 8755433211111124688899999999999999999999999999986544
No 94
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.9e-32 Score=221.92 Aligned_cols=242 Identities=14% Similarity=0.149 Sum_probs=173.4
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.+++|+|+|++|++|+.|+ +++|++.... .....+...+..+.+.++....+++++.|++|++||..++.
T Consensus 23 ~~v~fs~dg~~la~g~~~~-~~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVA---------HIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp CEEEECTTSSEEEEECSSE-EEEEEETTEE---------EEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEcCCE-EEEEecCCcc---------eeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 3689999999999998775 7899976411 11111222467778887765555778889999999999887
Q ss_pred eEEEeCCccccCCccceEEEEEeCC----------------CC------------------eEEEE--ecCCCeEEEEeC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGS----------------NS------------------RMFVS--GSCDSTARLWDT 124 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~------------------~~~~s--~~~d~~i~iwd~ 124 (267)
....+. +...+.++.+++. .. ..++. ++.||.|++||+
T Consensus 93 ~~~~~~------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 93 DVSRIK------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEEEEE------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEEC
T ss_pred EEEEEE------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEEC
Confidence 655442 2233444444321 00 22333 688999999998
Q ss_pred CCcc--------------cc-eEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451 125 RVAS--------------RA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHV 188 (267)
Q Consensus 125 ~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v 188 (267)
+... .+ ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++++.+..+... .+...|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---~h~~~v 243 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---LDRADV 243 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---TCCSCE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---CCCCcE
Confidence 7432 11 5678899999999999999999999999998 999999998877665421 123579
Q ss_pred EEEEEccCCCEEEEEEeCCeEEEEeCCccceee--eccc-----------------ccCCccceEEEEEECCCCCeEEEe
Q 024451 189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--NLGS-----------------LQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~-----------------~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
.+++|+|++++|++++.|+.|++||+....... .+.. +...+..+...++|+|++++|+++
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 999999999999999999999999986542110 0000 111122234668999999999999
Q ss_pred ECCCcEEEEecC
Q 024451 250 SWDTNLKIWAFG 261 (267)
Q Consensus 250 s~dg~i~~w~~~ 261 (267)
+.||.+++|++.
T Consensus 324 ~~dg~~~~~~~~ 335 (355)
T 3vu4_A 324 PHTRMIETFKVV 335 (355)
T ss_dssp TTTTEEEEEEEE
T ss_pred eCCCeEEEEEEE
Confidence 999999999864
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.2e-32 Score=228.55 Aligned_cols=227 Identities=26% Similarity=0.430 Sum_probs=182.9
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
..++++|++|+.||+|++||+... .....+.+|...|.++.|++ ..+++|+.|++|++||+.++......
T Consensus 180 ~~~~~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 180 QYDERVIITGSSDSTVRVWDVNTG-------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp ECCSSEEEEEETTSCEEEEESSSC-------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred EECCCEEEEEcCCCeEEEEECCCC-------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 348899999999999999998753 24567789999999999975 37999999999999999876543211
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 165 (267)
....+|...+.++.+. ++++++++.|+.|++||++. ......+.+|...|.++.++ ++++++++.|+.|++|
T Consensus 250 --~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 250 --RVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW 321 (435)
T ss_dssp --EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred --eEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEE
Confidence 1124688899999984 45889999999999999975 44677888999999999984 6799999999999999
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc---------eeeecccccCCccceEEE
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---------VVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~~~v~~ 236 (267)
|+++++.+..+.. +...+.+++| ++.++++|+.||.|++||+...+ .+..+ ..|.+.|.+
T Consensus 322 d~~~~~~~~~~~~-----h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~h~~~v~~ 390 (435)
T 1p22_A 322 DIECGACLRVLEG-----HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----VEHSGRVFR 390 (435)
T ss_dssp ETTTCCEEEEECC-----CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE----CCCSSCCCC
T ss_pred ECCCCCEEEEEeC-----CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec----cCCCCCeEE
Confidence 9999877655432 3346889888 78899999999999999986554 22222 468899999
Q ss_pred EEECCCCCeEEEeECCCcEEEEecCce
Q 024451 237 LGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
++| ++++|++|+.||.|++|++...
T Consensus 391 l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 391 LQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEE--CSSCEEECCSSSEEEEEC----
T ss_pred EEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999 6889999999999999998654
No 96
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-31 Score=222.85 Aligned_cols=226 Identities=26% Similarity=0.439 Sum_probs=190.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
.+++++|++|++|+.||+|++||+... .....+.+|...|.++.|++ .++++|+.|++|++||+.++...
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~ 192 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECI 192 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEE
Confidence 357788999999999999999998642 25667889999999999974 47999999999999999998776
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
..+ .+|...|.++.+++ ..+++++.|+.|++||++. .+....+.+|...|.++.+ +++++++++.|+.|
T Consensus 193 ~~~-----~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 193 HTL-----YGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV 261 (445)
T ss_dssp EEE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS-CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred EEE-----CCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC-CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEE
Confidence 665 36888999999863 4689999999999999975 4467778899999999998 67899999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
++||+++++.+..+. .+...+.+++| ++.++++|+.||.|++||+.+++.+..+ ..|...+.++.+ +
T Consensus 262 ~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~v~~~~~--~ 328 (445)
T 2ovr_B 262 KVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----TGHQSLTSGMEL--K 328 (445)
T ss_dssp EEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE----CCCCSCEEEEEE--E
T ss_pred EEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE----cCCcccEEEEEE--e
Confidence 999999887665542 23346889988 7889999999999999999888776554 467888888876 4
Q ss_pred CCeEEEeECCCcEEEEecCc
Q 024451 243 GSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 243 ~~~l~sgs~dg~i~~w~~~~ 262 (267)
+++|++|+.||.|++|++..
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp TTEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCC
Confidence 67999999999999999754
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=224.25 Aligned_cols=216 Identities=18% Similarity=0.242 Sum_probs=173.4
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCC-CCeEEEEec
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGS 114 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~ 114 (267)
+...+.+|+..|++++|+|++ .+|++|+.|+.|++||+... .....+ .+|...|.+++|+++ +++++++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp --CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEe-----cCCCCcEEEEEeCCCCCCCEEEEec
Confidence 345678999999999999975 58999999999999999743 333333 468999999999754 267899999
Q ss_pred CCCeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEE
Q 024451 115 CDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 191 (267)
Q Consensus 115 ~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 191 (267)
.|+.|++||++... .....+..|...|.+++|+|+ ++++++++.|+.|++||+++......... ..+...+.++
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~v~~~ 153 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHAIGVNSA 153 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE---ECCTTCEEEE
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe---cCCCCceEEE
Confidence 99999999987543 145667789999999999999 99999999999999999988743322211 1233469999
Q ss_pred EEcc-------------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC---CCeEEEeECCCcE
Q 024451 192 AFSI-------------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD---GSALCTGSWDTNL 255 (267)
Q Consensus 192 ~~s~-------------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~sgs~dg~i 255 (267)
+|+| ++.++++|+.||.|++||+...+...........|...|.+++|+|+ +++|++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 9999 69999999999999999987654332222222568999999999999 8999999999999
Q ss_pred EEEecCc
Q 024451 256 KIWAFGG 262 (267)
Q Consensus 256 ~~w~~~~ 262 (267)
++|++..
T Consensus 234 ~iwd~~~ 240 (379)
T 3jrp_A 234 IIWTQDN 240 (379)
T ss_dssp EEEEESS
T ss_pred EEEeCCC
Confidence 9999865
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=225.95 Aligned_cols=209 Identities=12% Similarity=0.099 Sum_probs=167.2
Q ss_pred cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC--CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 43 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 43 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
.+|.+.|.+++|+|++..++++++.|++|++||+. ++.....+.. ..|...+.+++|++ +++++++++.++.++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSKRPNAISIAE-DDTTVIIADKFGDVY 174 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCCCceEEEEcC-CCCEEEEEeCCCcEE
Confidence 35777899999999875445899999999999998 6655554421 24667899999997 457889999999999
Q ss_pred EEeCCCccc---ceEEeeccccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 121 LWDTRVASR---AVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 121 iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
+|++..... ....+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.. .+...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~h~~~v~~~~~s 250 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF----GHKHFVSSICCG 250 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC----CCSSCEEEEEEC
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec----CCCCceEEEEEC
Confidence 999864332 22366789999999999999 99999999999999999998876654332 234579999999
Q ss_pred cCCCEEEEEEeCCeEEEEeCCccceeeeccccc---------------------CCccceEEEEEECCCCCeEEEeE-CC
Q 024451 195 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ---------------------NSHEGRITCLGLSADGSALCTGS-WD 252 (267)
Q Consensus 195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~~p~~~~l~sgs-~d 252 (267)
++.+|++|+.|+.|++||+..++.+..+.... ..+...|.+++|+|++++|++++ .|
T Consensus 251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 329 (450)
T 2vdu_B 251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329 (450)
T ss_dssp -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence 99999999999999999998877554432100 02345789999999999999999 89
Q ss_pred CcEEEEec
Q 024451 253 TNLKIWAF 260 (267)
Q Consensus 253 g~i~~w~~ 260 (267)
+.|++|++
T Consensus 330 ~~i~iw~~ 337 (450)
T 2vdu_B 330 KCIIILEM 337 (450)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEe
Confidence 99999998
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.5e-31 Score=222.89 Aligned_cols=240 Identities=20% Similarity=0.324 Sum_probs=188.9
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
++|+++ ++|++| .|++|++||..... ......+.+|...|++++|+|++ .+|++|+.|++|++||++++...
T Consensus 111 l~wS~~-n~lAvg-ld~tV~lWd~~tg~-----~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 111 VDWSSG-NVLAVA-LDNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp EEECTT-SEEEEE-ETTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE
T ss_pred EEECCC-CEEEEE-eCCEEEEEECCCCC-----EEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEE
Confidence 678875 566665 59999999986522 22223456888999999999975 58999999999999999998877
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
..+ .+|...+.++.+++ .++++++.|+.+++||.+........+.+|...+..+.++|+++++++++.|+.+
T Consensus 183 ~~~-----~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 183 RNM-----TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp EEE-----CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEE-----eCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence 665 46888999988863 5889999999999999887666777888999999999999999999999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEE--EEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
++||..+++........ ...+...|.+++|+|.+. .+++ |+.|+.|++||+.+++....+ .+...+.++.|
T Consensus 255 ~i~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~-----~~~~~v~~~~~ 328 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-----DAHSQVCSILW 328 (420)
T ss_dssp EEEESSCCSSCSCCSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE-----ECSSCEEEEEE
T ss_pred eEEeeccccccceeeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee-----ccccceeeeee
Confidence 99999876532111111 122345799999999765 4444 347899999999888766544 23457889999
Q ss_pred CCCCCeEEEeE--CCCcEEEEecCceE
Q 024451 240 SADGSALCTGS--WDTNLKIWAFGGYR 264 (267)
Q Consensus 240 ~p~~~~l~sgs--~dg~i~~w~~~~~~ 264 (267)
+|+++.|++++ .|+.|+||++...+
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 99999998765 79999999985543
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=225.77 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=177.9
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCC-----------------CC-----ccccccc-CCeeeEEEEEEecC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG-----------------NL-----PVSRMLS-GHKGYVSCCQYVPD 57 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~-----------------~~-----~~~~~~~-~h~~~v~~~~~~~~ 57 (267)
.+++|+|||+++||++.|++|+ |...+..-++ .. .....+. .|...|.+|+|+|+
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 3689999999999999999997 4332210000 00 0011222 56889999999997
Q ss_pred CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------ce
Q 024451 58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AV 131 (267)
Q Consensus 58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------~~ 131 (267)
+ .+|++++.||+|++||.++ ....+. ....-....+.+++|+| +++++++|+.||+|++||+..... .+
T Consensus 97 G-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 97 D-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp S-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred C-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence 6 5799999999999999654 222221 00000023599999997 577899999999999999875421 23
Q ss_pred EEe----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee---EEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 132 RTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL---QVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 132 ~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
..+ .+|...|.+++|+|+| +++++.|+++++||+..++.. ..+.. .+...|.+++|+ ++.+++++
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~----~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN----ASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC----CCSSCCCCEEEE--TTEEEEEC
T ss_pred eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc----cccCcEEEEEEE--CCEEEEEe
Confidence 454 5678899999999998 888999999999999876632 12211 123468999999 68888886
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEE--CCCCCeEEEeECCCcEEEEecCc
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
++.|++||....+..... .+|.+.|..++| +|++..|++++.||+ ++|.++.
T Consensus 244 -~~tIkLWd~~~~~~~~~~----~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~ 297 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSLK----TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE 297 (588)
T ss_dssp -SSEEEEEETTTTEEEEEE----CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred -CCeEEEEECCCCeEEEEE----cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence 699999998876652211 258899999999 999999999999999 9998754
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.7e-32 Score=219.26 Aligned_cols=227 Identities=18% Similarity=0.246 Sum_probs=184.0
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeec-CCCCCCCCCCcccccccC--CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNL-NSPTDKDGNLPVSRMLSG--HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+++|+|+++ +|++++.||.|++||+ ... ....+.+ |...|.++.|+| + .++++++.|+.|++||+.
T Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHH
T ss_pred EEEECCCCCcEEEEEcCCCeEEEEEeccCC--------ceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccc
Confidence 578999999 9999999999999998 642 1255677 999999999999 4 589999999999999987
Q ss_pred C---------CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-ccc-ceEEeeccccceeEEEE
Q 024451 78 T---------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASR-AVRTFHGHEGDVNTVKF 146 (267)
Q Consensus 78 ~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~i~~~~~ 146 (267)
+ +..... ..|...+.++++++. . +++++.|+.|++||++. ... .......|...+.++.|
T Consensus 131 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~--~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNN------TKVKNKIFTMDTNSS--R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp HHTTBCEEEEESCSSS------SSSCCCEEEEEECSS--E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred ccccccccccCCeeeE------EeeCCceEEEEecCC--c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 5 332221 237788999999854 2 88999999999999975 332 23344567889999999
Q ss_pred ec-CCCEEEEeeCCCcEEEEeCCCC------eeeEEEEeecCC-----CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 147 FP-DGNRFGTGSDDGTCRLFDIRTG------HQLQVYYQQHGE-----NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 147 ~~-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
+| +++++++++.|+.|++||++.. +....+.. +.. .+...|.+++|+|++++|++|+.||.|++||+
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec-ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 99 9999999999999999999876 44433332 211 11337999999999999999999999999999
Q ss_pred CccceeeecccccCCc-cceEEEEEECCCCCeEEEeECCCc
Q 024451 215 LLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
...+.+..+ ..| .++|.+++ |++++|++|+.||.
T Consensus 281 ~~~~~~~~~----~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 281 QTRKKIKNF----AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TTTEEEEEC----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccHhHhhhh----hcccCCCceEec--CCCCeEEEEecCCc
Confidence 888776554 356 89999999 99999999999998
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=227.77 Aligned_cols=254 Identities=14% Similarity=0.178 Sum_probs=183.6
Q ss_pred ceeeCCCC--CeEEEccCCCeEEEeecCCCCCC--------------------CCCCcc------------c-ccccCCe
Q 024451 2 TCAFSPTG--QSVACGGLDSVCSIFNLNSPTDK--------------------DGNLPV------------S-RMLSGHK 46 (267)
Q Consensus 2 ~~~~~~~g--~~l~~~~~d~~v~~w~~~~~~~~--------------------~~~~~~------------~-~~~~~h~ 46 (267)
+++|+|++ .+|++++.|++|++||+...... ....+. . ....+|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 57899998 89999999999999998641100 000000 1 1146899
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-eEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd 123 (267)
..|.+++|+|++ .+|++| .|+.|++||+++.. ....+ ......+|...|.+++|+|.+..++++++.|+.|++||
T Consensus 178 ~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 178 YHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp SCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred cceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 999999999975 578888 79999999998432 22222 11123468899999999976547899999999999999
Q ss_pred CCCccc---ceEEeecccc------------ceeEEEEecCCCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCC---
Q 024451 124 TRVASR---AVRTFHGHEG------------DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENE--- 184 (267)
Q Consensus 124 ~~~~~~---~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--- 184 (267)
++.... ....+.+|.. .|.+++|+|++++|++++. +.|++||+++ ++.+..+..+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccc
Confidence 975432 1566777765 8999999999999999999 9999999987 555544432211000
Q ss_pred -------CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc----------------------------ccCC
Q 024451 185 -------IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS----------------------------LQNS 229 (267)
Q Consensus 185 -------~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~ 229 (267)
...+..++|+|++++|++|+.||.|++||+...+.+..... ....
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccc
Confidence 00133489999999999999999999999887654321100 0113
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+...|..++|+|++++||+++.++ +.+|.
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 456789999999999999998776 66664
No 103
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-31 Score=240.10 Aligned_cols=238 Identities=23% Similarity=0.385 Sum_probs=195.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-e
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-L 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~ 80 (267)
+++|+|+|++|++++.||.|++||+... .....+.+|.+.|+++.|+|++ .+|++++.|++|++||+.++ .
T Consensus 60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 60 AGKFIARKNWIIVGSDDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp EEEEEGGGTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCce
Confidence 5789999999999999999999998652 2456678899999999999976 57999999999999999876 3
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec--CCCEEEEeeC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP--DGNRFGTGSD 158 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~ 158 (267)
....+ .+|...+.+++|+|.++..+++++.||.|++||++...........+...+.+++|+| +++++++++.
T Consensus 132 ~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 132 LEQTF-----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp EEEEE-----ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred EEEEE-----cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 33333 3688899999999756778999999999999998754433333334458899999999 8999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|+.|++||+++++....+.. +...+.+++|+|+++++++|+.||.|++||..+.+....+ ..|...+.+++
T Consensus 207 dg~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~ 277 (814)
T 3mkq_A 207 DLTIKIWDYQTKSCVATLEG-----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIA 277 (814)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEE
T ss_pred CCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEE
Confidence 99999999998876655432 2346999999999999999999999999999887766544 45778999999
Q ss_pred ECCCCC--eEEEeECCCcEEEEecCc
Q 024451 239 LSADGS--ALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p~~~--~l~sgs~dg~i~~w~~~~ 262 (267)
|+|++. ++++++ |+.+.+|++..
T Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (814)
T 3mkq_A 278 THPTGRKNYIASGF-DNGFTVLSLGN 302 (814)
T ss_dssp ECTTCGGGEEEEEE-TTEEEEEECSC
T ss_pred EccCCCceEEEEEe-CCCEEEEEcCC
Confidence 999987 455554 67788887643
No 104
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-31 Score=241.38 Aligned_cols=241 Identities=10% Similarity=0.095 Sum_probs=185.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|++||+|+.||+|++|+.... .... ...|...|.+++|+| +. +|++++.|++|++||+.++..
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~-------~~~~-~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQV-------EVVI-KLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTC-------EEEE-ECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCc-------EEEE-EcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcE
Confidence 6899999999999999999999997531 1222 235888999999999 54 899999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----------EEeeccccceeEEEEecC-C
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----------RTFHGHEGDVNTVKFFPD-G 150 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----------~~~~~~~~~i~~~~~~~~-~ 150 (267)
...+. |...|.+++++| +++++++|+.||.|++||++...... ..+.+|.+.|.+++|+|+ +
T Consensus 92 ~~~~~------~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 92 LTTVF------VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEEEE------CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEEEc------CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 66552 556899999986 46788999999999999987533210 223578899999999996 5
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-------------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-------------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
..+++++.|+.| +||+++++....+..+.. ..+...|.+++|+|++.+|++|+.||.|++||+.++
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 789999999999 999999877655432200 112356999999999999999999999999999877
Q ss_pred ceeee--ccc--ccC----------CccceEEEEEEC----CCC-CeEEEeECCC-----cEEEEec
Q 024451 218 KVVLN--LGS--LQN----------SHEGRITCLGLS----ADG-SALCTGSWDT-----NLKIWAF 260 (267)
Q Consensus 218 ~~~~~--~~~--~~~----------~~~~~v~~~~~~----p~~-~~l~sgs~dg-----~i~~w~~ 260 (267)
+.+.. +.. ... .|.++|.+++|+ |++ .+|++|+.|. .+++|++
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 65432 110 000 245689999995 553 5788887763 7888875
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-31 Score=248.41 Aligned_cols=243 Identities=23% Similarity=0.388 Sum_probs=193.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+|++|++++.|++|++||+... .....+.+|...|.++.|+|++ ..++++++.|+.|++||+.++.
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATG-------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCC-------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 6889999999999999999999998753 2566788999999999999853 3578899999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc------------------------------
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA------------------------------ 130 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~------------------------------ 130 (267)
....+ .+|...|.+++|++ +++.+++++.||.|++||++.....
T Consensus 735 ~~~~~-----~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 735 CRNTM-----FGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp EEEEE-----CCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred hhhee-----cCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 76655 36889999999997 4668899999999999997532110
Q ss_pred -----------------------eE-EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451 131 -----------------------VR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 186 (267)
Q Consensus 131 -----------------------~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (267)
.. ...+|...+.+++|+|+++++++++.|+.|++||+.++.....+. .+..
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----~h~~ 883 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-----GHLS 883 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-----CCSS
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-----CCcc
Confidence 00 112677889999999999999999999999999999887655442 2334
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-----------------------------------------------
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV----------------------------------------------- 219 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~----------------------------------------------- 219 (267)
.|.+++|+|+++.+++++.||.+++||......
T Consensus 884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 688888888888888888888888888532100
Q ss_pred ------------e-----------eec-----ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 220 ------------V-----------LNL-----GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 220 ------------~-----------~~~-----~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+ ... ......|...|.+++|+|+|++|++++.||.|++|++..
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 0 000 001135888999999999999999999999999999754
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-30 Score=220.08 Aligned_cols=231 Identities=24% Similarity=0.416 Sum_probs=183.1
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
+++.+++++.|++|++||+... .....+.+|...|.++.|. +.++++++.|+.|++||+.++.....+
T Consensus 208 ~~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 275 (445)
T 2ovr_B 208 HEKRVVSGSRDATLRVWDIETG-------QCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTL-- 275 (445)
T ss_dssp ETTEEEEEETTSEEEEEESSSC-------CEEEEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEE--
T ss_pred cCCEEEEEeCCCEEEEEECCCC-------cEEEEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEe--
Confidence 4567888888888888887542 2445667888889888882 357888999999999998887766555
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 167 (267)
.+|...+.++.+ ++..+++++.|+.|++||++.. +....+.+|...+.++.++ ++++++++.|+.|++||+
T Consensus 276 ---~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 276 ---QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDI 346 (445)
T ss_dssp ---CCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred ---cCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEEC
Confidence 368888999988 3567899999999999999754 4667788898888888774 679999999999999999
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-cCCccceEEEEEECCCCCeE
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l 246 (267)
++++.+..+... ..+...|.+++|+ ++++++|+.||.|++||...++.+..+... ...|.+.|.+++|+|++.+|
T Consensus 347 ~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 347 KTGQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp TTCCEEEEECST--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred CCCcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 988776554321 1234578999985 579999999999999999888766554211 13578899999999999999
Q ss_pred EEeECCCc----EEEEecCce
Q 024451 247 CTGSWDTN----LKIWAFGGY 263 (267)
Q Consensus 247 ~sgs~dg~----i~~w~~~~~ 263 (267)
|+|+.||+ +.+|+|..-
T Consensus 423 a~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECSSSSSCCEEEEEECCCC
T ss_pred EEcccCCCCccEEEEEECCCC
Confidence 99999998 999998753
No 107
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.1e-31 Score=229.32 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=198.7
Q ss_pred ceeeCC--CCCeEEEccCCCeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEE
Q 024451 2 TCAFSP--TGQSVACGGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLW 74 (267)
Q Consensus 2 ~~~~~~--~g~~l~~~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iw 74 (267)
+++|+| ++++|++++.||+|++||+..... ..........+.+|...|.+++|+|++ .+|++++.| +.|++|
T Consensus 69 ~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEET
T ss_pred EEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEE
Confidence 578999 999999999999999999853100 000123455678899999999999976 578888887 689999
Q ss_pred eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc---ceeEEEEecC-C
Q 024451 75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DVNTVKFFPD-G 150 (267)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~~~~-~ 150 (267)
|. +.....+ .+|...|.+++|++.+..++++++.|+.|++||.+. .+....+.+|.. .|.+++|+|+ +
T Consensus 148 d~--~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 148 DS--GNSLGEV-----SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp TT--CCEEEEC-----CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred EC--CCcceee-----ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCC
Confidence 83 3444433 468899999999986655899999999999999874 446677888988 9999999999 9
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 230 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 230 (267)
+++++++.|+.|++||+++++.+..+.. ....+...|.+++|+ ++.++++++.||.|++||+...+....+......+
T Consensus 220 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp CEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred CEEEEEeCCCeEEEEECCCCCEeEEecc-cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 9999999999999999998876654311 000234579999999 99999999999999999998877665543222334
Q ss_pred cceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 231 EGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
...+.++.|. +++++++++.||.|++|++...
T Consensus 298 ~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 298 GNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp GGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred cCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 5678888885 8999999999999999998653
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-31 Score=216.89 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=177.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEec--CCCeeEEEeeCCCeEEEEe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWD 75 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~v~iwd 75 (267)
+++|+|+ +++++.|+++++|+..... ...+. .......+|...|.+++|+| ++ .++++++.|++|++||
T Consensus 81 ~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 81 TGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK-VLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQS 155 (343)
T ss_dssp TTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC-EEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEE
T ss_pred eeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc-eeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEE
Confidence 3567777 9999999999999876311 00111 12223346778999999999 65 5899999999999999
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEE
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~ 154 (267)
++++....... ..+...+.+++|+| ++.++++|+.|+.|++||++........+.. |.+.|.+++|+|++.+|+
T Consensus 156 ~~~~~~~~~~~----~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 156 YEDDSQYIVHS----AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp SSSSCEEEEEC----CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred CCCCcEEEEEe----cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 99887654442 23555789999996 5678999999999999999865543366777 999999999999999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE--EEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccCCcc
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
+++.| .|++||+++.+....+.... .+...+ .+++|+|++++|++++. |+.+++|+..........
T Consensus 231 s~~~~-~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------- 299 (343)
T 3lrv_A 231 VECDQ-TVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------- 299 (343)
T ss_dssp EEESS-BEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------
T ss_pred EEeCC-eEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------
Confidence 99954 99999999876543211100 011122 46999999999999998 999999997654332211
Q ss_pred ceEEEEEECC---CCCeEEEeECCCcEEEEecCc
Q 024451 232 GRITCLGLSA---DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 232 ~~v~~~~~~p---~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.++..++|+| +.+.+++++.||.++++-..+
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 4678889998 889999999999999986443
No 109
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=243.88 Aligned_cols=254 Identities=15% Similarity=0.131 Sum_probs=184.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-----cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~ 76 (267)
.++|+|+|+.|++|+.|++|++||+........ ......+ .+|...|++++|+|++ ++||+|+.|++|++||+
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-ASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-BCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEE
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCC-ceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEe
Confidence 357899999999999999999999876421100 0000011 2899999999999976 58999999999999999
Q ss_pred CCCeeEE--------E--------------------------------eCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451 77 TTGLRTS--------V--------------------------------FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 77 ~~~~~~~--------~--------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
.++.... . .......+|...|.+++|+| ++ ++++|+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D 595 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAA 595 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETT
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCC
Confidence 7652100 0 00012246999999999986 45 89999999
Q ss_pred CeEEEEeCCCcccce-----EEee-ccccceeEEEEe-----cCC---CEEEEeeCCCcEEEEeC---CCCeeeEEEEee
Q 024451 117 STARLWDTRVASRAV-----RTFH-GHEGDVNTVKFF-----PDG---NRFGTGSDDGTCRLFDI---RTGHQLQVYYQQ 179 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~-----~~~~-~~~~~i~~~~~~-----~~~---~~l~~~~~d~~i~iwd~---~~~~~~~~~~~~ 179 (267)
++|++||++... .+ +.+. +|...|++++|+ ||| .++++++.|++|++||+ .+++....+..+
T Consensus 596 ~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 596 GSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp SEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred CcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 999999986432 22 1233 788999999999 885 89999999999999999 677665555443
Q ss_pred cCCCCCCcEEEEE-Ec----------------------cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 180 HGENEIPHVTSIA-FS----------------------ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 180 ~~~~~~~~v~~~~-~s----------------------~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
...++..+|..++ |+ +++..|+++ +..+++|++.+.+..... ..|...+.+
T Consensus 675 ~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~----~~~~~~~~~ 748 (902)
T 2oaj_A 675 TNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKG----FKYPLAATG 748 (902)
T ss_dssp EECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEE----CSSCEEEEE
T ss_pred eecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeE----cccceeeeE
Confidence 3222334555555 65 344444444 789999999887776554 234455666
Q ss_pred E---E------ECCCCCeEEEeECCCcEEEEecCceEec
Q 024451 237 L---G------LSADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 237 ~---~------~~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
+ . |++++..|++++.||+|++|++-+++.+
T Consensus 749 v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 749 LSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp EEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHH
Confidence 5 6 7889999999999999999998777654
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-30 Score=219.77 Aligned_cols=248 Identities=12% Similarity=0.084 Sum_probs=186.0
Q ss_pred ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCccccccc--CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS--GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+++|+|+|++| ++++.|++|++||+.... + .....+. .|...|.+++|+|++ .+|++++.|+.|++|++.+
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---~--~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVDKTS---K--NVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECSSS---S--SCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECcCCC---C--ceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCC
Confidence 57899999996 999999999999986211 1 1333443 567889999999976 5899999999999999987
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEE
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
+..... ......+|...|.+++|++. .++++++++.|+.|++||++... .+.. +.+|...|.+++|+ ++++|++
T Consensus 181 ~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 181 IPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-IVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp CCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-CEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred cccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-eeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 653320 01122468899999999974 26789999999999999987544 3444 56899999999999 9999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeec--------------------CCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeC
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQH--------------------GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDT 214 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~ 214 (267)
++.|+.|++||+++++.+..+.... .......+.+++|+|+++++++++ .++.|++||+
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9999999999999988766553211 001224689999999999999999 8999999998
Q ss_pred --CccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEec
Q 024451 215 --LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAF 260 (267)
Q Consensus 215 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~ 260 (267)
.....+.....+ ..| +.|.+++|+|++.++++++. +..|++|.+
T Consensus 338 ~~~~~~~l~~~~~~-~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 338 SEKQKGDLALKQII-TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp CSSSTTCEEEEEEE-ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred ccCCCCceeeccEe-ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 443211111112 234 78999999996555554443 556899976
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.4e-30 Score=207.74 Aligned_cols=233 Identities=13% Similarity=0.108 Sum_probs=153.2
Q ss_pred eEEEccCCCeEEEeecCCCCCCCCCCcccccccC-------------------------CeeeEEEEEEecCC---CeeE
Q 024451 11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-------------------------HKGYVSCCQYVPDE---DTHL 62 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-------------------------h~~~v~~~~~~~~~---~~~l 62 (267)
.++++++. +|++|+..... +.....++.+ |...|.+++++|++ .+.+
T Consensus 56 ~~~~~~~~-~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l 130 (356)
T 2w18_A 56 CIITACED-VVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL 130 (356)
T ss_dssp EEEEEESS-EEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE
T ss_pred EEEEeccc-eEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE
Confidence 56777755 89999987631 1112222222 34567777777751 2456
Q ss_pred EEeeC--------------------CCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeC--CCCeEEEEecCCCeE
Q 024451 63 ITSSG--------------------DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTA 119 (267)
Q Consensus 63 ~s~~~--------------------d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d~~i 119 (267)
++++. |+.|++|++.. ++....+ .+|...+..++|++ .++..+++++.|++|
T Consensus 131 ~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TI 205 (356)
T 2w18_A 131 LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-----FLMPPEETILTFAEVQGMQEALLGTTIMNNI 205 (356)
T ss_dssp EEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-----EECCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred EeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-----ccCCCceeeEEeeccCCCCceEEEecCCCcE
Confidence 65443 77777777733 4333222 24555555555554 355789999999999
Q ss_pred EEEeCCCcccceEEeeccc---cceeEEEEecCCCEE------------EEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451 120 RLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRF------------GTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
+|||++++ +.++.+.+|. ..+.+++|+|+++++ ++|+.|++|++||..+++.+..+......++
T Consensus 206 kIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh 284 (356)
T 2w18_A 206 VIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ 284 (356)
T ss_dssp EEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC
T ss_pred EEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC
Confidence 99999854 4566676543 357788999999876 5688999999999999887654321111122
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEEEec
Q 024451 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.....+..+ ++..+++|+.||.|+|||+.+++.+..+ ..|...+. +++|+|||++|++|+.|++|+||++
T Consensus 285 ~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL----~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 285 AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL----PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE----CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe----cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 222333333 3789999999999999999998877665 35655544 6899999999999999999999985
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-30 Score=212.08 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=172.0
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCe
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDST 118 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~ 118 (267)
..+.+|+..|++++|+|++ .+|++|+.|+.|++||+.++....... ....+|...|.+++|++. +++++++++.|+.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4567999999999999975 589999999999999998653211111 112468999999999975 4678999999999
Q ss_pred EEEEeCCCcc--------cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEe--------ec
Q 024451 119 ARLWDTRVAS--------RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--------QH 180 (267)
Q Consensus 119 i~iwd~~~~~--------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~ 180 (267)
|++||++... .....+.+|...|.+++|+|+ ++++++++.|+.|++||+++++.+..+.. ..
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999987532 346677789999999999999 99999999999999999987754322110 01
Q ss_pred CCCCCCcEEEEEEccC---CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC----CeEEEeECCC
Q 024451 181 GENEIPHVTSIAFSIS---GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG----SALCTGSWDT 253 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~dg 253 (267)
...+...+.+++|+|+ +..+++++.++.+.+|+....+.... . ....|...|.+++|+|++ ++|++|+.||
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA-A-KLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE-E-ECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee-e-ecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 1123456899999997 89999999999998887665543211 1 124689999999999998 8999999999
Q ss_pred cEEEEecCc
Q 024451 254 NLKIWAFGG 262 (267)
Q Consensus 254 ~i~~w~~~~ 262 (267)
.|++|++..
T Consensus 241 ~i~iwd~~~ 249 (351)
T 3f3f_A 241 RIRIFKITE 249 (351)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEeCCC
Confidence 999999754
No 113
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-30 Score=210.86 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=176.0
Q ss_pred CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEe
Q 024451 34 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 113 (267)
Q Consensus 34 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~ 113 (267)
+.......+.+|+..|++++|+|++ .+|++++.|+.|++||+.++.....+ .+|...|.+++|++ ++++++++
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s~ 92 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSIDVDC-FTKYCVTG 92 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECT-TSSEEEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcC-CCCEEEEE
Confidence 3344455689999999999999975 58999999999999999988777665 36888999999997 56788999
Q ss_pred cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeec--------
Q 024451 114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQH-------- 180 (267)
Q Consensus 114 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~-------- 180 (267)
+.|+.|++||++.. +....+. +...+.++.|+|+++++++++.+ +.|++||++.......+....
T Consensus 93 ~~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 93 SADYSIKLWDVSNG-QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp ETTTEEEEEETTTC-CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eCCCeEEEEECCCC-cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 99999999999754 3455555 78899999999999999999999 999999997654321111110
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.......+.+++|+|+++++++++.||.|++||+.. .+....+ ..|...|.+++|+|++++|++++.||.|++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI----DLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE----ecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 011122689999999999999999999999999987 4444333 45888999999999999999999999999999
Q ss_pred cCce
Q 024451 260 FGGY 263 (267)
Q Consensus 260 ~~~~ 263 (267)
+...
T Consensus 247 ~~~~ 250 (369)
T 3zwl_B 247 VSTL 250 (369)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8653
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-30 Score=217.20 Aligned_cols=233 Identities=21% Similarity=0.331 Sum_probs=180.8
Q ss_pred CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC--------Cc
Q 024451 17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--------GE 88 (267)
Q Consensus 17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--------~~ 88 (267)
.++++++|+.... .....+.+|.+.|++++|+|.++.+|++|+.|+.|++||+.++.....+. ..
T Consensus 21 ~~~~~~v~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 21 AESTRRVLGLELN-------KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHHHHHHHTEEEC-------TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred ccCcceeeccccC-------cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence 4556778877542 24556788999999999999334689999999999999998764322221 11
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC---CCEEEEeeCCCcEEEE
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGTCRLF 165 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iw 165 (267)
...+|...|.+++|++.+.+++++++.|+.|++||++.. .....+. +...+.++.+.|. +.++++++.|+.|++|
T Consensus 94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 123589999999999867778999999999999999753 3344443 6778999999884 4599999999999999
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee-eec-----------ccccCCccc
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV-LNL-----------GSLQNSHEG 232 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~-~~~-----------~~~~~~~~~ 232 (267)
|+++++....+.. +...|.+++|+|++. .+++|+.||.|++||++..... ..+ ......|..
T Consensus 172 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 172 DLKSGSCSHILQG-----HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp ESSSSCCCEEECC-----CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eCCCcceeeeecC-----CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 9998876655432 334699999999998 5889999999999998765421 111 111246889
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.|.+++|+|++++|++++.||.|++|++...
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 9999999999999999999999999998654
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.2e-30 Score=217.85 Aligned_cols=208 Identities=22% Similarity=0.366 Sum_probs=167.5
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC----------CeeEEEeCCccccCCccceEEEEEeCCCCeEE
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 110 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (267)
...+|.+.|++++|+|++..++++++.||.|++||+.+ ......+ .+|...+.+++|++....++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-----RGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-----ECCSSCCCCEEECTTSTTEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-----cCCCCCeEEEEeCCCCCCeE
Confidence 34689999999999997667899999999999999976 2222222 46888999999998665589
Q ss_pred EEecCCCeEEEEeCCCccc------ceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCe---eeEEEEeec
Q 024451 111 VSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQH 180 (267)
Q Consensus 111 ~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~ 180 (267)
++++.||.|++|++..... ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++.. ....+.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--- 274 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--- 274 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE---
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee---
Confidence 9999999999999875221 1355668999999999999 67899999999999999998763 333322
Q ss_pred CCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccc-eeeecccccCCccceEEEEEECCCCC-eEEEeECCCcEEE
Q 024451 181 GENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKI 257 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~ 257 (267)
.+...+.+++|+|++. ++++|+.||.|++||++... .+..+ ..|...|.+++|+|+++ +|++++.||.|++
T Consensus 275 --~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 275 --AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp --CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----ECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred --cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----ecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 2234699999999987 68899999999999988643 23222 35889999999999985 6899999999999
Q ss_pred EecCc
Q 024451 258 WAFGG 262 (267)
Q Consensus 258 w~~~~ 262 (267)
|++..
T Consensus 349 wd~~~ 353 (430)
T 2xyi_A 349 WDLSK 353 (430)
T ss_dssp EEGGG
T ss_pred EeCCC
Confidence 99864
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.4e-29 Score=207.35 Aligned_cols=215 Identities=19% Similarity=0.285 Sum_probs=165.4
Q ss_pred cccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCC-CeeE-EEeCCccccCCccceEEEEEeCCCCeEEEE
Q 024451 37 PVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITT-GLRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVS 112 (267)
Q Consensus 37 ~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~-~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 112 (267)
.....+.+|...|++++|+|++ +.+|++|+.|+.|++||+.+ +... ..+ .+|...|.+++|++ +++++++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~l~s 103 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-----QMHTGPVLDVCWSD-DGSKVFT 103 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-----EECSSCEEEEEECT-TSSEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-----ccccCCEEEEEECc-CCCEEEE
Confidence 3556788999999999999975 57999999999999999987 4333 222 46889999999997 5678899
Q ss_pred ecCCCeEEEEeCCCcccceEEeeccccceeEEEE--ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec----------
Q 024451 113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF--FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---------- 180 (267)
Q Consensus 113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------- 180 (267)
++.|+.|++||++... ...+.+|...|.++.| +|+++++++++.|+.|++||+++++.+..+....
T Consensus 104 ~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181 (368)
T ss_dssp EETTSEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred EcCCCcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence 9999999999997533 3346679999999999 8899999999999999999998876554432111
Q ss_pred --------------------------CCCCCCcEEEEEEccCCCE----EEEEEeCCeEEEEeCCccc---eeeeccccc
Q 024451 181 --------------------------GENEIPHVTSIAFSISGRL----LFAGYSNGDCYVWDTLLAK---VVLNLGSLQ 227 (267)
Q Consensus 181 --------------------------~~~~~~~v~~~~~s~~~~~----l~~g~~dg~i~i~d~~~~~---~~~~~~~~~ 227 (267)
..........+++.++... +++|+.||.|++||..... ....+
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~---- 257 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF---- 257 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE----
T ss_pred eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee----
Confidence 0001123445555544443 9999999999999987652 22221
Q ss_pred CCccc------------eEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 228 NSHEG------------RITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 228 ~~~~~------------~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
..|.. +|.+++|+|++++|++|+.||.|++|++...
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 23333 7999999999999999999999999998654
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=230.87 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=169.3
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCC
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCD 116 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d 116 (267)
..+.+|++.|++++|+|++ .++++|+.||+|++||+..+ .....+ .+|...|.+++|+++. ++++++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l-----~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceec-----cCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 4578999999999999976 58999999999999999744 333333 4789999999998652 6789999999
Q ss_pred CeEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451 117 STARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193 (267)
Q Consensus 117 ~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 193 (267)
|.|++||+.... .....+.+|...|.++.|+|+ ++.+++++.||.|++||++++........ ..+...+.+++|
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~~~v~~l~~ 153 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHAIGVNSASW 153 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCSSCEEEEEE
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCCCceEEEEe
Confidence 999999987532 145667789999999999999 99999999999999999987743322111 123357999999
Q ss_pred cc-------------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC---CCeEEEeECCCcEEE
Q 024451 194 SI-------------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD---GSALCTGSWDTNLKI 257 (267)
Q Consensus 194 s~-------------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~sgs~dg~i~~ 257 (267)
+| ++..+++|+.||.|++||+...............|.++|.+++|+|+ +++|++|+.||.|++
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 99 58999999999999999987654322221222578999999999999 899999999999999
Q ss_pred EecCc
Q 024451 258 WAFGG 262 (267)
Q Consensus 258 w~~~~ 262 (267)
|++..
T Consensus 234 wd~~~ 238 (753)
T 3jro_A 234 WTQDN 238 (753)
T ss_dssp EEESS
T ss_pred ecCCC
Confidence 99865
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=214.27 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=170.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee-----eEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~v~iwd~ 76 (267)
+|+|+|+|.+||+++.||+|++||... +...+. |.. .|.+++|+|++ ++|++|+.||+|+|||+
T Consensus 90 ~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSI 158 (588)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEEC
Confidence 689999999999999999999999532 344455 555 49999999975 68999999999999999
Q ss_pred CCCee-------EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEe-eccccceeEEEE
Q 024451 77 TTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTF-HGHEGDVNTVKF 146 (267)
Q Consensus 77 ~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~i~~~~~ 146 (267)
.++.. ...+.... .+|...|.+++|+|. + +++++.|+.|++|++..... ....+ .+|...|.+++|
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~-~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSD-AGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSC-TTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred CCCccccccceeeeeeeccc-ccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 88641 33332222 468889999999974 3 78899999999999865332 12345 478889999999
Q ss_pred ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE--ccCCCEEEEEEeCCeEEEEeCCccce-----
Q 024451 147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLAKV----- 219 (267)
Q Consensus 147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~g~~dg~i~i~d~~~~~~----- 219 (267)
+ ++.+|+++ |++|++||+.+++...... ++...+..+.| +|++..+++++.+|. ++|.......
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~-----gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~ 305 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKT-----GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNI 305 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEEC-----SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCS
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEc-----CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCce
Confidence 9 68999887 6999999998766533221 23346899999 999999999999999 9998632110
Q ss_pred --------ee--ec--ccc-cCCccceEEEEEECCCCCeEEEeEC
Q 024451 220 --------VL--NL--GSL-QNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 220 --------~~--~~--~~~-~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
+. +. ..+ ...+...|.+++|+|||+.+|+++.
T Consensus 306 l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 306 IAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 00 00 000 1123557999999999999999874
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.2e-28 Score=201.67 Aligned_cols=234 Identities=15% Similarity=0.176 Sum_probs=180.9
Q ss_pred ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+|+|+.| ++++.|++|++||+... .....+..|. .+.+++|+|++..++++++.|+.|++||+.++.
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATN-------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTT-------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCC-------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 57899999876 77889999999998642 2334444444 899999999876555667778999999999887
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d 159 (267)
....+. +...+.++++++.+..++++++.|+.|++||++.. +....+..+ ..+.++.|+|+++++ ++++.|
T Consensus 108 ~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 108 VAGTVK------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp EEEEEE------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred EEEEEe------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCC
Confidence 665543 33457899999766556688999999999998743 345555544 457999999999887 677889
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
+.|++||+++++....+.. ...+.+++|+|+++++++++ .++.|++||+...+.+..+. .|. .+.+
T Consensus 180 ~~v~~~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~----~~~-~~~~ 248 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVKV------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----VGP-DPAG 248 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----CCS-SEEE
T ss_pred CEEEEEECCCCeEEEEEec------CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe----cCC-CccE
Confidence 9999999998876544321 13578999999999999888 58999999998776654432 233 4789
Q ss_pred EEECCCCCeE-EEeECCCcEEEEecCc
Q 024451 237 LGLSADGSAL-CTGSWDTNLKIWAFGG 262 (267)
Q Consensus 237 ~~~~p~~~~l-~sgs~dg~i~~w~~~~ 262 (267)
++|+|++++| ++++.|+.|++|++..
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 9999999987 6778899999999754
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=7.4e-30 Score=212.17 Aligned_cols=252 Identities=14% Similarity=0.105 Sum_probs=160.1
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCC-Ccccc-cccCCeeeEEEEEE-------------------ecCCCeeEEE
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGN-LPVSR-MLSGHKGYVSCCQY-------------------VPDEDTHLIT 64 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~-~~~~h~~~v~~~~~-------------------~~~~~~~l~s 64 (267)
+|++..|+.++.|+.|++|+...+...... .+... ....|...+..+.| .|....++++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 106 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC 106 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence 455555666677889999986543211110 00000 00112222333332 2223467999
Q ss_pred eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-------CCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-------SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137 (267)
Q Consensus 65 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~ 137 (267)
++.|++|+|||.+++............+|...|++++|+| .++++|++++.|++|+|||++... ....+.+|
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~ 185 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPL 185 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEEC
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCC
Confidence 9999999999998876543322234568999999999985 256799999999999999987543 45566678
Q ss_pred ccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeec--------------------CCCCCCcEEEEEEc-c
Q 024451 138 EGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------------------GENEIPHVTSIAFS-I 195 (267)
Q Consensus 138 ~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s-~ 195 (267)
...+.+++|+|++ ++|++++.|++|++||+++++......... ...+...+.++.|+ +
T Consensus 186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence 8999999999987 479999999999999998876433221110 01123456778876 8
Q ss_pred CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE------------------EEEECC--CCCeEEEeECCCcE
Q 024451 196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT------------------CLGLSA--DGSALCTGSWDTNL 255 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~------------------~~~~~p--~~~~l~sgs~dg~i 255 (267)
++..+++++.|+.+++||+...+....+. .|...+. ...++| ++.++++|+.||.|
T Consensus 266 dg~~l~s~s~d~~i~vwd~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V 341 (393)
T 4gq1_A 266 DGSGILAMCKSGAWLRWNLFANNDYNEIS----DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI 341 (393)
T ss_dssp TTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEECccCCCCceEe----eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE
Confidence 99999999999999999987654332221 1222222 223333 34467889999999
Q ss_pred EEEecCc
Q 024451 256 KIWAFGG 262 (267)
Q Consensus 256 ~~w~~~~ 262 (267)
+||+...
T Consensus 342 ~lwd~~~ 348 (393)
T 4gq1_A 342 QLINTYE 348 (393)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9999743
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.8e-28 Score=201.61 Aligned_cols=235 Identities=14% Similarity=0.155 Sum_probs=183.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+++++++++.|+.|++||+... .....+..|...+.+++|+|++..++++++.|+.|++||+.++..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTL-------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTC-------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCc-------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 4678999999999999999999998642 244556688899999999998765556777899999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEec--------CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
...+. +...+..+++++.+ +.+++++ .|+.|++||++.. +.... ..|...+.+++|+|+++.+
T Consensus 247 ~~~~~------~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 247 IRKTD------KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKE-KLIDT-IGPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEECC------CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTT-EEEEE-EEEEECEEEEEECSSTTEE
T ss_pred EEEec------CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCC-cEEee-ccCCCCcceEEECCCCCEE
Confidence 65543 23458889998754 4555655 5889999998743 33333 3466688999999999754
Q ss_pred -EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---------------CCeEEEEeCCcc
Q 024451 154 -GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---------------NGDCYVWDTLLA 217 (267)
Q Consensus 154 -~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---------------dg~i~i~d~~~~ 217 (267)
++++.|+.|++||+++++....+. . ...+.+++|+|+++++++++. ||.|++||..+.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~--~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP--V----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--C----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEEecCCCEEEEEECCCCcEEEEec--C----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 666899999999999877655432 1 235889999999999988876 579999999887
Q ss_pred ceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecCce
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFGGY 263 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~~ 263 (267)
+....+. +...+.+++|+|+|++|++++. |+.|++|++.++
T Consensus 392 ~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~~ 433 (433)
T 3bws_A 392 TVKEFWE-----AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF 433 (433)
T ss_dssp EEEEEEE-----CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETTC
T ss_pred cEEEEec-----CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecCC
Confidence 7665442 2456899999999999998875 999999998763
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-27 Score=200.83 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=186.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++.++++++.|++|++||+...... .......+.+|...|.+++|+|+ +.++++++.|+.|++||++++..
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAY 203 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceE
Confidence 5789998899999999999999998653210 00011145689999999999885 46899999999999999998776
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee----
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---- 157 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 157 (267)
...+. .|...+.++++++.+..++++++.|+.|++||++.. +....+.. ...+.+++|+|+++.+++++
T Consensus 204 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 204 KATVD-----LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp EEEEE-----CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESC
T ss_pred EEEEc-----CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCC
Confidence 65542 467789999999876666677778999999998743 34455544 34589999999999999887
Q ss_pred ----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451 158 ----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 158 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
.|+.|++||+++++........ ..+..++|+|+++.+ ++++.++.|++||....+....+ .+..
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~ 345 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLIDTIGPP------GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-----PVFD 345 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEEEEEEEE------ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-----ECSS
T ss_pred ccccCCCeEEEEECCCCcEEeeccCC------CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-----cCCC
Confidence 5889999999988765443211 247889999999755 56688999999999877665443 2556
Q ss_pred eEEEEEECCCCCeEEEeEC---------------CCcEEEEecCce
Q 024451 233 RITCLGLSADGSALCTGSW---------------DTNLKIWAFGGY 263 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~---------------dg~i~~w~~~~~ 263 (267)
.+.+++|+|+|++|++++. ||.|++|+....
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 7899999999999988877 579999997543
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.9e-27 Score=195.12 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=178.0
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
+.++++++.|++|++||+... .....+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~-------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~-- 71 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN-------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-- 71 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT-------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEcCCCCEEEEEECCCC-------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--
Confidence 357899999999999998642 2445556664 489999999876555788899999999999887766553
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCCCcEEEEeC
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDI 167 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iwd~ 167 (267)
+...+.++++++.+..++++++.++.|++||+... +....+.. ...+.+++|+|+++.+ ++++.|+.|++||+
T Consensus 72 ----~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 72 ----AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp ----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ----CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 22378999999866666677778899999998753 34455543 4568999999999977 68888999999999
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
++++....+.. + ..+..++|+|+++.+ +++..++.|++||+...+..... .+...+.+++|+|++++|
T Consensus 146 ~~~~~~~~~~~-~-----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 146 VTKAVINTVSV-G-----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----KVEAAPSGIAVNPEGTKA 214 (391)
T ss_dssp TTTEEEEEEEC-C-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----ECSSEEEEEEECTTSSEE
T ss_pred CCCcEEEEEec-C-----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----ecCCCccceEECCCCCEE
Confidence 98876654432 1 246899999999987 56778899999999887655433 245678999999999999
Q ss_pred EEeE---CCCcEEEEecCce
Q 024451 247 CTGS---WDTNLKIWAFGGY 263 (267)
Q Consensus 247 ~sgs---~dg~i~~w~~~~~ 263 (267)
++++ .|+.|++|++...
T Consensus 215 ~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEECSSCCEEEEEETTTT
T ss_pred EEEecCcCCCcEEEEECCCC
Confidence 9888 6999999998643
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.6e-27 Score=195.47 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=146.3
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
.....+|...|.+++|+|++ .+|++|+.| .+++||.++........ ...+..+.+.+....++++++.|+.
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIMSQE-------MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp -------CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEEEEE-------CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred ccccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceeeeee-------cCCeEEEEEcCCCCEEEEEECCccE
Confidence 34557899999999999976 578877766 47899988765443221 1135566677665556678888999
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCC-----------------------------------CEEEE--eeCCCc
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-----------------------------------NRFGT--GSDDGT 161 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~d~~ 161 (267)
|++||.+.. +.+..+. +...|.++.++++. ++++. ++.||.
T Consensus 83 v~iWd~~~~-~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~ 160 (355)
T 3vu4_A 83 VHIWDDVKK-QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ 160 (355)
T ss_dssp EEEEETTTT-EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred EEEEECCCC-cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence 999998753 3444444 55677777776542 23333 567888
Q ss_pred EEEEeCCCCee----------------eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe-EEEEeCCccceeeecc
Q 024451 162 CRLFDIRTGHQ----------------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLG 224 (267)
Q Consensus 162 i~iwd~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~ 224 (267)
|++||+++++. ...+ ..+...|.+++|+|++++|++|+.||. |++||+.+++.+..+.
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLI-----KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp EEEEECCC------------------CCEEE-----CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCccccccccccccccCcccEEE-----EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 88888876541 1111 234457999999999999999999998 9999998887765542
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
. ..|...|.+++|+|++++|++|+.|++|++|++.
T Consensus 236 ~--g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 236 R--GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp C--TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred c--CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 0 1288999999999999999999999999999974
No 125
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=9.4e-27 Score=187.20 Aligned_cols=206 Identities=17% Similarity=0.242 Sum_probs=157.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCC----------------------------------CCCCcccccccCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK----------------------------------DGNLPVSRMLSGHKG 47 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~----------------------------------~~~~~~~~~~~~h~~ 47 (267)
+++|+|+|++|++|+.|++|++|++...... .........+.+|..
T Consensus 72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (318)
T 4ggc_A 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151 (318)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC
Confidence 5789999999999999999999998753100 000112345678899
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEE--EEecCCCeEEEEeCC
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF--VSGSCDSTARLWDTR 125 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~s~~~d~~i~iwd~~ 125 (267)
.+.++.+.+.+ .++++++.|++|++||+.++....... .....+...+.++.+.+.....+ ++++.++.|++||.+
T Consensus 152 ~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 152 EVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred ceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 99999999875 589999999999999998754322111 11235677888998887666554 467789999999987
Q ss_pred CcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
... ......+...+..+.|+|+++.+++++ .|+.|++||+++++.+..+.. +...|.+++|+|++++|++|
T Consensus 230 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 230 SGA--CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp TCC--EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEE
T ss_pred ccc--ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEE
Confidence 533 233345677899999999998887654 899999999999887765532 34579999999999999999
Q ss_pred EeCCeEEEEeCCc
Q 024451 204 YSNGDCYVWDTLL 216 (267)
Q Consensus 204 ~~dg~i~i~d~~~ 216 (267)
+.||.|++||+..
T Consensus 303 s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 303 AADETLRLWRCFE 315 (318)
T ss_dssp ETTTEEEEECCSC
T ss_pred ecCCeEEEEECCC
Confidence 9999999999754
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.5e-27 Score=189.00 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=128.8
Q ss_pred CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec--CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCc
Q 024451 17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP--DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 94 (267)
Q Consensus 17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 94 (267)
.|++|++|++.+. + .....+.+|...++.++|+| .+..+|++++.|++|||||+.+++.+..+.+. ..+.
T Consensus 155 ~d~~V~~~~~s~d----G--~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v 226 (356)
T 2w18_A 155 SDQQVEVMTFAED----G--GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQ 226 (356)
T ss_dssp TTCEEEEEEECTT----S--CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--C---
T ss_pred CCCcEEEEEECCC----C--ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--Ccce
Confidence 4888888887432 1 13445667888888888877 23468999999999999999999887777421 1123
Q ss_pred cceEEEEEeCCCCeEE------------EEecCCCeEEEEeCCCcccceEEe-----eccccceeEEEEecCCCEEEEee
Q 024451 95 ADVLSVSISGSNSRMF------------VSGSCDSTARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~------------~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
..+.+++|+|. ++++ ++|+.|++|++||.... +.+..+ .+|...+.+..+ ++..+++++
T Consensus 227 ~~v~~vafSpd-G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS 302 (356)
T 2w18_A 227 ASVCHKAYSEM-GLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAIL 302 (356)
T ss_dssp CCCEEEEEEET-TEEEEEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEE
T ss_pred eeeEEEEECCC-CCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEcccc--CCCEEEEEc
Confidence 45667788864 4444 67889999999998743 333333 366555444443 478899999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
.|++|+|||+.+++.+..+..+.. ..+..++|+|+|++|++|+.|+.|+|||.
T Consensus 303 ~DgTIkIWDl~tGk~l~tL~gH~~----~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALLPPVSD----QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEETTTCSEEEEECCC------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEecCCCC----CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999988776532211 23456899999999999999999999984
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=8.3e-24 Score=176.92 Aligned_cols=225 Identities=15% Similarity=0.115 Sum_probs=169.3
Q ss_pred CCeEEEccCC------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC---eEEEEeCCCC
Q 024451 9 GQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ---TCVLWDITTG 79 (267)
Q Consensus 9 g~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~ 79 (267)
+..++.++.+ ++|++||+... ..+.+.+|...|.+++|+|++ ++|++++.|+ .|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCC
Confidence 6667666654 79999998531 235567899999999999976 4788888875 9999999988
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
...... .|...+.+++|+|.+..++++++.++. |++||++.. ....+..|...+.++.|+|+|+.|+.++
T Consensus 214 ~~~~l~------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 214 AVRQVA------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp CEEEEE------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEee------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC--CEEeCcCCCCcccceEECCCCCEEEEEE
Confidence 665432 356678899999765545547766654 999998743 3456677888899999999999998887
Q ss_pred C-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCcc
Q 024451 158 D-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 158 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
. ++ .|.+||+.+++... +. .....+.+++|+|+|++|++++.+ ..|++||+.+++... + ..+.
T Consensus 286 ~~~g~~~i~~~d~~~~~~~~-l~-----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l----~~~~ 354 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQR-IT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----SSTF 354 (415)
T ss_dssp CTTSSCEEEEEETTSSCCEE-CC-----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C----CCSS
T ss_pred CCCCCcEEEEEECCCCCEEE-Ee-----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e----cCCC
Confidence 6 45 67777988765322 11 122367899999999999988764 589999988765432 2 2233
Q ss_pred ceEEEEEECCCCCeEEEeECCC---cEEEEecCc
Q 024451 232 GRITCLGLSADGSALCTGSWDT---NLKIWAFGG 262 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg---~i~~w~~~~ 262 (267)
.+.+++|+|+|++|++++.|+ .|.+|++.+
T Consensus 355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 789999999999999988877 799998755
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=5.7e-23 Score=177.18 Aligned_cols=250 Identities=11% Similarity=0.044 Sum_probs=177.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec----CCCeeEEEee-CCCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP----DEDTHLITSS-GDQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~-~d~~v~iwd~ 76 (267)
.++|+|+|++|++++.|++|++||+...+ ..+...+. +...+..++|+| ++. ++++++ .+++|.+||.
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t-----~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKE-----PTKVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSS-----CEEEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEET
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCC-----CcEEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEec
Confidence 36799999999999999999999983111 12344444 334578999999 875 566666 5899999999
Q ss_pred CCCeeEEEeCCccc-----cCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC
Q 024451 77 TTGLRTSVFGGEFQ-----SGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150 (267)
Q Consensus 77 ~~~~~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 150 (267)
.+.+.+..+..... ..| ...+..+.+++.+..++++...++.|.+||.............+...+..+.|+|++
T Consensus 256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg 335 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH 335 (543)
T ss_dssp TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTS
T ss_pred cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCC
Confidence 99877666542110 002 336788999987778888899999999999875332221122355668899999999
Q ss_pred CEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEE-eCCeEEEEeCCc-------ccee
Q 024451 151 NRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGY-SNGDCYVWDTLL-------AKVV 220 (267)
Q Consensus 151 ~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~-~dg~i~i~d~~~-------~~~~ 220 (267)
++++++ ..+++|.+||+++++....+... ...+......+ ++|+ +..++++. .|+.|.+||..+ .+.+
T Consensus 336 ~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKDRRLSALVDVG-KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred CEEEEEecCCCeEEEEECCCCeEEEeeccC-CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence 987655 46899999999998876654321 11111112222 4677 55666665 579999999877 5555
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeE-------CCCcEEEEecCceE
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGS-------WDTNLKIWAFGGYR 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-------~dg~i~~w~~~~~~ 264 (267)
..+ ..|...+..++++|+|++|++++ .+++|.+||...+.
T Consensus 414 ~~l----~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 414 AEL----QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp EEE----ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EEE----EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 444 34666778899999999999987 27899999987543
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.6e-22 Score=164.03 Aligned_cols=245 Identities=11% Similarity=0.081 Sum_probs=160.0
Q ss_pred ceeeCCCCCeEEEccCC-CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-
Q 024451 2 TCAFSPTGQSVACGGLD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG- 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d-~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~- 79 (267)
.++|+|+|++|++++.+ +.+.+|++.... +.......+..+. .+..++|+|++..+++++..++.|.+||+..+
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 117 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 117 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCC---CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc
Confidence 57899999988888876 999999986321 1122223333333 67889999987544445556899999999433
Q ss_pred --eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE----Eeec-cccceeEEEEecCCCE
Q 024451 80 --LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR----TFHG-HEGDVNTVKFFPDGNR 152 (267)
Q Consensus 80 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~ 152 (267)
.....+. ....+..+++++....++++...++.|++||+....+... .... ....+..++|+|++++
T Consensus 118 ~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 118 PVGVVDVVE------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp EEEEEEEEC------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred ccccccccc------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 2222221 2234777889876555555554899999999874232221 2222 2346788999999997
Q ss_pred EEEe-eCCCcEEEEeCCC--Ceee--EEEEeec-CCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc----cceee
Q 024451 153 FGTG-SDDGTCRLFDIRT--GHQL--QVYYQQH-GENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL----AKVVL 221 (267)
Q Consensus 153 l~~~-~~d~~i~iwd~~~--~~~~--~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~----~~~~~ 221 (267)
++++ ..++.|.+||++. ++.. ....... .......+..++|+|++++++++. .++.|++||+.. .+.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 7555 4889999999954 3221 1111100 111123567899999999887554 789999999872 22222
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~ 261 (267)
.. ..+. .+..++|+|+|++|++++ .|+.+.+|+++
T Consensus 272 ~~----~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 272 FQ----PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EE----ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ee----cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 11 1222 377899999999888877 58999999653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=5.6e-22 Score=165.81 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=157.8
Q ss_pred ceeeCCCCCeEEEccCCC---eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451 2 TCAFSPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~---~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~ 76 (267)
+++|+|+|+.|++++.|+ .|++||+.... ...+..|...+.+++|+|++..++++++.|+. |++||+
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 578999999999999886 99999986421 23456788899999999987654447776654 999999
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
.++..... ..|...+.++.|+|.+ +.++.++. ++ .|.+||+... ....+..+...+.+++|+|+|+++
T Consensus 255 ~~~~~~~l------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 255 ASGQIRQV------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp TTCCEEEC------CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEE
T ss_pred CCCCEEeC------cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCC--CEEEEecCCCcccCeEECCCCCEE
Confidence 88764322 2466778899999754 55555554 55 5777787643 234455566778899999999999
Q ss_pred EEeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeeccccc
Q 024451 154 GTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 154 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~ 227 (267)
+.++.+ ..|.+||+.+++... +. . . ..+.+++|+|+|+.|+.++.++ .|++||+.... ...+
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~~~~-l~-~----~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l---- 393 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGGVQV-LS-S----T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARL---- 393 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCCEEE-CC-C----S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEEC----
T ss_pred EEEECcCCceEEEEEECCCCCEEE-ec-C----C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEe----
Confidence 988764 589999998876532 11 1 1 1578999999999999988776 89999986433 2222
Q ss_pred CCccceEEEEEECCCC
Q 024451 228 NSHEGRITCLGLSADG 243 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~ 243 (267)
..|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 4688899999999964
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.4e-22 Score=160.66 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=160.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCC-CCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEee--CCCeEEEEe--
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNS-PTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSS--GDQTCVLWD-- 75 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd-- 75 (267)
+++|+|+|++|++++ ++.|.+||+.. .. ......+| ...+.+++|+|++ .+|++++ .++..+||.
T Consensus 46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEE
T ss_pred eeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEE
Confidence 578999999999987 78999999865 22 22333444 4678899999976 4677777 334555554
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
..++... .+. +...+..+.|++.+..+++++..++.+++|++.........+..+...+.++.|+|++++++.
T Consensus 117 ~~~~~~~-~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 117 STGGTPR-LMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp TTCCCCE-ECC------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEE
T ss_pred CCCCceE-Eee------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEE
Confidence 4444322 221 222377888987655555588889999999865433445566677788999999999998877
Q ss_pred ee-CCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----------CeEEEEeCCccceeee
Q 024451 156 GS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----------GDCYVWDTLLAKVVLN 222 (267)
Q Consensus 156 ~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----------g~i~i~d~~~~~~~~~ 222 (267)
++ .|+.+++|+++ .+.....+. .....+..++|+|++++|++++.+ +.|++||+...+....
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT-----DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC-----CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred EecCCCCccEEEECCCCCCcEEEe-----cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 66 58999999986 333332221 122457889999999999888765 5699999876554221
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
. .. ..|...+.+++|+|++++|++++.|.
T Consensus 265 ~-~~-~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 265 F-DL-FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp E-EE-EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred e-cc-CCCCcccccceECCCCCEEEEEEecc
Confidence 1 11 24667788999999999999887764
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=8.2e-23 Score=171.69 Aligned_cols=210 Identities=14% Similarity=0.055 Sum_probs=148.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCC---C-CCCCcc----cccccCCeeeEEEEEEecCCCeeEE----EeeCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTD---K-DGNLPV----SRMLSGHKGYVSCCQYVPDEDTHLI----TSSGDQ 69 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~---~-~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~----s~~~d~ 69 (267)
.+++++++.++++++.|+ +++|+...-.. . ...... ......|...|.+++|+|++ .+|+ +++.|+
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~ 118 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMSSEYGS 118 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEETTTEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEeccCCCc
Confidence 367899999999999998 89987532100 0 000000 00112356789999999986 4677 899999
Q ss_pred eEEEEeCCCC--------eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451 70 TCVLWDITTG--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 141 (267)
Q Consensus 70 ~v~iwd~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i 141 (267)
+|++||+.+. .....+ ....+|...|.+++|+|....++++++.||.|++||++.. .......+|...|
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~~v 195 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYH--KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPSTVAV 195 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEE--ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGGGCE
T ss_pred eEEEEEccccccCCcCCcceeeee--eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCCCce
Confidence 9999998653 111111 1234688999999999876788999999999999999854 3344456788899
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEEE-eCC------eEEEE
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGY-SNG------DCYVW 212 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~-~dg------~i~i~ 212 (267)
.+++|+|+|++|++|+.|++|++||++ ++....+...... .+...+.+++|++++.++++.. .+| .+++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 4443333221111 1123689999999888776543 333 38999
Q ss_pred eCCcc
Q 024451 213 DTLLA 217 (267)
Q Consensus 213 d~~~~ 217 (267)
++...
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 98654
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=9e-22 Score=159.25 Aligned_cols=243 Identities=13% Similarity=0.132 Sum_probs=164.1
Q ss_pred ceeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-C--eEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-Q--TCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~--~v~iwd~~ 77 (267)
.++|+|+|++++.++. ++.|.+||..... . ....+..+..+..+++|+|++. +++++..+ + .|.+||+.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-----~-~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEP-----P-KVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSS-----C-EEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETT
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCc-----e-eEEecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECC
Confidence 4689999986655554 8999999986532 1 1344555666666689999764 56655555 3 89999999
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-EEEEeCCCcccce---EEeeccccceeEEEEecCCCEE
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-ARLWDTRVASRAV---RTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l 153 (267)
++.....+. .......++++|.+..++++...++. +.+|++....... ............++|+|+++++
T Consensus 117 ~~~~~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 117 KNKFISTIP------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp TTEEEEEEE------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred CCCeEEEEE------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence 887665543 22345789999866567777777778 9999986432211 1112334557899999999965
Q ss_pred E-EeeCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce--eeecccc
Q 024451 154 G-TGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV--VLNLGSL 226 (267)
Q Consensus 154 ~-~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~--~~~~~~~ 226 (267)
+ ++..++.|.+||+++++. +..+.. ...+..++|+|++++++++. .++.|.+||..+++. +.....-
T Consensus 191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 191 FVANLIGNSIGILETQNPENITLLNAVGT------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp EEEETTTTEEEEEECSSTTSCEEEEEEEC------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEeCCCCeEEEEECCCCcccceeeeccC------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence 4 455789999999998776 433321 12457889999999776665 477899999887665 2111100
Q ss_pred ---cCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecCce
Q 024451 227 ---QNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFGGY 263 (267)
Q Consensus 227 ---~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~~ 263 (267)
..........++|+|+|++|+.++. ++.|.+|++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 0111112256899999998866554 669999998653
No 134
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=4.1e-21 Score=157.47 Aligned_cols=251 Identities=11% Similarity=0.051 Sum_probs=160.0
Q ss_pred ceeeCCCCCeEEEccCC----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEe-eCCCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLD----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d~~v~iwd~ 76 (267)
.++|+|+|++|++++.+ +.+.+|++.... +..........+......+++ ++. +|+++ ..++.|.+|++
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~---g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK---GTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPI 127 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTT---TEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEB
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC---CcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEe
Confidence 36899999999998886 799999986531 112222223334444555666 444 45554 46899999999
Q ss_pred CCCeeEEEe------CCcc---ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc------c------eEEee
Q 024451 77 TTGLRTSVF------GGEF---QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------A------VRTFH 135 (267)
Q Consensus 77 ~~~~~~~~~------~~~~---~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------~------~~~~~ 135 (267)
......... .+.. ...+...+.+++++|....++++...++.|++|++..... . .....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 753221111 0000 0112334578899976555666666788999998764331 1 11122
Q ss_pred ccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC--CeEEEE
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVW 212 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~i~ 212 (267)
.+......++|+|+|+++++++ .++.|.+||+++++...................++|+|+|++|+++..+ +.|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 3345578999999999887776 6899999999876542222111112222346899999999999776654 899999
Q ss_pred eCC--ccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451 213 DTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 213 d~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~ 261 (267)
++. .++.. ....... ...+..++|+|+|++|++++ .++.|.+|.++
T Consensus 288 ~~~~~~g~~~-~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLT-KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEE-EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEE-EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 975 22211 1111111 34567899999999998887 57899998664
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.6e-21 Score=156.88 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=159.2
Q ss_pred ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~v~iwd~~ 77 (267)
.++|+|+|+ |++++. ++.|.+|++.... ......+..+...+..++|+|++. +|++++ .++.|++|++.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEEC
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeC
Confidence 478999999 555443 6899999985321 122233344666778899999875 566665 78999999996
Q ss_pred C-Cee--EEEeCCccc----cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeecc-ccceeEEEEe
Q 024451 78 T-GLR--TSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGH-EGDVNTVKFF 147 (267)
Q Consensus 78 ~-~~~--~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~i~~~~~~ 147 (267)
. +.. ...+..... ......+..++++|... ++++...++.|++|++...... ...+..+ ......++|+
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 3 221 111110000 01223477899997554 7777778899999998732221 1112222 2357789999
Q ss_pred cCCCEEEE-eeCCCcEEEEeCCC--CeeeEEEEeecCCC---CCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCcccee
Q 024451 148 PDGNRFGT-GSDDGTCRLFDIRT--GHQLQVYYQQHGEN---EIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 148 ~~~~~l~~-~~~d~~i~iwd~~~--~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~~~~~ 220 (267)
|+|+++++ ...++.+.+|+++. ++............ ....+..++|+|+|++|++ ...++.|.+||+......
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~ 275 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL 275 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE
Confidence 99996655 56788999999874 43221111111110 1134788999999998855 455899999998633211
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeECC-CcEEEEec
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAF 260 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~i~~w~~ 260 (267)
.....+ ..+...+..++|+|+|++|++++.+ +.|.+|++
T Consensus 276 ~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 276 TLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 111111 2344557889999999999888765 89999965
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=9.2e-21 Score=154.40 Aligned_cols=247 Identities=11% Similarity=0.076 Sum_probs=173.4
Q ss_pred ceeeCCCCCeEEEccC-------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE
Q 024451 2 TCAFSPTGQSVACGGL-------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 74 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~-------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw 74 (267)
.++|+|+|+.+++++. ++.|.+||..... ....+.. ...+..+.|+|++..++++...++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 4679999988888774 5789999976421 2222221 23356788999876666677778999999
Q ss_pred eCCCCeeEEEeCCcccc----CCccceEEEEEeCCCCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451 75 DITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 75 d~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
|..++.....+...... .....+..+.+++.+..++++. +.++.|.+||.+.. +....+..+...+..+.|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCC
Confidence 99988766555321100 0011267788998666666555 45889999998743 345555445556889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccC
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~ 228 (267)
+++++++..++.|.+||+.+++....+.. ........+..++|+|+++.++++.. ++.|++||..+++.......
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--- 271 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKL-LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--- 271 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEEC-CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC---
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEc-CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc---
Confidence 99999999999999999998876654432 11122345788999999998877765 49999999988776554421
Q ss_pred CccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceE
Q 024451 229 SHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYR 264 (267)
Q Consensus 229 ~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~ 264 (267)
.. + ..++|+|+|++++.++ .++.|.+|+.....
T Consensus 272 -~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 272 -PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp -SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 11 1 4689999999665555 69999999985443
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.4e-21 Score=167.11 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=168.3
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC--CCCe
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGL 80 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~--~~~~ 80 (267)
+|+|++..+++++.|++|.+||.... .+...+. +|. +++++|+|++ ++|++++.|++|++||+ .++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~-------~~~~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK-------KIVKVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC-------CEEEEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc-------eEEEEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCc
Confidence 47899999999999999999997642 2444555 444 8899999976 58999999999999999 7776
Q ss_pred eEEEeCCccccCCccceEEEEEeC----CCCeEEEEec-CCCeEEEEeCCCcccceEEeec----------c-ccceeEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGS-CDSTARLWDTRVASRAVRTFHG----------H-EGDVNTV 144 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~----------~-~~~i~~~ 144 (267)
....+. +...+..+++++ .+ +++++++ .+++|.+||.... +.+..+.. | ...+..+
T Consensus 214 ~~~~i~------~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 214 KVAEIK------IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp EEEEEE------CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred EEEEEe------cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCCceEEE
Confidence 555442 234568899986 54 4455554 6899999998643 34444433 2 2368899
Q ss_pred EEecCCCE-EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeee
Q 024451 145 KFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 145 ~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~ 222 (267)
.++|+++. +++...+++|.+||..+.+.+....... ...+..+.|+|++++++++. .++.|.+||..+++....
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 99997665 5666789999999998765543211111 12467889999999877655 589999999998877655
Q ss_pred cccccCCccceEEEEEECCC-CCeEEEeE-CCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSAD-GSALCTGS-WDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~-~~~l~sgs-~dg~i~~w~~~~ 262 (267)
+..-...|.+....+ ++|+ +..+++++ .|++|++|+...
T Consensus 362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 432223465443333 4676 67777775 589999999754
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.6e-21 Score=154.55 Aligned_cols=224 Identities=14% Similarity=0.153 Sum_probs=155.2
Q ss_pred EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccC
Q 024451 14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSG 92 (267)
Q Consensus 14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~ 92 (267)
+++.|++|++||+... ....+..|...|.+++|+|++. +|++++ ++.|++||+.+ +....... ..
T Consensus 17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~----~~ 82 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDT----GF 82 (297)
T ss_dssp -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCC----TT
T ss_pred CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEecc----cc
Confidence 4578999999998642 1234556888999999999764 677765 88999999998 65544332 11
Q ss_pred CccceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEEeCCC
Q 024451 93 HTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRT 169 (267)
Q Consensus 93 ~~~~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~ 169 (267)
+...+.++.|++. ++.+++++ .++..++|.+.........+..+ ..+..+.|+|++++++ ++..|+.+++|+++.
T Consensus 83 ~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 83 ATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 2356778889875 55666766 33456666543222334444433 3488999999999887 778899999999643
Q ss_pred C-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeE
Q 024451 170 G-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 170 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
. .....+ ......+.+++|+|+++.++.++ .++.+++|++.. ......+ ..|...+.+++|+|+|++|
T Consensus 161 ~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 161 DSGVETRL-----THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI----TDSAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp TTCCEEEC-----CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC----CCCSEEEEEEEECTTSSEE
T ss_pred CCCcceEc-----ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE----ecCCcccCCeEECCCCCEE
Confidence 2 222211 12234689999999999888766 488899998652 2233222 3466789999999999999
Q ss_pred EEeECC-----------CcEEEEecCc
Q 024451 247 CTGSWD-----------TNLKIWAFGG 262 (267)
Q Consensus 247 ~sgs~d-----------g~i~~w~~~~ 262 (267)
+.++.+ +.|.+|++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEcCCCCCcccccCceEEEEEecCC
Confidence 988876 5699998754
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=4.9e-22 Score=177.56 Aligned_cols=238 Identities=11% Similarity=0.048 Sum_probs=165.2
Q ss_pred ceeeCCCCCeEEEccC-CC-----eEEEeecCCCCCCCCCCcccccccCC--e----------------------eeEEE
Q 024451 2 TCAFSPTGQSVACGGL-DS-----VCSIFNLNSPTDKDGNLPVSRMLSGH--K----------------------GYVSC 51 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~-d~-----~v~~w~~~~~~~~~~~~~~~~~~~~h--~----------------------~~v~~ 51 (267)
+++|+|||++|++++. |+ +|.+||+.... ..+.+..| . ..|.+
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------EEEEECGGGTC--------------------CCEESCC
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 4789999999999998 88 99999986532 11222222 1 34788
Q ss_pred EEEecCCCeeEEEeeCCCeEEEEeCCCC---eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451 52 CQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 128 (267)
++|+|++. +|++++. +.|++||+.++ .... + ..+...+..+.|+|. ++.++.++ ++.|++||+...
T Consensus 114 ~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~-l-----~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~g- 182 (741)
T 2ecf_A 114 YQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQ-L-----THGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLASG- 182 (741)
T ss_dssp CEECTTSS-EEEEEET-TEEEEEESSSCSTTSCCB-C-----CCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTTT-
T ss_pred eEECCCCC-EEEEEeC-CcEEEEECCCCCcceEEE-c-----ccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCCC-
Confidence 99999864 6777665 99999999877 3322 1 245667889999975 55666665 568999998643
Q ss_pred cceEEeeccccc----------------eeEEEEecCCCEEEEeeCCC--------------------------------
Q 024451 129 RAVRTFHGHEGD----------------VNTVKFFPDGNRFGTGSDDG-------------------------------- 160 (267)
Q Consensus 129 ~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~-------------------------------- 160 (267)
........+... +..+.|+|+|++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 222222222221 47899999999999988765
Q ss_pred -cEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-----CCeEEEEeCCccceeeecccccCCccce
Q 024451 161 -TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-----NGDCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 161 -~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
.|.+||+.+ ++....... ..+...+..++| |+|+.|+.+.. +..|++||..+++...............
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 788999987 664332111 123346889999 99999988765 5689999988766543221110011113
Q ss_pred EEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 234 ITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+..++|+|||+++++++.||.++||.+.
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEc
Confidence 4578999999999999999998998754
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=3.6e-22 Score=167.77 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=145.1
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe----------eEEEeCCccccCCccceEEEEEeCCCCeEEE----Ee
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----------RTSVFGGEFQSGHTADVLSVSISGSNSRMFV----SG 113 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----s~ 113 (267)
.+..++++++. .++++++.|+ +++|+..... ............+...+.+++|++. +++++ ++
T Consensus 38 ~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~sg 114 (434)
T 2oit_A 38 RSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMSS 114 (434)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEET
T ss_pred CccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEecc
Confidence 45678888865 4788888887 8888753210 0111111111234567999999975 45666 88
Q ss_pred cCCCeEEEEeCCCc-----c--c---ceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451 114 SCDSTARLWDTRVA-----S--R---AVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182 (267)
Q Consensus 114 ~~d~~i~iwd~~~~-----~--~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 182 (267)
+.|+.|++||++.. . + ....+.+|...|.+++|+|+ +++|++++.|++|++||++++........
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~---- 190 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP---- 190 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC----
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC----
Confidence 99999999997532 1 1 13456679999999999997 88999999999999999998754332221
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccCCccceEEEEEECCCCCeEEE-eECCCc----
Q 024451 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQNSHEGRITCLGLSADGSALCT-GSWDTN---- 254 (267)
Q Consensus 183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~s-gs~dg~---- 254 (267)
+...+.+++|+|+|++|++|+.||.|++||.+ .+....+.. ....|...|.+++|++++.++++ .+.||.
T Consensus 191 -~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 191 -STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp -GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred -CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 23469999999999999999999999999987 332222211 11134558999999999888865 334443
Q ss_pred --EEEEecCc
Q 024451 255 --LKIWAFGG 262 (267)
Q Consensus 255 --i~~w~~~~ 262 (267)
+++|++..
T Consensus 269 ~~v~i~~l~~ 278 (434)
T 2oit_A 269 PDVVMALLPK 278 (434)
T ss_dssp CEEEEEECCC
T ss_pred CceEEEEecc
Confidence 88998753
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3.9e-21 Score=155.47 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=162.3
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCee-eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
+++++++.+++|.+||..... ....+. ++.. .+..++|+|++..++++++.++.|.+||+.++.....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA-------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE-------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCc-------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 478999999999999986421 222222 2322 3677899998766667777889999999998876654432
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEec------------CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGS------------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
.....+...+..+.+++... .++++. .++.|.+||+.. .+....+.. ...+.++.|+|+++++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 151 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYG 151 (337)
T ss_dssp CBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred CCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEE
Confidence 11000122456788886544 445553 579999999864 334444443 456788999999998887
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCC----------------------------------------------------
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGEN---------------------------------------------------- 183 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------------------------- 183 (267)
+ ++.|.+||+.+++....+.......
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 7 6899999998876554332111000
Q ss_pred ---------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451 184 ---------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 184 ---------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
....+..++|+|++++++++ ++.|++||....+....+. ....+.+++|+|+|++|++++.|+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~ 302 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----LPHSYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECTTSCEEEEESBSSE
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----CCCceeeEEECCCCCEEEEEcCCCc
Confidence 00124468999999999888 7999999998776654432 2235678999999999999999999
Q ss_pred EEEEecCce
Q 024451 255 LKIWAFGGY 263 (267)
Q Consensus 255 i~~w~~~~~ 263 (267)
|.+|++...
T Consensus 303 i~v~d~~~~ 311 (337)
T 1pby_B 303 LAAYDAETL 311 (337)
T ss_dssp EEEEETTTC
T ss_pred EEEEECcCC
Confidence 999998544
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=5.3e-22 Score=172.81 Aligned_cols=227 Identities=10% Similarity=0.042 Sum_probs=157.0
Q ss_pred ceeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeC---CCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSG---DQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~ 76 (267)
+++|+|||+.|++++. ||+++||++... ..+.+..|. ..+..+.|+|+ +++++++. +...++|.+
T Consensus 26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETT--------EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred eeecCCCCCeEEEEEccCCceeEEEEcCC--------CcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 5789999999999887 999999997431 123334444 68999999986 67777765 555666654
Q ss_pred CC---CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 77 TT---GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 77 ~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
.. +... .+. .... ....++++....++++.+.++.+.+||+... + ...+..+.. .++.|+|+|+.+
T Consensus 96 ~~~~~g~~~-~l~----~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~-~~~l~~~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 96 NTSRPGEEQ-RLE----AVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGG-G-LRELARLPG--FGFVSDIRGDLI 164 (582)
T ss_dssp ETTSTTCCE-ECT----TSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETT-E-EEEEEEESS--CEEEEEEETTEE
T ss_pred eccCCCccc-ccc----CCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCC-c-EEEeecCCC--ceEEECCCCCEE
Confidence 33 2222 211 1112 2234566555554444444555569998643 2 233333333 889999999999
Q ss_pred EEeeCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC--eEEEEeCCccceeeeccccc
Q 024451 154 GTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 154 ~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~ 227 (267)
++++.| ..|.+||+.+++.. .+. .+...+..++|||||+.|+++..++ .|++||...++.. ..
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~---- 233 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR-VFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL---- 233 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE-EEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC----
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce-Eee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec----
Confidence 988877 78999999887653 221 1224578999999999999887888 8999998876654 22
Q ss_pred CCccceEEEEE--------ECCCCCeEEEeECCCcEEEEec
Q 024451 228 NSHEGRITCLG--------LSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 228 ~~~~~~v~~~~--------~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..|...+..++ |+|||.++++++.|+.+++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 34555555555 9999999999999999999998
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=9.4e-21 Score=154.04 Aligned_cols=244 Identities=13% Similarity=0.062 Sum_probs=165.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++++++++++++++.+++|.+||..... ....+..+. ..+..++|+|++...+++...++.|.+||+.++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 35688999999999999999999986421 223333222 2466789999876556677788999999999887
Q ss_pred eEEEeCCccc-cCCccceEEEEEeCCCCeEEEEecCC------------CeEEEEeCCCcc--cceEEeeccccceeEEE
Q 024451 81 RTSVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCD------------STARLWDTRVAS--RAVRTFHGHEGDVNTVK 145 (267)
Q Consensus 81 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d------------~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~ 145 (267)
....+..... ......+..+.+++. ++.+++++.+ +.|.+||+.... ..+..+. +...+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccccee
Confidence 6554431100 000223567888865 4555666544 899999986422 1223333 334688999
Q ss_pred EecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC------------------------------------------
Q 024451 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN------------------------------------------ 183 (267)
Q Consensus 146 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------------------ 183 (267)
|+|+++ +++++. .|.+||+.+++....+.......
T Consensus 155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 555443 49999998877654432111000
Q ss_pred ---------------------CCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 184 ---------------------EIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 184 ---------------------~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
....+..++|+| ++++++++ ++.|++||+.+.+....+. ....+.+++|+|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~s~ 304 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----LDHTYYCVAFDK 304 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----CSSCCCEEEECS
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----CCCCccceEECC
Confidence 001345677889 99999888 8899999998876654432 123467899999
Q ss_pred CCCeEEEeECCCcEEEEecCceE
Q 024451 242 DGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+|++|++++.++.|++|+.....
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCEEEEecCCCeEEEEeccccc
Confidence 99999888889999999986543
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.9e-20 Score=150.68 Aligned_cols=240 Identities=14% Similarity=0.173 Sum_probs=156.0
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-CeEEEEeCC--CCeeEEEeC
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDIT--TGLRTSVFG 86 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~v~iwd~~--~~~~~~~~~ 86 (267)
..+++++.|+.|++|++... +....... ..|...+.+++|+|++. +|++++.+ +.|++|++. ++.......
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHE----GALTLTQV-VDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTT----SCEEEEEE-EECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCC----CcEEEeee-EecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 34555588999999998531 11112222 34666788899999764 56666665 999999997 444222111
Q ss_pred CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee-CCCcEE
Q 024451 87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCR 163 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~ 163 (267)
. ..+ ..+..+++++....+++++..++.|.+||+... ......+.. ...+.+++|+|+++++++++ .|+.|.
T Consensus 80 --~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 80 --S-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp --E-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred --c-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEE
Confidence 0 112 267788898765555566666899999998411 122333333 34588999999999888777 899999
Q ss_pred EEeCCC-CeeeEEEE-eecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc--cce--eeecccccCCc--cceE
Q 024451 164 LFDIRT-GHQLQVYY-QQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL--AKV--VLNLGSLQNSH--EGRI 234 (267)
Q Consensus 164 iwd~~~-~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~--~~~--~~~~~~~~~~~--~~~v 234 (267)
+||+.+ ++...... ... ......+..++|+|++++++++. .++.+.+||+.. ++. ..........+ ...+
T Consensus 155 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 233 (343)
T ss_dssp EEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred EEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence 999987 54322110 111 11123578899999999776655 789999999853 221 11111111111 2356
Q ss_pred EEEEECCCCCeEE-EeECCCcEEEEecC
Q 024451 235 TCLGLSADGSALC-TGSWDTNLKIWAFG 261 (267)
Q Consensus 235 ~~~~~~p~~~~l~-sgs~dg~i~~w~~~ 261 (267)
..++|+|+|++|+ ++..|+.|.+|++.
T Consensus 234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 234 ADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 7899999999887 45579999999986
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=5.3e-20 Score=148.80 Aligned_cols=237 Identities=14% Similarity=0.094 Sum_probs=155.8
Q ss_pred eeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-
Q 024451 4 AFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR- 81 (267)
Q Consensus 4 ~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~- 81 (267)
.|.+++ ..+++.+.+++|++||..... ....+..+...+ +++|+|++..+++++..++.|.+||..++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE-------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC-------EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc-------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 466555 558888899999999986422 333334445556 8999998764455555589999999988764
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-C--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-Eee
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-S--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGS 157 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~ 157 (267)
...+. .+......+++++.. ++++++..+ + .|.+||+... +....+.. .....+++|+|+|++++ +..
T Consensus 76 ~~~~~-----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 76 VVAIQ-----EGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEEE-----ECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred EEecc-----cCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCC-CeEEEEEC-CCCccceEECCCCCEEEEEec
Confidence 33331 233333337888654 455555554 3 8999998743 34444443 34568999999998555 445
Q ss_pred CCCc-EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce---eeecccccCCccc
Q 024451 158 DDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV---VLNLGSLQNSHEG 232 (267)
Q Consensus 158 ~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~ 232 (267)
.++. +.+|++.....+....... ......+..++|+|++++++++. .++.|++||+..++. +..+. ...
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----~~~ 221 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----TNN 221 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----CSS
T ss_pred CCCceEEEEEECCCCcEeecCCcc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----CCC
Confidence 6688 9999987644332111110 01123478999999999765554 689999999987776 43321 234
Q ss_pred eEEEEEECCCCCeEEEeE-CCCcEEEEecCc
Q 024451 233 RITCLGLSADGSALCTGS-WDTNLKIWAFGG 262 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~ 262 (267)
.+..++|+|+|++|+.++ .++.|.+|+...
T Consensus 222 ~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 222 LPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp CCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 567899999999776544 578899999754
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.8e-21 Score=173.33 Aligned_cols=240 Identities=11% Similarity=0.051 Sum_probs=159.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeCC---------C
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGD---------Q 69 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d---------~ 69 (267)
+++|+|||+++++ +.||+|++||+.... ....+.+|.. .|.+++|+|++ ++|++++.+ +
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~-------~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNT-------STVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCC-------CEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCc-------EEEEeccccccccccceEEECCCC-CEEEEEecCccceeeccee
Confidence 5789999997776 789999999986532 2334445554 48899999986 467777664 7
Q ss_pred eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc---------
Q 024451 70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD--------- 140 (267)
Q Consensus 70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------- 140 (267)
.+.+||+.++.... +. ...+|...+..++|+|. ++.++.++. +.|++||+... ........+...
T Consensus 92 ~i~~~d~~~~~~~~-l~--~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 92 YYVLSKIPHGDPQS-LD--PPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp EEEEEESSSCCCEE-CC--CTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTTEEEEECCH
T ss_pred eEEEEECCCCceEe-cc--CCccccccccccEECCC-CCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCceECcccce
Confidence 88899999876422 21 11245555778889875 455666654 79999998743 233333333322
Q ss_pred ---------eeEEEEecCCCEEEEeeCCC----------------------------------cEEEEeCCCCeeeEEEE
Q 024451 141 ---------VNTVKFFPDGNRFGTGSDDG----------------------------------TCRLFDIRTGHQLQVYY 177 (267)
Q Consensus 141 ---------i~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~~~~~ 177 (267)
+.++.|+|+|+.|+.++.|+ .|++||+.+++....+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 27899999999999887553 79999998776433221
Q ss_pred eec-CCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccceeeecccccCCccceE----EEEEECCCCCeEEE
Q 024451 178 QQH-GENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLNLGSLQNSHEGRI----TCLGLSADGSALCT 248 (267)
Q Consensus 178 ~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~l~s 248 (267)
... .......+..++|+|+|+++++.... ..|++||+.+++...... ..+.+.+ ..++|+|||+.|+.
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE---DESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE---EECSSCCCCCCCCCEECTTSCSEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE---eccCCEEeccCCCceEcCCCCeEEE
Confidence 110 00113468899999999988777543 589999987766443221 1122333 26899999998775
Q ss_pred --eECCC----c--EEEEe
Q 024451 249 --GSWDT----N--LKIWA 259 (267)
Q Consensus 249 --gs~dg----~--i~~w~ 259 (267)
+..|+ . |.+|+
T Consensus 323 ~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEECCSSSSCEEEEEEEC
T ss_pred EEecccCCCcceeEEEEEe
Confidence 45677 4 55555
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=6.5e-19 Score=143.44 Aligned_cols=225 Identities=14% Similarity=0.055 Sum_probs=156.9
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe---------eeEEEEEEecCCCeeEEEe-eCCCe
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK---------GYVSCCQYVPDEDTHLITS-SGDQT 70 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~-~~d~~ 70 (267)
.++|+|+|+ .+++...++.|.+||..... ....+..+. ..+.++.|+|++...+++. +.++.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 165 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGE-------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV 165 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCC-------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCe-------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence 468999998 55666678999999986422 222222222 1367899999876544444 35889
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec----cccceeEEEE
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HEGDVNTVKF 146 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~ 146 (267)
|.+||..++.....+. .+...+..+.+++.+ +.+++++.++.|.+||.... +....+.. +...+..++|
T Consensus 166 i~~~d~~~~~~~~~~~-----~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQ-----NTGKMSTGLALDSEG-KRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EEEEETTTTEEEEEEC-----CCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEE
T ss_pred EEEEcCCCCceEEEec-----CCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEE
Confidence 9999999887766553 123345677788654 45666677999999998753 33433332 4455778999
Q ss_pred ecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecc
Q 024451 147 FPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 147 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~ 224 (267)
+|++++++.++ .++.|.+||+.+++....+... ....++|+|+++.++++. .++.|.+||..+.+.+..+.
T Consensus 239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS-------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999776665 4599999999988766544321 124688999999766665 68999999998877665432
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECC
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
......+++|+|+|++|+.+..+
T Consensus 312 -----~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 312 -----TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -----CCSEEEEEEECTTSCEEEEEEEC
T ss_pred -----cCCCCCeEEEcCCCCEEEEEEcc
Confidence 23467899999999977766555
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=5.2e-20 Score=170.27 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=171.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC--C-CCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--G-NLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~--~-~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
..+|+|+|+.|+.+ .++.|.+|++....... . ..........|...+.+++|+ |++ ..|++++ ++.|.+|+..
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCC
Confidence 35799999999887 58999999973211000 0 000000111255578899999 976 4677666 8899999998
Q ss_pred CCeeEEEeCCccccCCcc-ceEEEEEeCCCCeEEEEecCCCeEE-EEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451 78 TGLRTSVFGGEFQSGHTA-DVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
++..... ..|.. .+..+.|+ +++.++.++.+..+. +|+.... ....+.+|...+..++|+|+|+++++
T Consensus 326 ~~~~~~~------~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~--~~~~l~~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 326 GTYVLKV------PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp SSBEEEC------SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred CCceEEc------cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC--CceEecCCccceeeeEECCCCCEEEE
Confidence 7654332 23455 77888887 556677777777888 8897642 23444477788999999999999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----------eEEEEeCCccceeeeccc
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------DCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----------~i~i~d~~~~~~~~~~~~ 225 (267)
++.++.|++||+.+++....... +...+..++|+|+|++|++++.++ .|++||+..++ ...+
T Consensus 396 ~~~~~~v~~~d~~tg~~~~~~~~-----~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l-- 467 (1045)
T 1k32_A 396 ANDRFEIMTVDLETGKPTVIERS-----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA-- 467 (1045)
T ss_dssp EETTSEEEEEETTTCCEEEEEEC-----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC--
T ss_pred ECCCCeEEEEECCCCceEEeccC-----CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe--
Confidence 99999999999998876544322 223568899999999998887754 99999988765 3222
Q ss_pred ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..|...+..++|+|||++|+.++.++..++|+.
T Consensus 468 --~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 468 --TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp --SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred --eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 346677889999999999999999888888864
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=7.4e-20 Score=163.46 Aligned_cols=237 Identities=11% Similarity=0.109 Sum_probs=162.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|||++|++++. ++|.+||+..... +....+..|...+.+++|+|++. +|+.++ ++.|++||+.++..
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEETTTTEE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEecCCCCE
Confidence 4689999999999886 8999999865310 02234567778899999999864 677766 56999999998765
Q ss_pred EEEeCCccccCCcc----------------ceEEEEEeCCCCeEEEEecCCC----------------------------
Q 024451 82 TSVFGGEFQSGHTA----------------DVLSVSISGSNSRMFVSGSCDS---------------------------- 117 (267)
Q Consensus 82 ~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~s~~~d~---------------------------- 117 (267)
..... .+.. .+..+.|+|. ++.+++++.|+
T Consensus 185 ~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 185 MQLTA-----DGSTTIGNGIAEFVADEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp EECCC-----CCCSSEEESCCCHHHHHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred EEecc-----CCccceeccccceeeeeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 44322 1111 1366889875 45566665554
Q ss_pred -----eEEEEeCCC-cccceEEee--ccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451 118 -----TARLWDTRV-ASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 118 -----~i~iwd~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
.|.+||+.. .. ...... .|...+..++| |+|+.|+.++. +..|.+||+.+++....+.... ...
T Consensus 259 ~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~ 335 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTW 335 (741)
T ss_dssp CCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSC
T ss_pred CCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCc
Confidence 788889864 33 222222 46678999999 99999987653 5689999999887655443322 111
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEE-EECCCCCeEE-EeECCC--cEEEEe
Q 024451 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCL-GLSADGSALC-TGSWDT--NLKIWA 259 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~-sgs~dg--~i~~w~ 259 (267)
...+..++|+|+|++++++..+|..+||.... .+ ...+ ..|...+..+ .|+|+|+.|+ +++.|+ .++||+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l----~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL----THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES----CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee----eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 11245788999999888888888777776542 22 3222 3456677777 5999999775 455555 899997
Q ss_pred c
Q 024451 260 F 260 (267)
Q Consensus 260 ~ 260 (267)
+
T Consensus 411 ~ 411 (741)
T 2ecf_A 411 V 411 (741)
T ss_dssp E
T ss_pred E
Confidence 6
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=3e-19 Score=158.74 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=160.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee--------------eEEEEEEecCCCeeEEEee-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG--------------YVSCCQYVPDEDTHLITSS- 66 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~--------------~v~~~~~~~~~~~~l~s~~- 66 (267)
.++|+|||+.|+++ .|+.|.+|++....+..+. ..+....+.. .+.++.|+|++. +|++++
T Consensus 125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~ 200 (706)
T 2z3z_A 125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRM 200 (706)
T ss_dssp TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEE
T ss_pred CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEE
Confidence 47899999999995 7899999998751000000 1121222222 257899999864 677776
Q ss_pred --------------------------------CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec
Q 024451 67 --------------------------------GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 114 (267)
Q Consensus 67 --------------------------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~ 114 (267)
.+..|++||+.++....... ...|...+..+.|+|. ++.+++++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spd-g~~l~~~~ 276 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPD-ENILYVAE 276 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTT-SSEEEEEE
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc---CCCCceeEeeEEEECC-CCEEEEEE
Confidence 45679999999886544321 1246677889999975 55566665
Q ss_pred CCC-----eEEEEeCCCcccceEEee-cccc---ceeEEEEec--CCCEEEEeeCCCcEEEEeCC-CCeeeEEEEeecCC
Q 024451 115 CDS-----TARLWDTRVASRAVRTFH-GHEG---DVNTVKFFP--DGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGE 182 (267)
Q Consensus 115 ~d~-----~i~iwd~~~~~~~~~~~~-~~~~---~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~ 182 (267)
.++ .|++||+........... .+.. .+..+.|+| +|++++++..|+.+++|+++ +++....+.
T Consensus 277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~----- 351 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT----- 351 (706)
T ss_dssp ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-----
T ss_pred eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-----
Confidence 554 899999875422222221 1222 246789999 99999999999999999886 444333221
Q ss_pred CCCCcEEE-EEEccCCCEEEEEEeC-C----eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC----
Q 024451 183 NEIPHVTS-IAFSISGRLLFAGYSN-G----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---- 252 (267)
Q Consensus 183 ~~~~~v~~-~~~s~~~~~l~~g~~d-g----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d---- 252 (267)
.....+.. ++|+|+++.|+.++.+ + .|+.||...++. ..+ .|...+.+++|+|||++|+..+.+
T Consensus 352 ~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l-----~~~~~~~~~~~spdg~~l~~~~~~~~~p 425 (706)
T 2z3z_A 352 KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL-----TPESGMHRTQLSPDGSAIIDIFQSPTVP 425 (706)
T ss_dssp CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES-----CCSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec-----cCCCceEEEEECCCCCEEEEEecCCCCC
Confidence 12234655 7999999988666544 4 677777665442 122 255678899999999998876443
Q ss_pred CcEEEEecCce
Q 024451 253 TNLKIWAFGGY 263 (267)
Q Consensus 253 g~i~~w~~~~~ 263 (267)
+.+.+|++.+-
T Consensus 426 ~~i~l~d~~~~ 436 (706)
T 2z3z_A 426 RKVTVTNIGKG 436 (706)
T ss_dssp CEEEEEESSSC
T ss_pred cEEEEEECCCC
Confidence 46999987553
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=6.7e-20 Score=162.92 Aligned_cols=241 Identities=10% Similarity=0.066 Sum_probs=156.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC---
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--- 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--- 78 (267)
+++|+|+ +.++.+ .|+++.+||+.... ...+..+...+.+++|+|++. .|++ +.|+.|++||+.+
T Consensus 86 ~~~~spd-~~~~~~-~~~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~SpdG~-~la~-~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 86 RTLDAGR-GLVVLF-TQGGLVGFDMLARK--------VTYLFDTNEETASLDFSPVGD-RVAY-VRNHNLYIARGGKLGE 153 (706)
T ss_dssp EEEETTT-TEEEEE-ETTEEEEEETTTTE--------EEEEECCTTCCTTCEECTTSS-EEEE-EETTEEEEEECBCTTS
T ss_pred eEEECCC-CeEEEE-ECCEEEEEECCCCc--------eEEccCCcccccCCcCCCCCC-EEEE-EECCeEEEEecCcccc
Confidence 4689999 544444 45999999986421 122344566688899999875 5666 4689999999988
Q ss_pred --CeeEEEeCCccc---------cCCccceEEEEEeCCCCeEEEEec---------------------------------
Q 024451 79 --GLRTSVFGGEFQ---------SGHTADVLSVSISGSNSRMFVSGS--------------------------------- 114 (267)
Q Consensus 79 --~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~s~~--------------------------------- 114 (267)
+........... ..+...+.++.|+|. ++.+++++
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 654433211100 000012467889875 55666665
Q ss_pred CCCeEEEEeCCCcccceEEe--eccccceeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451 115 CDSTARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGENEIPH 187 (267)
Q Consensus 115 ~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 187 (267)
.+..|++||+.... ..... ..|...+..++|+|+|+.+++++.|+ .|.+||+.+++....+...........
T Consensus 233 ~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 233 HHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999987433 22222 24566789999999999999888776 899999998843333332222111112
Q ss_pred EEEEEEcc--CCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEE-EEECCCCCeEEEeECC-C----cEEEE
Q 024451 188 VTSIAFSI--SGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWD-T----NLKIW 258 (267)
Q Consensus 188 v~~~~~s~--~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~d-g----~i~~w 258 (267)
+..++|+| +|++++++..+|.+++|+.. ..+....+ ..|...+.. ++|+|+|+.|+.++.+ + .|..|
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 35678999 99999999889988888764 33333322 345566766 7999999988765554 4 44444
Q ss_pred ec
Q 024451 259 AF 260 (267)
Q Consensus 259 ~~ 260 (267)
++
T Consensus 388 d~ 389 (706)
T 2z3z_A 388 DI 389 (706)
T ss_dssp ET
T ss_pred Ec
Confidence 54
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2e-19 Score=160.26 Aligned_cols=246 Identities=11% Similarity=0.031 Sum_probs=157.3
Q ss_pred ceeeCCCCCeEEEccCC---------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451 2 TCAFSPTGQSVACGGLD---------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~ 72 (267)
+++|+|||++|++++.+ +.+.+||+.... ........+|...+.+++|+|++. .|+.++. +.|+
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~ 137 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-----PQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIY 137 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-----CEECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEE
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc-----eEeccCCccccccccccEECCCCC-EEEEEEC-CeEE
Confidence 47899999999998764 788899987532 111222345666688899999875 6777765 7999
Q ss_pred EEeCCCCeeEEEeCCccc----cCCc---------cceEEEEEeCCCCeEEEEecCCC----------------------
Q 024451 73 LWDITTGLRTSVFGGEFQ----SGHT---------ADVLSVSISGSNSRMFVSGSCDS---------------------- 117 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~~----~~~~---------~~i~~~~~~~~~~~~~~s~~~d~---------------------- 117 (267)
+||+.++........... .++. ..+.++.|+|. ++.+++++.|+
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 999988765544321100 0000 12367889975 55666665432
Q ss_pred ------------eEEEEeCCCcccceEEeecc------ccceeEEEEecCCCEEEEeeC----CCcEEEEeCCCCeeeEE
Q 024451 118 ------------TARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQLQV 175 (267)
Q Consensus 118 ------------~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 175 (267)
.|++||+.... ....+..+ ...+..++|+|+|+++++... +..|.+||+.+++....
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 79999986433 23444433 567889999999998876643 35799999998876554
Q ss_pred EEeecCCCCCCc-EEEEEEccCCCEEEE--EEeCC------eEEEEeC-Cccce--eeecccccCCccceEE-EEEECCC
Q 024451 176 YYQQHGENEIPH-VTSIAFSISGRLLFA--GYSNG------DCYVWDT-LLAKV--VLNLGSLQNSHEGRIT-CLGLSAD 242 (267)
Q Consensus 176 ~~~~~~~~~~~~-v~~~~~s~~~~~l~~--g~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~v~-~~~~~p~ 242 (267)
....+. ..... ...++|+|+|+.|+. +..++ .|++||. ...+. ...+ ..+...+. .++|+|+
T Consensus 296 ~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l----~~~~~~~~~~~~~spd 370 (723)
T 1xfd_A 296 HEDESE-AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKILAYDEK 370 (723)
T ss_dssp EEEECS-SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----CCSSSCEEEEEEEETT
T ss_pred EEeccC-CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe----ecCCeEEEeeeEEcCC
Confidence 432221 10000 136789999997765 34566 5777873 33320 2211 12223344 4799999
Q ss_pred CCeEEEeECC---CcEEEEecC
Q 024451 243 GSALCTGSWD---TNLKIWAFG 261 (267)
Q Consensus 243 ~~~l~sgs~d---g~i~~w~~~ 261 (267)
|+.|+..+.+ +.++||++.
T Consensus 371 g~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 371 GNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp TTEEEEEESSSCTTCCEEEEEC
T ss_pred CCEEEEEEcCCCCcceEEEEEe
Confidence 9999876665 789999863
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=1.6e-19 Score=148.34 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=155.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCe-eEEEee-------------C
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HLITSS-------------G 67 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~-------------~ 67 (267)
.++|+|+|++|++++.+ .+.+|++... +..........+ +...+++|+|++.. +++++. .
T Consensus 44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~----g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMK-KWSSFAVKSP----TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp EEEECTTSSEEEEEEBT-EEEEEEEEET----TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred EEEECCCCCEEEEEccc-eEEEEEECCC----CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 46899999999998888 9999998521 111111111111 12344788887643 355553 6
Q ss_pred CCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC-Cccc-ceEEee--cccccee
Q 024451 68 DQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASR-AVRTFH--GHEGDVN 142 (267)
Q Consensus 68 d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~-~~~~-~~~~~~--~~~~~i~ 142 (267)
++++.+|++.. +.....+.. ....+...+..+.++|....++++...++.|++|++. .... .+..+. .|...+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQN-YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CceEEEEccCCCCcCcceEee-EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 89999999973 433222210 0012345678899997654444444456799999986 3221 122232 2355688
Q ss_pred EEEEecCCCEEEEeeC-CCcEEEEeCC--CCeeeE---EEEeecC--CCCCC------cEEEEE-EccCCCEEEEEEeCC
Q 024451 143 TVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQ---VYYQQHG--ENEIP------HVTSIA-FSISGRLLFAGYSNG 207 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~~~~~--~~~~~------~v~~~~-~s~~~~~l~~g~~dg 207 (267)
.++|+|+|+++++++. ++.|.+|+++ +++... .+..... ..+.. .+..++ |+|+|++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999887774 7899999875 444321 1111100 00011 478899 999999988776533
Q ss_pred ------eEEEEeCC-ccceeeecccccCCccceEEEEEECC---CCCeEEEeECC-CcEEEEecC
Q 024451 208 ------DCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSA---DGSALCTGSWD-TNLKIWAFG 261 (267)
Q Consensus 208 ------~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~sgs~d-g~i~~w~~~ 261 (267)
.|.+|++. .++... .......+......++|+| +|++|++++.+ +.|++|++.
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~-~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEK-QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEE-EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCCCCeEEEEEECCCCCEEE-eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 89999975 333221 1000011233345688999 89999998874 899999874
No 154
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=3.3e-17 Score=129.85 Aligned_cols=245 Identities=15% Similarity=0.171 Sum_probs=164.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~ 80 (267)
.++++++|+++++...++.|.+||..... ....+......+|...+..+++.+.++.++++... ++.|++||. ++.
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~ 110 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 110 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred eEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc
Confidence 46789999999998889999999865311 00000000112455678888985434455555433 889999994 454
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEEeeC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
....+. ..+...+..+++++ +++++++...++.|.+||.. ......+. ++...+..++++|+++++++...
T Consensus 111 ~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 111 FVRKFG----ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp EEEEEC----TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred EEEEec----CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 444442 12334577888886 45688888888999999964 23333342 34456889999999998888888
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
++.|++||.. ++.+..+.. ......+..++++++|+++++...++ .|.+||.. ++.+..+.. ........++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~--~~~~~~~~~i 256 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES--KVKHAQCFDV 256 (286)
T ss_dssp GTEEEEEETT-CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE--SSCCSCEEEE
T ss_pred CCEEEEEcCC-CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc--cCCCCcceeE
Confidence 9999999975 343333211 11124578999999999888887775 99999954 333333311 1122346789
Q ss_pred EECCCCCeEEEeECCCcEEEEecCceE
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+++|+|+++++ +.|+.|++|++....
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEccccc
Confidence 99999987777 679999999986543
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=161.38 Aligned_cols=239 Identities=11% Similarity=0.043 Sum_probs=151.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeC---------CC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSG---------DQ 69 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~---------d~ 69 (267)
..+|+|+|++++++ .|++|++||+.... ....+.+|.. .+.+++|+|++. +|++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ-------SYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCC-------EEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCc-------EEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEeecce
Confidence 46899999766654 69999999986532 2333344433 388999999864 6777665 78
Q ss_pred eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-eccccce-------
Q 024451 70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDV------- 141 (267)
Q Consensus 70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i------- 141 (267)
.|++||+.++....... -...+..++|+|.+ +.++.+. ++.|++|++.... ..... .++...+
T Consensus 91 ~i~~~d~~~g~~~~~~~------l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~~v~~g~~~~ 161 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNE------LPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDP-PFQITFNGRENKIFNGIPDW 161 (719)
T ss_dssp EEEEEETTTTEECCSSC------CCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSC-CEECCCCCBTTTEEESSCCH
T ss_pred EEEEEECCCCcccccee------cCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcCCeEcccccc
Confidence 99999999886411010 11346778899754 5556554 7899999986433 22211 2222212
Q ss_pred ----------eEEEEecCCCEEEEeeCCC----------------------------------cEEEEeCCCCeee--EE
Q 024451 142 ----------NTVKFFPDGNRFGTGSDDG----------------------------------TCRLFDIRTGHQL--QV 175 (267)
Q Consensus 142 ----------~~~~~~~~~~~l~~~~~d~----------------------------------~i~iwd~~~~~~~--~~ 175 (267)
.++.|+|||++|+.++.|. .|++||+.+++.. ..
T Consensus 162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~ 241 (719)
T 1z68_A 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE 241 (719)
T ss_dssp HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence 4899999999999988652 7889999876532 11
Q ss_pred EEe-ecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEEe----CCccceeeecccccCCccceEE-----EEEECC
Q 024451 176 YYQ-QHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWD----TLLAKVVLNLGSLQNSHEGRIT-----CLGLSA 241 (267)
Q Consensus 176 ~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~~~v~-----~~~~~p 241 (267)
+.. .....+...+..++|+|+++++++....+ .|++|| ..+++...........|.+.+. .+.|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 321 (719)
T 1z68_A 242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY 321 (719)
T ss_dssp CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence 100 00011334688999999988777754432 488899 7665433211000023555555 789999
Q ss_pred CCCeEEE--eECCCcEEEE
Q 024451 242 DGSALCT--GSWDTNLKIW 258 (267)
Q Consensus 242 ~~~~l~s--gs~dg~i~~w 258 (267)
||+.|+. ...+|...||
T Consensus 322 dg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 322 DAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp TSSCEEEEEECTTSCEEEE
T ss_pred CCCeEEEEEEccCCceEEE
Confidence 9996554 5566755555
No 156
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=6e-17 Score=131.19 Aligned_cols=246 Identities=13% Similarity=0.120 Sum_probs=169.7
Q ss_pred ceeeCCCCCeEEEccCC------------------------CeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEec
Q 024451 2 TCAFSPTGQSVACGGLD------------------------SVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVP 56 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d------------------------~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~ 56 (267)
.++++|+|+++++...+ ++|.+||..... +.... .++-.....+++.|
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------ILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-------EEEEECTTTCSSEEEEEECT
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-------EEeccCCCccCCceEEEECC
Confidence 47899999999998877 478888865321 22222 24445678899998
Q ss_pred CCCeeEEEeeCCCeEEEEeCCCCe-eEEEeCCccc----cCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccc
Q 024451 57 DEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQ----SGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA 130 (267)
Q Consensus 57 ~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~ 130 (267)
++. ++++...++.|++||..... ....+..... .++-.....+++++.+++++++.+ .++.|++|+.. ...
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~--g~~ 177 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS--GKF 177 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT--SCE
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC--CCE
Confidence 764 77788888999999986542 2333321110 223446788999875677888886 68999999953 333
Q ss_pred eEEeec----------cccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 131 VRTFHG----------HEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 131 ~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
+..+.. +......++++|+ +.++++...++.|++||..+++.+..+... .....+..++|+| +..
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---SFGRNVFAISYIP-GFL 253 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT---TTTTCEEEEEEET-TEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc---ccCCCcceeeecC-CEE
Confidence 444422 1223789999998 777788888999999999877765544221 2234578889998 333
Q ss_pred EEE-------EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 200 LFA-------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 200 l~~-------g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.+ ...+..+++||...++.+..+... ..+......++++|+|+++++...++.|++|++.+
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333 233458999998887766554211 24556688999999998889988999999998754
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=3.4e-17 Score=133.35 Aligned_cols=236 Identities=10% Similarity=0.071 Sum_probs=146.0
Q ss_pred cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee--CCCeEEEEeCCCCeeEEEeCCccccCC
Q 024451 16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGH 93 (267)
Q Consensus 16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~ 93 (267)
+.++.+.+|+++..+ +..... ....+......++|+|++. +++++. .++.|++||+.++....... ...+
T Consensus 13 ~~~~~i~v~~~d~~t---g~~~~~-~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~---~~~~ 84 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTA---KTLTND-GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT---VVAP 84 (347)
T ss_dssp SSCCEEEEEEEETTT---TEEEEE-EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE---EEEE
T ss_pred CCCCCEEEEEEcCCC---CeEEEe-eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee---eecC
Confidence 456789999886532 111111 1223445667799999764 443333 26899999997765322211 0124
Q ss_pred ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec---------cccceeEEEEecCCCEEEEeeCCCcE
Q 024451 94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG---------HEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
...+..+++++....++++...++.+++|++..... .+..+.. +...+.+++|+|+++++++...++.|
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v 164 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV 164 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence 456778889976544544444789999999853221 1222211 11247889999999977777778999
Q ss_pred EEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCc--cce--eeecccccC--CccceE
Q 024451 163 RLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLL--AKV--VLNLGSLQN--SHEGRI 234 (267)
Q Consensus 163 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~--~~~--~~~~~~~~~--~~~~~v 234 (267)
.+||+. +++... ...... .....+..++|+|+|+++++ +..++.+.+|++.. ++. ......... .....+
T Consensus 165 ~~~~~~~~g~~~~-~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 165 YVYNVSDAGQLSE-QSVLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEECTTSCEEE-EEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEECCCCcEEE-eeeEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 999998 443222 111111 11224678999999997666 45678999998763 222 111111111 112458
Q ss_pred EEEEECCCCCeE-EEeECCCcEEEEecC
Q 024451 235 TCLGLSADGSAL-CTGSWDTNLKIWAFG 261 (267)
Q Consensus 235 ~~~~~~p~~~~l-~sgs~dg~i~~w~~~ 261 (267)
..++|+|+|++| ++...++.|.+|++.
T Consensus 243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 243 AAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 899999999987 556678999999986
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=1.7e-17 Score=153.52 Aligned_cols=233 Identities=15% Similarity=0.031 Sum_probs=168.9
Q ss_pred eeeCCCCCeEEEccCCCeEE-EeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVACGGLDSVCS-IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~-~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++|+ +|+.|+.++.++.+. +|++.... . ..+.+|...+..++|+|++ .+|++++.++.|++||+.++..
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-------~-~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGK-------A-EKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCC-------E-EECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCC-------c-eEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce
Confidence 5688 999999998888888 88875421 2 2233788899999999976 5788999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----------CeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
.... .+|...+..++|+|. ++.+++++.+ +.|++||+... + ...+..|...+..+.|+|+|+
T Consensus 413 ~~~~-----~~~~~~v~~~~~SpD-G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 413 TVIE-----RSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp EEEE-----ECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSC
T ss_pred EEec-----cCCCCCccceEECCC-CCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCC
Confidence 5544 246777888999874 5666666554 48999998743 2 566667888889999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCee-------eEEE-Ee----------------------e--------cCCCCCCcEEEEEE
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQ-------LQVY-YQ----------------------Q--------HGENEIPHVTSIAF 193 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~-------~~~~-~~----------------------~--------~~~~~~~~v~~~~~ 193 (267)
+++.++.++..++|+...... +..+ .. . ........+..+++
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~ 564 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 564 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence 999999988888887543221 0000 00 0 00011235788999
Q ss_pred ccCCCEEEE-------------EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 194 SISGRLLFA-------------GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 194 s~~~~~l~~-------------g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+|++..+++ ......+++||..+++... + ...+.+++|||||++|++++.| .+++|++
T Consensus 565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~v~~~~~S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V-------KNNLTDLRLSADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E-------EEEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e-------ecCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence 999987775 1124578889987765321 1 1568899999999999998866 8999997
Q ss_pred Cc
Q 024451 261 GG 262 (267)
Q Consensus 261 ~~ 262 (267)
..
T Consensus 636 ~~ 637 (1045)
T 1k32_A 636 LE 637 (1045)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2e-18 Score=154.32 Aligned_cols=242 Identities=9% Similarity=0.051 Sum_probs=150.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee-----eEEEEEEecCCCeeEEEeeCC--------
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-----YVSCCQYVPDEDTHLITSSGD-------- 68 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d-------- 68 (267)
.+.|+|+|++++++ |++|++||+.... ....+.+|.. ....+.|+|++. +|+.++.+
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGN-------SSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSY 90 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCC-------EEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCc-------eEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEcc
Confidence 57899999999986 9999999986532 2223444432 223478899864 67777765
Q ss_pred -CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-Eeeccccce-----
Q 024451 69 -QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDV----- 141 (267)
Q Consensus 69 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i----- 141 (267)
+.+.+||+.++..... ..+...+....|+|.+ +.++.+ .|+.|++|+..... ..+ ...++...+
T Consensus 91 ~~~~~~~d~~~~~~~~l------~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~-~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITE------ERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEEEETTTTEECCS------SCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBC
T ss_pred ceEEEEEECCCCcEEEc------ccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCc-eEEEcCCCCccceecCcc
Confidence 5567999998864321 2355678899999755 445555 56899999986433 221 112222222
Q ss_pred ------------eEEEEecCCCEEEEeeCCC------------------------------------cEEEEeCCC---C
Q 024451 142 ------------NTVKFFPDGNRFGTGSDDG------------------------------------TCRLFDIRT---G 170 (267)
Q Consensus 142 ------------~~~~~~~~~~~l~~~~~d~------------------------------------~i~iwd~~~---~ 170 (267)
..+.|+|||+.||..+.|. +|.+||+.+ +
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence 3489999999998875332 477788877 5
Q ss_pred ee--eEEEEeec-CCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccc----eeeecccccCCccceEE----
Q 024451 171 HQ--LQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAK----VVLNLGSLQNSHEGRIT---- 235 (267)
Q Consensus 171 ~~--~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~----~~~~~~~~~~~~~~~v~---- 235 (267)
+. ...+.... ...+...+..++|+|+|+.++..... ..|++||..+++ ...........|...|.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 21 11111100 00133468899999999977665443 379999987765 11111001123443333
Q ss_pred -EEEECCCCCeEE-EeE-CCC--cEEEEecCc
Q 024451 236 -CLGLSADGSALC-TGS-WDT--NLKIWAFGG 262 (267)
Q Consensus 236 -~~~~~p~~~~l~-sgs-~dg--~i~~w~~~~ 262 (267)
...|+|||+.|+ ..+ .+| .|.+|+..+
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 678999999877 665 445 466666543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.6e-16 Score=130.04 Aligned_cols=242 Identities=12% Similarity=0.107 Sum_probs=148.8
Q ss_pred CCCCeEEEc----cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCCC
Q 024451 7 PTGQSVACG----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITT 78 (267)
Q Consensus 7 ~~g~~l~~~----~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~~ 78 (267)
+....+..| +.++.+.+|.+.... +........ +......++|+|++ ++|++++.+ +.|.+|++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~---g~~~~~~~~--~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEET---GESLPLSDA--EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTT---CCEEEEEEE--ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEET
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCC---CCEEEeecc--cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeC
Confidence 334445555 456789999886422 222222222 55667778999976 467777775 7999998865
Q ss_pred --CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEe---ec--------cccceeE
Q 024451 79 --GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTF---HG--------HEGDVNT 143 (267)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~---~~--------~~~~i~~ 143 (267)
+....... ...+......+++ ....++++...++.+.+|++...... .... .+ +...+++
T Consensus 85 ~~g~~~~~~~---~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 85 EKGTLHLLNT---QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC 159 (361)
T ss_dssp TTTEEEEEEE---EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred CCCcEEEeeE---eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence 33222111 0113334556666 34445555567899999998643221 1111 11 1223578
Q ss_pred EEEecCCCEEEEee-CCCcEEEEeCCCCee------eEEE---EeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEE
Q 024451 144 VKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ------LQVY---YQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVW 212 (267)
Q Consensus 144 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~ 212 (267)
++|+|++++++++. .++.|++|++..... +... .... ......+..++|+|++++++++. .++.|.+|
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 99999999665554 588999999875442 2111 0001 11123468899999999887777 58999999
Q ss_pred eCCccce--eeecccccCCccceEEEEEECCCCCeEEEeECC--CcEEEEecC
Q 024451 213 DTLLAKV--VLNLGSLQNSHEGRITCLGLSADGSALCTGSWD--TNLKIWAFG 261 (267)
Q Consensus 213 d~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d--g~i~~w~~~ 261 (267)
|+..++. +...... ..+......++|+|||++|+++..+ +.|.+|++.
T Consensus 239 ~~~~g~~~~~~~~~~~-~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 239 RYADGMLDEIQTVAAD-TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEETTEEEEEEEEESC-SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EecCCceEEeEEEecC-CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 9875432 2112111 2233456899999999998766654 899999985
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=2.3e-17 Score=143.61 Aligned_cols=227 Identities=11% Similarity=0.085 Sum_probs=151.9
Q ss_pred ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
..+|+|| +++++++. +...++|.+...... .........++. ..+|+|+++..+++.+.++.+.+||+.+
T Consensus 69 ~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g--~~~~l~~~~~~~----~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 69 DPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG--EEQRLEAVKPMR----ILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp EECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT--CCEECTTSCSBE----EEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred cccCCCC-eEEEEeccCCCCcceEEEEEeccCCC--ccccccCCCCce----eeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 3578999 77777664 556677766531011 111111122222 4467777655445444445555999998
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
+....... +.. .++.++| +++.+++++.+ ..|++||+... ....+..|...+..++|+|||+.++
T Consensus 142 g~~~~l~~------~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g--~~~~l~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 142 GGLRELAR------LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSG--GLRVFDSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp TEEEEEEE------ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTC--CCEEECCSSCEEEEEEECTTSCEEE
T ss_pred CcEEEeec------CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCC--CceEeecCCCccccceECCCCCEEE
Confidence 86554432 111 6777886 45677766666 78999998643 2456677888899999999999999
Q ss_pred EeeCCC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE--------EccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451 155 TGSDDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA--------FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 155 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 224 (267)
++..++ .|.+||+.+++.. . ...+ ...+..+. |+|+|.++++++.+|.+++|++ ++...
T Consensus 211 ~~~~~~~~~i~~~d~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--- 279 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGSVE-D-LELP----SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--- 279 (582)
T ss_dssp EEECSSCEEEEEECTTTCCEE-E-CCCS----CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---
T ss_pred EccCCCeeEEEEEcCCCCcEE-E-ccCC----CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---
Confidence 888888 8999999887654 2 2211 11233334 9999988899999999999998 44322
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECCCc---EEEEecCc
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWDTN---LKIWAFGG 262 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~---i~~w~~~~ 262 (267)
...+.+.+++|+ +++++++++.+.+ +.+|+..+
T Consensus 280 ----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 ----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 234678899999 9999998888755 55565554
No 162
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.77 E-value=2.4e-16 Score=127.19 Aligned_cols=189 Identities=10% Similarity=0.074 Sum_probs=134.6
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc-ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-cc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GH 137 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~ 137 (267)
.++++++.++.|++||..+++....+.. ++.. .+..+++++....+++++..++.|.+||+.... ....+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEcCC
Confidence 4789999999999999998876655431 2211 366788887665677788888999999987533 333333 22
Q ss_pred ----ccceeEEEEecCCCEEEEee------------CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 138 ----EGDVNTVKFFPDGNRFGTGS------------DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 138 ----~~~i~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
...+..++|+|++++++++. .++.|.+||+.+++....+.. . ..+..++|+|++++++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~----~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P----RQITMLAWARDGSKLY 150 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C----SSCCCEEECTTSSCEE
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--C----CCcceeEECCCCCEEE
Confidence 22578899999999988876 579999999988776544322 1 2356788999999888
Q ss_pred EEEeCCeEEEEeCCccceeeeccccc------------------------------------------------------
Q 024451 202 AGYSNGDCYVWDTLLAKVVLNLGSLQ------------------------------------------------------ 227 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------------------ 227 (267)
++ ++.|++||....+....+....
T Consensus 151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp EE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred Ee--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 87 6899999987665432211000
Q ss_pred --------CCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 228 --------NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 228 --------~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
..+...+.+++|+|+|++|+++ ++.|.+|++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 0011234569999999999988 799999998654
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=6e-16 Score=127.05 Aligned_cols=240 Identities=7% Similarity=0.038 Sum_probs=144.5
Q ss_pred EEEccC--CCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC-CCeeEEEeCC
Q 024451 12 VACGGL--DSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT-TGLRTSVFGG 87 (267)
Q Consensus 12 l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~ 87 (267)
+..|+. ++.|.+|++...+ +........ .++...+..++|+|++ ++|++++.+ .|.+|++. ++........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~---g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEK---LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTT---TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEccCCCcEEEEEEECCC---CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 344443 2568888765321 111111111 1223356678999976 467888877 99999997 6654332210
Q ss_pred ccccCCccceEEEEEeCCCCe-EEEEec-------------CCCeEEEEeCCCcccceEEee----ccccceeEEEEecC
Q 024451 88 EFQSGHTADVLSVSISGSNSR-MFVSGS-------------CDSTARLWDTRVASRAVRTFH----GHEGDVNTVKFFPD 149 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~-~~~s~~-------------~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~~~~ 149 (267)
. ..+ ....++++|.+.. +++++. .++.+.+|++.........+. .+...+.+++|+|+
T Consensus 80 ~-~~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 80 P-IGG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp E-CCS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred e-cCC---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence 0 001 1233556654332 344543 689999999863333222222 24567899999999
Q ss_pred CCEEEEee-CCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCC--cccee---e
Q 024451 150 GNRFGTGS-DDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL--LAKVV---L 221 (267)
Q Consensus 150 ~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~--~~~~~---~ 221 (267)
|++++++. .++.|++||+. +++..... ......+...+..++|+|+|++++++.. ++.+.+|+.. +++.. .
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~-~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEee-eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 99887765 46799999998 66543211 1111111235789999999999988765 6899999754 33321 1
Q ss_pred ecccccC---Cccc------eEEEEE-ECCCCCeEEEeECCC------cEEEEecC
Q 024451 222 NLGSLQN---SHEG------RITCLG-LSADGSALCTGSWDT------NLKIWAFG 261 (267)
Q Consensus 222 ~~~~~~~---~~~~------~v~~~~-~~p~~~~l~sgs~dg------~i~~w~~~ 261 (267)
....++. .|.. .+..++ |+|||++|++++.+. .|.+|++.
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 1111111 1222 578999 999999988766533 89999874
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=1e-16 Score=132.24 Aligned_cols=238 Identities=14% Similarity=0.068 Sum_probs=148.2
Q ss_pred eeeCCCCCeEEEccC-CCe--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 3 CAFSPTGQSVACGGL-DSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
.+|+|||++|+.++. ++. |.+||+... .......+|...+..+.|+|++ +.|+.++.++.|++||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-------~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-------VATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC-------EEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-------ceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCC
Confidence 579999999998887 774 666676532 1334445666666567899976 46888888999999999988
Q ss_pred eeEEEeCCccccCCccceEEEE--EeCCCCeEEEE----------------------ecCCCeEEEEeCCCcccceEEee
Q 024451 80 LRTSVFGGEFQSGHTADVLSVS--ISGSNSRMFVS----------------------GSCDSTARLWDTRVASRAVRTFH 135 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~s----------------------~~~d~~i~iwd~~~~~~~~~~~~ 135 (267)
.....+. .+...+.... +++ ++++++. ...+..|.+||+... ....+.
T Consensus 113 ~~~~~~~-----~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~l~ 184 (388)
T 3pe7_A 113 EENVVYQ-----VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG--ESTVIL 184 (388)
T ss_dssp CEEEEEE-----CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC--CEEEEE
T ss_pred cceeeee-----chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC--ceEEee
Confidence 7655442 1222232222 243 4455442 234568999998743 244455
Q ss_pred ccccceeEEEEec-CCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCC
Q 024451 136 GHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNG 207 (267)
Q Consensus 136 ~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg 207 (267)
.+...+..+.|+| +++.++....+ ..|.++|...++.. .+.. ......+....|+|+|+.|+..+ .++
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT---HAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC---CCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee---CCCCcccccceECCCCCEEEEEecCCC
Confidence 5667789999999 99988877653 37788887654332 2111 11112467889999999775544 333
Q ss_pred ----eEEEEeCCccceeeecccccCCccce---EEEEEECCCCCeEEEe---------ECCCcEEEEecCc
Q 024451 208 ----DCYVWDTLLAKVVLNLGSLQNSHEGR---ITCLGLSADGSALCTG---------SWDTNLKIWAFGG 262 (267)
Q Consensus 208 ----~i~i~d~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~l~sg---------s~dg~i~~w~~~~ 262 (267)
.|++||+.+++..... .. ..+... ...++|+|||+.|+.. ..+..|.+|++.+
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~-~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLT-SM-PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEE-EE-CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CCcceEEEEecCCCceEEEE-cC-CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 3999998876532211 11 111000 1113689999988854 4466899998754
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=5.6e-16 Score=125.74 Aligned_cols=157 Identities=11% Similarity=0.054 Sum_probs=107.5
Q ss_pred EEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE
Q 024451 53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 132 (267)
Q Consensus 53 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 132 (267)
++.+ +..++++++.+++|++||..++.....+.. +....+..+++++.+..++++...++.|.+||+... +...
T Consensus 6 ~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~ 79 (349)
T 1jmx_B 6 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTF 79 (349)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEE
T ss_pred cccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEE
Confidence 3444 356888999999999999998876655532 111235678888765556677778899999998743 3343
Q ss_pred Eee-cc-----ccceeEEEEecCCCEEEEeeCC------------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 133 TFH-GH-----EGDVNTVKFFPDGNRFGTGSDD------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 133 ~~~-~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
.+. .+ ...+..++|+|+++++++++.+ +.|.+||+.+++.......... ...+.+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s 156 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAA 156 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEEC
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC---CCcccceeEC
Confidence 343 22 2237889999999999988865 8999999987543221111111 1246788899
Q ss_pred cCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 195 ISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 195 ~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
|+++ ++++ ++.|++||..+++...
T Consensus 157 ~dg~-l~~~--~~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 157 DDGS-LYVA--GPDIYKMDVKTGKYTV 180 (349)
T ss_dssp TTSC-EEEE--SSSEEEECTTTCCEEE
T ss_pred CCCc-EEEc--cCcEEEEeCCCCceec
Confidence 9999 5554 3459999987766543
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=141.70 Aligned_cols=238 Identities=10% Similarity=0.019 Sum_probs=147.8
Q ss_pred ceeeCCCCCeEEEccC---------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451 2 TCAFSPTGQSVACGGL---------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~---------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~ 72 (267)
+.+|+|||++|++++. |+++++||+...... ....+ ...+..++|+|++. .|+.++ |+.|+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-----~~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~ 133 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-----RGNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIY 133 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----CSSCC---CSSBCCEEECSSTT-CEEEEE-TTEEE
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-----cceec---CcccccceECCCCC-EEEEEE-CCeEE
Confidence 4689999999999876 789999998653210 00111 13577899999875 567664 78999
Q ss_pred EEeCCCCeeEEEeCCcc----ccCCcc---------ceEEEEEeCCCCeEEEEecCCC----------------------
Q 024451 73 LWDITTGLRTSVFGGEF----QSGHTA---------DVLSVSISGSNSRMFVSGSCDS---------------------- 117 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~----~~~~~~---------~i~~~~~~~~~~~~~~s~~~d~---------------------- 117 (267)
+||+.++.......... ..++.. ...++.|+|. ++.|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI 212 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence 99998876543321100 011111 1147889874 56667665442
Q ss_pred ------------eEEEEeCCCcccc--eE-----EeeccccceeEEEEecCCCEEEEeeCC----CcEEEEe----CCCC
Q 024451 118 ------------TARLWDTRVASRA--VR-----TFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFD----IRTG 170 (267)
Q Consensus 118 ------------~i~iwd~~~~~~~--~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~ 170 (267)
.|++||+...... .. .+.+|...+..++|+|+++.+++.... ..|.+|| ..++
T Consensus 213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp ECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred cCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 7889998743211 11 123577788999999998777664432 2488899 7666
Q ss_pred eeeEEEE---eecCCCCCCcEE-----EEEEccCCCEEEE--EEeCC--eEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 171 HQLQVYY---QQHGENEIPHVT-----SIAFSISGRLLFA--GYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 171 ~~~~~~~---~~~~~~~~~~v~-----~~~~s~~~~~l~~--g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+...... .. +...+. .+.|+|+|+.++. +..+| .|++||....+. ..+ ..+...+..+.
T Consensus 293 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~l----t~~~~~v~~~~ 363 (719)
T 1z68_A 293 DCPKTQEHIEES----RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQI----TSGKWEAINIF 363 (719)
T ss_dssp ECCGGGEEEEEC----SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EEC----SCSSSCEEEEE
T ss_pred ceEEEEeccccc----CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eec----ccCceEEEEEE
Confidence 5432221 11 112233 6789999996554 33445 677778765442 222 23444567776
Q ss_pred ECCCCCeEEEeECC-----CcEEEEec
Q 024451 239 LSADGSALCTGSWD-----TNLKIWAF 260 (267)
Q Consensus 239 ~~p~~~~l~sgs~d-----g~i~~w~~ 260 (267)
++ +++.|+..+.+ +..++|.+
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 66 77777766654 88999975
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=2.1e-16 Score=130.37 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=145.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEE--EecCCCeeEEE---------------
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ--YVPDEDTHLIT--------------- 64 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s--------------- 64 (267)
..+|+|||+.|+.++.++.+.+||+.... .......+...+.... ++|++. +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence 45799999999999999999999987532 2222333444443333 367654 4442
Q ss_pred -------eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccce
Q 024451 65 -------SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAV 131 (267)
Q Consensus 65 -------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~ 131 (267)
...+..|.+||+.++...... .+...+..+.|+|.+++.++.... ...|.++|... . ..
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~ 228 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-T-NM 228 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-C-CC
T ss_pred hhhhhhccCCcceEEEEECCCCceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-C-ce
Confidence 234578999999988654443 234457788899724455554443 33677777653 2 23
Q ss_pred EEeeccc--cceeEEEEecCCCEEEEeeC--C---CcEEEEeCCCCeeeEEEEeecCCCCC-CcEEEEEEccCCCEEEEE
Q 024451 132 RTFHGHE--GDVNTVKFFPDGNRFGTGSD--D---GTCRLFDIRTGHQLQVYYQQHGENEI-PHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 132 ~~~~~~~--~~i~~~~~~~~~~~l~~~~~--d---~~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g 203 (267)
..+..+. ..+....|+|+|+.|+..+. + ..|.+||+.+++...... ....... .......|+|+|+.|+..
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC---
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeE
Confidence 3443333 34778899999997765443 2 239999999876433211 1110000 000112689999988754
Q ss_pred ---------EeCCeEEEEeCCccceeeecccccCCccc-----------eEEEEEECCCCCeEEEeE-CCCcEEEEec
Q 024451 204 ---------YSNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGS-WDTNLKIWAF 260 (267)
Q Consensus 204 ---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~sgs-~dg~i~~w~~ 260 (267)
..+..|++||+..++... + ..+.. .+.+++|+|||+.|+..+ .+|...||.+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHR-V----ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEE-E----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEE-e----ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 345699999987755422 1 11222 467789999999888665 5888888864
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=2.4e-15 Score=132.75 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=153.0
Q ss_pred eeeCCCCCeEEEc--cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEE---------EEEEe--cCCCe-eEEEeeCC
Q 024451 3 CAFSPTGQSVACG--GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVS---------CCQYV--PDEDT-HLITSSGD 68 (267)
Q Consensus 3 ~~~~~~g~~l~~~--~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-~l~s~~~d 68 (267)
.+|++++..+++. +.++...+|...... ..+.+..|...+. ...|+ |++.. ++++...+
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRADG-------AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECTTS-------CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECCCC-------CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 5678877777777 678899999863211 1223444444444 45555 87764 34444446
Q ss_pred CeEEEEeCC--C-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----------CeEEEEeCCCcc----cce
Q 024451 69 QTCVLWDIT--T-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----------STARLWDTRVAS----RAV 131 (267)
Q Consensus 69 ~~v~iwd~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----------~~i~iwd~~~~~----~~~ 131 (267)
..|.+|++. . +.... +.......|...+..++|+|. ++.++.++.+ ..|++||+.... ...
T Consensus 102 ~~l~~~~~~~~g~~~~~~-l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRP-LTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp CCEEEECTTSTTCCCCEE-CSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CeEEEEcCCCCCCCCCEe-ccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 778777776 2 43222 211000115667888999975 4556666655 579999986410 233
Q ss_pred EEee-ccccceeEEEEecCCCEEEEeeCC--------CcEEEEeCC-CCe--eeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 132 RTFH-GHEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIR-TGH--QLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 132 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~-~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
..+. .+...+..+.|+|||++|+..+.+ ..|.+||+. +++ ....+...+ ...+..+.|+|+|++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spdg~l 255 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPDGSL 255 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTTSCE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCCCeE
Confidence 4454 555678889999999999987755 379999998 451 233333221 235789999999997
Q ss_pred EEEEEeCC--eEEEEeCCccceeeecccccCCccce--------EEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 200 LFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGR--------ITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 200 l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
++++..++ .|++||...++..... ..+... +..++|+|+++++++++. +.++||.+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~----~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLC----RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESS----CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EEEECCCCCeEEEEEECCCCceeecc----cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 77777777 7777776544432211 111111 457899999999999998 99999943
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=1.8e-14 Score=114.67 Aligned_cols=227 Identities=9% Similarity=0.031 Sum_probs=151.8
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
..+|+|+|+ +++++..++.|..|+.... ...+..+...+.++.+.|++ .++++...++.|.+||..++.
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence 367999998 7888888999999997531 22344566778899999976 456666667899999997776
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEE----ec-------------CCCeEEEEeCCCcccceEEeeccccceeE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GS-------------CDSTARLWDTRVASRAVRTFHGHEGDVNT 143 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 143 (267)
........ .......+..+++++ +++++++ +. ..+.|..++.. . ....+..+......
T Consensus 102 ~~~~~~~~-~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 102 WESIADSF-EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNG 176 (296)
T ss_dssp EEEEECEE-TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEE
T ss_pred EEEEeecc-CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCcc
Confidence 44332110 011122355677876 5677776 32 13456556543 2 23344455566789
Q ss_pred EEEecCCCEEEEeeCCCcEEEEeCC-CCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 144 VKFFPDGNRFGTGSDDGTCRLFDIR-TGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 144 ~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
++|+|+++.+++.+.++.|.+||+. +++. ...+ . . ....+..++++++|++.++. ++.|.+||.. ++.
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-V---EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-C---SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-C---CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 9999999988777888999999986 4433 1222 1 1 12345678999999977766 8899999975 444
Q ss_pred eeecccccCCccceEEEEEE-CCCCCeEEEeECCCcEE
Q 024451 220 VLNLGSLQNSHEGRITCLGL-SADGSALCTGSWDTNLK 256 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~-~p~~~~l~sgs~dg~i~ 256 (267)
+..+ ..+.. +.+++| +|+++.|.+++.++..+
T Consensus 249 ~~~~----~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 249 LGRV----LTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp EEEE----ECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred EEEE----ECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 4333 22344 788999 69999999888874333
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=7.3e-15 Score=120.45 Aligned_cols=238 Identities=11% Similarity=0.082 Sum_probs=151.1
Q ss_pred eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCcccccccC------CeeeEEEEEEecCCCeeEEEee
Q 024451 3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSG------HKGYVSCCQYVPDEDTHLITSS 66 (267)
Q Consensus 3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~ 66 (267)
++|+|||++|..+. .+++|.+||..... ....+.. +......++++|++. +|+++.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n 126 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-------FEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQN 126 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-------EEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-------EEEEEEcCccccccCCCcceEEECCCCC-EEEEEC
Confidence 68999999998876 36789999975421 1221111 223345688999875 566554
Q ss_pred -C-CCeEEEEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE------Eeecc
Q 024451 67 -G-DQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR------TFHGH 137 (267)
Q Consensus 67 -~-d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~------~~~~~ 137 (267)
. +++|.+||+++++.... +.. .....+.+.|...+.+++.+.||.+.+|+.....+... .+..+
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGG-------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred CCCCCeEEEEECCCCcEEEEEecC-------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 3 68999999998876554 321 11122445555556778888999999998754333221 11111
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE-EeecC-----CC-CCCcEEEEEEccCCCEEEEEEe-----
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHG-----EN-EIPHVTSIAFSISGRLLFAGYS----- 205 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~~-~~~~v~~~~~s~~~~~l~~g~~----- 205 (267)
..++ .+.+.|++..++..+.++.+.++|+........- +.... .. .......++|+|++..+++...
T Consensus 200 ~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 200 DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 2221 2334677777777778899999998754322110 00000 00 0001123689999888877654
Q ss_pred ------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 206 ------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 206 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.+.|.+||..+.+.+..+. .+. ..+++|+|+|++|++++. +.|.+||....
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~----~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIP----GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEE----CTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccccCCCceEEEEECCCCcEEEEEe----cCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3489999999888776542 233 789999999999998876 99999997654
No 171
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=3.1e-14 Score=111.54 Aligned_cols=238 Identities=9% Similarity=0.010 Sum_probs=158.5
Q ss_pred ceeeCCCCCeEE-EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~-~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++++++|++++ +...++.|.+|+..... .......+...+.++.+.+++. ++++.. ++.|.+||.....
T Consensus 28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSC
T ss_pred ceEECCCCCEEEEccCCCCcEEEecCCCcc-------cceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCce
Confidence 467889999888 65788999999864321 1111122334567788888654 444444 8899999987654
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
... +. ......+..+.+++ +++++++...++.|.+|+..... ...........+..++++|+++.+++...++
T Consensus 99 ~~~-~~----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 171 (270)
T 1rwi_B 99 QTV-LP----FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN 171 (270)
T ss_dssp CEE-CC----CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCCEEEEEGGGT
T ss_pred Eee-ee----cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCCEEEEECCCC
Confidence 322 21 11224577888886 45677777778899999754322 1111122234578899999999888777788
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.|.+||......... . ......+..++++++|.+.++...++.|.+||........ . ...+...+.+++++
T Consensus 172 ~i~~~~~~~~~~~~~--~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~---~~~~~~~p~~i~~~ 242 (270)
T 1rwi_B 172 RVVKLEAESNNQVVL--P---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-L---PFTGLNTPLAVAVD 242 (270)
T ss_dssp EEEEECTTTCCEEEC--C---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-C---CCCSCSCEEEEEEC
T ss_pred EEEEEecCCCceEee--c---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-e---ccCCCCCceeEEEC
Confidence 999999876543211 1 1112457899999999877777778899999976543221 1 11233567899999
Q ss_pred CCCCeEEEeECCCcEEEEecCceE
Q 024451 241 ADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
|+|+++++.+.++.|+++++...+
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCEEEEECCCCEEEEEcCCCcc
Confidence 999988988899999999876544
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=3.2e-13 Score=109.09 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=148.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~ 77 (267)
.++|+|+|++++++..++.|.+||..... .......+...+.++.+.|++ .++++...+ +.|.+||.+
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCc-------EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCC
Confidence 46789999988888899999999875421 222222455678999999876 455555555 689999998
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
++.....+.. ......+..+.+++. ++++++... .+.|..++... .....+..+...+..++|+|+++
T Consensus 121 ~~~~~~~~~~---~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 121 GDNLQDIIED---LSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp SCSCEEEECS---SSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSS
T ss_pred CCEEEEEEcc---CccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCC--CEEEEeecCCCcccceEECCCCC
Confidence 7654433221 123446788888864 566666543 34566666542 12233333344578899999998
Q ss_pred EE-EEeeCCCcEEEEeCCC-CeeeEEEE---eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc
Q 024451 152 RF-GTGSDDGTCRLFDIRT-GHQLQVYY---QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 226 (267)
Q Consensus 152 ~l-~~~~~d~~i~iwd~~~-~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 226 (267)
.+ ++...++.|.+||+++ ++....+. ...... ...+..++++++|++.++...++.|.+||.. ++.+..+...
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~ 272 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIP 272 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcC
Confidence 55 4555678999999864 33222111 000111 1246789999999988888778999999974 4433332110
Q ss_pred c--CCccceEEEEEECCCCCeEEEeECC
Q 024451 227 Q--NSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 227 ~--~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
. ..|...+.+++|+|+++.|..++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCccccccCcceEEECCCCCEEEEEeCc
Confidence 0 0122257889999998777655555
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=2.6e-13 Score=107.28 Aligned_cols=209 Identities=12% Similarity=0.162 Sum_probs=144.6
Q ss_pred cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEecC-CCeEE
Q 024451 43 SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSC-DSTAR 120 (267)
Q Consensus 43 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~ 120 (267)
.++-....++++.|++ .++++...++.|++||... .....+... ...++...+..+++.+++++++++... ++.|+
T Consensus 26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCC-CEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 3555678889999875 4677778899999999874 334443211 112344567888886556777776643 78999
Q ss_pred EEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 121 LWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 121 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
+||.. ......+. .+...+..++++|+++.+++...++.|.+||.. ++....+.. ......+..+++++++++
T Consensus 104 ~~d~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 104 IYNQY--GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---SKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EECTT--SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---TTTCSSEEEEEECSSSEE
T ss_pred EECCC--CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC---CCccCCcEEEEECCCCCE
Confidence 99943 23344443 234568899999999988888888999999965 443333221 112235789999999998
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-cEEEEecCc
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKIWAFGG 262 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-~i~~w~~~~ 262 (267)
+++...++.|++||.. .+.+..+.. ..+......++++|+|+++++...++ .|.+|+..+
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~--~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGG--EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESC--TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEcc--CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence 8888889999999964 333333321 12234678999999999999888776 999998655
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=3e-15 Score=133.85 Aligned_cols=208 Identities=9% Similarity=0.061 Sum_probs=135.6
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---------Ce
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------ST 118 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------~~ 118 (267)
...+++|+|++ ++++++ |++|++||+.++.....+.......+......+.++|. ++.++.++.+ +.
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccceE
Confidence 35578999976 677775 99999999999887666543322222223345778864 5666666655 56
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC----C---------C
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN----E---------I 185 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~---------~ 185 (267)
+.+||+.... ...+..|...+...+|+|+|+.+|.+ .|+.|.+||+.+++............ . .
T Consensus 94 ~~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 7799987432 34466677789999999999999887 46899999998876443211110000 0 0
Q ss_pred CcEEEEEEccCCCEEEEEEeCC------------------------------------eEEEEeCCc---cc--eeeecc
Q 024451 186 PHVTSIAFSISGRLLFAGYSNG------------------------------------DCYVWDTLL---AK--VVLNLG 224 (267)
Q Consensus 186 ~~v~~~~~s~~~~~l~~g~~dg------------------------------------~i~i~d~~~---~~--~~~~~~ 224 (267)
.....+.|||||+.|+.+..|. .|++||+.. ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123588999999998875331 477788776 52 111111
Q ss_pred c--ccCCccceEEEEEECCCCCeEEEeEC----CCcEEEEecCc
Q 024451 225 S--LQNSHEGRITCLGLSADGSALCTGSW----DTNLKIWAFGG 262 (267)
Q Consensus 225 ~--~~~~~~~~v~~~~~~p~~~~l~sgs~----dg~i~~w~~~~ 262 (267)
. ....|...+..++|+|||+.++.... +..|.+|++.+
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 0 00136778999999999997665433 33688888643
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=3.7e-15 Score=123.03 Aligned_cols=229 Identities=13% Similarity=0.012 Sum_probs=142.2
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE-------------------EEEecCCCeeEE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-------------------CQYVPDEDTHLI 63 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~ 63 (267)
+.|+|+|+.|+.++.++.|.+||+.... .......+...... +.++|++. .++
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~ 157 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLE-------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEK 157 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCC-------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-cee
Confidence 5689999999999999999999976421 11122222221111 23456543 333
Q ss_pred Ee-----eCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceE
Q 024451 64 TS-----SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVR 132 (267)
Q Consensus 64 s~-----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~ 132 (267)
.+ ..+..|.+||+.++...... .+...+..+.|+|.+++.++..+.+ ..|.+|++.. . ...
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~-~~~ 229 (396)
T 3c5m_A 158 FAEFYHTNPTCRLIKVDIETGELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-S-NVR 229 (396)
T ss_dssp HHHHHHTCCCEEEEEEETTTCCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-C-CCE
T ss_pred eeeeccCCCcceEEEEECCCCcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-C-cee
Confidence 32 45678999999887654443 2345577888887334444443322 4688888753 2 223
Q ss_pred Eeecc--ccceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEE
Q 024451 133 TFHGH--EGDVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGY 204 (267)
Q Consensus 133 ~~~~~--~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~ 204 (267)
.+..+ ...+..+.|+|+|+.|+..+.+ +.|.+||+.+++..... . . . ... ..|+| ++++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~-~-~----~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-V-M-P----PCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-E-C-C----SEE-EEEECSSSSEEEEEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-e-C-C----CCC-CCccCCCCceEEEec
Confidence 33323 2357789999999987776543 44999999887643321 1 1 1 123 78999 999888754
Q ss_pred ----------------eCCeEEEEeCCccceeeecccccCCccc-----------eEEEEEECCCCCeEEEeEC-CCcEE
Q 024451 205 ----------------SNGDCYVWDTLLAKVVLNLGSLQNSHEG-----------RITCLGLSADGSALCTGSW-DTNLK 256 (267)
Q Consensus 205 ----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~sgs~-dg~i~ 256 (267)
.++.|++||...++... + ..+.. .+..++|+|+|+.|+.++. ++...
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-L----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCE-E----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEE-c----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 24789999987654321 1 11221 2456789999999887665 66777
Q ss_pred EEec
Q 024451 257 IWAF 260 (267)
Q Consensus 257 ~w~~ 260 (267)
||.+
T Consensus 377 l~~~ 380 (396)
T 3c5m_A 377 IYIA 380 (396)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=2.9e-14 Score=125.76 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=144.0
Q ss_pred CCCCCe-EEEccC-CCeEEEeecCCCCCCCCCCcccccccC-----CeeeEEEEEEecCCCeeEEEeeCC----------
Q 024451 6 SPTGQS-VACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDEDTHLITSSGD---------- 68 (267)
Q Consensus 6 ~~~g~~-l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d---------- 68 (267)
+|||+. |+.++. +..|.+++...+. .+ ..+.+.. |...+..++|+|++. .|++++.|
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g--~~---~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPG--GA---VPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTT--CC---CCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCC--CC---CCEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCce
Confidence 399988 766554 4555555543000 01 1122333 678889999999875 67777766
Q ss_pred CeEEEEeCCC------CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC--------CeEEEEeCCCcc---cce
Q 024451 69 QTCVLWDITT------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVAS---RAV 131 (267)
Q Consensus 69 ~~v~iwd~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~---~~~ 131 (267)
..|++||+.+ +...... ..+...+..+.|+|. ++.++..+.+ ..|.+||+.... ...
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELS-----DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESS-----CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEE-----ecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 5899999987 4433221 023345667888875 5556655533 379999987222 233
Q ss_pred EEeeccccceeEEEEecCCCEEEEeeCCC--cEEEEeCCCCeeeEEEEeecCCCC----CCcEEEEEEccCCCEEEEEEe
Q 024451 132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGENE----IPHVTSIAFSISGRLLFAGYS 205 (267)
Q Consensus 132 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~g~~ 205 (267)
....+|...+..+.|+|+|++++++..|+ .|.+||+.+++... +...+.... ...+..++|++++.+++++..
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 33344567899999999999888888888 56666665554322 111111000 011457889999999999988
Q ss_pred CCeEEEE--eCCccceeeecccccCCccceEEEE-EECCCCCeEEEeECCCcEEEEec
Q 024451 206 NGDCYVW--DTLLAKVVLNLGSLQNSHEGRITCL-GLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 206 dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.++|| |...++ +..+ ..|.+.+..+ +++++.-++++++.+....+|.+
T Consensus 314 -~~~~l~~~d~~~~~-~~~l----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 314 -GAAVLGILDPESGE-LVDA----AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp -SSCEEEEEETTTTE-EEEC----CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred -CccEEEEEECCCCc-EEEe----cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 988888 554443 2222 3456667766 55544445556677766677754
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=6.8e-15 Score=121.43 Aligned_cols=234 Identities=12% Similarity=0.016 Sum_probs=140.9
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
..+|+|+|++|+.+..+ ..+.+||+.... ......++......+.|+|++ +.|+.++.++.|++||+.+
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-------~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-------AVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-------EEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTT
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCc-------EEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCC
Confidence 35799999998776543 367777765421 122222232223336789976 4788888888999999988
Q ss_pred CeeEEEeCCccccCCccceE---EE----------------EEeCCCCeEEEEe-----cCCCeEEEEeCCCcccceEEe
Q 024451 79 GLRTSVFGGEFQSGHTADVL---SV----------------SISGSNSRMFVSG-----SCDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~---~~----------------~~~~~~~~~~~s~-----~~d~~i~iwd~~~~~~~~~~~ 134 (267)
+........ +..... .+ .++|. ++.++.. ..+..|.+||+.... ...+
T Consensus 112 ~~~~~~~~~-----~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~ 183 (396)
T 3c5m_A 112 LEEQVIYTV-----DEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETGE--LEVI 183 (396)
T ss_dssp CCEEEEEEC-----CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTCC--EEEE
T ss_pred CCcEEEEec-----ccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCCc--EEee
Confidence 765444321 111111 11 12322 2222221 355689999986432 3333
Q ss_pred eccccceeEEEEec-CCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-
Q 024451 135 HGHEGDVNTVKFFP-DGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 206 (267)
Q Consensus 135 ~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d- 206 (267)
..+...+..+.|+| +++.++..+.+ ..|.+||+..++.. .+.. . .....+..+.|+|+|+.|+..+.+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-~--~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-H--AEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-C--CTTEEEEEEEECTTSSCEEEEEEET
T ss_pred ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-c--CCCccccceEECCCCCEEEEEecCC
Confidence 35666788999999 78877665543 46888888655422 1111 1 011247788999999987776554
Q ss_pred ----CeEEEEeCCccceeeecccccCCccceEEEEEECC-CCCeEEEeE----------------CCCcEEEEecCc
Q 024451 207 ----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGS----------------WDTNLKIWAFGG 262 (267)
Q Consensus 207 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs----------------~dg~i~~w~~~~ 262 (267)
+.|++||+..++..... . ..+ .. +.|+| +|++++.++ .+..|.+|++.+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~-~----~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVM-V----MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEE-E----CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred CCccceEEEEECCCCCeEEee-e----CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 44999998765532211 1 111 22 88999 999988765 246789998643
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=1.7e-13 Score=121.98 Aligned_cols=240 Identities=11% Similarity=0.014 Sum_probs=151.7
Q ss_pred ceeeCCCCCeEEEccCCC-----eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe------
Q 024451 2 TCAFSPTGQSVACGGLDS-----VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT------ 70 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~-----~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------ 70 (267)
..+|+|||++|+.+..++ +|++||+.... ..... .....+..++|+|++. .|+.++.++.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~-~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDV-LERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEE-EEEECSCCEEECTTSS-EEEEEECCCCSSCCSS
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCccc-ccCcccceEEEEeCCC-EEEEEEECCccccccc
Confidence 357999999998765543 89999986532 11111 1122356789999875 5666666655
Q ss_pred ----------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----CCeEEEEeCCC------c
Q 024451 71 ----------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRV------A 127 (267)
Q Consensus 71 ----------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----d~~i~iwd~~~------~ 127 (267)
|++|++.++.. ..++.. ..+...+..+.+++.+ +.++..+. +..|.+||+.. .
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999987652 222221 1244456788898755 44444332 56899999864 2
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
......+..+...+.. .|+|+|+.|+..+.+ ..|.+||+.+++. ...+..+. ....+..++|++++.+++
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH---EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEEEETTTEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC---CCCeEEEEEEEcCCEEEE
Confidence 2234555556555544 588888887766543 3699999987642 22232221 112477888887777888
Q ss_pred EEEeCC--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe-E---CCCcEEEEecCc
Q 024451 202 AGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-S---WDTNLKIWAFGG 262 (267)
Q Consensus 202 ~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg-s---~dg~i~~w~~~~ 262 (267)
+...++ .|++||...++....+ ..+.+.+..++++|+++.++.. + ..+++.+|++..
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIF----PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEE----CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEECCEEEEEEEECCCCCEEEec----CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888887 4666776555543333 2346678899999998766532 2 356788888743
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=7.1e-13 Score=107.15 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=153.4
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
+++++++...+++|.+||..... ....+. .......+++++++ ...++...++.|.+||..++.....+..
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~-------~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFK-------EVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCC-------EEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEcCCCEEEEEECcccE-------EEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 45667777778999999986421 223332 23456778888865 5555554899999999998876544432
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-------
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD------- 159 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 159 (267)
....+.......+++ .+++++++.. .++.|.++|.... +....+.. ......+.++|+|++++++..+
T Consensus 124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD-KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccc
Confidence 110111113344555 3566666654 4889999998753 33444432 2345788999999988777654
Q ss_pred ---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 160 ---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 160 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
+.|.++|..+++....+.... ......++|+|+++.+.+... .|++||..+.+... .... ..+......
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~----g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~-~~~~~~p~g 271 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKL----GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFL-EFRDTKYYG 271 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCT----TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSB-CCCSSCEEE
T ss_pred cCCceEEEEECCCCeEEEEEecCC----CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeee-cCCCCceEE
Confidence 789999998877554432111 124689999999999888654 89999987766431 1111 112356788
Q ss_pred EEECC-CCCeEEEe----ECCCcEEEEecCc
Q 024451 237 LGLSA-DGSALCTG----SWDTNLKIWAFGG 262 (267)
Q Consensus 237 ~~~~p-~~~~l~sg----s~dg~i~~w~~~~ 262 (267)
++++| +++++++. ..++.|.+|+..+
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence 99999 56666666 5789999998764
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=4e-13 Score=108.52 Aligned_cols=236 Identities=12% Similarity=0.012 Sum_probs=157.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|++++..++..+.++.++.|... ....+.++...+.+++|.|++ .+++++..++.|.+||.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred eeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE
Confidence 56789988888888889999999321 223344565667889999875 4666788899999999987764
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC----CeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD----STARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d----~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 155 (267)
..... .+...+..+++++. ++++++...+ +.|.+||..... ....+. .+...+..+.++|+++.+++
T Consensus 79 ~~~~~-----~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 151 (333)
T 2dg1_A 79 KRPFV-----SHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFT 151 (333)
T ss_dssp EEEEE-----CSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred EEEee-----CCCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEE
Confidence 43321 23456888988864 5677766655 689999976432 221222 23456889999999988876
Q ss_pred eeC------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeCCc-cceeeecc---
Q 024451 156 GSD------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLL-AKVVLNLG--- 224 (267)
Q Consensus 156 ~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~~~-~~~~~~~~--- 224 (267)
... .+.|..+|..+++.. .+... ...+..++|+|+++.++. ...++.|++||... ++....+.
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVT-PIIQN-----ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEE-EEEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred eccccccCCCceEEEEeCCCCEEE-EeecC-----CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 654 245666665544332 22211 123688999999986654 45678999999753 22111100
Q ss_pred -cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 225 -SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 225 -~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.....+ ..+..++++++|+++++...++.|.+|+..+
T Consensus 226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 000112 3678899999999988888889999998754
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=2.5e-13 Score=110.25 Aligned_cols=219 Identities=11% Similarity=0.117 Sum_probs=135.7
Q ss_pred ceeeCCCCCeEEEccCC---Ce--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---------
Q 024451 2 TCAFSPTGQSVACGGLD---SV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--------- 67 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--------- 67 (267)
..+|+|||+.|+.++.+ +. |.+|++... .... +..+.. +..+.|+|++. .|+.++.
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-------~~~~-l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETL-------SSKK-ILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFI 132 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-------EEEE-EEEESE-EEEEEECTTSS-EEEEEEECCCC-----
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCC-------ceEE-EEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcE
Confidence 36899999999987754 34 556665431 1222 222233 88999999875 4555442
Q ss_pred ------------------CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-------eEEEE
Q 024451 68 ------------------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-------TARLW 122 (267)
Q Consensus 68 ------------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-------~i~iw 122 (267)
...|.+||+.++.....+. . . .+..+.|++. + +++++..+. ...+|
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~-----~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE-----K-P-RFSSGIWHRD-K-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTTEEEEEEE-----E-E-TTCEEEEETT-E-EEEEEECCCSSCCSSCCEEEE
T ss_pred EEcccceeecCcccccCccceEEEEECCCCeEEeeec-----C-C-CcccccCCCC-e-EEEEEecccccccccccccEE
Confidence 2578999998876523321 1 1 4667888864 4 666665432 34455
Q ss_pred eCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC--------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEE-EEE
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTS-IAF 193 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 193 (267)
.+. ... ...+..+ ..+..+ +|+|+.++..+.+ ..|.+|| +++.. .+. ......+.. +.|
T Consensus 204 ~~d-~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~----~~~~~~~~~~~~~ 271 (347)
T 2gop_A 204 IWE-DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GIL----DEVDRGVGQAKIK 271 (347)
T ss_dssp EEE-TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESS----TTCCSEEEEEEEE
T ss_pred EeC-CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-ecc----ccCCcccCCccEE
Confidence 443 222 3334334 444444 8999988877754 3677777 44322 111 112235665 889
Q ss_pred ccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE-EEEecC
Q 024451 194 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL-KIWAFG 261 (267)
Q Consensus 194 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i-~~w~~~ 261 (267)
+ ++ +++++..++.++|| +..++.. .. ..+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 272 s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~----~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 272 D-GK-VYFTLFEEGSVNLY-IWDGEIK-PI----AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp T-TE-EEEEEEETTEEEEE-EESSSEE-EE----ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred c-Cc-EEEEEecCCcEEEE-EcCCceE-EE----ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 88 88899999999999 7633322 11 13467899999999 677777777765 788653
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=2.5e-12 Score=102.82 Aligned_cols=243 Identities=9% Similarity=0.086 Sum_probs=151.7
Q ss_pred ceeeCCCCCeEEE-------ccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451 2 TCAFSPTGQSVAC-------GGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~g~~l~~-------~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~ 72 (267)
.++|+++|+++++ ...++.|.+||..... ..... ...++...+..+.+.++++.+++ ++.++.|.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~ 95 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----KTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLL 95 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----EEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEE
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-----EEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEE
Confidence 4678999998888 6788999999864321 11000 01235567889999886334344 44445788
Q ss_pred EEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCC---------------CeEEEEeCCCcccceEEeec
Q 024451 73 LWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---------------STARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 73 iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------------~~i~iwd~~~~~~~~~~~~~ 136 (267)
+||.+ +..... .. .........+..+.+++ +++++++...+ +.|..++.. .. ...+..
T Consensus 96 ~~d~~-g~~~~~~~~-~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~ 169 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKK-DSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT 169 (314)
T ss_dssp EEETT-SCEEECCSB-CTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred EEeCC-CCEEEEEec-cCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence 99988 544322 21 11111223467888886 45666666544 567777754 22 222333
Q ss_pred cccceeEEEEe----cCCCEEE-EeeCCCcEEEEeCC-CCeeeEE-EEeecCCCCC-CcEEEEEEccCCCEEEEEEeCCe
Q 024451 137 HEGDVNTVKFF----PDGNRFG-TGSDDGTCRLFDIR-TGHQLQV-YYQQHGENEI-PHVTSIAFSISGRLLFAGYSNGD 208 (267)
Q Consensus 137 ~~~~i~~~~~~----~~~~~l~-~~~~d~~i~iwd~~-~~~~~~~-~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~ 208 (267)
+......++++ |+++.+. +...++.|.+||.+ +++.... ..... .... ..+..++++++|++.++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 34456789999 9986554 44568899999986 3432111 11111 1111 34688999999998888888899
Q ss_pred EEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE-EeECCCcEEEEecC
Q 024451 209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAFG 261 (267)
Q Consensus 209 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~dg~i~~w~~~ 261 (267)
|..||..+++..... ..+...+.+++|+|+|+.|. +...++.|..|+..
T Consensus 249 i~~~d~~~g~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRI----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECTTCBSCSEEE----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEcCCCCcEeEEE----eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 999998755543322 12345789999999999554 44556788888764
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=5.4e-13 Score=105.17 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=151.1
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
..++.|++++.|+.|.+||.+.. +....+..+. ..++++.+.|++ ++++ +.++.|..||. +++.+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK-------EIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT-------EEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCC-------eEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEE
Confidence 34788999999999999997442 1334444443 457788899976 4566 45788999999 67766655
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEee------ccccceeEEEEecCCCEEEEeeC
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
.. +....+.++.+.+ +++++++.+. ++.+..+|.. .+.+..+. .+......+.+.++|+++++...
T Consensus 72 ~~----~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 72 AA----PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp EC----CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred cC----CCCccccccEECC-CCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 42 2223566777765 5667777665 6777777753 33333332 11123456678899999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc--cCCccceEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL--QNSHEGRITC 236 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~ 236 (267)
++.|..||.+ ++.+..+... ..+.++...++++.++++..++.|..+|..+++.+..+... .......+..
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred CCEEEEECCC-CCEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 9999999987 8776554321 12455677899999999988889999999888887665321 1111234788
Q ss_pred EEECCCCCeEEEeE
Q 024451 237 LGLSADGSALCTGS 250 (267)
Q Consensus 237 ~~~~p~~~~l~sgs 250 (267)
++..++|+++++.+
T Consensus 218 ~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 218 LFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEEEE
T ss_pred ceEcCCCCEEEEec
Confidence 88999999988764
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=1e-12 Score=106.21 Aligned_cols=207 Identities=15% Similarity=0.134 Sum_probs=141.7
Q ss_pred eeeEEEEEEecCCCeeEEEeeCC------------------------CeEEEEeCCCCeeEEEeCCccccCCccceEEEE
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGD------------------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~ 101 (267)
-+.+.++++.|++ +++++.+.+ ++|.+||..++.....+. .++-.....++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----KNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----TTTCSSEEEEE
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----CCccCCceEEE
Confidence 4668899999976 466666666 479999998877654442 23344577888
Q ss_pred EeCCCCeEEEEecCCCeEEEEeCCCcccceEEe---------eccccceeEEEEec-CCCEEEEee-CCCcEEEEeCCCC
Q 024451 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------HGHEGDVNTVKFFP-DGNRFGTGS-DDGTCRLFDIRTG 170 (267)
Q Consensus 102 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~ 170 (267)
+++ +++++++...++.|++|+.......+..+ .++......++++| +++.+++.+ .++.|++||. ++
T Consensus 98 ~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g 175 (329)
T 3fvz_A 98 IDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SG 175 (329)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TS
T ss_pred ECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CC
Confidence 885 55688888889999999975321133333 23334578999999 788888886 6999999994 45
Q ss_pred eeeEEEEeecC-----CCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC---
Q 024451 171 HQLQVYYQQHG-----ENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA--- 241 (267)
Q Consensus 171 ~~~~~~~~~~~-----~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--- 241 (267)
+.+..+..... .........++++|+ +.++++...++.|++||..+++.+..+.. ..+...+..++++|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFL 253 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEE
Confidence 54443322111 011234789999998 77777777889999999876666554422 23556788999999
Q ss_pred ---CCCeEEEeECCCcEEEEecC
Q 024451 242 ---DGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 242 ---~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|+..++.+.+..|++|++.
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETT
T ss_pred EEeCCCEEeccCCCcEEEEEEcC
Confidence 44444444445689999853
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=3.4e-11 Score=95.33 Aligned_cols=237 Identities=9% Similarity=0.017 Sum_probs=158.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++++++|+++++...++.|.+||.. .. .. ......+...+.++.+.+++ .+.++...++.|..||......
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-----~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~ 90 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GK-----IT-EYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKKGIIK 90 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CC-----EE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEE
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CC-----eE-EecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcEE
Confidence 46788999988887778899999865 11 11 11112244668889998865 4555556678899999863322
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.+.. ......+..+.+.+ +++++++...++.|..||.. ..........+...+..+.+.++++..++...++.
T Consensus 91 --~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 91 --EYTL---PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp --EEEC---SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred --EEeC---CCcCCCceeeEECC-CCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 2211 11334577888875 46777777778899999873 22211122223456889999999988887777889
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|..||. +++... +.. ......+..+++++++.+.++...++.|..||. .++... .. . ..+...+.+++++|
T Consensus 164 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-~-~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 164 IGRITE-SGDITE-FKI---PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK-I-PTPNARPHAITAGA 234 (299)
T ss_dssp EEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-C-SSTTCCEEEEEECS
T ss_pred EEEEcC-CCcEEE-eeC---CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE-C-CCCCCCceeEEECC
Confidence 999998 554332 211 112235789999999998777767889999998 444321 11 1 22445688999999
Q ss_pred CCCeEEEeECCCcEEEEecCc
Q 024451 242 DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+|+++++...++.|..|+..+
T Consensus 235 ~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp TTCEEEEETTTTEEEEEETTT
T ss_pred CCCEEEeccCCceEEEECCCC
Confidence 999777665778899998654
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=6.6e-13 Score=117.94 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=147.7
Q ss_pred ceeeCCCCCeEE-----EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe------
Q 024451 2 TCAFSPTGQSVA-----CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT------ 70 (267)
Q Consensus 2 ~~~~~~~g~~l~-----~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------ 70 (267)
..+|+|||++|+ .|+.+.+|++||+...... ....+.+.+ ...+.|+|++. .|+.++.|..
T Consensus 125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~-----~~~~~~~~~--~~~~~wspDg~-~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS-----KVDVIEGGK--YATPKWTPDSK-GFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC-----SSCCBSCCT--TCCCEECTTSS-EEEEEECCCCTTSCGG
T ss_pred EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc-----CCcccCccc--ccceEEecCCC-EEEEEEecCCCCCccc
Confidence 357999999999 6777889999998753211 011111111 15688999875 6777777765
Q ss_pred -------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC----eEEEEeCCCcccceEEeecc
Q 024451 71 -------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWDTRVASRAVRTFHGH 137 (267)
Q Consensus 71 -------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~----~i~iwd~~~~~~~~~~~~~~ 137 (267)
|++|++.++.. ..++.. ..+...+..+.+++.+. .++..+.++ .|.+|+... .....+..+
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~---~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~ 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHER---TGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGE--KDFRLLVKG 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECC---CCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTC--SSCEEEEEC
T ss_pred cCCCCCEEEEEECCCCchhceEEEec---CCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCC--CceEEeecC
Confidence 99999988752 233321 23445677888987654 444444443 566666532 234455556
Q ss_pred ccceeEEEEecCCCEEEEeeC----CCcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451 138 EGDVNTVKFFPDGNRFGTGSD----DGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 211 (267)
...+....+ ++++ ++..+. ++.|.+||+.+++. ...+.... ....+..++|+ ++.++++...|+..++
T Consensus 271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---SSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---SSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---CCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 556666666 5666 544443 57899999977642 12222211 12346778887 6778888888988777
Q ss_pred EeCC-ccceeeecccccCCccceEEEEEECCCCCeEE----EeECCCcEEEEecCc
Q 024451 212 WDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALC----TGSWDTNLKIWAFGG 262 (267)
Q Consensus 212 ~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~----sgs~dg~i~~w~~~~ 262 (267)
|... .++....+ ...+.+.+..++++|+++.++ +....++|.+|++.+
T Consensus 345 ~~~~~~g~~~~~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 345 RVATLKGKPVRTV---QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEEETTCCEEEEC---CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEeCCCCeeEEe---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 7543 23322222 122356788889999998776 333357899998754
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=3.1e-11 Score=104.22 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=157.7
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe----cCCCeeEEEeeCCCeEEEEeCCC
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV----PDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+.|+|||+++.+++.|+.|.+||+...+ ......+..... ...+.|+ |++...+++...+++|.++|..+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t-----~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKE-----PTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSS-----CCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCC-----CcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 5799999999999999999999984111 112333333222 4578899 57665555556679999999998
Q ss_pred CeeEEEeCCccc-----cCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeeccccceeEEEEecCCC
Q 024451 79 GLRTSVFGGEFQ-----SGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 79 ~~~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~ 151 (267)
.+.+..+..... ..| ...+..+..++.....+++...+|.|.++|....... +..+ ......+.+.|+|+++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR 354 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence 877665542110 012 2256677777665666777778899999997643211 2222 2234567889999999
Q ss_pred EEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEE-eCCeEEEEeCCc-------cceee
Q 024451 152 RFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGY-SNGDCYVWDTLL-------AKVVL 221 (267)
Q Consensus 152 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~-~dg~i~i~d~~~-------~~~~~ 221 (267)
+++++. .+++|.++|+.+++....+.......+...-..+ ++|++..+ +++. .++.|.++|... .+.+.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 886655 6789999999998766544220111111111122 57875444 4443 468999999876 34443
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeEC-------CCcEEEEecCce
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSW-------DTNLKIWAFGGY 263 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-------dg~i~~w~~~~~ 263 (267)
.+. ....+. ..++++|++++|..... .++|.++|+..+
T Consensus 434 ~i~---~~g~g~-~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 434 SFP---ALGGGS-LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEE---CSCSCC-CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEe---cCCCCC-EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 331 111121 33778999999887553 359999998766
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=8.6e-12 Score=101.14 Aligned_cols=211 Identities=11% Similarity=0.129 Sum_probs=133.6
Q ss_pred CCCeEEEcc---------CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---C--eEEE
Q 024451 8 TGQSVACGG---------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---Q--TCVL 73 (267)
Q Consensus 8 ~g~~l~~~~---------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~--~v~i 73 (267)
||+.++... .++.|.+|++.... . +.+ ..+..+.|+|++. +|+.++.+ + .|.+
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~-~~l----~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNA-------R-RFI----ENATMPRISPDGK-KIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-------E-EEE----ESCEEEEECTTSS-EEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCc-------e-EEc----ccCCCeEECCCCC-EEEEEEeccCCCcceEEE
Confidence 787777642 36778888876421 1 122 4578899999875 56655433 3 4778
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------------------------CCeEEEEeCCC
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------------------------DSTARLWDTRV 126 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------------------------d~~i~iwd~~~ 126 (267)
||+.++....... +.. +..+.|+|.+. .++.++. ...|.+||+..
T Consensus 90 ~~~~~g~~~~l~~------~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 90 ADLETLSSKKILE------AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EETTTTEEEEEEE------ESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred EECCCCceEEEEc------CCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 8888776544432 123 78889987554 4444432 25688999864
Q ss_pred cccceEEeeccccceeEEEEecCCCEEEEeeCCC-------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
. .....+.. . .+..+.|+|+| .++++..+. ...+|.+++++. ..+... ..+..+ +|+|+.
T Consensus 162 ~-~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~------~~~~~~--spdg~~ 228 (347)
T 2gop_A 162 E-EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK------VSFYAV--DSDGER 228 (347)
T ss_dssp T-EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE------ESEEEE--EECSSC
T ss_pred C-eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC------cceeeE--CCCCCE
Confidence 3 23244443 3 78899999999 777776542 445555544433 333221 123443 899998
Q ss_pred EEEEEeC--------CeEEEEeCCccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEEecC
Q 024451 200 LFAGYSN--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 200 l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|+.++.+ ..|++|| .++.. .+ ...+...+.. +.|+ ++ ++++++.|+.++|| +.
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l---~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GKEVM-GI---LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SSCEE-ES---STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred EEEEEccccCCccccceEEEEC--CCceE-ec---cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 8877643 4788888 33322 11 1345667886 9999 88 99999999999999 74
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=2e-10 Score=90.81 Aligned_cols=234 Identities=5% Similarity=-0.077 Sum_probs=151.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++++++|+++++...++.|..|+... .... ..+......+..+.+.|++ .+.++...++.|..||. ++..
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKKG------IIKE-YTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTS------CEEE-EECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCCC------cEEE-EeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE
Confidence 467889999888888788899998642 1111 1122234567888888865 45666666889999998 4433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..... ......+..+++.+ +++++++...++.|..||. ...........+...+..+.++++++..++...++.
T Consensus 132 ~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 132 REYEL----PNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp EEEEC----SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EEecC----CCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence 22211 11234567888875 4577777777789999987 322111112233456789999999998777777889
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|.+||. +++.. .+.. ......+..++++++|+..++...++.|..||.. ++ +.... . ..+...+.++++ +
T Consensus 206 i~~~~~-~g~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~-~-~~~~~~~~~i~~-~ 275 (299)
T 2z2n_A 206 IGRITT-SGEIT-EFKI---PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYP-I-QIKSAEPHGICF-D 275 (299)
T ss_dssp EEEECT-TCCEE-EEEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEE-C-SSSSCCEEEEEE-C
T ss_pred EEEECC-CCcEE-EEEC---CCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEe-C-CCCCCccceEEe-c
Confidence 999998 55432 2211 1123457899999999977776678899999973 32 22221 1 233456889999 9
Q ss_pred CCCeEEEeECCCcEEEEecC
Q 024451 242 DGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|+++++.+ .+.+..++..
T Consensus 276 ~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 276 GETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp SSCEEEEET-TTEEEEEEEC
T ss_pred CCCEEEEec-CCcEEEEEcC
Confidence 998887655 4555555543
No 190
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=1.5e-11 Score=100.76 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=134.5
Q ss_pred ceeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
.++|+|+|++|+++.. +++|.+||+.... .... +. +.+ ...+.+.|.+...+++.+.|+.+.+|+...
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-------~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGD-------YVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCc-------EEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 3689999999988764 6899999986521 2222 21 111 122456776656788899999999998865
Q ss_pred -CeeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee--c----cc----cceeEEE
Q 024451 79 -GLRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH--G----HE----GDVNTVK 145 (267)
Q Consensus 79 -~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~--~----~~----~~i~~~~ 145 (267)
+........ .........+ .+...+.. ..++..+.++.+.++|+...... ...+. . +. .....++
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred CCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence 332211100 0000111111 11112222 23444567889999998532211 11111 0 00 1122378
Q ss_pred EecCCCEEEEeeC-----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 146 FFPDGNRFGTGSD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 146 ~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
|+|+++.+.++.. .+.|.+||+.+++.+..+... . +..++|+|+|++|+++.. +.|.+||.
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~------~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR------D-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT------T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC------C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 9999887766543 348999999998876654321 1 688999999999998876 99999999
Q ss_pred Ccc--ceeeecccccCCccceEEEEEECCCCC
Q 024451 215 LLA--KVVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 215 ~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
.++ +.+..+ ..+...-..++++|+|+
T Consensus 333 ~t~~l~~~~~i----~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPKLLRTI----EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCEEEEEE----TTSCSSEEEEEECCCSC
T ss_pred CCCcceeeEEe----ccCCCCcEEEEecCCCC
Confidence 988 766543 12344557789999985
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=3.8e-10 Score=89.25 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=156.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++++.++|++.++...++.|.+||.. .. ... ..+..+...+..+.+.+++ .+.++...++.|..||.. +..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-----~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GR-----IKE-FEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SC-----EEE-EECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-Cc-----eEE-EECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence 46788999999988888999999865 11 111 1122334567888888865 455555567889999987 433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.. +.. ......+..+.+.+ +++++++...++.|..++.. .......+......+..+.+.++++..++...++.
T Consensus 95 ~~-~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 95 TE-YPL---PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp EE-EEC---SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EE-ecC---CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 22 211 11234577888875 56677777778889999875 32211122223456789999999997777767889
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|..+|. +++... +.. ......+..+++++++.+.++....+.|..||. .++..... . ..+...+.+++++|
T Consensus 169 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~--~-~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 169 IGRITN-TGKLEE-YPL---PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD--I-PTPNARPHAITAGK 239 (300)
T ss_dssp EEEECT-TCCEEE-EEC---SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE--C-SSTTCCEEEEEECS
T ss_pred EEEECC-CCcEEE-eeC---CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE--C-CCCCCCceEEEECC
Confidence 999998 444332 211 122245789999999988777767788999997 33322211 1 12345678999999
Q ss_pred CCCeEEEeECCCcEEEEecCc
Q 024451 242 DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+|++.++...++.|..|+..+
T Consensus 240 ~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp TTCEEEEETTTTEEEEECTTS
T ss_pred CCCEEEeccCCCeEEEECCCC
Confidence 999777766678898887644
No 192
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=8.2e-13 Score=108.23 Aligned_cols=179 Identities=11% Similarity=0.032 Sum_probs=122.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
.+++++...++++|+.++ +.+|++.... +........ ....+.. |+.++| ++ .+|+.+ .++.|++||+.
T Consensus 42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESS
T ss_pred EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEch
Confidence 367889999999999985 6669865311 000001111 1224556 999999 44 567777 88999999998
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
+....... ..|+..+.++.+.+++ ++++..||.|.+||++.... . . +...|.+++|+|+| ++.|.
T Consensus 115 sl~~~~~~-----~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 115 ELSEFRTV-----TSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKST-K-Q---LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp STTCEEEE-----EECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCE-E-E---EEESEEEEEECSSE--EEEEE
T ss_pred hhhccCcc-----ceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcc-c-c---ccCCceEEEEcCCc--eEEEE
Confidence 65433222 2355667787776542 78889999999999974332 2 2 44679999999998 67789
Q ss_pred CCCcEEEEeCCCCee--eEEEEeec--C--CCCCCcEEEEEEccCCCEEEE
Q 024451 158 DDGTCRLFDIRTGHQ--LQVYYQQH--G--ENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~--~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~~ 202 (267)
.||++++|+.+.... ...+.... . ..+...|.+++|.+++.++++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999999877653 22331110 0 013457999999999988876
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.49 E-value=1.2e-11 Score=98.35 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=132.6
Q ss_pred ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i 121 (267)
+..+.....++.|.|++..+++++..++.|..||..++ ...+. .+...+..+.+++ +++++++...++.|.+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-----~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-----HPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-----SSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-----CCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 34455566789999987657888889999999999887 22231 2345678888886 4567777777789999
Q ss_pred EeCCCcccceEEeecc----ccceeEEEEecCCCEEEE----eeC-------------CCcEEEEeCCCCeeeEEEEeec
Q 024451 122 WDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGT----GSD-------------DGTCRLFDIRTGHQLQVYYQQH 180 (267)
Q Consensus 122 wd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~ 180 (267)
||..... ........ ...+..++++|+|+++++ ++. .+.|..++.. ++ ...+..
T Consensus 95 ~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~-- 169 (296)
T 3e5z_A 95 QREPGGE-WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR-- 169 (296)
T ss_dssp ECSTTCC-EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC--
T ss_pred EcCCCCc-EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec--
Confidence 9985433 22111111 234678999999998887 331 2345555544 33 222221
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.......++|+|+++.+++.+.++.|++||.. .++.......+ ..+......++++++|+++++. ++.|.+|+
T Consensus 170 ---~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 170 ---DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp ---CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred ---CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 12346889999999998777778999999975 23220111111 1234456679999999987766 78999998
Q ss_pred cCc
Q 024451 260 FGG 262 (267)
Q Consensus 260 ~~~ 262 (267)
..+
T Consensus 244 ~~g 246 (296)
T 3e5z_A 244 PDG 246 (296)
T ss_dssp TTS
T ss_pred CCC
Confidence 755
No 194
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=7.7e-13 Score=108.41 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=123.9
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE-----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEE
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iw 122 (267)
.++.+++++.. .++++|+.+ .+++|++........ +.......+.. |..+.| ++..++++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 47788898865 478888887 455698653220000 11001112445 889998 34566666 88999999
Q ss_pred eCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
|++... .......|...+.++.+.+. .++++..||.+.+||+++++... . ...|++++|||+| ++.
T Consensus 112 dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~--------~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 112 DLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L--------AQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp ESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E--------EESEEEEEECSSE--EEE
T ss_pred Echhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c--------cCCceEEEEcCCc--eEE
Confidence 987543 33445567777887776554 38889999999999998776532 1 1258999999999 788
Q ss_pred EEeCCeEEEEeCCccce--eeeccc---cc--CCccceEEEEEECCCCCeEEEeEC
Q 024451 203 GYSNGDCYVWDTLLAKV--VLNLGS---LQ--NSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~--~~~~~~---~~--~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
|..||.+++|+....+. ...+.. +. ..|...|.++.|.+++.+|++-..
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 99999999998655442 111211 11 136788999999999999987433
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=2.2e-11 Score=108.91 Aligned_cols=237 Identities=13% Similarity=0.010 Sum_probs=143.3
Q ss_pred eeeCCCCCeEEEccCC-----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe-------
Q 024451 3 CAFSPTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT------- 70 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------- 70 (267)
.+|+|||++|+.+..+ .+|++||+.... ... ...+...+..+.|+|+ . .|+.++.|+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-------~~~-~~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-------PLA-DELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-------EEE-EEEEEEESCCCEESTT-S-EEEEEECCCC-------
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCC-ccCCCceeccEEEECC-C-EEEEEEecCcccccccc
Confidence 5799999999886654 579999987532 111 1112222357889997 5 4555555543
Q ss_pred -------EEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----CCeEEEEeCCCcccc-eEEee
Q 024451 71 -------CVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----DSTARLWDTRVASRA-VRTFH 135 (267)
Q Consensus 71 -------v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----d~~i~iwd~~~~~~~-~~~~~ 135 (267)
|++|++.++.. ..++.. ..+...+..+.+++. ++.++..+. ...|.+||+...... ...+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~---~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFAT---PELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred cCCCCCEEEEEECCCCchhCEEEecc---CCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 88999977642 223321 123334778888865 444444443 348999998643212 44455
Q ss_pred ccccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 210 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 210 (267)
.+........ .|+++.|+..+.+ +.|.+||+.++. ....+.... ...+..+.++ ++.++++...++..+
T Consensus 314 ~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~----~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 314 PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES----KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC----SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC----CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 5554444443 4889888877754 459999988742 223332221 1236677777 566777788888776
Q ss_pred EEeCC-ccceeeecccccCCccceEEEEEECCCCCeEE----EeECCCcEEEEecCc
Q 024451 211 VWDTL-LAKVVLNLGSLQNSHEGRITCLGLSADGSALC----TGSWDTNLKIWAFGG 262 (267)
Q Consensus 211 i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~----sgs~dg~i~~w~~~~ 262 (267)
||... .++....+ ...+.+.+..++++|+++.|+ +....++|.+|++.+
T Consensus 388 l~~~~~~g~~~~~l---~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 388 VLAFDLDGKPAGAV---SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEETTSCEEEEC---BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEeCCCCceeec---cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 66543 23322222 122456788999999988666 223357888998754
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=1.9e-11 Score=96.35 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=133.5
Q ss_pred CeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc-
Q 024451 59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH- 137 (267)
Q Consensus 59 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~- 137 (267)
+++|++++.|+.|.+||.++++.+..+... ....+.++.+.+ ++++++ +.++.|..||. .. +.+..+..+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~ 75 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLE----KGWECNSVAATK-AGEILF--SYSKGAKMITR-DG-RELWNIAAPA 75 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECC----TTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS-CEEEEEECCT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCC----ccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC-CEEEEEcCCC
Confidence 368999999999999999999887766421 113456777775 566776 44678999997 33 455556543
Q ss_pred ccceeEEEEecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 138 EGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
...+.++.+.|+|+++++.+. ++.+..+|. +++.+..+..... .........+++.++|+++++...++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 346888999999999999887 778888886 5665544432111 0111123455678999999999999999999987
Q ss_pred ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
++.+..+.. .....++.+.|+|+++++++.++.|..++..
T Consensus 155 -G~~~w~~~~-----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 155 -GQLLNSVKL-----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp -SCEEEEEEC-----SSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred -CCEEEEEEC-----CCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 777766532 1234567778999999998888888887764
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=1e-11 Score=110.36 Aligned_cols=234 Identities=7% Similarity=-0.020 Sum_probs=142.1
Q ss_pred CCCCCeEEEccCCC---eEEEeecCCCCCCCCCCccc---ccccCCeeeEEEEEEecCCCeeEE-----EeeCCCeEEEE
Q 024451 6 SPTGQSVACGGLDS---VCSIFNLNSPTDKDGNLPVS---RMLSGHKGYVSCCQYVPDEDTHLI-----TSSGDQTCVLW 74 (267)
Q Consensus 6 ~~~g~~l~~~~~d~---~v~~w~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~-----s~~~d~~v~iw 74 (267)
+|+|++++....++ .-.+|....... . ...+. ..-.+|...+..++|+|++. +|+ .|+.+..|++|
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESG-Q-EKVLLDPNGWSKDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTS-C-CEEEECGGGSSSSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCC-C-cEEEEchHHhccCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEE
Confidence 47888877766544 355665432111 1 00111 11246777899999999875 555 44456789999
Q ss_pred eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-------------EEEEeCCCccc---ceEEeeccc
Q 024451 75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-------------ARLWDTRVASR---AVRTFHGHE 138 (267)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-------------i~iwd~~~~~~---~~~~~~~~~ 138 (267)
|+.++.... .... ... ....++|++. ++.|+.++.|.. |++|++..... .+.....|.
T Consensus 153 dl~tg~~~~--~~~~-~~~--~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 153 DVDSGEWSK--VDVI-EGG--KYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp ETTTCCBCS--SCCB-SCC--TTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred ECCCCCCcC--Cccc-Ccc--cccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 999876430 0011 111 1146778864 556677776655 99999875432 222222344
Q ss_pred cceeEEEEecCCCEEEEeeCCC----cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----CCeEE
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCY 210 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~ 210 (267)
..+..+.|+|+|++++..+.++ .|.+||..+++. ..+.... ..+....+ +++. ++..+. ++.|.
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~-----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV-----GAKYEVHA-WKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS-----SCCEEEEE-ETTE-EEEEECTTCTTCEEE
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC-----CceEEEEe-cCCc-EEEEECCCCCCCEEE
Confidence 5688999999999998877665 677776654433 2232221 12344445 5666 544443 57899
Q ss_pred EEeCCccce--eeecccccCCc-cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 211 VWDTLLAKV--VLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 211 i~d~~~~~~--~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+||+...+. ...+ ...+ ...+..++++ ++.++++...|+..+||.+
T Consensus 299 ~~d~~~~~~~~~~~l---~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 299 EVDPAKPARASWKEI---VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEBTTBCSGGGCEEE---ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCCccCCeEE---ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 999865432 1111 1122 4568888888 7788899999999999865
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=5.4e-10 Score=91.80 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=144.9
Q ss_pred eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccc--ccccCCeeeEEEEEEecCCCeeEEEee-C-C
Q 024451 3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVS--RMLSGHKGYVSCCQYVPDEDTHLITSS-G-D 68 (267)
Q Consensus 3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-d 68 (267)
++|+|||+.|..+. .+++|.+||...... ....+.. .... +...-..+.++|++. +|+.+. . +
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~-~g~~p~~~~~spDG~-~l~v~n~~~~ 147 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFD-VGPYSWMNANTPNNA-DLLFFQFAAG 147 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccc-cCCCccceEECCCCC-EEEEEecCCC
Confidence 67999999988875 368899999864211 0111110 0000 012234678999875 555554 3 5
Q ss_pred CeEEEEeCCCCeeEEE-eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-----ccccce-
Q 024451 69 QTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDV- 141 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i- 141 (267)
++|.++| .+++.... +... . ++.+.+...+.+++.+.||.+.++|. ... ...... ....++
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~------~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~~~~~~p~~ 215 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP------T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAMLTAAQNLL 215 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC------c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEEEEeccccccCCccee
Confidence 8899999 88876554 4211 1 12334444556777888999999998 433 221111 111121
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeee--EEEEeecC----CC-CCCcEEEEEEccCCCEEEEEEe---------
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL--QVYYQQHG----EN-EIPHVTSIAFSISGRLLFAGYS--------- 205 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~----~~-~~~~v~~~~~s~~~~~l~~g~~--------- 205 (267)
....+.+++..++..+..+.+.+.|+...... ..+..... .. .......+.++++++.+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~ 295 (373)
T 2mad_H 216 TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred ecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence 23455666554444446789999998654321 11100000 00 0112344788999988877653
Q ss_pred -CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451 206 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR 264 (267)
Q Consensus 206 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~ 264 (267)
++.|.++|..+.+.+..+. .......++|+|||+ .++++. .++.|.++|....+
T Consensus 296 ~~~~V~VID~~t~~vv~~i~-----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 296 AAKEVTSVTGLVGQTSSQIS-----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCeEEEEECCCCEEEEEEE-----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 3589999998888766542 122468899999999 777776 48999999986654
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=5.5e-10 Score=88.82 Aligned_cols=228 Identities=12% Similarity=0.084 Sum_probs=141.2
Q ss_pred eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
..|+|+ +.++++...++.|..||..... . ..+ .....+.++.+.|++. +++ +. ++.|.+||.+++..
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-------V-QRV-TMDAPVSSVALRQSGG-YVA-TI-GTKFCALNWKEQSA 85 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCC-------E-EEE-ECSSCEEEEEEBTTSS-EEE-EE-TTEEEEEETTTTEE
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-eCCCceEEEEECCCCC-EEE-EE-CCeEEEEECCCCcE
Confidence 357874 5677777788999999975421 1 111 2335688899999765 444 43 56899999988754
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 152 (267)
........ ......++.+.+++ +++++++... ...-.+|.+..... ...+..+....+.++|+|+++.
T Consensus 86 ~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCE
Confidence 43322110 11234577888886 4566665422 12234444332222 2223333445678999999986
Q ss_pred E-EEeeCCCcEEEEeC--CCCeee--EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 153 F-GTGSDDGTCRLFDI--RTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 153 l-~~~~~d~~i~iwd~--~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
+ ++.+.++.|.+||+ .++... ..+.. . ......+..++++++|++.++...++.|..||..+++.+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~-~-~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--- 237 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYK-L-EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--- 237 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEE-C-CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEE-C-CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---
Confidence 6 45566789999987 344321 12221 1 1112356789999999988888888899999987776654432
Q ss_pred CCccceEEEEEEC-CCCCeEEEeEC
Q 024451 228 NSHEGRITCLGLS-ADGSALCTGSW 251 (267)
Q Consensus 228 ~~~~~~v~~~~~~-p~~~~l~sgs~ 251 (267)
.+...+++++|. |+++.|..++.
T Consensus 238 -~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 -LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred -CCCCCceEEEEeCCCCCEEEEEcC
Confidence 234578999998 88887655443
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=5.7e-10 Score=96.35 Aligned_cols=236 Identities=13% Similarity=0.045 Sum_probs=152.1
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC--CCeeEE
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--TGLRTS 83 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~ 83 (267)
+|.+..+++...+++|.++|..... +...+.. ...++.+.|+|++ +++++++.|+.|.+||+. +.....
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~-------v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCC-------EEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCe-------EEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 3456778888999999999986521 3333322 2245688999976 578888899999999995 655444
Q ss_pred EeCCccccCCccceEEEEEeC----CCCeEEEEecCCCeEEEEeCCCcccceEEeec----------c-ccceeEEEEec
Q 024451 84 VFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----------H-EGDVNTVKFFP 148 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----------~-~~~i~~~~~~~ 148 (267)
.+. .+ .....+.+++ ....++++...++.+.++|..+. +.+..+.. | ...+..+..++
T Consensus 235 ~i~----~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~ 307 (567)
T 1qks_A 235 EIK----IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILASH 307 (567)
T ss_dssp EEE----CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred EEe----cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEeccccccccccccCCCceEEEEEcC
Confidence 332 11 2346788883 44455566667799999997643 34443321 1 12567788888
Q ss_pred CCCEE-EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeeccc-
Q 024451 149 DGNRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGS- 225 (267)
Q Consensus 149 ~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~- 225 (267)
++..+ +....+|.|.++|..+.+.+....... ......+.|+|++++++++. .++.|.++|..+++......-
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~----~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISA----ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeeeec----cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 76554 445567999999987654333221111 13467889999999987766 578999999998876654422
Q ss_pred ccCCccceEEEEEECCCC-CeEEEeE-CCCcEEEEecCc
Q 024451 226 LQNSHEGRITCLGLSADG-SALCTGS-WDTNLKIWAFGG 262 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~-~~l~sgs-~dg~i~~w~~~~ 262 (267)
-...|.+.-..+ ++|++ ..++++. .++.|.+++...
T Consensus 384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 223454322222 57874 4445543 368999998653
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=2e-10 Score=92.77 Aligned_cols=223 Identities=8% Similarity=-0.035 Sum_probs=141.2
Q ss_pred CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451 17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 96 (267)
Q Consensus 17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 96 (267)
.+++|.+||........ ......--.........+.+.. +...++...++.|.+||..+++.+..+. ....
T Consensus 15 ~~~~l~~~d~~t~~~~~-~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~------~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVEN-EVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT------GFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEEC-SHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE------CCSS
T ss_pred CCceEEEEECCCCEEhh-hhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC------CCCC
Confidence 48999999986522100 0000000001123345566643 4566667778999999999987766552 1244
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-----cceeEEEEecCCCEEEEee-CCCcEEEEeCCCC
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG 170 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 170 (267)
...+++++. ++++++...++.|.+||.... +....+.... .....+++ .++..+++.. .++.|.++|+.++
T Consensus 86 p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~-~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLSD-EKAYVTQIWDYRIFIINPKTY-EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEET-TEEEEEEBSCSEEEEEETTTT-EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeCC-CeEEEEECCCCeEEEEECCCC-eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence 667778654 477777667899999998743 3333333221 14556777 4444455444 4889999999988
Q ss_pred eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----------CeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
+....+.. . .....+.++++|+++++...+ +.|.++|..+.+....+. .........++|+
T Consensus 163 ~~~~~i~~--g----~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~ 233 (328)
T 3dsm_A 163 KVVDELTI--G----IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLN 233 (328)
T ss_dssp EEEEEEEC--S----SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEEC
T ss_pred eEEEEEEc--C----CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEe
Confidence 76654422 1 124678899999977776654 789999988776554331 1112356889999
Q ss_pred CCCCeEEEeECCCcEEEEecCc
Q 024451 241 ADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+++.|..+.. .|.+|+...
T Consensus 234 ~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 234 GTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp TTSCEEEEESS--SEEEEETTC
T ss_pred cCCCEEEEEcc--EEEEEECCC
Confidence 99998887643 888888643
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.41 E-value=7.3e-11 Score=105.06 Aligned_cols=199 Identities=6% Similarity=-0.062 Sum_probs=126.8
Q ss_pred cCCeeeEEEEEEecCCCeeEEEeeC-CC----eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 43 SGHKGYVSCCQYVPDEDTHLITSSG-DQ----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 43 ~~h~~~v~~~~~~~~~~~~l~s~~~-d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
.+|+..+..++|+|++. +|+.++. +| .|++||+.++....... ....+..+.|++. ++.|+.++.++
T Consensus 121 ~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------~~~~~~~~~wspD-g~~l~~~~~~~ 192 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVL------ERVKFSCMAWTHD-GKGMFYNAYPQ 192 (710)
T ss_dssp TTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEE------EEECSCCEEECTT-SSEEEEEECCC
T ss_pred cCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccc------cCcccceEEEEeC-CCEEEEEEECC
Confidence 45667889999999875 5554433 33 89999999987554211 1112456889875 45556665554
Q ss_pred e----------------EEEEeCCCcccc-eEEee--ccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCC----
Q 024451 118 T----------------ARLWDTRVASRA-VRTFH--GHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRT---- 169 (267)
Q Consensus 118 ~----------------i~iwd~~~~~~~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~---- 169 (267)
. |++|++...... ...+. .|...+..+.|+|+|++++..+. +..|.+||+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 4 999998654321 12222 23445778999999999887764 67899999976
Q ss_pred --Ce-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccce--eeecccccCCcc-ceEEEEEE
Q 024451 170 --GH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKV--VLNLGSLQNSHE-GRITCLGL 239 (267)
Q Consensus 170 --~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~-~~v~~~~~ 239 (267)
+. ....+.... ..+.. .|+++|..|+..+.. +.|.+||+..... ...+ ...+. ..+..++|
T Consensus 273 ~~~~~~~~~l~~~~-----~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 273 ITGILKWVKLIDNF-----EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL---VPEHEKDVLEWVAC 343 (710)
T ss_dssp SCSSCCCEEEECSS-----SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---ECCCSSCEEEEEEE
T ss_pred cCCccceEEeeCCC-----CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec---cCCCCCCeEEEEEE
Confidence 42 233332211 12233 478899887776653 3699999866431 1111 11122 36888999
Q ss_pred CCCCCeEEEeECCCcEEEE
Q 024451 240 SADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w 258 (267)
++++.++++...|+..+||
T Consensus 344 ~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 344 VRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp ETTTEEEEEEEETTEEEEE
T ss_pred EcCCEEEEEEEECCEEEEE
Confidence 9888888999999965555
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.40 E-value=3.4e-10 Score=88.34 Aligned_cols=196 Identities=9% Similarity=0.006 Sum_probs=131.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++++++|+++++.. ++.|.+||..... ...........+..+.+.|++ .++++...++.|.+|+..+...
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNN-------QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSC-------CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSC
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCce-------EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCcee
Confidence 467899999777776 8899999865421 111111223457889998865 4566666788999998665433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.... ......+..+++++ +++++++...++.|.+|+..... .......+...+..++++++|..+++...++.
T Consensus 142 ~~~~-----~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 142 TVLP-----FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp EECC-----CCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred Eeec-----cccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCc-eEeecccCCCCceEEEECCCCCEEEEECCCCc
Confidence 2211 11223456777876 45677777778899999976422 22222223356789999999988888778899
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
|.+||........ . .......+..++++++|+++++...++.|++|+....+
T Consensus 215 v~~~~~~~~~~~~-~----~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-L----PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEECTTCSCCEE-C----CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEEEcCCCCccee-e----ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9999986543221 1 11122357899999999988888889999999976544
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=9.6e-10 Score=91.45 Aligned_cols=243 Identities=9% Similarity=0.105 Sum_probs=151.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~ 79 (267)
.++|+++|+++++...++.|++||..... +....... .... ++|.|++. .|+.+..++ .|.+++...+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~-------~~~~~~~~-~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNK-------VTTVHPGF-KGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTE-------EEEEEETC-CBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGT
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCE-------EEEeeccC-CCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCC
Confidence 46789999989988888999999976421 11111121 1223 78888764 566666655 7888888765
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe-----eccccce--eEEEEecC-CC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-----HGHEGDV--NTVKFFPD-GN 151 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i--~~~~~~~~-~~ 151 (267)
.....+. .........+..+++++.++.+++ +..++.|..||..... ...+ .++...- ..++|+|+ +.
T Consensus 205 ~~~~~~g-~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 205 WAPTRIG-QLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp TCEEEEE-ECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred ceeEEee-eccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCE
Confidence 4322220 000112344567888875666666 5668899999986432 2222 1222222 38999995 66
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeec-CCC---------CCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCcccee
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GEN---------EIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVV 220 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---------~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~ 220 (267)
++++-..++.|+.|+.... ...+.... ... .......++++++|+++++-. .++.|+.||...++..
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 6666677889999997643 22232221 000 012478999999999888877 7899999996555432
Q ss_pred eeccc-ccC---------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 221 LNLGS-LQN---------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 221 ~~~~~-~~~---------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..... ... ..-.....++++|+|.++++-..++.|+.+++
T Consensus 359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 11110 000 01134688999999988888888888888764
No 205
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=2.1e-09 Score=86.61 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=136.1
Q ss_pred eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+|+|+ +.++.+...++.|..||..... . ..+ .+...+.++.+.|++ .++++ +.+ .|.+||..++..
T Consensus 54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~-------~-~~~-~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 54 PTFDPASGTAWWFNILERELHELHLASGR-------K-TVH-ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTE-------E-EEE-ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEECCCCc-------E-EEE-ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcE
Confidence 468887 4566676678899999875421 1 111 123468889999875 44443 444 499999987764
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecC------CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
........ ......+..+.+++. ++++++... .+.|..++ . .. ...+..+......++|+|+++.++.
T Consensus 122 ~~~~~~~~-~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~--g~-~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 122 TLHAELES-DLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-K--GK-VTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEECSST-TCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-T--TE-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred EEEeeCCC-CCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-C--Cc-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence 43322110 011245788888864 556655432 23455555 2 22 2233333345678999999987654
Q ss_pred -eeCCCcEEEEeCC--CC-ee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 156 -GSDDGTCRLFDIR--TG-HQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 156 -~~~d~~i~iwd~~--~~-~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
...++.|.+||++ ++ +. ...+... ......+..++++++|.+.++...++.|..||. .++.+..+ ..
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i----~~ 268 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY----EV 268 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE----EC
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE----EC
Confidence 4567899999986 44 21 1122211 111234678899999998888777789999997 44443332 12
Q ss_pred ccceEEEEEEC-CCCCeEEEeEC
Q 024451 230 HEGRITCLGLS-ADGSALCTGSW 251 (267)
Q Consensus 230 ~~~~v~~~~~~-p~~~~l~sgs~ 251 (267)
+...+.+++|+ |+++.|..++.
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCcEEEEEecCCCCEEEEEec
Confidence 34468999998 89887755444
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=5.1e-09 Score=82.71 Aligned_cols=232 Identities=7% Similarity=-0.035 Sum_probs=147.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+++.++|+++++...++.|..||... . . ....+......+..+.+.+++ .+.++...++.|..+|.. +..
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~g-~-----~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKKG-G-----F-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTS-C-----E-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECCCC-C-----e-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCE
Confidence 356788999888877788899998652 1 1 111122233567888888865 455666667899999987 433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.... . ......+..+.+.+ +++++++...++.|..++.. ..........+...+..+.+.++++..++....+.
T Consensus 137 ~~~~-~---~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 137 YEYD-L---PNKGSYPAFITLGS-DNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EEEE-C---SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EEcc-C---CCCCCCceeEEECC-CCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE
Confidence 2211 1 11234567888875 45677777777889999873 22111112223456789999999987777767788
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|.+||. +++... +.. ......+..+++++++++.++...++.|..||.. ++.. ... . ......+.+++++|
T Consensus 211 i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-~-~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 211 IGRITT-TGEISE-YDI---PTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQ-L-QTENAEPHGITFGK 281 (300)
T ss_dssp EEEECT-TCCEEE-EEC---SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEE-C-CSTTCCCCCEEECT
T ss_pred EEEEcC-CCcEEE-EEC---CCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEE-C-CccCCccceeEeCC
Confidence 999998 444322 211 1123457899999999977776667899999973 3322 111 1 12234578899999
Q ss_pred CCCeEEEeECCCcEEEEe
Q 024451 242 DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~ 259 (267)
+|+++++.. . .|..++
T Consensus 282 ~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 282 DGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp TSCEEEECS-S-EEEEEE
T ss_pred CCCEEEEcc-C-ceEEeC
Confidence 998777654 4 555554
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=1.4e-10 Score=103.67 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=137.7
Q ss_pred CCCCCeEEEccCCCe---EEEeecCCCCCCCCCCccc----ccccCCeeeEEEEEEecCCCeeEEEee-CC----CeEEE
Q 024451 6 SPTGQSVACGGLDSV---CSIFNLNSPTDKDGNLPVS----RMLSGHKGYVSCCQYVPDEDTHLITSS-GD----QTCVL 73 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~---v~~w~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d----~~v~i 73 (267)
+|+|++++....++. -.+|.........+..... ..-.+|...+..++|+|++. +|+.++ .+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR-LLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS-EEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEE
Confidence 478988877665443 5667654320000111110 11234556788999999875 455443 32 36999
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--------------eEEEEeCCCcccc-eEEeec--
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--------------TARLWDTRVASRA-VRTFHG-- 136 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--------------~i~iwd~~~~~~~-~~~~~~-- 136 (267)
||+.++...... .+...+..+.|++. . .|+.+..++ .|++|++...... ...+..
T Consensus 194 ~dl~tg~~~~~~------~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 194 VGVADGKPLADE------LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EETTTCCEEEEE------EEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EECCCCCCCCcc------CCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 999988654321 01112246778875 4 455554443 3889987643321 222222
Q ss_pred cccceeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCe-e-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGH-Q-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---- 205 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~-~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---- 205 (267)
+...+..+.|+|+|++++..+.++ .|.+||+.++. . ...+.... ...... ++|+++.|+..+.
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~-~~~dg~~l~~~s~~~~~ 339 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-----KAQWDF-VDGVGDQLWFVSGDGAP 339 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-----SSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-----CceEEE-EeccCCEEEEEECCCCC
Confidence 223478999999999988777544 89999998762 1 23332211 122333 3488888887765
Q ss_pred CCeEEEEeCCccc-eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 206 NGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 206 dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
++.|++||+.... ....+ ...+...+..++++ ++.++++...|+..+||.+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l---~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTV---VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp TCEEEEEECSSSSCEEEEE---ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEeCCCCccccEEE---ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 3469999986531 11111 12344567778887 6678888999999888865
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=8.5e-10 Score=88.04 Aligned_cols=227 Identities=9% Similarity=0.075 Sum_probs=137.6
Q ss_pred eeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
..|+|+|+ ++++...++.|..|+... . ...+..+...+..+.+.+++ +++++...++.|.+|+.+ +..
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~~g------~---~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWREDG------T---VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTS------C---EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeCCC------C---EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCE
Confidence 46889998 677777889999997532 1 12233445667889999875 455544556789999986 432
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEE----ecC-------------CCeEEEEeCCCcccceEEeeccccceeEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVS----GSC-------------DSTARLWDTRVASRAVRTFHGHEGDVNTV 144 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 144 (267)
..... .........+..+.+.+ +++++++ +.. .+.|..+|..... ...+. .....+.+
T Consensus 119 ~~~~~-~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 119 HLLVG-RYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA-DLDHPNGL 193 (305)
T ss_dssp EEEEC-EETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE-EESSEEEE
T ss_pred EEEEe-ccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe-cCCCCcce
Confidence 22211 11111112355677875 5667776 332 2457777764322 22222 33456789
Q ss_pred EEecCCCEEEEeeCC------CcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 145 KFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
+|+|+++.++.+... +.|.+||+.... +.. .+... .......++++++|++.++. .+ .|.+||..
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~---~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~- 266 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV---PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD- 266 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC---SSSCCCSEEECTTSCEEECC-SS-EEEEECTT-
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC---CCCCCCeEEECCCCCEEEec-CC-cEEEECCC-
Confidence 999999977766554 789999987654 211 11111 11234567889999955544 44 49999974
Q ss_pred cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
++.+..+. ... .+.+++|+|+++.|..++.++..++
T Consensus 267 g~~~~~~~----~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 267 GQLLGHIP----TPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCEEEEEE----CSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEE----CCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44433321 122 4778999999998888887754444
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=4.4e-10 Score=91.32 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=144.2
Q ss_pred ceeeCCCCCeEEEcc--CCCeEEEeecCCCCCCCCCCcc-cccccCCeeeEEEEEEecCCCeeEEEeeC-----CCeEEE
Q 024451 2 TCAFSPTGQSVACGG--LDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVL 73 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~--~d~~v~~w~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~v~i 73 (267)
.++++|+|+++++.. .++.++||.+... .....|. .....+|...+..+++.+++ ++.++-.. +..|.+
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETT--EEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCC--CeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEE
Confidence 367899999998853 2343566665411 0000010 01223566789999999875 44443322 578999
Q ss_pred EeCCCCeeEEEeCCc-cccCCccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeecc------------
Q 024451 74 WDITTGLRTSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGH------------ 137 (267)
Q Consensus 74 wd~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~~------------ 137 (267)
||+.+++....+... ....+...+..+++++..+..+++.. .++.|.+||.... +..+.+.+|
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCEE
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccceeE
Confidence 999988755544321 11123345678888866667777766 6789999998633 233323221
Q ss_pred -----------------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC-----e--------eeEEEEeecCCCCCCc
Q 024451 138 -----------------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-----H--------QLQVYYQQHGENEIPH 187 (267)
Q Consensus 138 -----------------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~--------~~~~~~~~~~~~~~~~ 187 (267)
...+..++|+|+++.|+.+..++. ++|.+... . .+.. ... ...
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~-----~g~ 249 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIER-YSE-----KPI 249 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEE-EEE-----CCS
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEe-ccc-----CCC
Confidence 023578999999998887766553 44443211 0 0000 011 113
Q ss_pred EEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451 188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 255 (267)
Q Consensus 188 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i 255 (267)
...++++++|.++++...++.|.+||...++.. .... ..+.....+++|.|+++++++.+..+.+
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVT--DEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE--CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEE--CCceecCCeeEECCCCcEEEEeCccccc
Confidence 456889999999999989999999997344322 1111 1123457899999999988887654433
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=1.1e-09 Score=97.17 Aligned_cols=232 Identities=15% Similarity=0.126 Sum_probs=141.1
Q ss_pred eeeCCCCCeEE-----EccCCCeEEEeecCCCCCCCCCCcccccccCCeee--EEEEEEecCCCeeEEEeeCCC------
Q 024451 3 CAFSPTGQSVA-----CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTHLITSSGDQ------ 69 (267)
Q Consensus 3 ~~~~~~g~~l~-----~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~d~------ 69 (267)
.+|+|||++|+ .|+.+.+|++||+.... ... .+... ...++|+ +++ .|+.++.+.
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-------~~~---~~~~~~k~~~~~Ws-Dg~-~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-------PLE---TPLKDVKFSGISWL-GNE-GFFYSSYDKPDGSEL 201 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-------EEE---EEEEEEESCCCEEE-TTT-EEEEEESSCCC----
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCC-------CCc---cccCCceeccEEEe-CCC-EEEEEEecCcccccc
Confidence 47999999988 45555789999987532 111 12222 2467898 775 455565553
Q ss_pred -------eEEEEeCCCCee--EEEeCCccccC-CccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeec
Q 024451 70 -------TCVLWDITTGLR--TSVFGGEFQSG-HTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 70 -------~v~iwd~~~~~~--~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~ 136 (267)
.|++|++.++.. ..++.. .. |......+.+++....++++.. .+..|.++|+.........+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred cccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 499999987642 233321 12 3344677888876555555543 2358999998654334455555
Q ss_pred cccceeEEEEecCCCEEEEee-CC---CcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---
Q 024451 137 HEGDVNTVKFFPDGNRFGTGS-DD---GTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--- 207 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~-~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--- 207 (267)
+....... ++++++.|+..+ .| +.|..+|+.++.. ...+.. +.. .+. .|+++++.|+....++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~----~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-ERQ----QVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCS----SCE--EEEEETTEEEEEEEETTEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-CCC----CEE--EEEEECCEEEEEEEECCee
Confidence 55555444 666666655444 33 5788999887643 122222 111 223 7889999888776544
Q ss_pred eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC----CcEEEEecC
Q 024451 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD----TNLKIWAFG 261 (267)
Q Consensus 208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d----g~i~~w~~~ 261 (267)
.|++||+.... ...+ .....+.+..+.++|+++.|+....+ +++..|++.
T Consensus 351 ~l~~~d~~g~~-~~~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEECTTSCE-EEEE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCCCe-eEEe---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 78899876432 2222 12344567788888888877655444 678888763
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=1.7e-09 Score=88.35 Aligned_cols=239 Identities=11% Similarity=0.044 Sum_probs=144.4
Q ss_pred eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccccccc-CC------eeeEEEEEEecCCCeeEEEe
Q 024451 3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLS-GH------KGYVSCCQYVPDEDTHLITS 65 (267)
Q Consensus 3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h------~~~v~~~~~~~~~~~~l~s~ 65 (267)
++++|||+++..+. .++.|.+||..... ....+. +. ...-..+.|+|++. +++.+
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVa 154 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFY 154 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe-------EEEEEECCCccccccCCCCceEEEcCCCC-EEEEE
Confidence 57899999887765 36789999986532 112111 00 01233578899875 45544
Q ss_pred e--CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc----cc
Q 024451 66 S--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EG 139 (267)
Q Consensus 66 ~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~ 139 (267)
. .++.|.++|..+.+....+... + . .-+.|...+.+++.+.||.+-+.++....+.......+ ..
T Consensus 155 n~~~~~~VsVID~~t~~vv~tI~v~---g-~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 155 QFSPAPAVGVVDLEGKAFKRMLDVP---D-C-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECC---S-E-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred EcCCCCeEEEEECCCCcEEEEEECC---C-c-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 4 3789999999998776665321 1 1 11223344566678889998888886433332111111 12
Q ss_pred cee-EEEEe-cCCCEEEEeeCCCcEEEEeCCCCee--eEEEE--ee---cCCCCCCcEEEEEEccCCCEEEEEEe-----
Q 024451 140 DVN-TVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ--LQVYY--QQ---HGENEIPHVTSIAFSISGRLLFAGYS----- 205 (267)
Q Consensus 140 ~i~-~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~---~~~~~~~~v~~~~~s~~~~~l~~g~~----- 205 (267)
.+. ...|. ++|+++. .+.++.+.+.|+.+... ...+. .. ...-.......++++++++.++....
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 222 24554 5675544 45578999999976542 11110 00 00000112234677899888877653
Q ss_pred -----CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEe-ECCCcEEEEecCceE
Q 024451 206 -----NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG-SWDTNLKIWAFGGYR 264 (267)
Q Consensus 206 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sg-s~dg~i~~w~~~~~~ 264 (267)
...|.++|..+.+.+..+. -..++..++++||++ .|++. ..++.|.++|....+
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~-----vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFE-----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ccCCCCCEEEEEECCCCeEEEEEE-----CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2579999999988876552 123678999999997 66654 448999999975543
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.20 E-value=2.1e-08 Score=83.40 Aligned_cols=202 Identities=16% Similarity=0.055 Sum_probs=129.1
Q ss_pred eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++|+|+++.|+.+..++ .|.+|+...... ......+ ..+...+.++++.|+++. |+.+..++.|+.||..++
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~----~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~ 250 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA----PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQ 250 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC----EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCce----eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCC
Confidence 57899999888888766 677777643210 0011011 113455677889985554 444677889999999876
Q ss_pred eeEEEeCCccccCCccce-E-EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc---------------ccee
Q 024451 80 LRTSVFGGEFQSGHTADV-L-SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE---------------GDVN 142 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i-~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~i~ 142 (267)
......... ..++...- . .+++++.++.++++...++.|+.|+.... ...+.++. ....
T Consensus 251 ~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 251 EVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp CEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred CEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 533221000 11121111 2 78899867888888888899999987522 22232321 2367
Q ss_pred EEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCC----------CCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451 143 TVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGE----------NEIPHVTSIAFSISGRLLFAGYSNGDCYV 211 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 211 (267)
.++++|+|+++++-. .++.|+.||+.++.. ..+...... ........+++++++.++++-..++.|+.
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 899999999888887 899999999777653 333322100 01234789999999888888777888877
Q ss_pred EeC
Q 024451 212 WDT 214 (267)
Q Consensus 212 ~d~ 214 (267)
+++
T Consensus 406 i~~ 408 (409)
T 3hrp_A 406 YAV 408 (409)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.17 E-value=1.4e-07 Score=74.78 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=123.3
Q ss_pred EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128 (267)
Q Consensus 49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 128 (267)
.-+..|+|+++.++++...++.|..||..++.... +. ....+..+.+++. ++++++. +..|.+||.....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~------~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT------MDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE------CSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee------CCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCc
Confidence 34567888777777788888999999998765422 21 2345778888864 4555543 5679999976422
Q ss_pred cceEEeec-----cccceeEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 129 RAVRTFHG-----HEGDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 129 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
...+.. ....++.+.++|+|+++++... .....+|.+............ ......++|+
T Consensus 85 --~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-----~~~pngi~~s 157 (297)
T 3g4e_A 85 --AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-----VDISNGLDWS 157 (297)
T ss_dssp --EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-----ESBEEEEEEC
T ss_pred --EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-----cccccceEEc
Confidence 222221 1234788999999997765432 233456655432222222221 1235789999
Q ss_pred cCCCEEEE-EEeCCeEEEEeCC--cccee--eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 195 ISGRLLFA-GYSNGDCYVWDTL--LAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 195 ~~~~~l~~-g~~dg~i~i~d~~--~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|+++.++. .+.++.|..||.. .+... ..+..+ ..+.+....++++++|++.++...++.|..|+..
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 99987754 4567899999863 33221 011111 1234567889999999988888778889999874
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=6.2e-09 Score=86.42 Aligned_cols=239 Identities=12% Similarity=0.034 Sum_probs=144.9
Q ss_pred eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCccccccc-C------CeeeEEEEEEecCCCeeEEEe
Q 024451 3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLS-G------HKGYVSCCQYVPDEDTHLITS 65 (267)
Q Consensus 3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~-~------h~~~v~~~~~~~~~~~~l~s~ 65 (267)
++++|||+.|..+. .++.|.++|..... ....+. + ....-..+.++|++. +++.+
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~-------vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~ 194 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL-------PIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFY 194 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-------EEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEE
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc-------EEEEEECCCccccccCCCcceEEEcCCCC-EEEEE
Confidence 57899999888776 36789999986532 111110 0 001223467889875 55555
Q ss_pred eC--CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE----eecccc
Q 024451 66 SG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT----FHGHEG 139 (267)
Q Consensus 66 ~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~ 139 (267)
.. +++|.+.|..+.+....+.. +.. ....+...+.+++.+.||.+.+.+.. ..+.... +.....
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v----~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDV----PDC-----YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNTEVFHTEDE 264 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEEC----CSE-----EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEECCCCSCTTS
T ss_pred ecCCCCeEEEEECCCCeEEEEEEc----CCc-----eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEeeeeeccCCC
Confidence 43 68899999999876665532 111 11222233556667778887777763 2322211 111111
Q ss_pred ce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCC-C----CCcEEEEEEccCCCEEEEEEe------
Q 024451 140 DV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGEN-E----IPHVTSIAFSISGRLLFAGYS------ 205 (267)
Q Consensus 140 ~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~g~~------ 205 (267)
++ ..+.+.++++.++.....+.+.+.|........ .+....... . ......+++++++..+++...
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 21 245678888877666778899999986543211 000000000 0 001123688999887777643
Q ss_pred ----CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451 206 ----NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR 264 (267)
Q Consensus 206 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~ 264 (267)
++.|.++|..+.+.+..+. -......++|+|||+ .+++.. .++.|.++|...++
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~-----vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIE-----LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEE-----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ccCCCCEEEEEECCCCeEEEEEE-----CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 3579999999988776552 122468899999999 888777 49999999986654
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=2.7e-08 Score=79.22 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=120.6
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCccc--ccccC-CeeeEEEEEEecCCCeeEEEeeCC---------
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--RMLSG-HKGYVSCCQYVPDEDTHLITSSGD--------- 68 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d--------- 68 (267)
.++++++ |+++++...+ .|.+||.. .. .... ....+ ....+.++.+.|++. +.++...+
T Consensus 75 ~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~-----~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 75 GCQCDRDANQLFVADMRL-GLLVVQTD-GT-----FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEECSSSSEEEEEETTT-EEEEEETT-SC-----EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred eEEEecCCCcEEEEECCC-CEEEEeCC-CC-----EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence 4678898 7766665544 68888865 21 1111 00111 224578899998764 45544443
Q ss_pred ------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe----CCCCeEEEEecCCCeEEEEeCCCccc-----ceEE
Q 024451 69 ------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS----GSNSRMFVSGSCDSTARLWDTRVASR-----AVRT 133 (267)
Q Consensus 69 ------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~s~~~d~~i~iwd~~~~~~-----~~~~ 133 (267)
+.|..||.. +...... .+......++++ +....++++...++.|.+|+...... ....
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~ 219 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVD------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH 219 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEE------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred cccCCCCeEEEECCC-CCEEEec------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence 567777765 3322221 112234667777 65445666667788999998651111 1222
Q ss_pred eeccc-cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEE
Q 024451 134 FHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYV 211 (267)
Q Consensus 134 ~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i 211 (267)
+.++. .....++++++|+++++...++.|.+||.++++....+.. ....+.+++|+++++.|.++ ..++.|..
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-----PFEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-----SSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-----CCCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 33333 4578899999999888888889999999986655443321 11358899999999955554 45688999
Q ss_pred EeCCc
Q 024451 212 WDTLL 216 (267)
Q Consensus 212 ~d~~~ 216 (267)
|+...
T Consensus 295 ~~~~~ 299 (314)
T 1pjx_A 295 FEWQR 299 (314)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 99764
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=2.2e-07 Score=76.28 Aligned_cols=200 Identities=10% Similarity=0.038 Sum_probs=121.4
Q ss_pred eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++|+|||++|..+.. +++|.++| .... .... +.- . .++.+.|.+...+++.+.|+.+.++|. ++
T Consensus 130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~-------~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 130 NANTPNNADLLFFQFAAGPAVGLVV-QGGS-------SDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred eEECCCCCEEEEEecCCCCeEEEEE-CCCC-------EEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 579999999998764 57899999 6532 2222 211 1 124455666566778888999999999 76
Q ss_pred eeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeec----------cccceeEEEEe
Q 024451 80 LRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHG----------HEGDVNTVKFF 147 (267)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~----------~~~~i~~~~~~ 147 (267)
........ ....+.........+.+..++++... ..+.+.+.|+.... .....+.. .......+.++
T Consensus 197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred cEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 54422110 00001111111223333344444443 56788888875321 11111110 01223447889
Q ss_pred cCCCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCC
Q 024451 148 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL 215 (267)
Q Consensus 148 ~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~ 215 (267)
|+++.+..... ++.|.++|+.+.+.+..+... .....+.|+|+|+ .++++. .++.|.+||..
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 99887766543 357999999988776655221 1368999999999 777776 58999999998
Q ss_pred ccceeee
Q 024451 216 LAKVVLN 222 (267)
Q Consensus 216 ~~~~~~~ 222 (267)
+.+.+..
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 8877654
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.08 E-value=4.9e-07 Score=72.73 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=120.8
Q ss_pred EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
....|+|+++.++++...++.|..||.+++.... +. ....+.++.+.+. ++++++. . ..|.+||.....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~------~~~~v~~i~~~~d-g~l~v~~-~-~gl~~~d~~~g~- 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA------LPFMGSALAKISD-SKQLIAS-D-DGLFLRDTATGV- 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE------CSSCEEEEEEEET-TEEEEEE-T-TEEEEEETTTCC-
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE------CCCcceEEEEeCC-CeEEEEE-C-CCEEEEECCCCc-
Confidence 4567888766777788788999999998775432 21 1245778888764 5565544 3 358899975432
Q ss_pred ceEEeecc-----ccceeEEEEecCCCEEEEeeCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451 130 AVRTFHGH-----EGDVNTVKFFPDGNRFGTGSDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 200 (267)
Q Consensus 130 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 200 (267)
...+... ...+..+.++|+|+++++...+ ....||.+.+++. ..+... ......++|+|+++.+
T Consensus 121 -~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~~~-----~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 121 -LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFAD-----ISIPNSICFSPDGTTG 193 (326)
T ss_dssp -EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEE-----ESSEEEEEECTTSCEE
T ss_pred -EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEeeCC-----CcccCCeEEcCCCCEE
Confidence 2222211 2357899999999977655422 2344444434432 222211 1235789999999877
Q ss_pred EEE-EeCCeEEEEeCC--cc-cee--eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 201 FAG-YSNGDCYVWDTL--LA-KVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 201 ~~g-~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.+ ..++.|++||.. .+ +.. ..+..+ .........++++++|++.++...++.|..|+..+
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence 554 456899999975 33 211 011111 12234567899999999888776678899998754
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.07 E-value=1.1e-07 Score=75.68 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=121.7
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
........|.|++..++++...++.|..|+.. +.. ..+. .....+..+.+++ +++++++...++.|..|+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~-----~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL-----DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE-----ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe-----CCCCccceeeECC-CCCEEEEECCCCEEEEECCC
Confidence 34456678889876677888888999999984 332 2221 1334567888876 45676666666789999874
Q ss_pred CcccceEEeecc-----ccceeEEEEecCCCEEEE----eeC-------------CCcEEEEeCCCCeeeEEEEeecCCC
Q 024451 126 VASRAVRTFHGH-----EGDVNTVKFFPDGNRFGT----GSD-------------DGTCRLFDIRTGHQLQVYYQQHGEN 183 (267)
Q Consensus 126 ~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~ 183 (267)
.. ...+..+ ...++.+.++|+|+..++ |.. .+.|..+|..+++..... . .
T Consensus 116 -g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~--- 187 (305)
T 3dr2_A 116 -GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-L--- 187 (305)
T ss_dssp -SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-E---
T ss_pred -CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-C---
Confidence 22 2222111 134678999999998886 332 245777777655543322 1 1
Q ss_pred CCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 184 EIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 184 ~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
.....++|+|+++.|+.+... +.|+.||..... +.....+.....+....++++++|++.++. .+| |.+
T Consensus 188 --~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~ 262 (305)
T 3dr2_A 188 --DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG-VCV 262 (305)
T ss_dssp --SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE-EEE
T ss_pred --CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc-EEE
Confidence 235789999999988777654 789999975433 111100101112234568899999966654 444 888
Q ss_pred EecCc
Q 024451 258 WAFGG 262 (267)
Q Consensus 258 w~~~~ 262 (267)
|+..+
T Consensus 263 ~~~~g 267 (305)
T 3dr2_A 263 FDSDG 267 (305)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 87654
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.05 E-value=8.3e-08 Score=78.46 Aligned_cols=203 Identities=16% Similarity=0.236 Sum_probs=123.9
Q ss_pred eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-C
Q 024451 3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-G 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~ 79 (267)
++|+|||++|..+.. +++|.++|..... ....+.-- + |..+.|.+...+++.+.||++.+.++.+ +
T Consensus 142 ~a~spDGk~lyVan~~~~~~VsVID~~t~~-------vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 142 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-------FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEECCCCc-------EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 689999998887753 7899999987532 22222110 1 1223354445677888899998888876 3
Q ss_pred eeEEEeCCccccCCccceE-EEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEee---------c-cccceeEEEEe
Q 024451 80 LRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFH---------G-HEGDVNTVKFF 147 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~---------~-~~~~i~~~~~~ 147 (267)
.........+ ......+. ...|..++++++. .+.+|.|.+.|...... ....+. + ..+....++++
T Consensus 211 ~v~~~~~~~~-~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 211 TPEITHTEVF-HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp CCEEEECCCC-SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred eEEEeeccee-ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 3221111001 11112221 2345545565443 45578999999853321 111111 0 11234457888
Q ss_pred cCCCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCC
Q 024451 148 PDGNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTL 215 (267)
Q Consensus 148 ~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~ 215 (267)
|+++.+...-. .+.|.+.|+++.+.+..+.-.. .+.++.++++++ .|++.. .++.|.++|..
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 98887766532 2579999999988776654322 367899999997 666654 48999999999
Q ss_pred ccceeeecc
Q 024451 216 LAKVVLNLG 224 (267)
Q Consensus 216 ~~~~~~~~~ 224 (267)
+++.+..+.
T Consensus 363 t~k~~~~i~ 371 (386)
T 3sjl_D 363 SGEELRSVN 371 (386)
T ss_dssp TCCEEEEEC
T ss_pred CCcEEEEec
Confidence 888776553
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=94.41 Aligned_cols=204 Identities=10% Similarity=0.009 Sum_probs=104.6
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
++..+++++.|+.|..||..... ....+.. +.+.+..+.+++ ..+++++.|+.|+.||.++++....+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-------~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-------IKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-------EEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 57789999999999999976422 1222222 233333334433 4677788999999999988765444321
Q ss_pred cccc-CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 88 EFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 88 ~~~~-~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
.... .....+ +. .+..+++++.|+.++.||.+.+.. ...+..+. ...++|+++.+++++.|+.|..||
T Consensus 78 ~~~~~~~~sp~----~~--~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 78 TIPELVQASPC----RS--SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp CHHHHHTTCSC----C-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCC
T ss_pred cCccccccCce----Ee--cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence 1000 000111 10 233566788899999999875443 33333322 234566788899999999999999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCC---CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCC
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSAD 242 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~ 242 (267)
.++++.+..+.... .....++.+. ..+++++.+|.++.||..+++.+.... ...++. ...++++
T Consensus 147 ~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----~~~pv~~~~~~~~d 214 (369)
T 2hz6_A 147 TKTRELRWNATYFD-------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-----YASPVVAFYVWQRE 214 (369)
T ss_dssp SSSSSCCCEEEEEE-------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-----CSSCEEEEEECTTS
T ss_pred CCCCCEEEeEeccc-------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-----CCCceEEEEEecCC
Confidence 99987654432110 1112223322 457778899999999998887765432 233443 3345555
Q ss_pred CC
Q 024451 243 GS 244 (267)
Q Consensus 243 ~~ 244 (267)
|.
T Consensus 215 g~ 216 (369)
T 2hz6_A 215 GL 216 (369)
T ss_dssp SC
T ss_pred ce
Confidence 54
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=3.5e-10 Score=92.81 Aligned_cols=176 Identities=15% Similarity=0.038 Sum_probs=92.8
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 139 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 139 (267)
..+++++.|+.|+.||..+++....+.. ..+.+..+. .++.++++++.|+.|+.||.+.... ......+..
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~ 80 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIP 80 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC------CCEEECTTTCCEEEC-----CC-SEECSCCHH
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceE-cCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCc
Confidence 4688999999999999999987766532 112222122 2345677788999999999865432 222221211
Q ss_pred -ceeE-EEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 140 -DVNT-VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 140 -~i~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.+.+ ..+. .+..+++++.|+.+..||.++++.+..+... ....++|++..+++++.++.|+.||..++
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---------FADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSS
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---------CcccccccCCEEEEEecCCEEEEEECCCC
Confidence 1111 1111 3456778889999999999998875443211 01345668889999999999999999887
Q ss_pred ceeeecccccCCccceEEEEEECCCC---CeEEEeECCCcEEEEec
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADG---SALCTGSWDTNLKIWAF 260 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~sgs~dg~i~~w~~ 260 (267)
+....... ......+++++. ..++.++.||.+..|+.
T Consensus 151 ~~~W~~~~------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 151 ELRWNATY------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp SCCCEEEE------EEECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred CEEEeEec------ccccCccccCCccccceEEEECCCCEEEEEEC
Confidence 76543311 011223333332 45667888999999986
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.00 E-value=3.3e-08 Score=80.71 Aligned_cols=232 Identities=9% Similarity=-0.030 Sum_probs=135.4
Q ss_pred eeeCCCCCeEEEcc----------CCCeEEEeecCCCCCCCCCCcccccccCC-------eeeEEEEEEecCCCeeEEEe
Q 024451 3 CAFSPTGQSVACGG----------LDSVCSIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITS 65 (267)
Q Consensus 3 ~~~~~~g~~l~~~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~ 65 (267)
++|+|||+.+..+. .+++|.+||..... ..+.+.-+ ...-..+.++|++. +++.+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVa 141 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFF 141 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEE
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCccccccCCCcceEEEcCCCC-EEEEE
Confidence 57999998888875 37899999987532 22222111 01234578899875 55655
Q ss_pred eC--CCeEEE--EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC----cccceE----E
Q 024451 66 SG--DQTCVL--WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV----ASRAVR----T 133 (267)
Q Consensus 66 ~~--d~~v~i--wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----~~~~~~----~ 133 (267)
.. +..|.+ +|..+ ...+.. +.. + . +.+...+.+++.+.|+.+.+.+... ..+... .
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v----~~~--~-~--~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~ 209 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKS----ASC--F-H--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEEC----SSC--C-C--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred ccCCCCeEEEEEEchhh---ceEEEC----CCc--e-E--EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence 43 467888 99876 222211 111 0 0 1222344566777888888888764 122110 0
Q ss_pred eeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------C-CCCcEEEEEEccCCCEEEEEEe
Q 024451 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------N-EIPHVTSIAFSISGRLLFAGYS 205 (267)
Q Consensus 134 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~-~~~~v~~~~~s~~~~~l~~g~~ 205 (267)
+.....+. . .+++..++..+. +.+.+.|+....... ....... . .......+.++++++.++.+..
T Consensus 210 i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 210 QNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM-KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp SCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE-ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred eeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE-EEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 11111222 3 566666665566 899999986532111 1100000 0 0001112679999998877644
Q ss_pred -C--------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe-EEEeE-CCCcEEEEecCceEe
Q 024451 206 -N--------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTGS-WDTNLKIWAFGGYRR 265 (267)
Q Consensus 206 -d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~sgs-~dg~i~~w~~~~~~~ 265 (267)
+ +.+.++|+.+.+.+..+. -......++|+|||+. +++.. .++.|.++|+..++.
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~-----vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPIS-----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCE-----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEE-----CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 2 356799999888765542 1225788999999984 55666 599999999876553
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=5.6e-07 Score=74.45 Aligned_cols=235 Identities=15% Similarity=0.118 Sum_probs=134.0
Q ss_pred CCCCeEE-EccCCCeEEEeecCCCCCCCCCCccccccc------C-CeeeEEEEEEecCCCeeEEEeeCC------CeEE
Q 024451 7 PTGQSVA-CGGLDSVCSIFNLNSPTDKDGNLPVSRMLS------G-HKGYVSCCQYVPDEDTHLITSSGD------QTCV 72 (267)
Q Consensus 7 ~~g~~l~-~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~~~~~~~l~s~~~d------~~v~ 72 (267)
+++++|+ ++..++.|.++|+.... ....+.+++. . ....-+.+...|++ +++++..+ +.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p---~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNP---REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCT---TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCC---CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEE
Confidence 6776655 46678899999985321 1112222221 1 11234456667865 56666555 7899
Q ss_pred EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-------------------CCCeEEEEeCCCcccceEE
Q 024451 73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-------------------CDSTARLWDTRVASRAVRT 133 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-------------------~d~~i~iwd~~~~~~~~~~ 133 (267)
+.|.++.+.+..+.... +-...-..+.+++..+ .+++.. .+..|.+||+.. .+....
T Consensus 168 vlD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~t 243 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHS 243 (462)
T ss_dssp EECTTTCCEEEECCSBC--TTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEE
T ss_pred EEECCCCeEEEEEccCC--CCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeE
Confidence 99999887666553210 1111122456676554 555553 367999999975 344444
Q ss_pred eecc--ccceeEEEE--ecCCCEEEEeeC------CCcEEEEeCCCCeeeE--EE--EeecCCCC-----------CCcE
Q 024451 134 FHGH--EGDVNTVKF--FPDGNRFGTGSD------DGTCRLFDIRTGHQLQ--VY--YQQHGENE-----------IPHV 188 (267)
Q Consensus 134 ~~~~--~~~i~~~~~--~~~~~~l~~~~~------d~~i~iwd~~~~~~~~--~~--~~~~~~~~-----------~~~v 188 (267)
+..- ......+.| +|+++++.++++ +++|.+|..+.++-.. .+ ........ ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 4421 123345555 999998877664 5688877765443111 11 00000000 1235
Q ss_pred EEEEEccCCCEEEEEEe-CCeEEEEeCCccceeeecccccCC-------c---c---ceEEEEEECCCCCeEEEeE
Q 024451 189 TSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNS-------H---E---GRITCLGLSADGSALCTGS 250 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~-------~---~---~~v~~~~~~p~~~~l~sgs 250 (267)
..+.+|+++++|.++.. .+.|.+||+...........+... | . +.=..++++|||++|.++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 78899999999988874 689999997522111111111111 1 0 1135688999999998877
No 224
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=7.4e-07 Score=69.09 Aligned_cols=203 Identities=8% Similarity=0.058 Sum_probs=128.1
Q ss_pred eEEEEEEecCCCeeEEEeeC--CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 48 YVSCCQYVPDEDTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
....+.|+|++ .+.++.+. ++.|++.|..+++....+.. +.......+.+. +++++++...++.+.++|..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM----DDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec----CCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 35678888864 44444443 68999999999876665431 111222345554 45788888889999999987
Q ss_pred CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 205 (267)
. .+.+..+..... ....+.++++.++++..+++|.++|..+.+....+.-.........+..+.|. ++...+....
T Consensus 95 t-~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 95 T-LSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp T-TEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred C-CcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 4 344555532111 22345667776665556889999999987766554322111111235677777 6755555556
Q ss_pred CCeEEEEeCCccceeeeccc--cc-----C--CccceEEEEEECCCCCe-EEEeECCCcEEEEecC
Q 024451 206 NGDCYVWDTLLAKVVLNLGS--LQ-----N--SHEGRITCLGLSADGSA-LCTGSWDTNLKIWAFG 261 (267)
Q Consensus 206 dg~i~i~d~~~~~~~~~~~~--~~-----~--~~~~~v~~~~~~p~~~~-l~sgs~dg~i~~w~~~ 261 (267)
++.|.+.|..+++.+..+.. +. . .-......++|+|+++. ++++...+.+..-++.
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 78999999998887654421 10 0 01135689999999764 5566667777776653
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.95 E-value=9.7e-07 Score=67.84 Aligned_cols=192 Identities=12% Similarity=0.109 Sum_probs=121.6
Q ss_pred eeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
.....+.|+ + +.+..+.+.++ .|+.+|+++++....+.. +....-..+.+. ++++++....++.+.++|.
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 345667777 3 46677777766 899999999976665532 111112234444 4577788888999999998
Q ss_pred CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
++. +.+..+.-. . ....+.++++.++....+++|.++|..+.+....+.-.........+..+.|. +|...+...
T Consensus 115 ~t~-~~~~ti~~~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 115 RNL-RQVRSFNYD-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp TTC-CEEEEEECS-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ccC-cEEEEEECC-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 753 455555422 1 22334456776666555788999999988766554332111111234557776 676666666
Q ss_pred eCCeEEEEeCCccceeeeccc--ccC------CccceEEEEEECCCCCeEEEeEC
Q 024451 205 SNGDCYVWDTLLAKVVLNLGS--LQN------SHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~--~~~------~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
.+..|.+.|..+++.+..+.. +.. .-....+.||++|+++.|...+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999998887654321 111 11346789999998777666554
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=3.8e-07 Score=80.99 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=122.6
Q ss_pred ceeeCCCCCeEEEccCCCe-------------EEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeC
Q 024451 2 TCAFSPTGQSVACGGLDSV-------------CSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG 67 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~-------------v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~ 67 (267)
..+|+ ||+.|+.++.+.. |.+|++..+... ..+...... |......+.++|++..++++.+.
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 254 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN 254 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEES
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc
Confidence 45799 9999998887743 888987653211 112222333 45556788999987655555443
Q ss_pred ---CCeEEEEeCCCCe--eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---CeEEEEeCCCccc-ceEEeeccc
Q 024451 68 ---DQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---STARLWDTRVASR-AVRTFHGHE 138 (267)
Q Consensus 68 ---d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~~~-~~~~~~~~~ 138 (267)
++.|.+||+.++. ..... .+....... +++.++++++....+ +.|..+++..... ..+.+..|.
T Consensus 255 ~~~~~~i~~~d~~~~~~~~~~l~------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 327 (693)
T 3iuj_A 255 STSGNRLYVKDLSQENAPLLTVQ------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER 327 (693)
T ss_dssp SSSCCEEEEEETTSTTCCCEEEE------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred CCCCcEEEEEECCCCCCceEEEe------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC
Confidence 3589999987652 22221 122223332 444456666665544 5788888864321 234555566
Q ss_pred cceeEEEEecCCCEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEE
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYV 211 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i 211 (267)
..+. .|+++++.|+....++ .|.+||+..+.. ..+. ......+..+.+++++..++....+ +.++.
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~----~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~ 400 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVA----LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYR 400 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEEC----CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEE
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEee----cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEE
Confidence 5554 8899998887766543 689999875432 2221 1122346677788888877776665 89999
Q ss_pred EeCCccc
Q 024451 212 WDTLLAK 218 (267)
Q Consensus 212 ~d~~~~~ 218 (267)
||+..++
T Consensus 401 ~d~~~g~ 407 (693)
T 3iuj_A 401 FEPKSGA 407 (693)
T ss_dssp ECTTTCC
T ss_pred EECCCCe
Confidence 9986554
No 227
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=2.6e-06 Score=65.54 Aligned_cols=190 Identities=7% Similarity=0.028 Sum_probs=120.6
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 126 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 126 (267)
.....+.|.. +.+.++.+.++.|+.+|+++++....+ . . ....-..+.+. ++++++....++.+.++|.++
T Consensus 55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R---L-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E---C-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT
T ss_pred cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C---C-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCc
Confidence 3445677753 567788889999999999998655443 1 1 11111224443 467788888899999999874
Q ss_pred cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451 127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 206 (267)
.+.+..+.. ...-..++ ++++.|+....+++|.++|..+.+....+.-.........+..+.|. +|...+....+
T Consensus 126 -l~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 126 -PQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp -TEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred -CcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 345555542 22223344 56777766666889999999988776654432222222345667776 77655555578
Q ss_pred CeEEEEeCCccceeeeccc--c-------cCCccceEEEEEECCCCCeEEEeE
Q 024451 207 GDCYVWDTLLAKVVLNLGS--L-------QNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 207 g~i~i~d~~~~~~~~~~~~--~-------~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
..|.+.|..+++.+..+.. + ...-....+.||++|+++.|...+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 8999999998877644321 1 111234679999999765554444
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=2.8e-06 Score=70.36 Aligned_cols=200 Identities=10% Similarity=0.097 Sum_probs=117.7
Q ss_pred cCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeC-Cccc-cCCccceEEEEEeCCCCeEEEEecCC------CeEEEEe
Q 024451 56 PDEDTHLITSSGDQTCVLWDITTG----LRTSVFG-GEFQ-SGHTADVLSVSISGSNSRMFVSGSCD------STARLWD 123 (267)
Q Consensus 56 ~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd 123 (267)
++...+++++-.++.|.+.|+.+. +...++. .+.. .........+...+. + +++++..+ +.+.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEE
Confidence 555556667778899999999754 3333331 0010 000112334445543 4 66665444 7899999
Q ss_pred CCCcccceEEeeccc---cceeEEEEecCCCEEEEee-------------------CCCcEEEEeCCCCeeeEEEEeecC
Q 024451 124 TRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGS-------------------DDGTCRLFDIRTGHQLQVYYQQHG 181 (267)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~ 181 (267)
.++. +.+....... .--..+-|+|+++.+++.. .+.+|.+||+.+++....+.. .
T Consensus 171 ~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v--g 247 (462)
T 2ece_A 171 HYSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL--G 247 (462)
T ss_dssp TTTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES--C
T ss_pred CCCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec--C
Confidence 8743 3454443211 2234688899999888874 368999999998765554322 1
Q ss_pred CCCCCcEEEEEE--ccCCCEEEEEEe------CCeEEEEeCCccce--eee--ccc------c---cCC---ccceEEEE
Q 024451 182 ENEIPHVTSIAF--SISGRLLFAGYS------NGDCYVWDTLLAKV--VLN--LGS------L---QNS---HEGRITCL 237 (267)
Q Consensus 182 ~~~~~~v~~~~~--s~~~~~l~~g~~------dg~i~i~d~~~~~~--~~~--~~~------~---~~~---~~~~v~~~ 237 (267)
. .......+.| +|+++++.++++ ++.|.+|....++. ... +.. + ... -......+
T Consensus 248 ~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 248 E-ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp T-TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred C-CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 1 1112345555 999999888875 45777654322110 000 000 0 000 01346778
Q ss_pred EECCCCCeEEEeEC-CCcEEEEecC
Q 024451 238 GLSADGSALCTGSW-DTNLKIWAFG 261 (267)
Q Consensus 238 ~~~p~~~~l~sgs~-dg~i~~w~~~ 261 (267)
.+||||++|.++.. .+.|.+|++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECS
T ss_pred EECCCCCEEEEEeCCCCEEEEEEec
Confidence 99999999987666 7789999974
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=1.3e-06 Score=77.16 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=136.0
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-----eeeEEEEEEecCCCeeEEEee-----CCCeEEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-----KGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDIT 77 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~ 77 (267)
++..++.++.|+.|..+|..... ..-.+..+ ...+.+.-... ++..++..+ .++.|+.+|..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~-------~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGK-------EVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC-------EEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEECCCCC-------EEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECC
Confidence 45677888889999999976422 11111111 01111100011 333333332 27999999999
Q ss_pred CCeeEEEeCCcccc---------------------------CCccceEEEEEeCCCCeEEEEecCCC-------------
Q 024451 78 TGLRTSVFGGEFQS---------------------------GHTADVLSVSISGSNSRMFVSGSCDS------------- 117 (267)
Q Consensus 78 ~~~~~~~~~~~~~~---------------------------~~~~~i~~~~~~~~~~~~~~s~~~d~------------- 117 (267)
+++.+..+...... +.......+.+++..+.++ .+..++
T Consensus 199 tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 199 TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCC
T ss_pred CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCC
Confidence 99877655321100 0000112456666555444 444332
Q ss_pred ------eEEEEeCCCcccceEEee--ccc-------cceeEEEEecCC---CEEEEeeCCCcEEEEeCCCCeeeEEEEee
Q 024451 118 ------TARLWDTRVASRAVRTFH--GHE-------GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 179 (267)
Q Consensus 118 ------~i~iwd~~~~~~~~~~~~--~~~-------~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 179 (267)
.|..+|.++..... .++ .|. ....-+....+| +.++.++.+|.+.++|.++++.+......
T Consensus 278 d~~~~~sv~AlD~~TG~~~W-~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~ 356 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKW-HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFV 356 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEE-EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred CCeeeEEEEEEECCCCCEEE-EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccccc
Confidence 58888887554322 222 121 112223333467 67899999999999999999876543211
Q ss_pred cCC------CCCCcE------------------------EEEEEccCCCEEEEEEeC-----------------------
Q 024451 180 HGE------NEIPHV------------------------TSIAFSISGRLLFAGYSN----------------------- 206 (267)
Q Consensus 180 ~~~------~~~~~v------------------------~~~~~s~~~~~l~~g~~d----------------------- 206 (267)
... ....++ ..++++|++..+++...+
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 000 000000 256789998888876542
Q ss_pred --------------------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 207 --------------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 207 --------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|.|+.||+.+++.+.... +..++....+...+..++.++.||.+++||...
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-----CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 789999998888765542 222333344556778888899999999999743
No 230
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=1.3e-05 Score=64.17 Aligned_cols=243 Identities=7% Similarity=-0.006 Sum_probs=136.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc-----------------cccCCeeeEEEEEEecCCCeeEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-----------------MLSGHKGYVSCCQYVPDEDTHLIT 64 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~~~l~s 64 (267)
.++++++|+++.++..++.|..|+..... ..... ...........+++.++++. |+.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSG-----FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTC-----EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCc-----eEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 36788899878888888999999765321 00000 00011234677888873344 455
Q ss_pred eeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-----------------CCeEEEEeCCCc
Q 024451 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-----------------DSTARLWDTRVA 127 (267)
Q Consensus 65 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----------------d~~i~iwd~~~~ 127 (267)
+...+.|..+|..++.... +..............+++.+.+++++++... ++.|..+|....
T Consensus 97 ~d~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQ-LATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEECEE-EESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEEEE-ecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 5555568888877543222 2111100011235677787524566665432 366888876432
Q ss_pred ccceEEeeccccceeEEEEecCCCEEE-EeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
. ...+.........++++|+++.+. +-...+.|..|++.... ....+.. .. . ...++++++|++.++..
T Consensus 176 ~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~---g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 176 E--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP---N-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp E--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS---S-EEEEEECTTSCEEEEEE
T ss_pred E--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC---C-CCCeEECCCCCEEEEec
Confidence 2 222221123456799999998554 44567899999987531 1222221 11 2 57789999998777765
Q ss_pred e----------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 205 S----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 205 ~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
. .+.|..+|.. ++.+..+..........+.++++ .++++.++...++.|..+++.
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 5 4678888864 44433322110000123555665 467666766678888888764
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=1.3e-05 Score=61.02 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=119.3
Q ss_pred eeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
.....+.|.+ +.+..+.+.+ ..|+.+|+++++........ ....-..+.+. +++++.....++.+.++|.
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVP----PPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 4456788876 4566676665 48999999999776654321 11111234443 4678888888999999998
Q ss_pred CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
++ .+.+..+... ..-..+ .++++.|+....+++|.++|..+.+....+.-.........+..+.+. +|...+...
T Consensus 93 ~t-l~~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 93 AT-LTPRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp TT-TEEEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred Cc-CcEEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 74 3445555422 222334 356665555455889999999988766554332211112245566665 666666565
Q ss_pred eCCeEEEEeCCccceeeecc--ccc-------CCccceEEEEEECCCCCeEEEeEC
Q 024451 205 SNGDCYVWDTLLAKVVLNLG--SLQ-------NSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~--~~~-------~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
.+..|.+.|..+++.+..+. .+. ..-....+.+|++|+++.|...+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78899999999888764432 111 112346799999997666555543
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.76 E-value=1.9e-06 Score=71.58 Aligned_cols=203 Identities=15% Similarity=0.188 Sum_probs=119.0
Q ss_pred eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++|+|||++|..+.. +++|.+.|..... ....+.-- + +....|.+...+++.+.||.+.+.+..++.
T Consensus 182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~k-------vv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKT-------FDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SEECTTSSEEEEEECSSSCEEEEEETTTTE-------EEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred EEEcCCCCEEEEEecCCCCeEEEEECCCCe-------EEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 579999999888764 6889999986521 22222110 0 123344444556677778887777775443
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee-------c---cccceeEEEEecC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH-------G---HEGDVNTVKFFPD 149 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~-------~---~~~~i~~~~~~~~ 149 (267)
........+..+.......+.+.+...+++++ ...+.+.+.|....... ...+. . .......+.++|+
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 22111000000111111123345444444444 45678888887432110 00000 0 0112234789999
Q ss_pred CCEEEEeeC----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCCcc
Q 024451 150 GNRFGTGSD----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLA 217 (267)
Q Consensus 150 ~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~ 217 (267)
++.+.+... ++.|.++|+.+.+.+..+.... ....+.|+|+++ .+++.. .++.|.++|..+.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 886655432 3579999999988776654321 367899999999 888877 5899999999988
Q ss_pred ceeeec
Q 024451 218 KVVLNL 223 (267)
Q Consensus 218 ~~~~~~ 223 (267)
+.+..+
T Consensus 404 kvv~tI 409 (426)
T 3c75_H 404 EELRSV 409 (426)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 877553
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.75 E-value=3.2e-05 Score=60.01 Aligned_cols=218 Identities=8% Similarity=0.017 Sum_probs=127.3
Q ss_pred eeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++++++ .++++-..++.|.+++..... ..............+++.|.++.+.++-...+.|.+++.+....
T Consensus 41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 41 LAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence 5678754 555566667899999875421 11111122234677889887665566666678999999875433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecC--CCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEE-EEee
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--DSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRF-GTGS 157 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l-~~~~ 157 (267)
...... .......+++++.+++++++... .+.|..++... . ....+. ........++++|+++.+ ++-.
T Consensus 114 ~~~~~~-----~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 114 RVLFDT-----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EEEECS-----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C-CCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEC-----CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C-CcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 222211 11345788888766777766544 46888887652 2 222221 222346789999986655 4555
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
..+.|.++|....... .+.. . ......++.. .+..+++...++.|..+|..+++.+..+. .........+
T Consensus 187 ~~~~I~~~~~~g~~~~-~~~~-~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~---~g~~~~p~gi 256 (267)
T 1npe_A 187 GTHRAECLNPAQPGRR-KVLE-G----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH---PHKQTRLYGI 256 (267)
T ss_dssp TTTEEEEEETTEEEEE-EEEE-C----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC---CSSCCCCCCE
T ss_pred CCCEEEEEecCCCceE-EEec-C----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc---ccccccccee
Confidence 6789999998754322 2222 1 1224566654 34444444456899999988776654442 1111124556
Q ss_pred EECCCCC
Q 024451 238 GLSADGS 244 (267)
Q Consensus 238 ~~~p~~~ 244 (267)
++.|++.
T Consensus 257 ~~~~~~~ 263 (267)
T 1npe_A 257 TIALSQC 263 (267)
T ss_dssp EEECSCC
T ss_pred eecCccC
Confidence 7777653
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.70 E-value=2e-06 Score=69.56 Aligned_cols=203 Identities=10% Similarity=0.051 Sum_probs=116.4
Q ss_pred ceeeCCCCCeEEEccC-----CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---CCCeEEE
Q 024451 2 TCAFSPTGQSVACGGL-----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVL 73 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~v~i 73 (267)
.++++++|+++++-.. ++.|.+||+..... ............+...+..+++.|+++..+++-. .++.|.+
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v 149 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR 149 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence 4678999987776433 57899999764210 0000000011123345677888876555556655 6789999
Q ss_pred EeCCCCeeEEEeCCc--cc--------cC--------------CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC---
Q 024451 74 WDITTGLRTSVFGGE--FQ--------SG--------------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--- 126 (267)
Q Consensus 74 wd~~~~~~~~~~~~~--~~--------~~--------------~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~--- 126 (267)
||+.++.....+... .. .+ ....++.+++++....++++......+..++...
T Consensus 150 ~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 150 VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN 229 (343)
T ss_dssp EETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC
T ss_pred EECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC
Confidence 999877655444220 00 00 0123567888875434444333333454444210
Q ss_pred cc----cceE--EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451 127 AS----RAVR--TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 200 (267)
Q Consensus 127 ~~----~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 200 (267)
.. .... ...++.+....++++++|+++++...++.|.+||..+++. ..+... .....+..++|++++.++
T Consensus 230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~---~~~~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTD---EKLSWTDSFNFGSDGYLY 305 (343)
T ss_dssp TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEEC---GGGSCEEEEEECTTSCEE
T ss_pred CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEEC---CceecCCeeEECCCCcEE
Confidence 00 0000 1123444567899999999999999999999999855553 222221 123457899999988877
Q ss_pred EEEEeCCeE
Q 024451 201 FAGYSNGDC 209 (267)
Q Consensus 201 ~~g~~dg~i 209 (267)
++....+.+
T Consensus 306 v~~~~~~~~ 314 (343)
T 2qe8_A 306 FDCNQLHHS 314 (343)
T ss_dssp EEECCGGGS
T ss_pred EEeCccccc
Confidence 777654433
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=4.3e-05 Score=59.18 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=121.3
Q ss_pred eeeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCccccc--ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 3 CAFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRM--LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
++|+|+|.++++.+. +++|++.|..... ..+. +..+.. ...+.+. ++...++.-.++.+.++|..+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-------v~~~i~l~~~~f-geGi~~~--g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGK-------VENIHKMDDSYF-GEGLTLL--NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCC-------EEEEEECCTTCC-EEEEEEE--TTEEEEEETTCSEEEEEETTT
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCC-------EEEEEecCCCcc-eEEEEEe--CCEEEEEEecCCEEEEEECCC
Confidence 578898887887764 6799999986532 2222 222211 1223443 445555556789999999999
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-c-cc---cceeEEEEecCCCEE
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-G-HE---GDVNTVKFFPDGNRF 153 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~---~~i~~~~~~~~~~~l 153 (267)
.+.+..+... .++ . ..++. ...+++++. .++.|.++|.... +..+.+. + +. ...+.+.|. ++..+
T Consensus 96 ~~v~~~i~~g--~~~-g--~glt~--Dg~~l~vs~-gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 96 LSNIKNFTHQ--MKD-G--WGLAT--DGKILYGSD-GTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp TEEEEEEECC--SSS-C--CEEEE--CSSSEEEEC-SSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CcEEEEEECC--CCC-e--EEEEE--CCCEEEEEC-CCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 8777766422 111 1 22333 345666665 5789999998753 3344333 1 11 135678887 67666
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEEeec--------CCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCc
Q 024451 154 GTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLL 216 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~ 216 (267)
+....++.|.+.|..+++.+..+.-.. ..........++|+|+++.+ +++...+.|+..++..
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 666678899999999998776654311 00111246899999998755 4555678888888654
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.66 E-value=4.7e-06 Score=73.83 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=111.3
Q ss_pred EEEEecCCCeeEEEeeCCC-------------------eEEEEeCCCCeeEEEeCCcccc--C--CccceEEEEEeCCCC
Q 024451 51 CCQYVPDEDTHLITSSGDQ-------------------TCVLWDITTGLRTSVFGGEFQS--G--HTADVLSVSISGSNS 107 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~--~--~~~~i~~~~~~~~~~ 107 (267)
.+.+.|+.+ +++.++.++ .|..||..+++.+..+...... . ............ ++
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G 316 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DG 316 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CC
Confidence 466777654 577777665 4999999999877765421100 0 111111111111 22
Q ss_pred ---eEEEEecCCCeEEEEeCCCcccceEEee-cc---------------------------cc-----------ceeEEE
Q 024451 108 ---RMFVSGSCDSTARLWDTRVASRAVRTFH-GH---------------------------EG-----------DVNTVK 145 (267)
Q Consensus 108 ---~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~---------------------------~~-----------~i~~~~ 145 (267)
..++.++.+|.++++|.++... +.... .+ .. .-..++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCE-eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 3678899999999999875432 21110 00 00 011367
Q ss_pred EecCCCEEEEeeC---------------------------------------------CCcEEEEeCCCCeeeEEEEeec
Q 024451 146 FFPDGNRFGTGSD---------------------------------------------DGTCRLFDIRTGHQLQVYYQQH 180 (267)
Q Consensus 146 ~~~~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~ 180 (267)
++|+...+++... ++.|..||+.+++....+....
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~ 475 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT 475 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC
Confidence 8888777765422 3779999999998765543211
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe-EEEe
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA-LCTG 249 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~sg 249 (267)
......++..+..++.|+.||.|+.||.++++.+.++..-...... .+.|..+|+. +++.
T Consensus 476 ------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~---p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 476 ------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAA---PVTYSVDGEQYVTFM 536 (689)
T ss_dssp ------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC---CEEEEETTEEEEEEE
T ss_pred ------CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccC---ceEEEECCEEEEEEE
Confidence 1122345667889999999999999999999988665321111222 3455677774 4433
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.60 E-value=1.3e-05 Score=71.03 Aligned_cols=241 Identities=14% Similarity=0.098 Sum_probs=133.3
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-C--CeeeEEEEEEecCCCeeEEEee-----CCCeEEEEeCCCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-G--HKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITTG 79 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~--h~~~v~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~~~ 79 (267)
.+..++.++.|+.|..+|...... .-..... . ....+.+.-... ++..++..+ .++.|+.||..++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQR-----AWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE-----EEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEccCCEEEEEECCCCCE-----eeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 456688888999999999754221 0000000 0 001111000011 233333322 3789999999999
Q ss_pred eeEEEeCCcccc--------------------------CCccceEEEEEeCCCCeEEEEecCCC----------------
Q 024451 80 LRTSVFGGEFQS--------------------------GHTADVLSVSISGSNSRMFVSGSCDS---------------- 117 (267)
Q Consensus 80 ~~~~~~~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~~s~~~d~---------------- 117 (267)
+.+..+...-.. +....-..+.+++..+ ++..+..++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCce
Confidence 877655311000 0000112456665444 455555554
Q ss_pred ---eEEEEeCCCcccceEEeec--cc-------cceeEEEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecC-
Q 024451 118 ---TARLWDTRVASRAVRTFHG--HE-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG- 181 (267)
Q Consensus 118 ---~i~iwd~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~- 181 (267)
.|..+|.++..... .++. |. ..........+|+ .++.++.+|.+.++|.++++.+........
T Consensus 273 y~~~v~AlD~~TG~~~W-~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVW-HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTTEEEEEETTTCCEEE-EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeeEEEEEccCCceeE-eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 38999987654333 2321 21 1112222233554 788999999999999999987632211000
Q ss_pred ----------------------CCCC-----------CcEEEEEEccCCCEEEEEEe-----------------------
Q 024451 182 ----------------------ENEI-----------PHVTSIAFSISGRLLFAGYS----------------------- 205 (267)
Q Consensus 182 ----------------------~~~~-----------~~v~~~~~s~~~~~l~~g~~----------------------- 205 (267)
.... ..-..++|+|+...+++...
T Consensus 352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence 0000 00123688898888877643
Q ss_pred ----------------------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 206 ----------------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 206 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|.|+.||+.+++....... ..++....+...+..++.|+.||.++.||..
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-----VTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-----CCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 37799999988887655421 1222222344567888899999999999864
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=1.6e-05 Score=70.31 Aligned_cols=185 Identities=10% Similarity=0.081 Sum_probs=110.8
Q ss_pred EEEEecCCCeeEEEeeCCC-------------------eEEEEeCCCCeeEEEeCCcccc----CCccceEEEEEeCCCC
Q 024451 51 CCQYVPDEDTHLITSSGDQ-------------------TCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNS 107 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 107 (267)
.+.+.|+++ .++.+..++ +|..+|..+++.+..+...... ........+.... ++
T Consensus 247 ~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG 324 (677)
T 1kb0_A 247 SMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG 324 (677)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred ceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence 456777654 566555543 5999999999877665421100 0001111122211 23
Q ss_pred ---eEEEEecCCCeEEEEeCCCcccceEEeecc-----------ccce------------------------eEEEEecC
Q 024451 108 ---RMFVSGSCDSTARLWDTRVASRAVRTFHGH-----------EGDV------------------------NTVKFFPD 149 (267)
Q Consensus 108 ---~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~i------------------------~~~~~~~~ 149 (267)
..++.++.+|.+.++|.++.+ .+..+... ...+ ..++++|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 578889999999999987543 33222100 0000 15688898
Q ss_pred CCEEEEeeC-------------------------------------------CCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451 150 GNRFGTGSD-------------------------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIP 186 (267)
Q Consensus 150 ~~~l~~~~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (267)
...+++... .+.|..||+.+++.+..+... .
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~---- 477 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--S---- 477 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--S----
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--C----
Confidence 887776543 278999999999876544321 1
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 247 (267)
.+....++..+..++.++.+|.+++||..+++.+..+.. .+...-..+.+.++|+.++
T Consensus 478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~---~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT---GTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC---SSCCCSCCEEEEETTEEEE
T ss_pred CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC---CCCcccCCEEEEeCCEEEE
Confidence 123334567788889999999999999999998876532 1211122344557776443
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.60 E-value=9.4e-05 Score=57.36 Aligned_cols=231 Identities=7% Similarity=-0.054 Sum_probs=132.6
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 89 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 89 (267)
.+|..+.. +.|+.+++...... .......+.........+++.++++.++++-..++.|..++.........+..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-- 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-- 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--
T ss_pred cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC--
Confidence 34555443 47888887642210 00001111112345678899987666666666778999999976543333221
Q ss_pred ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC---CCcEEEEe
Q 024451 90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFD 166 (267)
Q Consensus 90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd 166 (267)
.......+++++.++.++++....+.|.+++..... ..............++++|++..+..+.. .+.|..++
T Consensus 77 ---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 77 ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp ---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred ---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 123467888887667788887888899999875321 11112211245688999996555444432 46888888
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
++.. ....+.. ........+++++++..|..+. ..+.|..+|........... .... -..++.. +..
T Consensus 153 ~dg~-~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----~~~~-P~gi~~d--~~~ 220 (267)
T 1npe_A 153 MDGT-NRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----GLQY-PFAVTSY--GKN 220 (267)
T ss_dssp TTSC-CCEEEEC----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----CCCS-EEEEEEE--TTE
T ss_pred cCCC-CcEEEEE----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----CCCC-ceEEEEe--CCE
Confidence 7643 2222221 1123578999999877665554 56899999986433221111 1111 2355543 444
Q ss_pred EEEeE-CCCcEEEEecC
Q 024451 246 LCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 246 l~sgs-~dg~i~~w~~~ 261 (267)
|..+. ..+.|..++..
T Consensus 221 lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 221 LYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEeCC
Confidence 44444 45788888864
No 240
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.57 E-value=0.00014 Score=57.76 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=125.1
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCC-eEEEEeCCCCe
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQ-TCVLWDITTGL 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~-~v~iwd~~~~~ 80 (267)
++++++|+++++-..++.|..||.... ..... .-......+++.+++. ++++.. .++ .|..+|..++.
T Consensus 37 ia~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 37 LASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCC--------EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC
T ss_pred EEECCCCCEEEEeCCCCeEEEECCCCc--------eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe
Confidence 578899998888778889988876431 11111 1123577888988765 444433 333 46666766665
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---------ccccceeEEEEecCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGN 151 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~ 151 (267)
....... ........++.. .....+++...++.|..+|.......+.... ......+.+ +|+++
T Consensus 107 ~~~~~~~----~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 107 VETLLTL----PDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp EEEEEEC----TTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred EEEEEeC----CCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 4332211 111122333333 3445556655678888888653211111000 011123445 77876
Q ss_pred EE-EEeeCCCcEEEEeCCC-Cee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 152 RF-GTGSDDGTCRLFDIRT-GHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 152 ~l-~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
.+ ++-...+.|..+|+.. ++. ...+.. . .....++++++|++.++-...+.|.++|.. ++... .....
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~ 251 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE 251 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc
Confidence 55 4555678999999864 321 112211 1 123567889999887777778899999964 33321 11111
Q ss_pred CCccceEEEEEEC---CCCCeEEEeECC
Q 024451 228 NSHEGRITCLGLS---ADGSALCTGSWD 252 (267)
Q Consensus 228 ~~~~~~v~~~~~~---p~~~~l~sgs~d 252 (267)
. .....++++|. |+++.|..++..
T Consensus 252 ~-~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 Q-GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp G-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred c-ccCCceEEEEecccCCCCEEEEECCC
Confidence 1 12346889998 898777665543
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=5.3e-05 Score=58.29 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=110.1
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+.|+ ++.++++.|.+|.|+++|+.... ..+. +.+. ..--.+.+ .++.+.+..-.++.+.+||.++.+.
T Consensus 60 L~~~-~~~Ly~stG~~g~v~~iD~~Tgk-------v~~~~l~~~-~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 60 LVFH-QGHFFESTGHQGTLRQLSLESAQ-------PVWMERLGN-IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEE-TTEEEEEETTTTEEEECCSSCSS-------CSEEEECTT-CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred EEEE-CCEEEEEcCCCCEEEEEECCCCc-------EEeEECCCC-cceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 3455 57889999999999999987532 1111 2221 11112333 3444455555689999999999888
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEEe
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~~ 156 (267)
+..+... + . -..++.. ..+++++. .++.|.++|..+.. ..+.+.. +. ..++.+.|. +|..++..
T Consensus 129 ~~ti~~~---~-e--GwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 129 ERTTRYS---G-E--GWGLCYW--NGKLVRSD-GGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EEEEECS---S-C--CCCEEEE--TTEEEEEC-SSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEEeCC---C-c--eeEEecC--CCEEEEEC-CCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 7777532 1 1 1334443 45566665 47899999987533 3433321 22 234677776 77766666
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeec--------CCCCCCcEEEEEEccCCCEE-EEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLL-FAG 203 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l-~~g 203 (267)
..+..|.+.|.++++.+..+.-.. ..........++++|+++.| ++|
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 678899999999998776554321 11122356899999976544 444
No 242
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=3.6e-05 Score=59.18 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=110.3
Q ss_pred eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+.|+ ++.++.+.|.+| .|+++|+.... ..+.+.-. ...+.....+.++.+.+..-.++.+.+||.++.+
T Consensus 48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgk-------v~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 48 FFYR-NGYFYESTGLNGRSSIRKVDIESGK-------TLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEECTTTCC-------EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred EEEE-CCEEEEECCCCCCceEEEEECCCCc-------EEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 4566 678889998876 89999986532 22211111 1122222222344444455568899999999988
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~ 155 (267)
.+..+... + .+ ..++. ...+++++.+ ++.|.++|..+.. ....+.. .. ..++.+.|. +|..++.
T Consensus 119 ~~~ti~~~---~-eG--~glt~--dg~~L~~SdG-s~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 119 QVRSFNYD---G-EG--WGLTH--NDQYLIMSDG-TPVLRFLDPESLT-PVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EEEEEECS---S-CC--CCEEE--CSSCEEECCS-SSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEEECC---C-Cc--eEEec--CCCEEEEECC-CCeEEEEcCCCCe-EEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 77776532 1 11 23333 3455666554 6789999987533 3333322 11 234567776 6776666
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecC-------CCCCCcEEEEEEccCCCEEEEEE
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.-.+..|.+.|.++++.+..+..... .........++|+|+++.|++.+
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 66788999999999988766543211 01123468999999877666654
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.49 E-value=2.2e-05 Score=62.57 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=121.9
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 89 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 89 (267)
..+..++.++.+..+|.. .. .......+...+.++...+++ .+..++.++.|..+|.. +.....+..
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~-- 174 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKT-- 174 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEEC--
T ss_pred CEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEec--
Confidence 345556677778888754 11 111111222233444444433 46678888999999988 654443321
Q ss_pred ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451 90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169 (267)
Q Consensus 90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 169 (267)
....+.++.... ++.+++.. +.+..+| .... ....+......+.++...+++. +..++.++.+..+|. +
T Consensus 175 ---~~~~~~~~~~d~-~g~l~v~t---~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 175 ---NDAITSAASIGK-DGTIYFGS---DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-D 243 (330)
T ss_dssp ---SSCCCSCCEECT-TCCEEEES---SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-T
T ss_pred ---CCCceeeeEEcC-CCEEEEEe---CEEEEEC-CCCc-EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-C
Confidence 122344444443 44555443 7788888 4333 3333433445677888887775 455667788888885 4
Q ss_pred CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451 170 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
++....+... . ..+..+...+++ .|..++.+|.|+.+|. .++...... .....+.++...++|++.+ |
T Consensus 244 g~~~~~~~~~--~---~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~----~~~~~~~~~~~d~~g~l~~-g 311 (330)
T 3hxj_A 244 GTEKWRFKTG--K---RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE----TGSWIIATPVIDENGTIYF-G 311 (330)
T ss_dssp SCEEEEEECS--S---CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE----CSSCCCSCCEECTTCCEEE-E
T ss_pred CCEeEEeeCC--C---CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE----cCCccccceEEcCCCEEEE-E
Confidence 4444333211 1 112234445455 5666778889999995 444443321 1233456677777877655 7
Q ss_pred ECCCcEEEEecC
Q 024451 250 SWDTNLKIWAFG 261 (267)
Q Consensus 250 s~dg~i~~w~~~ 261 (267)
+.+|.+.+....
T Consensus 312 t~~G~~~~~~~~ 323 (330)
T 3hxj_A 312 TRNGKFYALFNL 323 (330)
T ss_dssp CTTSCEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 889999988643
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.48 E-value=8.6e-06 Score=65.01 Aligned_cols=217 Identities=16% Similarity=0.113 Sum_probs=120.2
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
..+|. +..++.++.|..|| .... .......+...+.++...+++ .+..++.+ |..+|. ++.....+
T Consensus 28 d~~g~-l~v~t~~~~l~~~d-~~g~-------~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 28 AKNGT-IYLGSSNKNLYAIN-TDGS-------VKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CTTSC-EECSSTTTTTEEEC-TTSC-------EEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGS
T ss_pred ccCCe-EEEEcCCCEEEEEC-CCCc-------EEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEE
Confidence 34554 55666788888888 4321 111222233445555555433 45556555 888885 44322211
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 165 (267)
. ..........+. ++. +..++.++.+..+|.. .. .......+...+.++...+++. +..++.++.+..+
T Consensus 94 ~-----~~~~~~~~~~~~--~~~-l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 94 D-----TKKAIVSDFTIF--EDI-LYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp C-----C-----CCEEEE--TTE-EEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred E-----CCCCcccCceEE--CCE-EEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 1 011111122232 333 4567778899999976 33 3333333444566677776766 5557778999999
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
|.. ++....+... ...+.++..++++.+.++. +.|+.+| ..++...... .....+.++...++|.+
T Consensus 163 d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~----~~~~~~~~~~~~~~g~l 228 (330)
T 3hxj_A 163 NPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY----AGYWTVTRPAISEDGTI 228 (330)
T ss_dssp CTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC----CSSCCCSCCEECTTSCE
T ss_pred CCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc----cCCcceeceEECCCCeE
Confidence 988 6654433211 1234556667777755544 8899999 5555443321 12344667777887765
Q ss_pred EEEeECCCcEEEEecCc
Q 024451 246 LCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 246 l~sgs~dg~i~~w~~~~ 262 (267)
.+ ++.++.+..++..+
T Consensus 229 ~v-~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 229 YV-TSLDGHLYAINPDG 244 (330)
T ss_dssp EE-EETTTEEEEECTTS
T ss_pred EE-EcCCCeEEEECCCC
Confidence 55 56667776666433
No 245
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.46 E-value=2.3e-05 Score=69.07 Aligned_cols=245 Identities=11% Similarity=0.125 Sum_probs=123.9
Q ss_pred ceeeCC-CCCeEEEccCCC-----------eEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEee-C
Q 024451 2 TCAFSP-TGQSVACGGLDS-----------VCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSS-G 67 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~-----------~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~-~ 67 (267)
.+++.| +|++++.||.+. .+.+||..... ......+ ..+.....++.+.+++ .+++.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-----w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-----VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-----BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-----EEeCcccCCCCCCccccccCCCCC-CEEEeCCCC
Confidence 355667 889999987653 57788876432 1111111 1222233345556655 4666776 4
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-CC-----CeEEEEeCCCcccceEEeec-----
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-CD-----STARLWDTRVASRAVRTFHG----- 136 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-~d-----~~i~iwd~~~~~~~~~~~~~----- 136 (267)
+..+.+||..+..-...-. .. ....-.++.+. +++++++.|+ .+ ..+.+||..... ...+..
T Consensus 264 ~~~v~~yd~~t~~W~~~~~--~~--~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p 336 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPD--MQ--VARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNP 336 (656)
T ss_dssp TTCEEEEEGGGTEEEECCC--CS--SCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGG
T ss_pred CCceEEecCcCCceeECCC--CC--ccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccc
Confidence 5689999998764333211 11 11111233333 3567888888 34 468899986422 222210
Q ss_pred cccceeEEEEecCCCEEEEeeCC---------CcEEEEeCCCCeeeEEEEeecC----CCCCCcEEEEEEc-cCCCEEEE
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFS-ISGRLLFA 202 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s-~~~~~l~~ 202 (267)
....-....+..++..++.++.| ..+..||..+............ ......-.++.|. .++++++.
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 00000001112334444444443 4577888876653321111100 0001122445554 36778888
Q ss_pred EEeCC-----------eEEEEeCCccceeeec-ccccCCccceEEEEEECCCCCeEEEeECC-----------CcEEEEe
Q 024451 203 GYSNG-----------DCYVWDTLLAKVVLNL-GSLQNSHEGRITCLGLSADGSALCTGSWD-----------TNLKIWA 259 (267)
Q Consensus 203 g~~dg-----------~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----------g~i~~w~ 259 (267)
|+.++ .+.+||..+.+-.... ..++ ....-.++...|++++++.|+.+ ..+.+|+
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp--~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY--FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS--SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC--CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 87543 6778887654322111 1111 11112345567899999999865 4578887
Q ss_pred cC
Q 024451 260 FG 261 (267)
Q Consensus 260 ~~ 261 (267)
..
T Consensus 495 p~ 496 (656)
T 1k3i_A 495 PE 496 (656)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.42 E-value=0.00032 Score=57.14 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=122.7
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
++..+..++.++.|..+|..... ..-...+.+.. ...... . ++ .++.++.++.|..+|..+++....+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~-----~~W~~~~~~~~--~~~p~~-~-~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGT-----VAWQTKVAGEA--LSRPVV-S-DG-LVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCC-----EEEEEECSSCC--CSCCEE-E-TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-----EEEEEeCCCce--EcCCEE-E-CC-EEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 34567777888999999875421 11111111110 000111 1 22 577788899999999999876655432
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-cc--ee---EEEEec--CCCEEEEeeCC
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GD--VN---TVKFFP--DGNRFGTGSDD 159 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~--i~---~~~~~~--~~~~l~~~~~d 159 (267)
..............+. ++ .++.+..++.+..+|.+............. .. +. .+...| .+..+..++.+
T Consensus 172 ~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~ 248 (376)
T 3q7m_A 172 DMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN 248 (376)
T ss_dssp CC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT
T ss_pred CCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC
Confidence 1100000000111122 23 456678889999999875443222111110 00 00 011111 24567777889
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+.+..+|.++++.+.... . ........ ++..+..++.+|.|+.+|..+++........ ....+.....
T Consensus 249 g~l~~~d~~tG~~~w~~~---~----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~ 316 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRE---L----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL---LHRLLTSPVL 316 (376)
T ss_dssp SCEEEEETTTCCEEEEEC---C----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT---TTSCCCCCEE
T ss_pred cEEEEEECCCCcEEeecc---C----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc---CCCcccCCEE
Confidence 999999999887653321 1 12333332 4667888888999999999888766543211 1111111222
Q ss_pred CCCCCeEEEeECCCcEEEEecC
Q 024451 240 SADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+..|..++.+|.+..++..
T Consensus 317 --~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 317 --YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp --ETTEEEEECTTSEEEEEETT
T ss_pred --ECCEEEEEeCCCeEEEEECC
Confidence 24677778888988888753
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.40 E-value=0.00011 Score=62.92 Aligned_cols=189 Identities=8% Similarity=0.010 Sum_probs=116.4
Q ss_pred CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe--CCCCeEEEEe-----------------cCCC
Q 024451 57 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-----------------SCDS 117 (267)
Q Consensus 57 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~s~-----------------~~d~ 117 (267)
++...+++...+..|.+-|+.+.+...++... + ......+.+. |.....++++ -.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP--N--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS--S--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--C--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 44334445555678999999998766644211 1 1235566663 4444444432 3355
Q ss_pred eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC-------------------------------------
Q 024451 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG------------------------------------- 160 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------------------- 160 (267)
.+.+.|.... +...++.--. .-..++++|+|+++++.+.+.
T Consensus 176 ~vtvID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 176 VFTAVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred eEEEEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 7888888743 3444443212 346688899999988877543
Q ss_pred -cEEEEeCCC--Cee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccce------------eeec
Q 024451 161 -TCRLFDIRT--GHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV------------VLNL 223 (267)
Q Consensus 161 -~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~------------~~~~ 223 (267)
.|.+.|.++ ++. +..+... .....+.++|||++++++. .+..|.++|..+.+. ....
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence 367777766 333 2222111 1246789999999887765 578999999876531 1111
Q ss_pred ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 224 ~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.... .-..++|+|+|....+.-.|+.|.+|++..
T Consensus 328 ----~vG~-gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ----ELGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ----BCCS-CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ----CCCC-CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1122 346789999995555667799999999754
No 248
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.39 E-value=1.5e-05 Score=65.04 Aligned_cols=195 Identities=8% Similarity=0.018 Sum_probs=111.9
Q ss_pred ceeeCCCCCeEEEccC--CCeEEE--eecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGL--DSVCSI--FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~--d~~v~~--w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
.++|+|||++|..+.. +..+.+ +|... ..... ..+ |..+.|++...+++.+.|+.+.+.|++
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-------v~~i~-v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD-------DQLTK-SAS------CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE-------EEEEE-CSS------CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh-------ceEEE-CCC------ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 3679999999888764 467888 88743 00000 001 112235455566777888888888887
Q ss_pred C----CeeEEEeC-CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEee-------cc---ccce
Q 024451 78 T----GLRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFH-------GH---EGDV 141 (267)
Q Consensus 78 ~----~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~-------~~---~~~i 141 (267)
+ ..+..... .....+ ..+. . .+..+.++ ..+. +.+.+.|..... .....+. .+ ....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg-~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCS-SQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBC-SCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred cccccCCeEEEEeeeeeeCC-CCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 6 22111000 001111 1122 2 44444443 3444 888888875321 1111110 00 1112
Q ss_pred eEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE-EEEEE-eCCeEE
Q 024451 142 NTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL-LFAGY-SNGDCY 210 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~-~dg~i~ 210 (267)
..+.++|+++.+..+.. +..+.++|+.+.+.+..+.... ....+.|+|+++. +++.. .++.|.
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeEE
Confidence 23789999987776432 2356699999987665433211 3678999999985 45555 489999
Q ss_pred EEeCCccceeeec
Q 024451 211 VWDTLLAKVVLNL 223 (267)
Q Consensus 211 i~d~~~~~~~~~~ 223 (267)
++|+.+.+.+..+
T Consensus 341 VID~~t~kvv~~I 353 (368)
T 1mda_H 341 IYDAASDQDQSSV 353 (368)
T ss_dssp EEESSSCEEEEEC
T ss_pred EEECCCCcEEEEE
Confidence 9999998887655
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.37 E-value=1.1e-05 Score=69.05 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=122.3
Q ss_pred CCCCeEEEcc-CCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEE-e-cCCCeeEEEee---------------
Q 024451 7 PTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQY-V-PDEDTHLITSS--------------- 66 (267)
Q Consensus 7 ~~g~~l~~~~-~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~-~-~~~~~~l~s~~--------------- 66 (267)
+||++|.... .++.|.+-|+..- ++.. .+.. ......+++ . |++ .+++.++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~-------~~~~ii~ip~-g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM-------KCDAILEIPN-AKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT-------EEEEEEECSS-CCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTC
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc-------eEeeEEeCCC-CCCCcceeeeecCCC-cEEEEecccccccCCCCccccc
Confidence 3776655544 4566888888652 2222 2221 123455665 3 654 4566553
Q ss_pred ---CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---------------------------
Q 024451 67 ---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------------------------- 116 (267)
Q Consensus 67 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------------------------- 116 (267)
.++.+.+.|.++.+....+... + ...-+.+++.+...++++...
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vg---g---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVS---G---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEES---S---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEEeC---C---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 3467889999987655443210 0 112233444333333332221
Q ss_pred ----------CeEEEEeCCCc-ccc-eEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee---------E
Q 024451 117 ----------STARLWDTRVA-SRA-VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL---------Q 174 (267)
Q Consensus 117 ----------~~i~iwd~~~~-~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---------~ 174 (267)
+.|.+.|.+.. .+. .+.+.. ....+++.++|||+++++++ .+.+|.++|+.+.+.. .
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 23666666531 112 233321 23468899999999876655 6789999999864210 0
Q ss_pred EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc----------cceeeecccccCCccce-----EEEEEE
Q 024451 175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AKVVLNLGSLQNSHEGR-----ITCLGL 239 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~-----v~~~~~ 239 (267)
...+ . .-......++|+++|...++-.-|++|..||... .+.+..+ ..|..+ -..+.+
T Consensus 323 v~~~-v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki----dV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 323 VVAE-P--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL----DVHYQPGHLKTVMGETL 395 (595)
T ss_dssp EEEC-C--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE----ECSSCEEEEEETTTTST
T ss_pred eEEE-c--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe----ecccccccceeccceEe
Confidence 1111 1 1123468999999994445566799999999765 2222222 123222 122356
Q ss_pred CCCCCeEEEeEC
Q 024451 240 SADGSALCTGSW 251 (267)
Q Consensus 240 ~p~~~~l~sgs~ 251 (267)
+|||++|++...
T Consensus 396 ~~DGk~l~~~Nk 407 (595)
T 1fwx_A 396 DATNDWLVCLSK 407 (595)
T ss_dssp TCCSSEEEEEES
T ss_pred CCCCCEEEEcCC
Confidence 899999988654
No 250
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00059 Score=52.50 Aligned_cols=209 Identities=11% Similarity=0.148 Sum_probs=124.0
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
.+.+-...+..+++.|+++.+.+....++.|...|.. +.....+.. +-......+++.+ +++++++.-.++.+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----~g~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----DFVKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----SSCSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----CCCCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 3445556789999999877666667778889888987 544444321 1123456677764 456666666677888
Q ss_pred EEeCCCccc--ceEEe------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC---CeeeEEEEee--cCCCCCCc
Q 024451 121 LWDTRVASR--AVRTF------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQ--HGENEIPH 187 (267)
Q Consensus 121 iwd~~~~~~--~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~--~~~~~~~~ 187 (267)
++++..... ..... ...+.....++|+|.++.|.++.+.....+|.++. .+.+...... ........
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 887653332 11111 12345578999999987777777665666666541 1122222110 00112234
Q ss_pred EEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCc------cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 188 VTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH------EGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 188 v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.+++++|... +++....+..|..+|.. ++... ...+.... -..-..++|.|+|++.++ |... .+|.|
T Consensus 175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~-~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f 249 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIG-EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRF 249 (255)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEE-EEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEE
T ss_pred ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEE-EEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEE
Confidence 68999998755 44555567888889965 33322 22222211 124578999999986665 5555 44543
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.29 E-value=0.00058 Score=51.95 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=109.7
Q ss_pred eeeCCCCCeEEEccCCC--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 3 CAFSPTGQSVACGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+.|++ +.++.+.|.+| .|+++|+.... ......+.++.. --.+.+. ++.+.+..-.++.+.+||.++.+
T Consensus 26 L~~~~-~~LyestG~~g~S~v~~vD~~tgk-----v~~~~~l~~~~f-geGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 26 LFYLR-GHLYESTGETGRSSVRKVDLETGR-----ILQRAEVPPPYF-GAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEET-TEEEEEECCTTSCEEEEEETTTCC-----EEEEEECCTTCC-EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred EEEEC-CEEEEECCCCCCceEEEEECCCCC-----EEEEEeCCCCcc-eeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 35665 77888888864 89999986532 111111222211 1123333 34555555668999999999988
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cc---cceeEEEEecCCCEEEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HE---GDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~ 155 (267)
.+..+... .. -..++. ...+++++-+ ++.|.++|..+.. ..+.+.- +. ..++.+.+. +|..++.
T Consensus 97 ~~~ti~~~----~~--Gwglt~--dg~~L~vSdg-s~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan 165 (243)
T 3mbr_X 97 PRARFRYP----GE--GWALTS--DDSHLYMSDG-TAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEWV-NGELLAN 165 (243)
T ss_dssp EEEEEECS----SC--CCEEEE--CSSCEEEECS-SSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEEeCC----CC--ceEEee--CCCEEEEECC-CCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence 87777532 11 234443 3456666655 7789999987533 3333332 11 235667765 6766666
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecC--------CCCCCcEEEEEEccCCCEEEEEE
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHG--------ENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.-.+..|.+.|.++++.+..+.-... .........++++|+++.|+..+
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 65788999999999988766542211 01123468899999876655544
No 252
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.14 E-value=0.0017 Score=51.60 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=102.7
Q ss_pred EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc-cCC-ccceEEEEE---eCCCCeEEEEec-----------
Q 024451 51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGH-TADVLSVSI---SGSNSRMFVSGS----------- 114 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~-~~~i~~~~~---~~~~~~~~~s~~----------- 114 (267)
+++|.+....++++.-..++|..||...+....+...... .+. ...+..+.+ .+. ++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccc
Confidence 5788886666666666899999999975533332211110 011 123467778 454 77776533
Q ss_pred --CCCeEEEEeCC---CcccceE-Eeeccc-----------cceeEEEEecCCCEEEEeeCC-CcEEEEeCCCCeeeEEE
Q 024451 115 --CDSTARLWDTR---VASRAVR-TFHGHE-----------GDVNTVKFFPDGNRFGTGSDD-GTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 115 --~d~~i~iwd~~---~~~~~~~-~~~~~~-----------~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~ 176 (267)
.+..|..+|+. ....... .+.... ..+..++..++|+..++++.- +.|...+.+.. ....+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence 25779999987 3332211 111111 247889999999999988877 78777776543 33333
Q ss_pred EeecC-CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 177 YQQHG-ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 177 ~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
..... .........++++|++..|++....|.|.-+|+..
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 22211 11223467899999999998887799999999774
No 253
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=0.00027 Score=62.31 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=115.5
Q ss_pred eeeCCCCCeEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CC-----CeEEEEe
Q 024451 3 CAFSPTGQSVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GD-----QTCVLWD 75 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d-----~~v~iwd 75 (267)
.++.++|++++.||. +..+.+||..... ......+...... .++...+++ .+++.|+ .+ ..+.+||
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~-----W~~~~~~~~~R~~-~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDS-----WIPGPDMQVARGY-QSSATMSDG-RVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTE-----EEECCCCSSCCSS-CEEEECTTS-CEEEECCCCCSSSCCCCEEEEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCc-----eeECCCCCccccc-cceEEecCC-eEEEEeCcccCCcccccceEeC
Confidence 356789999999994 5689999976421 0000111111111 233444555 4566666 44 5689999
Q ss_pred CCCCeeEEEeC---CccccCCccceEEEEEeCCCCeEEEEecCC---------CeEEEEeCCCcccceEEeecccc----
Q 024451 76 ITTGLRTSVFG---GEFQSGHTADVLSVSISGSNSRMFVSGSCD---------STARLWDTRVASRAVRTFHGHEG---- 139 (267)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~---- 139 (267)
..+..-...-. ..........+ + ..++++++.++.+ ..+..||..... .......+..
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~----~-~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGL----Y-RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGV 394 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGG----G-TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEE
T ss_pred CCCCcceeCCCccccccccccccce----e-ecCCceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCcccccccc
Confidence 98765333210 00000000000 0 0123333444333 356778876432 1122211111
Q ss_pred -----ceeEEEEec-CCCEEEEeeCCC-----------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451 140 -----DVNTVKFFP-DGNRFGTGSDDG-----------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 140 -----~i~~~~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
.-.++.|.. +++.++.|+.++ .+.+||..+.+-.... . ........-.+.+..+++++++.
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~-~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-S-NGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-T-TCCSSCCBSCEEEECTTSCEEEE
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-c-CCCCCCcccCCeEECCCCCEEEE
Confidence 123444433 677888887543 6778887765432211 0 01111111234456689999999
Q ss_pred EEeC-----------CeEEEEeCCcccee--eecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 203 GYSN-----------GDCYVWDTLLAKVV--LNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 203 g~~d-----------g~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
|+.+ ..+.+||..+.+-. ..+......| .+..+.|+|++++.|+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h----s~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH----SISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT----EEEEECTTSCEEEEECC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc----cHhhcCCCcEEEecCCC
Confidence 8754 46889997654321 1111111223 23445799999999985
No 254
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.11 E-value=0.0023 Score=51.96 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=123.0
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-------eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++..+..++.++.|..+|..... ..-...+... ...+.+.-.. .+ ..++.++.++.|..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGK-----EIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC-----EEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEETTTCC
T ss_pred ECCEEEEEcCCCeEEEEEccCCc-----eeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEECCCCC
Confidence 45567777888899999875422 1001111100 1222221111 23 357788899999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce-----eEEEEecCCCEEEE
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV-----NTVKFFPDGNRFGT 155 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~ 155 (267)
....+.... .......+. ++ .++.++.++.|..+|.+.... .-......... ...... +..++.
T Consensus 125 ~~W~~~~~~-----~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~--~~~v~~ 193 (376)
T 3q7m_A 125 VAWQTKVAG-----EALSRPVVS--DG-LVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSLRGESAPTTA--FGAAVV 193 (376)
T ss_dssp EEEEEECSS-----CCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCE-EEEEECCC-----CCCCCCEEE--TTEEEE
T ss_pred EEEEEeCCC-----ceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceeecCCCCcEEE--CCEEEE
Confidence 665443211 001111122 23 456677889999999875443 22222211110 112222 456778
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCC--CCcEEEEEEc--cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENE--IPHVTSIAFS--ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
++.++.+..+|.++++.+........... ...+..+.-. ..+..+.+++.+|.++.+|..+++.......
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~------ 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL------ 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC------
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC------
Confidence 88899999999998877644322110000 0000000001 1246777777899999999988876654321
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.....+.. ++..+..++.++.+..++.
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEET
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEEC
Confidence 12233333 3556677778888888875
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.08 E-value=0.0024 Score=50.84 Aligned_cols=186 Identities=10% Similarity=0.019 Sum_probs=106.7
Q ss_pred EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe-CCccc-------------cCCccceEEEEEeCCCCeEEEEecCC
Q 024451 51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQ-------------SGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~-------------~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
.+.+.+++ .+++++..++.|..||..++...... ..... ......+..+++.+.+++++++...
T Consensus 23 ~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~- 100 (322)
T 2fp8_A 23 SFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY- 100 (322)
T ss_dssp CEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-
T ss_pred EEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-
Confidence 45677754 45777888899999998765332211 10000 0011246778887535666655443
Q ss_pred CeEEEEeCCCcccceEEeec-----cccceeEEEEec-CCCEEEEeeC-----------------CCcEEEEeCCCCeee
Q 024451 117 STARLWDTRVASRAVRTFHG-----HEGDVNTVKFFP-DGNRFGTGSD-----------------DGTCRLFDIRTGHQL 173 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~ 173 (267)
..+..+|.... ....+.. .....+.+++.+ +|+..++-.. ++.|..+|..+++..
T Consensus 101 ~~i~~~d~~~g--~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 101 YHLSVVGSEGG--HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TEEEEECTTCE--ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCEEEEeCCCC--EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 44778876422 1222211 112367899999 8887776432 367888887766532
Q ss_pred EEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccce--eeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKV--VLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
.. .... .....++++++++.|..+ ..++.|+.|+...... ...+.. ..+ -..+++.++|++.++..
T Consensus 179 ~~-~~~~-----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 179 LL-LKEL-----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----IPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp EE-EEEE-----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----CSS-EEEEEECTTSCEEEEEE
T ss_pred Ee-ccCC-----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----CCC-CCCeEECCCCCEEEEec
Confidence 22 1111 124678999999866655 4568999999764211 111111 112 56789999998777654
Q ss_pred C
Q 024451 251 W 251 (267)
Q Consensus 251 ~ 251 (267)
.
T Consensus 248 ~ 248 (322)
T 2fp8_A 248 E 248 (322)
T ss_dssp E
T ss_pred C
Confidence 3
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.01 E-value=0.0021 Score=55.65 Aligned_cols=138 Identities=16% Similarity=0.091 Sum_probs=78.5
Q ss_pred eEEEEeCCCcccceEEee--cccc----ceeE---EEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC--
Q 024451 118 TARLWDTRVASRAVRTFH--GHEG----DVNT---VKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-- 183 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~~~~--~~~~----~i~~---~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 183 (267)
.|..+|.++... +-.++ .|.. .+.. +...++|+ .++.++.+|.+.++|.++++.+.........+
T Consensus 273 ~v~Ald~~tG~~-~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcE-EEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 588888875443 22222 1211 1111 22224674 57778899999999999998765432111000
Q ss_pred ------CCCcE--------------------------EEEEEccCCCEEEEEEe--------------------------
Q 024451 184 ------EIPHV--------------------------TSIAFSISGRLLFAGYS-------------------------- 205 (267)
Q Consensus 184 ------~~~~v--------------------------~~~~~s~~~~~l~~g~~-------------------------- 205 (267)
...++ ..++++|+...+++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 00011 24578888777776543
Q ss_pred -----------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 206 -----------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 206 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|.|+.||..+++....... ..++.+..+...+..+..++.||.+..||..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEE-----SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecC-----CCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 47889999888776654321 1111111112235667778899999999864
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.01 E-value=0.0019 Score=57.07 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=92.9
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEe
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~ 134 (267)
.++.++.|+.|..+|..+++.+..+...... ....+. +..+. ++.+++..+ .++.|..+|.++.....+..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 5777889999999999999877655321000 000110 11111 344444322 25889999987654333221
Q ss_pred e-c-c----------------------------ccceeEEEEecCCCEEEEeeCCC-------------------cEEEE
Q 024451 135 H-G-H----------------------------EGDVNTVKFFPDGNRFGTGSDDG-------------------TCRLF 165 (267)
Q Consensus 135 ~-~-~----------------------------~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~iw 165 (267)
. . . ......+++.|..+.++.++.++ .|.-+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0 0 01112468888888888877665 39999
Q ss_pred eCCCCeeeEEEEeecCCCC----CCcEEEEEEccCCC---EEEEEEeCCeEEEEeCCcccee
Q 024451 166 DIRTGHQLQVYYQQHGENE----IPHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
|.++++....+...+.... ..+.....+..+++ .++.++.+|.++++|..+++.+
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 9999987765543211100 01222223334665 6888899999999999888776
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.00 E-value=0.00099 Score=58.84 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=127.2
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC--eeeEEEEEEecCCCeeEEEee------CCCeEEEEeCCCCe
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGL 80 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~ 80 (267)
+..++.++.|+.|..+|...... .-....... ...+.+--... ++. ++.+. .++.|..+|..+++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v~-~~~-v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKA-----IWSQQTTDPAKPYSITGAPRVV-KGK-VIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCE-----EEEEECSCTTSSCBCCSCCEEE-TTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCE-----eeeeccCCCCCcceecCCCEEE-CCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence 45677788899999998754220 000000000 00111000001 333 44333 26899999999998
Q ss_pred eEEEeCCccccC--------------------------CccceEEEEEeCCCCeEEEEecCCC-----------------
Q 024451 81 RTSVFGGEFQSG--------------------------HTADVLSVSISGSNSRMFVSGSCDS----------------- 117 (267)
Q Consensus 81 ~~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~~~~s~~~d~----------------- 117 (267)
.+..+....... ....-..+.+++..+ ++..+..++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCcee
Confidence 776653210000 000111355665444 444444444
Q ss_pred --eEEEEeCCCcccceEEeec-cc-------cceeEEEEecCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeec----
Q 024451 118 --TARLWDTRVASRAVRTFHG-HE-------GDVNTVKFFPDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQH---- 180 (267)
Q Consensus 118 --~i~iwd~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---- 180 (267)
.|..+|.++.......-.. |. .+.....+..+|+ .++.++.+|.+.++|.++++.+.......
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 4888888765433222111 22 1222223334665 68899999999999999998763321100
Q ss_pred ---CCCCCC------------------------cEEEEEEccCCCEEEEEE-----------------------------
Q 024451 181 ---GENEIP------------------------HVTSIAFSISGRLLFAGY----------------------------- 204 (267)
Q Consensus 181 ---~~~~~~------------------------~v~~~~~s~~~~~l~~g~----------------------------- 204 (267)
...... .-..++++|+...+.+..
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 000000 001257788777665432
Q ss_pred -------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 205 -------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 205 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+|.|+.||+.+++....... ..+.....+...+.+++.|+.||.++.|+..
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccC-----CCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 237899999988887654421 1122222233457788889999999999864
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.94 E-value=0.011 Score=53.37 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=119.8
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc--cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd 123 (267)
...|+++...+++. |..|+.+ -|.+||..++......... ...-....|.++.... ++.+. .|+.++-|..++
T Consensus 262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lW-igt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMW-LGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEE-EEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEE-EEECCCCeEEeC
Confidence 35688888777554 4445555 4888998776533322110 0011235688887775 44444 455666788887
Q ss_pred CCCcccceEEeec-------cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec-C---CCCCCcEEEEE
Q 024451 124 TRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-G---ENEIPHVTSIA 192 (267)
Q Consensus 124 ~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~~~v~~~~ 192 (267)
.... ....+.. ....|.++...++|++ -.|+.++-+..||..+++- ..+.... . ......|.+++
T Consensus 337 ~~~~--~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 337 PIRN--RFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp GGGG--SSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCE-EEECCC------CCSCSCEEEEE
T ss_pred CCcc--cceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCCCccEEEEE
Confidence 6422 1222211 2345888888887764 4577777899999876542 2221111 0 01124688998
Q ss_pred EccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 193 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.++++..|-.|+.++.|..||..+++...-...........|.++...++|++.+.. .+| +..|+.
T Consensus 413 ~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~ 478 (795)
T 4a2l_A 413 VDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNP 478 (795)
T ss_dssp EETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEET
T ss_pred EcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeC
Confidence 888888566677777899999776543221110011234578999999888876643 444 555654
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.88 E-value=0.0066 Score=49.05 Aligned_cols=196 Identities=5% Similarity=-0.043 Sum_probs=115.4
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
....++|.+.++.++.+-...+.|..++++.......... .......+++.+.+++++.+-...+.|.+.+...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-----~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG- 147 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG- 147 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-----CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC-
Confidence 3678899887666555666678899999876543333221 1123456777766778888888888999998753
Q ss_pred ccceEEeeccccceeEEEEecCCCE-EEEeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNR-FGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 204 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~- 204 (267)
......+.........++++|.+.. +++-... +.|...+++... ...+.. ........+++++++..|..+.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~----~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD----THLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCC----SSCSCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEE----CCCCCcceEEEeCCCCEEEEEEC
Confidence 2222222223345688999986554 4444444 788888876432 222111 1223568999998777665554
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
..+.|..+|....... .+.. .....-..+++ ..+.+..+-...+.|..++
T Consensus 223 ~~~~I~~~~~dG~~~~-~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 223 KHHVIERANLDGSHRK-AVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp TTTEEEEEETTSCSCE-EEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCceE-EEEe---CCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 4578999986532211 1110 11122355666 3444445544556666665
No 261
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.86 E-value=0.0052 Score=47.22 Aligned_cols=170 Identities=11% Similarity=0.085 Sum_probs=102.8
Q ss_pred CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 170 (267)
Q Consensus 92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 170 (267)
+-...+..+++++..+.++++...++.|...|.. .+..+.+. +-......+++.+++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 4445688899998777788878888899988875 34444442 11245788899888877666556778888887654
Q ss_pred eeeEEEEee---c-CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc---cceeeeccc---ccCCccceEEEEEEC
Q 024451 171 HQLQVYYQQ---H-GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL---AKVVLNLGS---LQNSHEGRITCLGLS 240 (267)
Q Consensus 171 ~~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~---~~~~~~~~v~~~~~~ 240 (267)
..+...... . ..........++|+|.++.|.++.......+|.... ...+..... ....+...+.+++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 432211111 1 011223468999999998887777665545554321 000000000 001123456889999
Q ss_pred CC-CCeEEEeECCCcEEEEecCce
Q 024451 241 AD-GSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 241 p~-~~~l~sgs~dg~i~~w~~~~~ 263 (267)
|. +++++.....+.+..++..|.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC
T ss_pred CCCCeEEEEECCCCeEEEEcCCCC
Confidence 86 445555566677777776654
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.85 E-value=0.0082 Score=49.21 Aligned_cols=196 Identities=5% Similarity=-0.045 Sum_probs=115.8
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
....++|.+.++.++++-...+.|..++++.......+... ......+++.+..+.++++-...+.|.+.++..
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg- 190 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG- 190 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-----CSCCCCEEEETTTTEEEEEETTTTEEEECBTTS-
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-
Confidence 46688999866666666667788999998866443333211 122345677766777888888788898888753
Q ss_pred ccceEEeeccccceeEEEEecCCCEEE-EeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 204 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~- 204 (267)
......+.........++++|.+..|. +-... +.|..++++.... ..+.. ........+++++++..|..+.
T Consensus 191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~----~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD----THLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC----SSCSCEEEEEEEGGGTEEEEEET
T ss_pred CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEE----CCCCCeeeEEEeCCCCEEEEEEC
Confidence 222222222234568899998665544 43344 6788888764332 22221 1123468999998776665554
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
..+.|..+|....... .+. ......-..+++ ..+.++.+-...+.|..++
T Consensus 266 ~~~~I~~~d~dG~~~~-~~~---~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 266 KHHVIERANLDGSHRK-AVI---SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TTTEEEEECTTSCSCE-EEE---CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCeeE-EEE---ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 4578999986532211 111 011123356666 3455555555566777765
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.84 E-value=0.015 Score=52.30 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=134.7
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
+...++|.+.+.. .+ -|.+|+.....-..-.........-....|.++...+++. |-.|+.++-|..|+..+....
T Consensus 268 i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~ 343 (795)
T 4a2l_A 268 LAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK 343 (795)
T ss_dssp EEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSE
T ss_pred EEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccce
Confidence 4455677755544 33 4778875432100000000000011235688888777653 556777777888887654322
Q ss_pred EEeCCccc-cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---------ccccceeEEEEecCCCE
Q 024451 83 SVFGGEFQ-SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---------GHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 83 ~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~ 152 (267)
........ .-....|.++.... ++.+. .|+.++-|..|+.... ....+. .....|.++...++++.
T Consensus 344 ~~~~~~~~~~l~~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 344 NIRNIPYKNSLSDNVVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQ--RFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp EECCCTTSSSCSCSSEEEEEECT-TSCEE-EEESSSCEEEECTTTC--CEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred EEcCCCCCCCCCCCeeEEEEECC-CCCEE-EEECCCCeEEEcCCCC--cEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 11110000 01234578887764 44444 4666667888887532 222221 01356888888888874
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc---cCC
Q 024451 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL---QNS 229 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---~~~ 229 (267)
+..|+.++-+..+|.++++. ..+...........|.++..++++.+.++.. +.|..||..+.+... .... ...
T Consensus 420 lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~-~~~~~~~~~~ 495 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTT-IEKEKDGTPV 495 (795)
T ss_dssp EEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEE-CCBCTTCCBC
T ss_pred EEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEE-cccccccccc
Confidence 66677777899999887653 2221111111224688898888888666554 458899976654322 1110 011
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
....|.++...++|++.+... +| +..|+.
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~ 524 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGE-EG-LSVFKQ 524 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEES-SC-EEEEEE
T ss_pred CCceEEEEEECCCCCEEEEeC-Cc-eEEEeC
Confidence 235789999999998777543 44 555553
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.0094 Score=49.63 Aligned_cols=242 Identities=10% Similarity=0.107 Sum_probs=122.9
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC----eEEEEeCC
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVLWDIT 77 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~----~v~iwd~~ 77 (267)
++++| ++..|..+...+.|+.+|..... + ..+.........+++.+++..++++-..++ .+...+..
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~-------v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEY-------V-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTE-------E-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCE-------E-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 56777 34444444444788888875421 1 111122344667889887653444433222 23333332
Q ss_pred CCee-EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCE-EE
Q 024451 78 TGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNR-FG 154 (267)
Q Consensus 78 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-l~ 154 (267)
.... ...+. .-.....+++++.++.++++-..++.|..++..... ...... +....-..++|+|++++ ++
T Consensus 214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 2111 01111 011234566776567788777778899999876322 111111 11233578999999994 45
Q ss_pred EeeCCCcEEEEeCCCC--ee--eEEEEeecCC-C---------CCCcEE-EEEEc--------cCCCEEEEEEeCCeEEE
Q 024451 155 TGSDDGTCRLFDIRTG--HQ--LQVYYQQHGE-N---------EIPHVT-SIAFS--------ISGRLLFAGYSNGDCYV 211 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~--~~--~~~~~~~~~~-~---------~~~~v~-~~~~s--------~~~~~l~~g~~dg~i~i 211 (267)
+-...+.|..++.+.. +. ...+...... . ...... .++.. +++.+.++=..++.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 5557788999886532 11 1222221000 0 011123 34442 34555565556778888
Q ss_pred EeCCccceeeeccc----ccC---------CccceEEEEEECCC-CCeEEEeECCCcEEEEec
Q 024451 212 WDTLLAKVVLNLGS----LQN---------SHEGRITCLGLSAD-GSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 212 ~d~~~~~~~~~~~~----~~~---------~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~ 260 (267)
++. .++....... ... ..-..-..++++|+ +.++++-.....|+.+++
T Consensus 367 i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 367 LTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 874 2322211110 000 00113578999994 666665555677877764
No 265
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.80 E-value=0.0082 Score=47.81 Aligned_cols=181 Identities=13% Similarity=0.017 Sum_probs=108.0
Q ss_pred CCeEEEEeCCCCe--eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEE
Q 024451 68 DQTCVLWDITTGL--RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145 (267)
Q Consensus 68 d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 145 (267)
...|+..++.... ....+ ........++|++.+++++.+-...+.|..++..........+.........++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred cCeEEEEECCCCceEEEEEe------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 4568888887642 11111 112345678888777788888888889999987643211122222223467789
Q ss_pred EecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE--eCCeEEEEeCCccceeee
Q 024451 146 FFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 146 ~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~i~d~~~~~~~~~ 222 (267)
+.+. ++.+++-...+.|.+++++.... ..+.. ........++++|.+..|.... ..+.|..+++...... .
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~ 159 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-I 159 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-E
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEe----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-E
Confidence 9874 45556666778999999865432 22221 1123468899998766666554 2578888886532111 1
Q ss_pred cccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCce
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGGY 263 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~~ 263 (267)
+. ...-..-..++++|++..|..+ +..+.|..+++.|.
T Consensus 160 ~~---~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 160 II---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EE---ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 10 0111234789999866655544 45677888888753
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.78 E-value=0.011 Score=48.48 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=113.1
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++|++ ++.++.+-...+.|..++..... ....+.........+++.+.++.+.++-...+.|.+.+++....
T Consensus 121 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 121 LDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 56775 44555555567778777765321 11111111122345667765556566666678888888875443
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d 159 (267)
...+. ..-.....+++++..+.++.+-... +.|...++.. ..............+.++++|+++.| ++-+..
T Consensus 194 ~~l~~-----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 194 KVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EEEEC-----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred EEeec-----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 33332 1223467888887777777776665 7888888753 22222222222346789999865544 455567
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
+.|..+|++.... ..+... .......+++ ..+..+.+-...+.|..+|...+
T Consensus 268 ~~I~~~d~dG~~~-~~~~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHR-KAVISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSC-EEEECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCee-EEEEEC----CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 7899999865332 222221 1234567777 34555666667788888884443
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.77 E-value=0.0054 Score=54.96 Aligned_cols=202 Identities=11% Similarity=0.083 Sum_probs=104.6
Q ss_pred CCee-eEEEEEEe-cCCCeeEEEeeCC----CeEEEEeCCCC-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451 44 GHKG-YVSCCQYV-PDEDTHLITSSGD----QTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 44 ~h~~-~v~~~~~~-~~~~~~l~s~~~d----~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
+|.. .+...+|+ |++..+.++.+.+ ..|+++|+.++ ... .... ......+.|++.+..++.+...+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~~~~----~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---ADKV----SGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC---CCCE----EEECSCCEECSSTTEEEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC---Cccc----cCceeeEEEecCCCEEEEEEECC
Confidence 4443 67888999 9876444444433 35999999987 521 1000 11123567887555544443221
Q ss_pred ----CeEEEEeCCCccc-ceEEee-ccccceeEEEEecCCCEEEEeeC---CCcEEEEeCCCCe-ee--EEEEeecCCCC
Q 024451 117 ----STARLWDTRVASR-AVRTFH-GHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGH-QL--QVYYQQHGENE 184 (267)
Q Consensus 117 ----~~i~iwd~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~~ 184 (267)
..|.++++..... ....+. .+......+.|+|+|++|+..+. ...|.++|+.++. .. ..+... .
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----~ 318 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----E 318 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----C
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----C
Confidence 2577777754321 122222 22234567899999998876552 3468888887652 11 222111 1
Q ss_pred CCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCccceeee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 185 IPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.....++.|+..+.+++.+..+ ..|..+|......... + +.......+..+.+. .+.++++...|+..+||-
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 1223444444334444444433 3677777653211111 0 111112245666665 344566777788777664
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.014 Score=48.68 Aligned_cols=155 Identities=12% Similarity=0.195 Sum_probs=91.6
Q ss_pred EEEEEEec-CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC----eEEEEe
Q 024451 49 VSCCQYVP-DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS----TARLWD 123 (267)
Q Consensus 49 v~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~----~i~iwd 123 (267)
...+++.| +++ .|+.+...+.|+.+|+..+....... .......+++++....++++...++ .+.+.+
T Consensus 139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 35677887 343 45555544889999998765433332 2234677888875554666655333 233333
Q ss_pred CCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451 124 TRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
..........+. .......++++| ++.++++-..++.|..+|...+..... .... .......++|+|++++|..
T Consensus 212 ~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~-~~~~---~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 212 RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL-FTIQ---DSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE-EECS---SSSCCEEEEECTTSSEEEE
T ss_pred CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EEcC---CCCcceeEEEcCCCCEEEE
Confidence 221111112222 123457889999 677777766788999999876553222 2111 1134578999999995554
Q ss_pred E-EeCCeEEEEeCC
Q 024451 203 G-YSNGDCYVWDTL 215 (267)
Q Consensus 203 g-~~dg~i~i~d~~ 215 (267)
. ..++.|+.++..
T Consensus 287 ~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHYILRSDYD 300 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 4 466889887754
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.73 E-value=0.018 Score=49.89 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=78.6
Q ss_pred CeEEEEeCCCcccceEE-eecccc----ceeE-EEEe---cCCC---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--
Q 024451 117 STARLWDTRVASRAVRT-FHGHEG----DVNT-VKFF---PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-- 182 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~~~-~~~~~~----~i~~-~~~~---~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-- 182 (267)
+.|..+|.++....... ...|.. .+.. +.+. .+|+ .++.++.+|.+.++|.++++.+..+......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 57889998765443322 112211 1111 2222 3564 6788899999999999999876543221100
Q ss_pred ---------------------------CCCC-----------cEEEEEEccCCCEEEEEE--------------------
Q 024451 183 ---------------------------NEIP-----------HVTSIAFSISGRLLFAGY-------------------- 204 (267)
Q Consensus 183 ---------------------------~~~~-----------~v~~~~~s~~~~~l~~g~-------------------- 204 (267)
.... .-..++++|+...+++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 0000 001346677655555433
Q ss_pred -------------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 205 -------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 205 -------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+|.|+-||+.+++...+.........+++. ..+..++.|+.||.++.||..
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~-----tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA-----TAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEE-----ETTTEEEEECTTSEEEEEETT
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceE-----eCCCEEEEECCCCcEEEEECC
Confidence 2578999999888776544211111222221 135677779999999999863
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.73 E-value=0.0051 Score=48.91 Aligned_cols=164 Identities=8% Similarity=0.012 Sum_probs=103.3
Q ss_pred EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec----cc--cceeEEEE---ecCCCEEEEee-----------
Q 024451 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----HE--GDVNTVKF---FPDGNRFGTGS----------- 157 (267)
Q Consensus 98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~----~~--~~i~~~~~---~~~~~~l~~~~----------- 157 (267)
.+.+|++..++++++.-..+.|..|+..........+.+ .. ..+..+.+ .|++.++++.-
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 456788777777777778999999997532211112211 11 13578999 68877777533
Q ss_pred --CCCcEEEEeCC---CCeeeEEEEee-cCCC-------CCCcEEEEEEccCCCEEEEEEeC-CeEEEEeCCcccee-ee
Q 024451 158 --DDGTCRLFDIR---TGHQLQVYYQQ-HGEN-------EIPHVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVV-LN 222 (267)
Q Consensus 158 --~d~~i~iwd~~---~~~~~~~~~~~-~~~~-------~~~~v~~~~~s~~~~~l~~g~~d-g~i~i~d~~~~~~~-~~ 222 (267)
.+..+..+|+. +++.....--. .... .......++.+++|+..++++.. +.|..++....... ..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA 175 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence 26789999998 67655432210 0000 11247899999999999999888 88888886533221 11
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.........-..+.++++|+|+.|+....+|.+.-+++.
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 111001111235689999999988877668988888865
No 271
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.70 E-value=0.013 Score=47.11 Aligned_cols=189 Identities=13% Similarity=0.156 Sum_probs=110.4
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC----CC---eEEEEecC--CCeEEEEeCCCcccce
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS----NS---RMFVSGSC--DSTARLWDTRVASRAV 131 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~~~~s~~~--d~~i~iwd~~~~~~~~ 131 (267)
+++....++-+.+||+ +++.+..+.. ..++.+.+.+. .. ..+++.-. +.+|.+|++......+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 4555566778999999 6666655531 33455555431 11 12334444 5789999663222234
Q ss_pred EEeec------cc-cceeEEEE--ecC-CC-EEEEeeCCCcEEEEeCCC---CeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 132 RTFHG------HE-GDVNTVKF--FPD-GN-RFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 132 ~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
..+.. .. ..+..+++ +|. ++ ++++..+++.+..|++.. ++........... ...+..+..++..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~ 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEY 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCC
Confidence 43311 11 45667777 664 44 577778889999999832 2111111111111 1356778889999
Q ss_pred CEEEEEEeCCeEEEEeCCc-----cceeeecccccCCccceEEEEEE--CCCCC-eEEEeE-CCCcEEEEecC
Q 024451 198 RLLFAGYSNGDCYVWDTLL-----AKVVLNLGSLQNSHEGRITCLGL--SADGS-ALCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~--~p~~~-~l~sgs-~dg~i~~w~~~ 261 (267)
..|+.+-++..|..||... .+.+.... .......+..|++ .++++ ||+..+ .+.+..+|+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999987788888652 22332221 1122335788877 56666 666555 46789999874
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.69 E-value=0.014 Score=47.18 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=113.0
Q ss_pred eeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++|++. +.++.+-...+.|..++..... ..............+++.+.++.+.++-...+.|.+.+++....
T Consensus 78 l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 78 LDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 567754 4455555566777777765321 11111111122345677765666666666778899999875543
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEe-eccccceeEEEEecCCCEE-EEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRF-GTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~ 158 (267)
...+. ..-.....++++|..+.++.+-... +.|...++.. . ....+ .......+.++++|+++.| ++-..
T Consensus 151 ~~l~~-----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 151 KVLLW-----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EEEEC-----TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C-SCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEe-----CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-C-CcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 33332 1223457888888777788777666 7888888753 2 22222 1222346789999866554 44456
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.+.|..+|++.... ..+... .......+++ ..+....+-...+.|..+|...
T Consensus 224 ~~~I~~~~~dG~~~-~~~~~~----~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 224 HHVIERANLDGSHR-KAVISQ----GLPHPFAITV-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp TTEEEEEETTSCSC-EEEECS----SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEeCCCCce-EEEEeC----CCCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence 77899999865332 222221 1234567777 3455556666677888887433
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.69 E-value=0.0024 Score=57.16 Aligned_cols=154 Identities=11% Similarity=0.040 Sum_probs=85.8
Q ss_pred ceEEEEEe-CCCCeEEEEecCC----CeEEEEeCCCc-ccceEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEE
Q 024451 96 DVLSVSIS-GSNSRMFVSGSCD----STARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRL 164 (267)
Q Consensus 96 ~i~~~~~~-~~~~~~~~s~~~d----~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i 164 (267)
.+....++ |.+..+..+...+ ..|+++|+... ......+. .....+.|+|+++.|+....| ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56678888 6544443333333 35999998754 31111111 123578999999888776655 25777
Q ss_pred EeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccc-ee--eecccccCCccceEEEE
Q 024451 165 FDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAK-VV--LNLGSLQNSHEGRITCL 237 (267)
Q Consensus 165 wd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~~v~~~ 237 (267)
+++.+++.. ..++.... ......+.|||+|++|+.... ...|+++|+.... .. ..+ .....+...++
T Consensus 252 ~~lgt~~~~~~lv~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---~~~~~~~~~s~ 325 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHN---PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV---RPREKGVRYDV 325 (751)
T ss_dssp EETTSCGGGCEEEEECCC---TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES---SCCCTTCCEEE
T ss_pred EECCCCchhcEEEEecCC---CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe---ecCCCCceEEE
Confidence 888765422 22222111 124568899999998887653 3478888986542 11 111 11223445556
Q ss_pred EECCCCCeEEEeECC--CcEEEE
Q 024451 238 GLSADGSALCTGSWD--TNLKIW 258 (267)
Q Consensus 238 ~~~p~~~~l~sgs~d--g~i~~w 258 (267)
.|+.++.+++....+ +.-+||
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEE
T ss_pred eeeeCCEEEEEeCCCCCCCcEEE
Confidence 655444444444443 344444
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.64 E-value=0.014 Score=46.27 Aligned_cols=179 Identities=11% Similarity=-0.019 Sum_probs=107.5
Q ss_pred CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---ccceEEeeccccceeEEE
Q 024451 69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---SRAVRTFHGHEGDVNTVK 145 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~ 145 (267)
..|+..|+.+......+. .-.....+++++.+++++.+...++.|..++.... ......+.........++
T Consensus 10 ~~I~~i~~~~~~~~~~~~------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp SSEEEEETTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred CeEEEEECCCcceEehhc------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 458888887765443332 22346788898777788888888889999987631 111222222223457889
Q ss_pred EecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-C-CeEEEEeCCccceeee
Q 024451 146 FFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-N-GDCYVWDTLLAKVVLN 222 (267)
Q Consensus 146 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~ 222 (267)
+.+.+ +..++-...+.|.+.|+..... ..+... .......++++|.+..|+.... . +.|..+++..... ..
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~ 157 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 157 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSE-EEEEEC----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCce-EEEEEC----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EE
Confidence 98754 4555656788999999875432 222221 1224688999987666555443 3 6888887643221 11
Q ss_pred cccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~ 262 (267)
+. ...-..-..++++|++..|..+ +..+.|..+++.|
T Consensus 158 ~~---~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 158 LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EE---ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 10 0112345789999876665544 4466888888866
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.61 E-value=0.022 Score=47.48 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=112.0
Q ss_pred EEEEEEecC--CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC---Ce-EEEE
Q 024451 49 VSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD---ST-ARLW 122 (267)
Q Consensus 49 v~~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d---~~-i~iw 122 (267)
...+++.|+ ++. |+.+...+.|+.+|..++....... .......+++++... ++++.... .. +...
T Consensus 141 P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~------~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 141 IWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC------CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred CceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec------CCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 456788874 333 4444444889999987765443321 223467888886544 66665422 11 2222
Q ss_pred eCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
+..........+ ........++++| ++.++++-..++.|..+|..++.....+..... ......++|+|+++.|.
T Consensus 213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEE
T ss_pred ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEE
Confidence 221111100111 1223456788999 677666666788999999886654222222111 12235799999999655
Q ss_pred EE-EeCCeEEEEeCCc--ccee--eecccc--cCCc---------cceEEEEEE---------CCCCCeEEEeECCCcEE
Q 024451 202 AG-YSNGDCYVWDTLL--AKVV--LNLGSL--QNSH---------EGRITCLGL---------SADGSALCTGSWDTNLK 256 (267)
Q Consensus 202 ~g-~~dg~i~i~d~~~--~~~~--~~~~~~--~~~~---------~~~v~~~~~---------~p~~~~l~sgs~dg~i~ 256 (267)
.. ..++.|+.++... .+.. ..+... .... -..-..+++ .++|++.++-...+.|+
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 54 4567899977542 2110 000000 0000 112456888 77777777766677888
Q ss_pred EEecCc
Q 024451 257 IWAFGG 262 (267)
Q Consensus 257 ~w~~~~ 262 (267)
.++..|
T Consensus 369 ~~~~~G 374 (433)
T 4hw6_A 369 VLTPEG 374 (433)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 887655
No 276
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.54 E-value=0.023 Score=45.93 Aligned_cols=140 Identities=12% Similarity=0.108 Sum_probs=79.9
Q ss_pred CCCeEEEEeCCCcccceEEee--c-----cccceeEEEEec--CCC--EEEEeeC--CCcEEEEeCCCCeeeEEEEeecC
Q 024451 115 CDSTARLWDTRVASRAVRTFH--G-----HEGDVNTVKFFP--DGN--RFGTGSD--DGTCRLFDIRTGHQLQVYYQQHG 181 (267)
Q Consensus 115 ~d~~i~iwd~~~~~~~~~~~~--~-----~~~~i~~~~~~~--~~~--~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~ 181 (267)
.+|.|.++|.+........+. + ..-..+.+.+.+ ++. ++++-.. +.+|.+|+++.......+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688899999863221222221 1 112456777766 343 4444333 56888988765432222222221
Q ss_pred CCCCCcEEEEEEccCCCEEEEEE-----------------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451 182 ENEIPHVTSIAFSISGRLLFAGY-----------------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
.........+.+.++|.+.++.. ..|.|+-+|....+.+. ..-..-+.++|+||++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~-------~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-------EGFDFANGINISPDGK 233 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE-------EEESSEEEEEECTTSS
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee-------cCCcccCcceECCCCC
Confidence 12233578999999999888754 13567777753211111 1112358899999998
Q ss_pred eEEEeE-CCCcEEEEecC
Q 024451 245 ALCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 245 ~l~sgs-~dg~i~~w~~~ 261 (267)
.|..+. ..+.|..|++.
T Consensus 234 ~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEEC
Confidence 776654 46778888874
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.49 E-value=0.023 Score=49.13 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
++.+..||..+++.+..+.... .+....+...+..++.++.||.|+.||..+++.+..+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~------~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCC------CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 5789999999988765443211 1111222335667778999999999999998887655
No 278
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.49 E-value=0.0038 Score=55.38 Aligned_cols=205 Identities=9% Similarity=0.006 Sum_probs=107.5
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|++.+. ++++-...+.|..+++........ ....+.........+++.+.++.++++-...+.|.+.++....
T Consensus 410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred EEccccccCeEEEEecCCCeEEEEecCCCCCCcc---eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 456776554 444444567888888754110000 1111111111233456665455555665667889999987654
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEe-eccccceeEEEEecCC-CEEEEee
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDG-NRFGTGS 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~ 157 (267)
....+... ......+++++..+.++++.... +.|...++.. . ....+ ......-+.++++|++ .++++-.
T Consensus 487 ~~~l~~~~-----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 487 RKTLFREQ-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V-DIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp EEEECCCS-----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-C-CCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred eEEEEeCC-----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-C-CeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 43333211 12245566776666666655333 6777776642 2 12222 1122345689999875 4555556
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
..+.|..+|+..... ..+.... ........+++..+ .++++-...+.|..+|..+++.+
T Consensus 560 ~~~~I~~~d~dG~~~-~~~~~~~--~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 560 KLHSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp TTTEEEEECSSSSCC-EEECCCS--SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred CCCeEEEEccCCCce-EEEEecC--CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 778899999865332 2222211 11122344555443 44455556788999987655443
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.47 E-value=0.035 Score=46.24 Aligned_cols=240 Identities=10% Similarity=0.102 Sum_probs=127.0
Q ss_pred ceeeCCC---CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---Ce-EEEE
Q 024451 2 TCAFSPT---GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QT-CVLW 74 (267)
Q Consensus 2 ~~~~~~~---g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~-v~iw 74 (267)
.++++|+ |+++++-.. +.|+.++..... ...+.+.......+++.+++. ++++-... .. +...
T Consensus 143 gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~--------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY--------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp EEEECTTTTTCEEEEECBT-SCEEEEETTTTE--------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred eEEEccccCCCEEEEEeCC-CCEEEEECCCCE--------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 3577874 555555333 788888864311 112222334567889998775 44443311 11 2222
Q ss_pred eCCCCee-EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEecCCC
Q 024451 75 DITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGN 151 (267)
Q Consensus 75 d~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 151 (267)
+...+.. ...+. .-.....+++++.++.++++...++.|+.++..... ....+.. ....-..++|+|+++
T Consensus 213 ~~~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~-~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 213 TRASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT-LTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp CGGGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC-EEEEEEECSCCSSCEEEEECTTSS
T ss_pred ECCCCeecccccc------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe-EEEEEeccCCCCCcccEEEeCCCC
Confidence 2221111 00110 111234566776567777777778889999875322 2122211 112234699999998
Q ss_pred E-EEEeeCCCcEEEEeCCC--Cee--eEEEEeecCC----------CCCCcEEEEEE---------ccCCCEEEEEEeCC
Q 024451 152 R-FGTGSDDGTCRLFDIRT--GHQ--LQVYYQQHGE----------NEIPHVTSIAF---------SISGRLLFAGYSNG 207 (267)
Q Consensus 152 ~-l~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~----------~~~~~v~~~~~---------s~~~~~l~~g~~dg 207 (267)
. +++-...+.|+.++... +.. ...+...... ........+++ .+++.+.++=..++
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 4 45555678899988652 211 1122221010 01123577888 77777777776778
Q ss_pred eEEEEeCCccceeeecccccC----C----------ccceEEEEEEC-CCCCeEEEeECCCcEEEEec
Q 024451 208 DCYVWDTLLAKVVLNLGSLQN----S----------HEGRITCLGLS-ADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 208 ~i~i~d~~~~~~~~~~~~~~~----~----------~~~~v~~~~~~-p~~~~l~sgs~dg~i~~w~~ 260 (267)
.|+.++. .+... .+..... . .-..-..|+++ ++|.++++=.....|+..++
T Consensus 366 ~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 366 TVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 8999985 33222 1111000 0 01124679999 67776666556677887764
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.46 E-value=0.033 Score=45.83 Aligned_cols=188 Identities=9% Similarity=-0.034 Sum_probs=113.7
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeecc
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGH 137 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~ 137 (267)
+|+.+ ....|+..++.......... ....+..+++++.++.++.+-...+.|+.+++.... .........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEe-ccceeEEEccCCcceeEecc------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 44433 34678888887654333321 234577899998778888887788889888875311 112222223
Q ss_pred ccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe--CCeEEEEeC
Q 024451 138 EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDT 214 (267)
Q Consensus 138 ~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~ 214 (267)
......+++.+ .+++.++-...+.|.+.+++....... ... .......++++|.+..|+.... .+.|...++
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~~----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EEC----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-EeC----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 34567889988 455556666778999999875443322 221 1224689999997776665542 367888886
Q ss_pred CccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceE
Q 024451 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYR 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~ 264 (267)
.......-. ...-..-..|+++|++..|..+. ..+.|..+++.|..
T Consensus 233 dG~~~~~~~----~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 233 NGVDIYSLV----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp TSCSCEEEE----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred CCCccEEEE----ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 532221111 11123457899998776665543 45678888887644
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.46 E-value=0.029 Score=45.06 Aligned_cols=202 Identities=12% Similarity=0.187 Sum_probs=112.0
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC----CCe--e-EEEeeC--CCeEEEEeCC
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDT--H-LITSSG--DQTCVLWDIT 77 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~--~-l~s~~~--d~~v~iwd~~ 77 (267)
|...+++...+.+-+.+||+... ....+.. +.++-|..-|. +.. + +++... +++|.+|++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~--------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGK--------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSC--------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred CCccEEEEEcCCCCEEEEcCCCc--------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 34466777777888999998542 2333332 23444444331 111 2 334444 6899999763
Q ss_pred --CCeeEEEeCCcc-ccCCc-cceEEEEE--eCCCCe-EEEEecCCCeEEEEeCCC------cccceEEeeccccceeEE
Q 024451 78 --TGLRTSVFGGEF-QSGHT-ADVLSVSI--SGSNSR-MFVSGSCDSTARLWDTRV------ASRAVRTFHGHEGDVNTV 144 (267)
Q Consensus 78 --~~~~~~~~~~~~-~~~~~-~~i~~~~~--~~~~~~-~~~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~i~~~ 144 (267)
++. ...+.... ..+.. ..+.-+++ ++..++ +++....+|.+..|++.. ..+.++.+.. .+.+..+
T Consensus 108 p~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egc 185 (355)
T 3amr_A 108 GKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGM 185 (355)
T ss_dssp TTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEE
T ss_pred CCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceE
Confidence 433 22221100 00011 33444555 554443 566677789998888732 1234555543 4578889
Q ss_pred EEecCCCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEE--ccCCC-EEEEEE-eCCeEEEEeCC-cc
Q 024451 145 KFFPDGNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAF--SISGR-LLFAGY-SNGDCYVWDTL-LA 217 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~g~-~dg~i~i~d~~-~~ 217 (267)
...+....|..+-+|..|..+|.+... ....+.......-...+..+++ .++++ +|++++ .+..+.+||.. ..
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 999988899999999777777754221 1111111111111224677776 45555 777776 56799999986 44
Q ss_pred cee
Q 024451 218 KVV 220 (267)
Q Consensus 218 ~~~ 220 (267)
+.+
T Consensus 266 ~~v 268 (355)
T 3amr_A 266 KYV 268 (355)
T ss_dssp CEE
T ss_pred cEE
Confidence 433
No 282
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.46 E-value=0.03 Score=45.24 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=105.7
Q ss_pred eeeCCCCCeEEEcc------------CCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEec--CCCeeEEEee-
Q 024451 3 CAFSPTGQSVACGG------------LDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVP--DEDTHLITSS- 66 (267)
Q Consensus 3 ~~~~~~g~~l~~~~------------~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~--~~~~~l~s~~- 66 (267)
++..|+|..+++.+ .+|.|.++|...+.....++..... +........-+.+.+ ++..+|+.+.
T Consensus 55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh 134 (355)
T 3sre_A 55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 134 (355)
T ss_dssp EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence 45678887766653 6899999997643211111111110 111222344555554 3333444442
Q ss_pred --CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec-----------------CCCeEEEEeCCCc
Q 024451 67 --GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS-----------------CDSTARLWDTRVA 127 (267)
Q Consensus 67 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~-----------------~d~~i~iwd~~~~ 127 (267)
.+.+|.+|+++.+.....+........-...+.+.+.+ +++++++.. ..|.|.-++..
T Consensus 135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-- 211 (355)
T 3sre_A 135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-- 211 (355)
T ss_dssp STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--
T ss_pred CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--
Confidence 25678888776432211111111111223567788875 456666543 12445555542
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEcc-CCCEEEEE
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSI-SGRLLFAG 203 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~~g 203 (267)
. .+.+...-...+.++|+|+++.+..+ +..+.|..|+++....+.. .+. . ....-.++.++ +|++.+++
T Consensus 212 -~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~----~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 212 -D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F----DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp -C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C----SSEEEEEEECTTTCCEEEEE
T ss_pred -e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-C----CCCCceEEEeCCCCcEEEEe
Confidence 1 22222223456889999999877655 4678999999864222211 111 1 23467788898 58877766
Q ss_pred E-eCCeEEEEeCC
Q 024451 204 Y-SNGDCYVWDTL 215 (267)
Q Consensus 204 ~-~dg~i~i~d~~ 215 (267)
. ..+.|..||..
T Consensus 285 ~~~g~~v~~~~P~ 297 (355)
T 3sre_A 285 HPNGMRIFFYDAE 297 (355)
T ss_dssp ESCHHHHHSCCTT
T ss_pred cCCceEEEEECCC
Confidence 4 33455555543
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.058 Score=48.42 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=113.5
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 126 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 126 (267)
..|.++...+++ .|-.|+.++-|..||..++.... +... .......|.++.... .+.+.+ |..++.+..++.+.
T Consensus 363 ~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 363 KVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRL 436 (781)
T ss_dssp SCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSS
T ss_pred cceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCC
Confidence 568888776654 35566766668888876543221 1100 011335677877764 445544 55556788888653
Q ss_pred cccceEEee---ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec-CCCCCCcEEEEEEccCCCEEEE
Q 024451 127 ASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 127 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
. ....+. .....|.++...+++...+ |+. +-+..+|..+++... +.... .......|.++..+++|.+.++
T Consensus 437 ~--~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 437 K--KFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp C--EEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred C--cEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe-cccCcccccccceeEEEEEcCCCCEEEE
Confidence 2 233332 1235688888887776544 444 568889987654322 21111 0011246889988888886665
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
. .++-|..||....+.. .+..........|.++...++|++.+.. .+|.+..|+.
T Consensus 512 t-~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~ 566 (781)
T 3v9f_A 512 T-FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSA 566 (781)
T ss_dssp E-SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCT
T ss_pred E-cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECC
Confidence 4 4344788987654332 1211111123568999999999877644 4665455553
No 284
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.43 E-value=0.028 Score=44.23 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=108.1
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CC-eEEEEeCC
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DS-TARLWDTR 125 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~-~i~iwd~~ 125 (267)
....+++.+++ .++++-..++.|..||...... ..+. .......+++.+. ++++++... ++ .|..++..
T Consensus 33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-~~~~------~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-IHAT------VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-EEEE------CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECT
T ss_pred CcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-EEEe------CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCC
Confidence 45678888865 4555655788999999876432 2221 1234677888764 456655433 22 45556654
Q ss_pred CcccceEEeec--cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-----cCCCCCCcEEEEEEccCCC
Q 024451 126 VASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-----HGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 126 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~ 198 (267)
... +..+.. .......+...+.+..+++-..++.|..+|...++........ ...........+ ++++.
T Consensus 104 ~g~--~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 104 DGT--VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp TSC--EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred CCe--EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 322 222211 1122334444455555555556788888887654211110010 000111234555 78887
Q ss_pred EEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 199 LLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 199 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.|..+. ..+.|+.||......+.....+.. ......++++++|+++++....+.|.+++..|
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 665554 568999999754111100000000 01234578899999888777778899998765
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.062 Score=45.39 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=92.7
Q ss_pred EEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEE-------eCCCCeEEEEecCCC---
Q 024451 49 VSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI-------SGSNSRMFVSGSCDS--- 117 (267)
Q Consensus 49 v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~s~~~d~--- 117 (267)
-..++|.|. ++.++++-...+.|++.|..++......... .........+++ ++....++++...++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 456888884 4444444444567888998877655443211 112335788888 865554666655442
Q ss_pred ---eEEEEeCCCcccce-----EEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCC-------CCee---------
Q 024451 118 ---TARLWDTRVASRAV-----RTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIR-------TGHQ--------- 172 (267)
Q Consensus 118 ---~i~iwd~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~-------~~~~--------- 172 (267)
.|.+.+........ ..+.. -.....++++| ++.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 25566533201111 12221 12456788999 45666677788899999987 4442
Q ss_pred --eEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeC
Q 024451 173 --LQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDT 214 (267)
Q Consensus 173 --~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~ 214 (267)
...+... . .......++|+|+++.|..+ +..+.|+.++.
T Consensus 298 g~~~~l~~~-~--~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 298 NTFKQLFTI-A--DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEEEEEC-S--SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEec-C--CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1122211 1 12345789999999965554 45678888653
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.20 E-value=0.095 Score=45.56 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=23.1
Q ss_pred cCC---CEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451 148 PDG---NRFGTGSDDGTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 148 ~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~ 176 (267)
.+| +.++.++.+|.+.++|.++++.+...
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 456 46777889999999999999876543
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.12 E-value=0.14 Score=46.04 Aligned_cols=184 Identities=9% Similarity=-0.028 Sum_probs=108.7
Q ss_pred CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---cceEEeeccccceeE
Q 024451 67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS---RAVRTFHGHEGDVNT 143 (267)
Q Consensus 67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~ 143 (267)
....|+..++.......+.. ....+..++++...++++.+-...+.|+.+++.... .....+.........
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred cccceeEeeccCCcceeeec------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 34557777776543333221 233467888887777888888888889888875321 112222223345678
Q ss_pred EEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eC-CeEEEEeCCcccee
Q 024451 144 VKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SN-GDCYVWDTLLAKVV 220 (267)
Q Consensus 144 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~d-g~i~i~d~~~~~~~ 220 (267)
+++.+.+ +++++-...+.|.+.+++.... ..+.... ......++++|.+..|+... .+ +.|...++......
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCC----CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 9998866 4555666778999999875443 3332211 22468999999866665554 23 67888886543221
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCceEe
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGGYRR 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~~~~ 265 (267)
... ...-..-..|+++|.+..|..+. ....|...++.|..|
T Consensus 551 ~lv----~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 551 SLV----TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EEE----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEE----eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 111 11223457889987666555443 355677777766443
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.11 E-value=0.15 Score=45.95 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=110.1
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++|++ ++.++++-...+.|..+++...... . .....+.........+++.+.+..++++-...+.|.+.++.....
T Consensus 429 l~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~--~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~ 505 (791)
T 3m0c_C 429 LDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 505 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred EeecccCCeeEEeeccceeEEEEeccCCCCC-c--ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE
Confidence 56665 4455556556677777776532100 0 011112212233445777766656666667778999999876544
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d 159 (267)
...+. ..-.....|++++..+.++.+-... ..|...++.. ......+.........|++++.++.|. +-...
T Consensus 506 ~~l~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 506 KTLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp EEEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEe-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 33332 1223467888988777777776443 6788888752 222222222234568899997655554 44556
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
..|...++..... ..+.... ........+++.. +.++.+-...+.|...|..++
T Consensus 580 ~~I~~~d~dG~~~-~~v~~~~--~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 580 HSISSIDVNGGNR-KTILEDE--KRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TEEEEEETTSCSC-EEEEECT--TTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CcEEEEecCCCce-EEEecCC--CccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 7899999865433 3332211 1122345666532 234444445577777775433
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.09 E-value=0.073 Score=42.27 Aligned_cols=221 Identities=5% Similarity=-0.070 Sum_probs=124.9
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCccc
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTAD 96 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~ 96 (267)
...|+..++..... . ....+. .......+.|.+.++.+..+-...+.|..++++.... ...+. ..-..
T Consensus 12 ~~~I~~i~l~~~~~-~----~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKE-N----ATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-----SGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTS-C----CEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----ECCSC
T ss_pred cCeEEEEECCCCce-E----EEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----CCCCC
Confidence 45788888865320 0 111111 2234668899986666666666778899998876521 11111 01123
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeE
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQ 174 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~ 174 (267)
...+++.+..+.++.+-...+.|.++++.. ................++++|.+..+.... ..+.|...+++... ..
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~ 158 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RF 158 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eE
Confidence 456777766777888877888999998753 222222222334568899998655544433 35778888876432 22
Q ss_pred EEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 175 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
.+... .......+++++++..|..+. ..+.|..+|....... .+.. .....-..+++.. +.++.+-...+
T Consensus 159 ~~~~~----~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~---~~~~~P~glav~~-~~lywtd~~~~ 229 (318)
T 3sov_A 159 IIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK---GSLPHPFALTLFE-DILYWTDWSTH 229 (318)
T ss_dssp EEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---SCCSCEEEEEEET-TEEEEEETTTT
T ss_pred EEEEC----CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEec---CCCCCceEEEEeC-CEEEEEecCCC
Confidence 22211 123468999999777666554 4678999987532111 1110 1112234566643 34444444566
Q ss_pred cEEEEec
Q 024451 254 NLKIWAF 260 (267)
Q Consensus 254 ~i~~w~~ 260 (267)
.|..++.
T Consensus 230 ~V~~~~~ 236 (318)
T 3sov_A 230 SILACNK 236 (318)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 6777765
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.06 E-value=0.13 Score=44.59 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
++.|.-||+.+++.+-...... . ...-.....+..++.|+.||.++.||.++++.+.++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~-----~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-P-----LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-C-----CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-C-----CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 6789999999988765443211 1 111112235678888999999999999999888665
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.04 E-value=0.015 Score=51.57 Aligned_cols=197 Identities=9% Similarity=-0.026 Sum_probs=104.2
Q ss_pred EEEEEEecCCCeeEEEeeCCCeEEEEeCCC----CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
+..++|.+.+..++++-...+.|+.+++.. ......+. ........+++.+..++++++-...+.|.+.++
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-----~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-----SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-----CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 456788876655555555667898888875 11111111 011123446666556677777777788999987
Q ss_pred CCcccceEEe-eccccceeEEEEecCCCEE-EEeeC-CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 125 RVASRAVRTF-HGHEGDVNTVKFFPDGNRF-GTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 125 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
.. . ....+ .........++++|.+..| ++-.. .+.|..+++.... ...+.. ........++|++++..|.
T Consensus 483 dg-~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~----~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 483 KG-V-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT----ENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp SS-C-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESC----SSCSSCCCEEECTTTCCEE
T ss_pred CC-C-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEe----CCCCCccEEEEeccCCEEE
Confidence 53 2 22222 2222345788999865444 43322 3678877775432 222211 1122457899998766554
Q ss_pred EE-EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 202 AG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 202 ~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+ ...+.|..+|+...... .+.... .....-..|++..+ .++.+....+.|..++.
T Consensus 556 ~aD~~~~~I~~~d~dG~~~~-~~~~~~-~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 556 WVDSKLHSISSIDVNGGNRK-TILEDE-KRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp EEETTTTEEEEECSSSSCCE-EECCCS-SSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred EEecCCCeEEEEccCCCceE-EEEecC-CcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 44 45678999987532211 111100 00011223444433 44445555677888764
No 292
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.04 E-value=0.14 Score=44.56 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred EEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEee
Q 024451 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTFH 135 (267)
Q Consensus 62 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~~ 135 (267)
|+.++.|+.|..+|..+++.+......... ....+. +..+. ++.+++..+ .++.|+.+|.++.+...+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 778889999999999999876654321100 000111 11122 344443332 478999999876544332221
Q ss_pred cccc------------------------------------ce-eEEEEecCCCEEEEeeCC----------------CcE
Q 024451 136 GHEG------------------------------------DV-NTVKFFPDGNRFGTGSDD----------------GTC 162 (267)
Q Consensus 136 ~~~~------------------------------------~i-~~~~~~~~~~~l~~~~~d----------------~~i 162 (267)
.... .+ ...++.+....+..+..+ ..|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1100 01 134566777777766554 378
Q ss_pred EEEeCCCCeeeEEEEeecCCC-----CCCcEEEEEEc-cCC---CEEEEEEeCCeEEEEeCCccceeee
Q 024451 163 RLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFS-ISG---RLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s-~~~---~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
.-+|.++++..-.+...+... ...++ -+... .+| ..++.++.+|.++++|..+++.+..
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 999999998776543322111 00111 12222 467 4677788999999999988877654
No 293
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.95 E-value=0.098 Score=41.41 Aligned_cols=220 Identities=8% Similarity=-0.012 Sum_probs=123.1
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC----CeeEEEeCCccccCCc
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT----GLRTSVFGGEFQSGHT 94 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~ 94 (267)
..|+..|+.... ....+. .-.....+.|.+.++.++++-...+.|..+++.. ......+.. .-
T Consensus 10 ~~I~~i~~~~~~-------~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-----~~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSE-------YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----DI 76 (316)
T ss_dssp SSEEEEETTSCC-------CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-----SC
T ss_pred CeEEEEECCCcc-------eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-----CC
Confidence 358888876432 111122 2234678899887666666666778999999875 222222211 11
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeCC-CcEEEEeCCCCee
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSDD-GTCRLFDIRTGHQ 172 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-~~i~iwd~~~~~~ 172 (267)
.....+++++.+++++++-...+.|.+.+... ................++++|.+..+. +.... +.|...+++. +.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 23456777765677888877888999998753 222222222234568899998655444 43333 6788888754 33
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
...+... .......+++++++..|..+. ..+.|..+|...... ..+... ......-..+++. .+.++.+-..
T Consensus 155 ~~~~~~~----~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~-~~~~~~P~giav~-~~~ly~~d~~ 227 (316)
T 1ijq_A 155 IYSLVTE----NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED-EKRLAHPFSLAVF-EDKVFWTDII 227 (316)
T ss_dssp EEEEECS----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-TTTTSSEEEEEEE-TTEEEEEETT
T ss_pred eEEEEEC----CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeec-CCccCCcEEEEEE-CCEEEEEECC
Confidence 2222211 223578999998877666554 457899999753211 111100 0011123456664 3555555555
Q ss_pred CCcEEEEec
Q 024451 252 DTNLKIWAF 260 (267)
Q Consensus 252 dg~i~~w~~ 260 (267)
.+.|..++.
T Consensus 228 ~~~V~~~~~ 236 (316)
T 1ijq_A 228 NEAIFSANR 236 (316)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEeC
Confidence 667777763
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.95 E-value=0.12 Score=42.43 Aligned_cols=219 Identities=8% Similarity=-0.032 Sum_probs=123.1
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeCCccccCCc
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGGEFQSGHT 94 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~ 94 (267)
..|+..++.... ... +......+..++|.+.++.+..+-...+.|+.+++... .....+. ...
T Consensus 92 ~~I~~i~l~~~~-------~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-----~~~ 158 (400)
T 3p5b_L 92 HEVRKMTLDRSE-------YTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----RDI 158 (400)
T ss_dssp TEEEEECTTSCS-------CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-----SSC
T ss_pred ceeEEEccCCcc-------eeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-----CCC
Confidence 467777765321 111 11233456789999876665556566788988888642 1222221 122
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCee
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQ 172 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~ 172 (267)
.....+++....++++.+-...+.|.+.++.. ......+.........++++|.+..|.... ..+.|...+++....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 34567778766778888888888999998763 222222222334468899999655544332 347888888864332
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
..+.. ........+++++++..|..+. ..+.|..+|+...... .+... ......-..+++. .+.++.+-..
T Consensus 238 -~~~~~----~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~-~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 238 -YSLVT----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILED-EKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp -EEEEC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEEC-SSTTSSEEEEEEE-TTEEEEEESS
T ss_pred -EEEEE----CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeC-CCCCCCCEEEEEe-CCEEEEecCC
Confidence 22221 1223578999998877776664 4578999987532211 11100 0011122456652 3444555555
Q ss_pred CCcEEEEe
Q 024451 252 DTNLKIWA 259 (267)
Q Consensus 252 dg~i~~w~ 259 (267)
.+.|..++
T Consensus 310 ~~~V~~~~ 317 (400)
T 3p5b_L 310 NEAIFSAN 317 (400)
T ss_dssp SCSEEEEE
T ss_pred CCeEEEEE
Confidence 66677665
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.94 E-value=0.11 Score=41.86 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=109.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC---CCeeEEEeeCC-----CeEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITSSGD-----QTCVL 73 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~d-----~~v~i 73 (267)
.++|.|+|+++++- .++.|.+++ ... ....... ............++++|+ +..+.++-..+ +.|..
T Consensus 35 ~ia~~pdG~l~V~e-~~g~I~~i~-~g~--~~~~~~~-~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 35 ALAFLPDGGMLIAE-RPGRIRLFR-EGR--LSTYAEL-SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEECTTSCEEEEE-TTTEEEEEE-TTE--EEEEEEC-CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCeEEEEe-CCCeEEEEE-CCC--ccEeecc-eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46899999977664 558898887 211 0000000 011122345677899986 44444443332 56777
Q ss_pred EeCCCCe---eEEE---eCCccccCCccceEEEEEeCCCCeEEEEecCC-------------CeEEEEeCCCc-------
Q 024451 74 WDITTGL---RTSV---FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------------STARLWDTRVA------- 127 (267)
Q Consensus 74 wd~~~~~---~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------------~~i~iwd~~~~------- 127 (267)
++..... .... ++......|. ...+.+.+ ++.++++.+.. +.|.-++....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7776431 1111 1100011232 24677776 45676664321 44544444310
Q ss_pred -----ccceEEeeccccceeEEEEec-CCCEEEEeeCCCcE------EEEeCCCCeee---------------EEEEeec
Q 024451 128 -----SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTC------RLFDIRTGHQL---------------QVYYQQH 180 (267)
Q Consensus 128 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i------~iwd~~~~~~~---------------~~~~~~~ 180 (267)
........++. ....++|+| ++.++++-.....+ .|.-+..+... .-....
T Consensus 187 ~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 187 LGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred cCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 00011111232 246788999 66666554332221 12222222100 000000
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce---eeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV---VLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
........++| .+|..+++....+.|...++..... ......+... ...+..+++.|||.++++..
T Consensus 265 --~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 --PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp --TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred --CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 00112456666 4666666666667777777653321 0001111111 24688999999998777653
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.92 E-value=0.12 Score=41.79 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=113.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecC---CCeeEEEeeC---C----C
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPD---EDTHLITSSG---D----Q 69 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~---~~~~l~s~~~---d----~ 69 (267)
.++|.|+|+++++- .++.|.+++... ..+... ...........++++|+ +..+.++-+. + .
T Consensus 33 ~ia~~pdG~l~V~e-~~g~I~~~d~~G------~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 33 SIAPLGGGRYLVTE-RPGRLVLISPSG------KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp EEEEEETTEEEEEE-TTTEEEEECSSC------EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred EEEEcCCCeEEEEe-CCCEEEEEeCCC------ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 46789999976664 458888886321 101110 11112244678899986 4444444332 3 5
Q ss_pred eEEEEeCCCC-----eeEEEeC-CccccCCccceEEEEEeCCCCeEEEEecCC-------------CeEEEEeCCCcc--
Q 024451 70 TCVLWDITTG-----LRTSVFG-GEFQSGHTADVLSVSISGSNSRMFVSGSCD-------------STARLWDTRVAS-- 128 (267)
Q Consensus 70 ~v~iwd~~~~-----~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------------~~i~iwd~~~~~-- 128 (267)
.|..|+.... .....+. ......|. ...+.+.+ ++.++++.+.. |.|.-.+.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 6777776543 1111111 00011232 34577776 45676664421 344444432110
Q ss_pred -----cceEEeeccccceeEEEEec-CCCEEEEeeC-CC--cEEEEeCCCCee---------------eEEEEeecCCCC
Q 024451 129 -----RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD-DG--TCRLFDIRTGHQ---------------LQVYYQQHGENE 184 (267)
Q Consensus 129 -----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-d~--~i~iwd~~~~~~---------------~~~~~~~~~~~~ 184 (267)
.......++.. ...++|+| ++.++++-.. ++ .|.+. ..+.. ..-.... . ..
T Consensus 183 ~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~-~~ 257 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT-G-SE 257 (354)
T ss_dssp TSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-T-TC
T ss_pred CCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec-C-CC
Confidence 00111123332 36789999 6666655332 22 23322 22110 0000000 0 01
Q ss_pred CCcEEEEEE-------ccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 185 IPHVTSIAF-------SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 185 ~~~v~~~~~-------s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
......++| ..+|.++++....+.|...++.....+.....+...-...+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 123567777 356777777767788888887643222111111112235688999999998777654
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.11 Score=43.99 Aligned_cols=156 Identities=10% Similarity=0.093 Sum_probs=89.0
Q ss_pred eEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeecc----ccceeEEEE-------ecCCCEEEEeeCCC----
Q 024451 97 VLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKF-------FPDGNRFGTGSDDG---- 160 (267)
Q Consensus 97 i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~-------~~~~~~l~~~~~d~---- 160 (267)
...++++|. .++++++......|++.|.+. . .+..+..- ......++| +++++.|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-R-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTT-T-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCC-C-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 457888873 566777666667788888763 2 23333211 124788999 99998666555433
Q ss_pred ---cEEEEeCCC-Ceee-----EEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCC-------ccce----
Q 024451 161 ---TCRLFDIRT-GHQL-----QVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTL-------LAKV---- 219 (267)
Q Consensus 161 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~-------~~~~---- 219 (267)
.|.+++... +... ..+.. . .....++++|+ +.++++-..++.|+.+|.. .++.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-Y-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-E-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred cCceEEEEecCCCCceeecccceeecc-C-----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 255665333 1111 11111 1 12356788995 5555666678899999976 2322
Q ss_pred -------eeecccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCc
Q 024451 220 -------VLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGG 262 (267)
Q Consensus 220 -------~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~ 262 (267)
...+.. ......-..++|+|+|++|..+ +....|+.+++++
T Consensus 293 ~~~~~g~~~~l~~--~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 293 VKNNPNTFKQLFT--IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGGCTTTEEEEEE--CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccccceeEe--cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 001111 1112334689999999954443 4566777766543
No 298
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.28 Score=44.02 Aligned_cols=202 Identities=11% Similarity=0.023 Sum_probs=113.0
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc----cccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i 121 (267)
...|.++...+++ .|-.|+.++-|..++..+.......... ...-....|.++.... ++.+. .|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLW-IGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEE-EEEBSSCEEE
T ss_pred CCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEE-EEeCCCcEEE
Confidence 4568888777654 3556776777888887755322211000 0011234577877764 34444 4454556788
Q ss_pred EeCCCcccceEEe----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 122 WDTRVASRAVRTF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 122 wd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
++.... ....+ ......|.++...+++.+.+ |+.++-+..+|.++++.. .+.. . ......|.++..++++
T Consensus 388 ~~~~~~--~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~-~-~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 388 FENGKR--VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIEL-E-KNELLDVRVFYEDKNK 461 (781)
T ss_dssp EETTEE--EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCS-T-TTCCCCEEEEEECTTS
T ss_pred EECCCC--eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-Eecc-C-CCCCCeEEEEEECCCC
Confidence 886521 12211 11235688888877776554 666677888998765422 1111 0 1123468888888877
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccc-cCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+.++. . +.|..||....+...-.... .......|.++...++|++.+....+| +..|+.
T Consensus 462 ~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 462 KIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp EEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred CEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 755544 4 56889997654432111000 011135789999999998776433244 444553
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.45 E-value=0.41 Score=41.83 Aligned_cols=186 Identities=13% Similarity=0.022 Sum_probs=103.1
Q ss_pred CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451 67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 146 (267)
Q Consensus 67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 146 (267)
..+.|+.-++.......... ...-.....+++++.++.++.+-...+.|..+++.........+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~----~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIV----VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC-------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEEEE----EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567777776432111111 11223467888888778888887778888888875321112223222245788999
Q ss_pred ecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe--CCeEEEEeCCccceeeec
Q 024451 147 FPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS--NGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 147 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~ 223 (267)
.+.++ .+++-...+.|.+.+++.... ..+.... ......++++|.+..|..... .+.|...++...... .+
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~----l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l 165 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQE----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-II 165 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS----CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCC----CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EE
Confidence 98544 555666788999999875433 2232211 123578899987666655442 356666665422111 11
Q ss_pred ccccCCccceEEEEEECCCCCeEEEe-ECCCcEEEEecCceEe
Q 024451 224 GSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGGYRR 265 (267)
Q Consensus 224 ~~~~~~~~~~v~~~~~~p~~~~l~sg-s~dg~i~~w~~~~~~~ 265 (267)
. ...-..-..|+++|+++.|..+ +..+.|...++.|..|
T Consensus 166 ~---~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 166 I---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp E---CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred E---eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence 0 0112235789999865555443 4466788888777554
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.15 E-value=0.32 Score=39.09 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=60.3
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-cCCCCCCcEEEEEEccC---CCEEEEEEeC------CeE
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSIS---GRLLFAGYSN------GDC 209 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~---~~~l~~g~~d------g~i 209 (267)
.-..++|.|+|+++++ ..++.|.+++ +++. ..+... ...........++|+|+ +..|.+.... +.|
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3578999999986665 4568999998 3432 222111 11112235789999998 5555555442 567
Q ss_pred EEEeCCcc-----ceeee-ccc-ccCCccceEEEEEECCCCCeEEEe
Q 024451 210 YVWDTLLA-----KVVLN-LGS-LQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 210 ~i~d~~~~-----~~~~~-~~~-~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
..|+.... +.+.. +.. ....|.. ..++|.|+|.+.++-
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~--~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSG--GRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCC--CCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCC--ceEEECCCCCEEEEE
Confidence 77776532 11111 110 0112433 579999999877664
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.11 E-value=0.94 Score=42.66 Aligned_cols=237 Identities=12% Similarity=0.149 Sum_probs=114.3
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCC-CcccccccCCeeeEEEEEEecC---CCeeEEEee---CCCeEEEEeCCCCee
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGN-LPVSRMLSGHKGYVSCCQYVPD---EDTHLITSS---GDQTCVLWDITTGLR 81 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~---~d~~v~iwd~~~~~~ 81 (267)
+.+|..|+.-|.=.+|.+......+.. ......+ ..-++|..+..... +...|++++ .+|++++..-.-+..
T Consensus 337 ~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 337 NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred CCEEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence 346778888777777776543221111 1122222 23467777766432 223455443 367888775432221
Q ss_pred EE-EeCCccccCCccceEEEEEeC--CCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEec-CCCEEEE
Q 024451 82 TS-VFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-DGNRFGT 155 (267)
Q Consensus 82 ~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~ 155 (267)
.. .+ + ......++++.... ....+++.+-.+.+ .|+.+.. . .+.... +-......+.... .++.++
T Consensus 416 ~~~~~--~--l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e-~veev~~~gf~~~~~TL~~~~l~~~~iv- 487 (1158)
T 3ei3_A 416 EHASI--D--LPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-E-EVEETELMGFVDDQQTFFCGNVAHQQLI- 487 (1158)
T ss_dssp EEEEE--C--CCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-T-EEEEECCTTCCSSSCEEEEEEETTTEEE-
T ss_pred EEEee--c--CCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-C-cccccccccccCCCCcEEEEEcCCCeEE-
Confidence 11 11 1 11234555554321 12345555444444 4554321 1 121111 1111111222111 122232
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
--....|++.+......+..+.. . ....|...+.. +..++.+. ++.+..+.+..... ..... ......|.
T Consensus 488 QVt~~~Irli~~~~~~~~~~w~~---p-~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L-~~~~~--~~l~~evs 557 (1158)
T 3ei3_A 488 QITSASVRLVSQEPKALVSEWKE---P-QAKNISVASCN--SSQVVVAV-GRALYYLQIHPQEL-RQISH--TEMEHEVA 557 (1158)
T ss_dssp EEESSCEEEEESSSCCEEEEECC---T-TCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE-EEEEE--EECSSCEE
T ss_pred EEecCEEEEEECCCCeEEEEEEC---C-CCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce-eeecc--cCCCCceE
Confidence 22344678887654434333321 1 11235555433 34566664 67888876643321 11111 12345799
Q ss_pred EEEECCC------CCeEEEeEC-CCcEEEEecCceE
Q 024451 236 CLGLSAD------GSALCTGSW-DTNLKIWAFGGYR 264 (267)
Q Consensus 236 ~~~~~p~------~~~l~sgs~-dg~i~~w~~~~~~ 264 (267)
|+++.|. ++++|.|.+ |++++|+++..+.
T Consensus 558 cl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 558 CLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp EEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 9999864 479999997 9999999987654
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.11 E-value=0.25 Score=39.83 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=59.4
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEee-cCCCCCCcEEEEEEccC---CCEEEEEEe----C----C
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ-HGENEIPHVTSIAFSIS---GRLLFAGYS----N----G 207 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~---~~~l~~g~~----d----g 207 (267)
.-..++|.|+|+++++ ..++.|+++|. +++ ..+... ...........++++|+ +..|.+... + .
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 4578999999986655 55689999973 444 222211 11111235789999997 555555443 2 5
Q ss_pred eEEEEeCCcc-------ceeee-cccccCCccceEEEEEECCCCCeEEEe
Q 024451 208 DCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 208 ~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
.|..|+.... +.+.. +. ....|. -..++|.|||.+.++-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~--~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHN--GGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE-CCSSCC--CCCEEECTTSCEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC-CCCCcC--CceEEECCCCcEEEEE
Confidence 6777775432 11111 11 012243 2568999999877764
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.98 E-value=0.44 Score=37.78 Aligned_cols=231 Identities=11% Similarity=0.051 Sum_probs=111.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|.+++..++ ++.++.| |...... ..- .+...........+.++.|.+ + ..+ .++.++.|..- .+.++.
T Consensus 40 ~v~~~~~~~~~~-~G~~g~i--~~s~DgG-~tW-~~~~~~~~~~~~~~~~i~~~~-~-~~~-~~g~~g~i~~S-~DgG~t 110 (327)
T 2xbg_A 40 DMSFIDRHHGWL-VGVNATL--METRDGG-QTW-EPRTLVLDHSDYRFNSVSFQG-N-EGW-IVGEPPIMLHT-TDGGQS 110 (327)
T ss_dssp EEEESSSSCEEE-EETTTEE--EEESSTT-SSC-EECCCCCSCCCCEEEEEEEET-T-EEE-EEEETTEEEEE-SSTTSS
T ss_pred EEEECCCCcEEE-EcCCCeE--EEeCCCC-CCC-eECCCCCCCCCccEEEEEecC-C-eEE-EEECCCeEEEE-CCCCCC
Confidence 456766677677 4566754 3222111 000 011111112345688888876 2 333 34556655331 122211
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE-EEEeCCCcccceEEe-eccccceeEEEEecCCCEEEEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA-RLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i-~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
=...... ..+...+..+.+.+ .++.++.+. ++.| +-.| ........ .++...+..+.+.|++.+++.+...
T Consensus 111 W~~~~~~--~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~S~D---gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 111 WSQIPLD--PKLPGSPRLIKALG-NGSAEMITN-VGAIYRTKD---SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp CEECCCC--TTCSSCEEEEEEEE-TTEEEEEET-TCCEEEESS---TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred ceECccc--cCCCCCeEEEEEEC-CCCEEEEeC-CccEEEEcC---CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence 0111000 01223355666654 345555554 4543 3333 22222222 2345568899999988877766544
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+..+-+|-. +..-.... ......+..+.+++++..++++ .+|.+++.+...++.-.............+..+++
T Consensus 184 ~~~~S~d~g-G~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 184 SFYSTWEPG-QTAWEPHN----RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp SEEEEECTT-CSSCEEEE----CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred cEEEEeCCC-CCceeECC----CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 444444421 11111111 1122357888899988766554 67887776422122111111000012335888999
Q ss_pred CCCCCeEEEeECCCcE
Q 024451 240 SADGSALCTGSWDTNL 255 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i 255 (267)
.|++++++.+. +|.+
T Consensus 258 ~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGAL 272 (327)
T ss_dssp SSSSCEEEEES-TTCE
T ss_pred cCCCEEEEEeC-CCeE
Confidence 98888877654 6655
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.93 E-value=0.78 Score=40.13 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=112.1
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|++. +.++.+-..++.|..+++.... ....+.........+++.+.++.+.++-...+.|.+.+++...
T Consensus 41 ~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 41 ALDFDVTDNRIYWTDISLKTISRAFMNGSA-------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred EEEEECCCCEEEEEECCCCeEEEEECCCCC-------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 4677764 4555565667888888765321 1111111112344566666555555666667889988887554
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE-EeeC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG-TGSD 158 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~ 158 (267)
....+.. .-.....++++|..+.++.+- +..+.|...++.. . ....+.........++++++++.|. +-..
T Consensus 114 ~~~l~~~-----~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 114 RQVLVWK-----DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-S-ERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp CEEEECS-----SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C-SCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEEeC-----CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-C-ceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 3333211 223457888998777777775 3356777777652 2 2222322344568899999765554 4456
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.+.|...|++.... ..+.. . ......+++.. +..+.+-...+.|...|..++
T Consensus 187 ~~~I~~~d~dG~~~-~v~~~-~----l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIAD-D----LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp TTEEEEEETTSCSC-EEEEE-C----CSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEcCCCCce-EEeec-c----CCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 78899999875443 33322 1 12345666654 344444445678888885443
No 305
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.87 E-value=0.37 Score=35.99 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=62.6
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee-----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
..+..++|+|+|.+.+. .+|.+.-.+..+.+. .........- . .-.++.|+++|.+.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw--~-~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGW--N-QFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCG--G-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccc--c-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence 35779999999887666 666655555433110 0000110000 0 1367889999998888 679998887
Q ss_pred CCccceeeecccccC---CccceEEEEEECCCCCeEEEeECCCcE
Q 024451 214 TLLAKVVLNLGSLQN---SHEGRITCLGLSADGSALCTGSWDTNL 255 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~sgs~dg~i 255 (267)
..+...-.-...-.. ..=..+..|.|.|+|.+.+.. |+.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 533211100000000 011457999999999988876 6764
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.67 E-value=0.62 Score=37.08 Aligned_cols=233 Identities=10% Similarity=0.196 Sum_probs=126.1
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC--eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Ce
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GL 80 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~ 80 (267)
-.+|..+.||.-. ..++.++|++... .++.| ...|..=+|.... .|+-.+ +..|.-|+++. ..
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~----------klks~~~~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~~s~ 138 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKS----------KMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ 138 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTE----------EEEEEECSSCEEEEEECSSS--EEEEEE-SSEEEEEESSTTCC
T ss_pred eeCCCccEEEEec-CCeEEEechHHhh----------hhcceecCCccEEEEecCCC--eEEEEc-CCcEEEEcccCCCC
Confidence 3578888777765 6789999987521 12222 1245455665543 333332 34788999863 23
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEec------CCCeEEEEeCCCcccceEEeeccccceeEEEEecC---CC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS------CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GN 151 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 151 (267)
+..++...... ....|.....++...=++++|- ..|.+.+|+.+ ++....+.+|......+.+..+ .+
T Consensus 139 P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 139 PVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp CEEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred Cceeeecchhc-ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec--ccccceeeeeeeeeEEEecCCCCCCce
Confidence 44444321111 1345666656543322222221 34778899876 3455667788655433333211 12
Q ss_pred EEEEeeC---CCcEEEEeCCCC---e------eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 152 RFGTGSD---DGTCRLFDIRTG---H------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 152 ~l~~~~~---d~~i~iwd~~~~---~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
.|.-+.+ .++++|-++... . ....++... .......++..|+.-..+..-+.-|.+++||++++..
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe--a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE--AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT--CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc--ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 3333322 258899888432 1 111122111 1123456777888888898888999999999999887
Q ss_pred eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+..- .--.+.|...+-+.+..-++.-...|.|.--.
T Consensus 294 i~~n----rIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 294 IYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp EEEE----ECCSSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred EEEe----ccCCCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 6532 12334555444443333344444666655443
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.36 E-value=1 Score=37.44 Aligned_cols=231 Identities=11% Similarity=0.201 Sum_probs=127.5
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe--eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Cee
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLR 81 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~ 81 (267)
.+|..+.|+.-. ..++.++|++... .++.|. ..|..=.|.... .|+-. .+..|.-|+++. ..+
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~----------klks~~~~e~VvfWkWis~~--~l~lV-T~taVyHWsi~~~s~P 138 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKS----------KMKAHTMTDDVTFWKWISLN--TVALV-TDNAVYHWSMEGESQP 138 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTE----------EEEEEECSSCCCEEEEEETT--EEEEE-CSSEEEEEESSSSCCC
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhh----------hhcceecCCCceEEEecCCC--eEEEE-cCCeeEEecccCCCCc
Confidence 577777777664 6788888886421 122221 234444565433 23333 245799999963 234
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEE-Ee------cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC---CC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SG------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GN 151 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 151 (267)
..++...... ....|.....++. .+.++ +| ...|.+.+|+.+ ++....+.||......+.+..+ .+
T Consensus 139 ~kvFdR~~~L-~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 139 VKMFDRHSSL-AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp EEEEECCGGG-TTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred hhheecchhc-ccceEEEEEECCC-CCeEEEEeecccCCcccceEEEeecc--ccccchheeeeeeeEEEecCCCCCCce
Confidence 4444321111 1345666666643 33333 22 135778899876 3456677888765544443211 12
Q ss_pred EEEEeeC---CCcEEEEeCCCC--------e-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 152 RFGTGSD---DGTCRLFDIRTG--------H-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 152 ~l~~~~~---d~~i~iwd~~~~--------~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
.|.-+.+ .++++|-++... + ....++.. +.......++..++....+..-+.-|.+++||++++..
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp--e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT--TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc--ccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 3333333 278999988542 1 11111111 11123456778888888898889999999999999887
Q ss_pred eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+..- .--.+.|...+-+....-++.-...|.|.--.
T Consensus 293 i~~n----rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 293 IYMN----RISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp EEEE----ECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred eeee----cccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence 6533 12334555555544444444445666655443
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.21 E-value=0.8 Score=35.50 Aligned_cols=184 Identities=13% Similarity=0.160 Sum_probs=88.4
Q ss_pred CeeEEEeeCC-----CeEEEEeCCCCe---eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCC
Q 024451 59 DTHLITSSGD-----QTCVLWDITTGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTR 125 (267)
Q Consensus 59 ~~~l~s~~~d-----~~v~iwd~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~ 125 (267)
+.+++.|+.+ ..+.+||..+.. -...-. .... ..-.++... ++++++.|+.++ .+.++|+.
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP--MNVR--RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC--CSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC--CCCC--ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence 3566666654 458899988765 332211 1111 111122222 457778777543 57788875
Q ss_pred CcccceEEeecc-ccc-eeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451 126 VASRAVRTFHGH-EGD-VNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 126 ~~~~~~~~~~~~-~~~-i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 198 (267)
... ...+... ... -.++.. -+++.++.|+.+ ..+.+||+.+.+-... ... .........+. .++.
T Consensus 137 ~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~ 208 (301)
T 2vpj_A 137 IDQ--WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPM-ATKRSGAGVAL--LNDH 208 (301)
T ss_dssp TTE--EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCC-SSCCBSCEEEE--ETTE
T ss_pred CCe--EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCC-CcccccceEEE--ECCE
Confidence 322 2222111 111 122222 266777777754 4588899887643221 111 11111112222 2566
Q ss_pred EEEEEEeC-----CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEec
Q 024451 199 LLFAGYSN-----GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAF 260 (267)
Q Consensus 199 ~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~ 260 (267)
+++.|+.+ ..+.+||..+.+-.. ...++..... ..++.+ ++++++.|+.++ .+.+|++
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMTTPRCY-VGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBS-CEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCCCcccc-eeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 77777653 468899986543211 1111111111 112222 677778887663 3555554
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.21 E-value=1.1 Score=37.03 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.2
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee----------eEEEEeecC--C-CCCCcEEEEEEccC---CCEEEEE
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ----------LQVYYQQHG--E-NEIPHVTSIAFSIS---GRLLFAG 203 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~--~-~~~~~v~~~~~s~~---~~~l~~g 203 (267)
.+..+..+|+|+++|..+ +..|.|-.+-.+.. ++......+ . ....+|..+.|+|- +..|++=
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 578899999999998876 45888888763221 111111111 0 12356999999985 5689999
Q ss_pred EeCCeEEEEeCCccc-eeeecccc-----cCCccceEEEEEECCCCCeEEEeE--CCCcEE
Q 024451 204 YSNGDCYVWDTLLAK-VVLNLGSL-----QNSHEGRITCLGLSADGSALCTGS--WDTNLK 256 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~-~~~~~~~~-----~~~~~~~v~~~~~~p~~~~l~sgs--~dg~i~ 256 (267)
.+|+.|++||+.... .+..+... .......|.+++|.+++-.|...+ .+|.|.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 999999999987521 11111000 012236789999999877666544 666654
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.12 E-value=1.2 Score=37.14 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=61.0
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC----CCCCCcEEEEEEccC---CCEEEEEEe-------
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG----ENEIPHVTSIAFSIS---GRLLFAGYS------- 205 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~---~~~l~~g~~------- 205 (267)
....++|.|+|+++++-...+.|.+++..+++... +..... .........++|+|+ +..|.....
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45789999999987775544578888765444322 211110 012345789999996 555555543
Q ss_pred ------CCeEEEEeCCcc-------ceeee-cccccCCccceEEEEEECCCCCeEEEeE
Q 024451 206 ------NGDCYVWDTLLA-------KVVLN-LGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 206 ------dg~i~i~d~~~~-------~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
...|.-|+.... +.+.. +.. ...|. ...|+|.|||++.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~--~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQ--SGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCC--EEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCC--CCeEeECCCCeEEEEEC
Confidence 234555553211 11211 111 12353 58899999998777644
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.97 E-value=1.3 Score=36.60 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-----------
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----------- 129 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~----------- 129 (267)
.++.+ .++.||.=++..+..-+.+..... -.-..+..+..+++ +.+++..+ +..|.|-.+.....
T Consensus 34 ~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~-i~f~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 34 RIVFI-QDNIIRWYNVLTDSLYHSLNFSRH-LVLDDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp EEEEE-ETTEEEEEETTTCSSCEEEECTTT-CCCCTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred EEEEE-ECCEEEEEECCCCCcceEEecCcc-cccCceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence 34433 347788777763322222211100 01124566777764 55555544 44788887652210
Q ss_pred ceEEeec------cccceeEEEEecC---CCEEEEeeCCCcEEEEeCCCCeee-EEEEeec----CCCCCCcEEEEEEcc
Q 024451 130 AVRTFHG------HEGDVNTVKFFPD---GNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQH----GENEIPHVTSIAFSI 195 (267)
Q Consensus 130 ~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~ 195 (267)
..+.+.- ...+|..+.|||- +..+++-..|+.||+||+...... ..+.+.. .......+.+++|.+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1122221 2457999999995 468999999999999999753211 1111110 011124689999999
Q ss_pred CCCEEEEEE--eCCeEEEE
Q 024451 196 SGRLLFAGY--SNGDCYVW 212 (267)
Q Consensus 196 ~~~~l~~g~--~dg~i~i~ 212 (267)
++-.|.+.+ .+|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 887666655 77888764
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.94 E-value=0.98 Score=35.05 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=88.8
Q ss_pred CCCeEEEccCCC-----eEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC-----eEEEEeC
Q 024451 8 TGQSVACGGLDS-----VCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-----TCVLWDI 76 (267)
Q Consensus 8 ~g~~l~~~~~d~-----~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~v~iwd~ 76 (267)
++.+++.||.++ .+.+||.....=. ...++.. ...|. ++.+ ++..++.|+.++ .+.+||.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLG----AAVL---NGLLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCE----EEEE---TTEEEEEEEECSSCEEEEEEEEET
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceE----EEEE---CCEEEEEcCCCCCccCceEEEEeC
Confidence 667788888653 4667776532100 0011111 11232 2222 234566666543 4778888
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-------CeEEEEeCCCcccceEEeecccc--ceeEEEEe
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STARLWDTRVASRAVRTFHGHEG--DVNTVKFF 147 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~ 147 (267)
.+..-...-... ....-.++... ++++++.|+.+ ..+.+||+... ....+..... .-.++..
T Consensus 132 ~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~- 202 (302)
T 2xn4_A 132 KSNEWFHVAPMN----TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGV- 202 (302)
T ss_dssp TTTEEEEECCCS----SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-
T ss_pred CCCeEeecCCCC----CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEE-
Confidence 876543322111 11111222222 45677777643 34778887632 2222211111 1122222
Q ss_pred cCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----eEEEEeCCcc
Q 024451 148 PDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLA 217 (267)
Q Consensus 148 ~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~ 217 (267)
-+++.++.|+.+ ..+.+||+.+.+-... ...... ......+ ..++.+++.|+.++ .+.+||..+.
T Consensus 203 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 203 LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV--ADMNMC-RRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE--CCCSSC-CBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ECCEEEEECCCCCCcccceEEEEeCCCCCEeeC--CCCCCc-cccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 256777777764 3688999987643221 111111 1111222 23666777776543 5888887654
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.84 E-value=1.2 Score=35.69 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=62.4
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe-ecCCCCCCcEEEEEEccC---CCEEEEEE---eCCeEEE
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSIS---GRLLFAGY---SNGDCYV 211 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~---~~~l~~g~---~dg~i~i 211 (267)
..-..++|.|+|.++++--..|.|++++...++....... ............++++|+ +..|.... .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3457899999999887766589999998765543221110 011112345789999995 45555443 2345555
Q ss_pred EeCCc----------cceee-ecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 212 WDTLL----------AKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 212 ~d~~~----------~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
|.... .+.+. .+.. ...|.. ..|+|.|||.+.++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g--~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNG--GRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCC--CCEEECTTSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC-CCCccC--ccccCCCCCCEEEEEC
Confidence 55432 11111 1111 123543 5689999998777643
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.73 E-value=2 Score=37.58 Aligned_cols=219 Identities=7% Similarity=-0.067 Sum_probs=125.9
Q ss_pred CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451 17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 96 (267)
Q Consensus 17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 96 (267)
....|+..++..... .....+.+ -.....++|.+.++..+.+-..++.|+.++++.......+.. ....
T Consensus 13 ~~~~I~~i~l~~~~~-----~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-----g~~~ 81 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----NVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-----GLDY 81 (628)
T ss_dssp ETTEEEEEESSCTTC-----EEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SCSC
T ss_pred eCCcEEEEECCCCCc-----ceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-----CCCC
Confidence 345788888864221 01111112 234678999987766666666788999998875433333321 1123
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE-EEe-eCCCcEEEEeCCCCeeeE
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTG-SDDGTCRLFDIRTGHQLQ 174 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~~d~~i~iwd~~~~~~~~ 174 (267)
...++++..+++++.+-...+.|.+.++.. ..........-.....++++|....| .+- +....|...+++... ..
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~ 159 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDG-QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RT 159 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS-TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCC-CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eE
Confidence 556777766778888888888999998753 22112222233456899999854444 443 235678878876443 33
Q ss_pred EEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 175 VYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
.+.. .......+++++++..|..+. ..+.|..+|+...... .+. ... ..-..+++.. +.+..+-...+
T Consensus 160 ~l~~-----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~---~~l-~~P~glav~~-~~ly~tD~~~~ 228 (628)
T 4a0p_A 160 TLVP-----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIA---DDL-PHPFGLTQYQ-DYIYWTDWSRR 228 (628)
T ss_dssp EEEC-----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE---ECC-SCEEEEEEET-TEEEEEETTTT
T ss_pred EEEC-----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Eee---ccC-CCceEEEEEC-CEEEEecCCCC
Confidence 3322 223578999999877776665 4578888887543221 111 111 1224566654 34444433456
Q ss_pred cEEEEe
Q 024451 254 NLKIWA 259 (267)
Q Consensus 254 ~i~~w~ 259 (267)
.|...+
T Consensus 229 ~I~~~d 234 (628)
T 4a0p_A 229 SIERAN 234 (628)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666665
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.55 E-value=1.2 Score=34.46 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=88.1
Q ss_pred CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451 59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS 128 (267)
Q Consensus 59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~ 128 (267)
+..++.|+.+ ..+.+||..+..-...-... ....-.++... ++++++.|+.++ .+.+||+...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~- 134 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN- 134 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence 3566666654 35888998876533322111 11111222222 457777777553 4667776532
Q ss_pred cceEEeecccc--ceeEEEEecCCCEEEEeeCC-------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 129 RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDD-------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 129 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
....+..... .-.++.. -+++.++.|+.+ ..+.+||+.+.+-... ..... .......+. .++.+
T Consensus 135 -~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~-~r~~~~~~~--~~~~i 207 (302)
T 2xn4_A 135 -EWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMST-RRSGAGVGV--LNNLL 207 (302)
T ss_dssp -EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE--CCCSS-CCBSCEEEE--ETTEE
T ss_pred -eEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC--CCCcc-ccccccEEE--ECCEE
Confidence 2222211111 1122222 256677777643 3588899887643221 11111 111112222 25677
Q ss_pred EEEEEeC-----CeEEEEeCCccc--eeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEecC
Q 024451 200 LFAGYSN-----GDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAFG 261 (267)
Q Consensus 200 l~~g~~d-----g~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~~ 261 (267)
++.|+.+ ..+.+||..+.+ .+..+......| ..+. .++++++.|+.++ .+.+|++.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~----~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA----GVCA--VNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC----EEEE--ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC----eEEE--ECCEEEEECCcCCCcccccEEEEcCC
Confidence 7777654 368899976543 222111111111 1122 2677888887664 36677653
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.34 E-value=3.9 Score=39.34 Aligned_cols=197 Identities=12% Similarity=0.264 Sum_probs=101.5
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe--eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-ee
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK--GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LR 81 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~ 81 (267)
.+|..+.|+.-. ..++.|+|++... .++.|. ..|..=.|..... |+-. .+..|.-|++... .+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~----------klks~~~~e~VvfWkWis~~~--l~lV-T~~aVyHW~~~~~s~P 138 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKS----------KMKAHTMTDDVTFWKWISLNT--VALV-TDNAVYHWSMEGESQP 138 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhh----------hhcccccCCCceEEEecCCCe--eEEE-cCCeEEEeccCCCCcc
Confidence 466666666654 5677777775421 112221 2344445654332 3322 2347888998532 22
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEE-Ee------cCCCeEEEEeCCCcccceEEeeccccceeEEEEe--cC-CC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFV-SG------SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PD-GN 151 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-s~------~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~ 151 (267)
..+|...... ....|..-..++. .+.++ +| ...|.+.+|+++ ++....+.||.+....+... +. .+
T Consensus 139 ~k~fdR~~~L-~~~QIinY~~d~~-~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~iegha~~F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 139 VKMFDRHSSL-AGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQFKMEGNAEEST 214 (1630)
T ss_pred HHHHhcchhc-ccCeeEEeeeCCC-CCeEEEEeeccCCCcccceeeeeecc--cccchhhhHhHhhhheeccCCCCCCce
Confidence 2232211000 1234555555543 23332 22 346888999875 33455567776655444432 11 22
Q ss_pred EEEEeeC---CCcEEEEeCCCC---e------eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 152 RFGTGSD---DGTCRLFDIRTG---H------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 152 ~l~~~~~---d~~i~iwd~~~~---~------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
.|.-+.. .++++|-++... . ....++.... ......++..++....+..-+.-|.+++||+.++..
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~--~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA--QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc--ccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 3332222 268888887542 1 1111111110 112345666778888888888999999999998876
Q ss_pred ee
Q 024451 220 VL 221 (267)
Q Consensus 220 ~~ 221 (267)
+.
T Consensus 293 i~ 294 (1630)
T 1xi4_A 293 IY 294 (1630)
T ss_pred hh
Confidence 54
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.18 E-value=1.5 Score=34.00 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred CCCCeEEEccCC----CeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC------CeEEEEe
Q 024451 7 PTGQSVACGGLD----SVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWD 75 (267)
Q Consensus 7 ~~g~~l~~~~~d----~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~v~iwd 75 (267)
.++.+++.||.+ ..+.+||.....=. ...+|.. ..+|. ++.+ ++.+++.|+.+ ..+.+||
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~iyv~GG~~~~~~~~~~~~~~d 124 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLA----ACAA---EGKIYTSGGSEVGNSALYLFECYD 124 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--CBSCE----EEEE---TTEEEEECCBBTTBSCCCCEEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--cccee----EEEE---CCEEEEECCCCCCCcEeeeEEEEe
Confidence 366778888865 56777876542100 0001111 11222 2222 33566666654 4588899
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeecccc-c-eeEE
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEG-D-VNTV 144 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~-~-i~~~ 144 (267)
..+..-...-. ..... .-.+.... ++++++.|+. -..+.+||+... ....+..... . -.++
T Consensus 125 ~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~ 196 (306)
T 3ii7_A 125 TRTESWHTKPS--MLTQR--CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGL 196 (306)
T ss_dssp TTTTEEEEECC--CSSCC--BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEE
T ss_pred CCCCceEeCCC--CcCCc--ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceE
Confidence 98775433211 11111 11122222 4567777764 244778887643 2232321111 1 1222
Q ss_pred EEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeC
Q 024451 145 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT 214 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~ 214 (267)
... +++.++.|+.+ ..+.+||+.+.+-... .. ..........+.+ ++.+++.|+.+ ..+.+||.
T Consensus 197 ~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~--~~-~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 197 VFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV--SP-MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp EEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC--CC-CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred EEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC--CC-CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 222 56677777654 3588899887542211 11 1111111222222 66777777643 47888987
Q ss_pred Ccc
Q 024451 215 LLA 217 (267)
Q Consensus 215 ~~~ 217 (267)
.+.
T Consensus 271 ~~~ 273 (306)
T 3ii7_A 271 ETD 273 (306)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.67 E-value=1.9 Score=33.40 Aligned_cols=226 Identities=13% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCeEEEccCC--CeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC----CeEEEEeCCCCee
Q 024451 9 GQSVACGGLD--SVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD----QTCVLWDITTGLR 81 (267)
Q Consensus 9 g~~l~~~~~d--~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~ 81 (267)
+.+++.||.+ ..+.+||.....= .-..+|.. -.+|. ++.+ ++.+++.|+.+ ..+.+||..+..-
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~----~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAA----CVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC--CBSCE----EEEE---TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc--cceeE----EEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 4566667653 5677787654210 00111111 11222 2222 33566667654 6688899987754
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceEEeeccc-cc-eeEEEEecCCCEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGHE-GD-VNTVKFFPDGNRF 153 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l 153 (267)
...-... .. ..-.+.... ++++++.|+.+ ..+.+||..... ...+.... .. -.++.. -+++.+
T Consensus 83 ~~~~~~p--~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iy 153 (306)
T 3ii7_A 83 YSKLGPP--TP--RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVE-ANGLIY 153 (306)
T ss_dssp EEEECCS--SC--CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred EECCCCC--cc--ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEE-ECCEEE
Confidence 3332111 11 111122222 45778888765 457788876422 22221111 11 122222 256666
Q ss_pred EEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeCCccce
Q 024451 154 GTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLAKV 219 (267)
Q Consensus 154 ~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~~~ 219 (267)
+.|+. -..+.+||+.+.+-... ..... ....-..+. -++.+++.|+.+ ..+.+||..+.+=
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATETWTEL--CPMIE-ARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTEEEEE--CCCSS-CCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCeEEEC--CCccc-hhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 77663 34588999887643221 11111 111112222 256677776543 4688899765431
Q ss_pred eeecccccCCccceEEEEEECCCCCeEEEeECC-----CcEEEEecC
Q 024451 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAFG 261 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----g~i~~w~~~ 261 (267)
. ....++.... ...++.+ ++++++.|+.+ ..+.+|+..
T Consensus 229 ~-~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 229 K-MVSPMPWKGV-TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp E-ECCCCSCCBS-CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred E-ECCCCCCCcc-ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 1 1111111111 1122222 67788888865 346666653
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.44 E-value=3.6 Score=35.85 Aligned_cols=181 Identities=6% Similarity=-0.026 Sum_probs=103.1
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCccc
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTAD 96 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~ 96 (267)
...|++-++..... ...... ..-.....++|.+.++..+.+=...+.|..++++.... ..++.. ....
T Consensus 17 ~~~I~~i~~~~~~~-----~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-----~~~~ 85 (619)
T 3s94_A 17 RRDLRLVDATNGKE-----NATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-----GLLS 85 (619)
T ss_dssp SSBEEEECCC--------------C-BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-----SCSC
T ss_pred cccEEEEeCCCCcc-----eEEEEE-cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-----CCCC
Confidence 35688887764210 011111 12234568899987665555555567888888865421 222211 1234
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEE-EEe-eCCCcEEEEeCCCCeee
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRF-GTG-SDDGTCRLFDIRTGHQL 173 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l-~~~-~~d~~i~iwd~~~~~~~ 173 (267)
...++++..+++++.+-...+.|.+.++.. . ..+.+. ........++++|.+..| .+- +....|...+++... .
T Consensus 86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~ 162 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSETNRIEVSNLDG-S-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R 162 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS-C-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred cCeEEEEecCCEEEEEeCCCCEEEEEECCC-C-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-e
Confidence 677888876778888888889999999763 2 222222 233446789999975544 443 234567777765432 2
Q ss_pred EEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCc
Q 024451 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLL 216 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~ 216 (267)
..+... .......+++++++..|..+. ..+.|..+|...
T Consensus 163 ~~l~~~----~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 163 FIIINS----EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp EEEECS----SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred EEEEeC----CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 222221 223578999998776666554 456888888654
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.41 E-value=2.1 Score=33.05 Aligned_cols=192 Identities=13% Similarity=0.172 Sum_probs=90.5
Q ss_pred CCCCeEEEccCC-----CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-----CeEEEEeC
Q 024451 7 PTGQSVACGGLD-----SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-----QTCVLWDI 76 (267)
Q Consensus 7 ~~g~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~v~iwd~ 76 (267)
.++.+++.||.+ ..+.+||...... ........+......-.++.. ++..++.|+.+ ..+.+||.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~--~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADED--GVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTT--CCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEET
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCC--CeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcC
Confidence 357778888865 4577888654320 001111111111111112222 23456666543 35888998
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcccceEEeeccc-cc-eeEEEEecC
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHE-GD-VNTVKFFPD 149 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~~~~~~ 149 (267)
.+..-...-... .. ..-.+.... ++++++.|+.+ ..+.+||+... ....+.... .. -.++.. -+
T Consensus 136 ~~~~W~~~~~~p--~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~-~~ 206 (301)
T 2vpj_A 136 NIDQWSMLGDMQ--TA--REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVAL-LN 206 (301)
T ss_dssp TTTEEEEEEECS--SC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEE-ET
T ss_pred CCCeEEECCCCC--CC--cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEE-EC
Confidence 876533321111 11 111122222 45778887754 35778887532 222221111 11 112222 25
Q ss_pred CCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeCCcc
Q 024451 150 GNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDTLLA 217 (267)
Q Consensus 150 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~~~~ 217 (267)
++.++.|+.+ ..+.+||+++.+-... ... .........+. .++.+++.|+.+ ..+.+||..+.
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV--TSM-TTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEE--CCC-SSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEEC--CCC-CCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 6777777764 4689999987653221 111 11111112222 256677777654 35777887543
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.75 E-value=2.8 Score=32.61 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=69.8
Q ss_pred CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcc
Q 024451 59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVAS 128 (267)
Q Consensus 59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~ 128 (267)
+.+++.|+.+ ..+.+||..+..-...-. .... ..-.+.... ++++++.|+.+ ..+.+||+...
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~- 194 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTR--RIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN- 194 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred CEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCcc--ccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC-
Confidence 3455566543 357889988764333211 1111 111122222 45778887754 35778887532
Q ss_pred cceEEeeccc-c-ceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 129 RAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 129 ~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
....+.... . .-.++... +++.++.|+.+ ..+.+||+.+.+-... .. ..........+. .++.+++
T Consensus 195 -~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~--~~-~p~~r~~~~~~~--~~~~i~v 267 (308)
T 1zgk_A 195 -EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV--AP-MKHRRSALGITV--HQGRIYV 267 (308)
T ss_dssp -EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC--CC-CSSCCBSCEEEE--ETTEEEE
T ss_pred -eEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC--CC-CCCCccceEEEE--ECCEEEE
Confidence 222221111 1 11222222 56777777764 4688999887643211 11 111111112222 2566777
Q ss_pred EEEeC-----CeEEEEeCCcc
Q 024451 202 AGYSN-----GDCYVWDTLLA 217 (267)
Q Consensus 202 ~g~~d-----g~i~i~d~~~~ 217 (267)
.|+.+ ..+.+||..+.
T Consensus 268 ~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 268 LGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ECCBCSSCBCCEEEEEETTTT
T ss_pred EcCcCCCcccceEEEEcCCCC
Confidence 76643 35777876543
No 322
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.56 E-value=3.7 Score=35.31 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=51.8
Q ss_pred cceeEEEEecCCCEEEEee-CCCcEEEEeCCCCee-----e----EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe
Q 024451 139 GDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQ-----L----QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 208 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-----~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 208 (267)
..-+.+.++|+|++++.++ -+.++.++|++.-.. + .....+ .+. .......+|+++|....+-.-|.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~-GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PEL-GLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBC-CSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccC-CCcccEEEECCCCceEeeeeecce
Confidence 3457899999999988776 578999999874211 0 001111 111 224678899999966666678999
Q ss_pred EEEEeCCc
Q 024451 209 CYVWDTLL 216 (267)
Q Consensus 209 i~i~d~~~ 216 (267)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999754
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.37 E-value=3.1 Score=32.30 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=104.9
Q ss_pred CCCCCeEEEccCC----CeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----C-----CeE
Q 024451 6 SPTGQSVACGGLD----SVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----D-----QTC 71 (267)
Q Consensus 6 ~~~g~~l~~~~~d----~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-----~~v 71 (267)
.-++.+++.||.+ ..+.+||.....=. ...+|..+ .+|. .+. . ++.+++.|+. + ..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~----~~~-~--~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR--SGLA----GCV-V--GGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC--BSCE----EEE-E--TTEEEEECCEEEETTEEEECCCE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc--ccce----EEE-E--CCEEEEECCCcCCCCCCeecceE
Confidence 3466778888742 35677776542100 01112111 1232 122 2 2345566655 2 457
Q ss_pred EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-----CeEEEEeCCCcccceEEeeccc-cc-eeEE
Q 024451 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-----STARLWDTRVASRAVRTFHGHE-GD-VNTV 144 (267)
Q Consensus 72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~~-i~~~ 144 (267)
.+||..+..-...-. ..... .. .++... ++++++.|+.+ ..+.+||..... ...+.... .. -.++
T Consensus 93 ~~~d~~~~~W~~~~~--~p~~r-~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 93 DCYNPMTNQWSPCAP--MSVPR-NR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGV 164 (308)
T ss_dssp EEEETTTTEEEECCC--CSSCC-BT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEE
T ss_pred EEECCCCCeEeECCC--CCcCc-cc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEE
Confidence 888988764333211 11111 11 122222 45777777644 357778875322 22221111 11 1222
Q ss_pred EEecCCCEEEEeeCC-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEEEEeC
Q 024451 145 KFFPDGNRFGTGSDD-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCYVWDT 214 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~i~d~ 214 (267)
... +++.++.|+.+ ..+.+||+.+.+-... ... .........+.+ ++.+++.|+.+ ..+.+||.
T Consensus 165 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 165 AVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAM-NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp EEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCC-CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence 222 56777777754 4588899877543211 111 111111122222 66677777654 56899997
Q ss_pred CccceeeecccccCCccceEEEEEECCCCCeEEEeECCC-----cEEEEec
Q 024451 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-----NLKIWAF 260 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-----~i~~w~~ 260 (267)
.+.+=.. ...++..... ..++. -++++++.|+.++ .+.+|++
T Consensus 239 ~~~~W~~-~~~~p~~r~~-~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 239 ETETWTF-VAPMKHRRSA-LGITV--HQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp TTTEEEE-CCCCSSCCBS-CEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred CCCcEEE-CCCCCCCccc-eEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence 6543211 1111111111 11122 2577888887653 3555654
No 324
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.11 E-value=3.6 Score=32.44 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=95.2
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeE-EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTC-VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
+.++.+.+.+++ ..++ ++.++.| +-.|--..-.. .. .+....+..+.+.++ +++++.+...+..+-+|-.
T Consensus 122 ~~~~~i~~~~~~-~~~~-~~~~g~v~~S~DgG~tW~~-~~-----~~~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 122 GSPRLIKALGNG-SAEM-ITNVGAIYRTKDSGKNWQA-LV-----QEAIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp SCEEEEEEEETT-EEEE-EETTCCEEEESSTTSSEEE-EE-----CSCCCCEEEEEECTT-SCEEEEETTSSEEEEECTT
T ss_pred CCeEEEEEECCC-CEEE-EeCCccEEEEcCCCCCCEE-ee-----cCCCcceEEEEEcCC-CcEEEEECCCcEEEEeCCC
Confidence 345667766543 4444 4455544 33332111111 11 123446778888764 5566555444444444421
Q ss_pred CcccceEEe-eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEE
Q 024451 126 VASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 126 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~ 202 (267)
......+ ......+..+.+.+++..+ ..+.+|.+.+.+.+.++. +...... .....+.++.+.+++..+++
T Consensus 193 --G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 193 --QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp --CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred --CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 1112222 2334567888888887755 455678777664322221 1111101 11124788899988877776
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
|. +|.++ +....++.-...... ......+..+.|.+++++++ ++.+|.|.-++
T Consensus 267 g~-~g~i~-~S~DgG~tW~~~~~~-~~~~~~~~~v~~~~~~~~~~-~G~~G~i~~~~ 319 (327)
T 2xbg_A 267 GG-AGALL-CSQDGGQTWQQDVDV-KKVPSNFYKILFFSPDQGFI-LGQKGILLRYV 319 (327)
T ss_dssp ES-TTCEE-EESSTTSSCEECGGG-TTSSSCCCEEEEEETTEEEE-ECSTTEEEEEC
T ss_pred eC-CCeEE-EeCCCCcccEEcCcc-CCCCCCeEEEEEECCCceEE-EcCCceEEEEc
Confidence 64 66663 322222211111100 11224567787876555544 56788766553
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.70 E-value=4.3 Score=32.51 Aligned_cols=239 Identities=13% Similarity=0.100 Sum_probs=112.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccc----ccccCCeeeEEEEEEecC---CCeeEEE--eeCCCeEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS----RMLSGHKGYVSCCQYVPD---EDTHLIT--SSGDQTCV 72 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~---~~~~l~s--~~~d~~v~ 72 (267)
.++|.|+|+++++--..|.|++++.... ..... ............++++|+ +..+.++ ...++.|.
T Consensus 36 ~ia~~pdG~llVter~~G~I~~v~~~~g-----~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 36 GLAPLPGGDLLVSSRDEATITRVDAKTG-----RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTC-----CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred EEEEcCCCcEEEEEecCCEEEEEECCCC-----cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 4689999998888776888888864321 11111 112233456778999884 3333332 22445566
Q ss_pred EEeCCCC--------eeEEEeCC-ccccCCccceEEEEEeCCCCeEEEEecC-------------CCeEEEEeCCCcc--
Q 024451 73 LWDITTG--------LRTSVFGG-EFQSGHTADVLSVSISGSNSRMFVSGSC-------------DSTARLWDTRVAS-- 128 (267)
Q Consensus 73 iwd~~~~--------~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~s~~~-------------d~~i~iwd~~~~~-- 128 (267)
-|..... ....++.. .....|. ...+.|.+ ++.++++.+. .|.|.=.+.....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6655431 11111110 0112232 34567775 4567776542 2333222332110
Q ss_pred -----cceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeE--EEEee-cCCC----------CCCcEE
Q 024451 129 -----RAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQ--VYYQQ-HGEN----------EIPHVT 189 (267)
Q Consensus 129 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~--~~~~~-~~~~----------~~~~v~ 189 (267)
.....-.+|.. ...++|+|++.++++- +.|+.=.|--+..+...- ..... .... ......
T Consensus 188 ~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 188 GNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp TCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 00011124432 4678999987766553 344322332222221100 00000 0000 001234
Q ss_pred EEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 190 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
.++|. ++..+.+....+.|....+...+.......+.....+++..++..|||.++++-+
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 55665 4556666666666666665433221111111122346789999999998777644
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.86 E-value=4.7 Score=31.37 Aligned_cols=104 Identities=8% Similarity=0.075 Sum_probs=52.6
Q ss_pred CeeEEEeeCC--------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-C-----CeEEEEeC
Q 024451 59 DTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-D-----STARLWDT 124 (267)
Q Consensus 59 ~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d-----~~i~iwd~ 124 (267)
+..++.|+.+ ..+.+||..+..-...-. .... ..-.+.... ++++++.|+. + ..+.+||.
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV--VYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC--CBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEET
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc--ccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeC
Confidence 3455666632 458889998764332211 1111 111122222 4567788776 2 35778887
Q ss_pred CCcccceEEeeccc-cc-eeEEEEecCCCEEEEeeCCC-----cEEEEeCCCCe
Q 024451 125 RVASRAVRTFHGHE-GD-VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGH 171 (267)
Q Consensus 125 ~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 171 (267)
... ....+.... .. -.++.. -+++.++.|+.++ .+.+||+.+.+
T Consensus 173 ~~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 173 KKF--EWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTT--EEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCC--eEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 632 222222111 11 122222 2567777777654 58889987764
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.83 E-value=4 Score=30.50 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=90.3
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC--eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee---
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--- 81 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--- 81 (267)
|...+|.....| + +|--..|...........+..++ =..+..++|+|++. |... .++.+.--+..+...
T Consensus 2 ~~~~~l~~v~~d-~--~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~--LYaV-~~G~Ly~~~~~t~~~~~W 75 (236)
T 1tl2_A 2 GGESMLRGVYQD-K--FYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE--LYGV-LNDKIYKGTPPTHDNDNW 75 (236)
T ss_dssp CCCCCEEEEETT-E--EEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCCH
T ss_pred CcceEEEEEeCC-c--EEecCCCCCcccchhhhccccCccccccceeEEECCCcc--EEEE-eCCeEEEECCCCCCcccc
Confidence 455778888887 4 66655554433222111111122 13567899999653 4444 667665444433110
Q ss_pred ---EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-----eEEe-eccccceeEEEEecCCCE
Q 024451 82 ---TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTF-HGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 82 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-----~~~~-~~~~~~i~~~~~~~~~~~ 152 (267)
...+.. .+-.. ...+.+.+ ++.+.++ .||.|.-++....... ...+ ..-=..+..+.|.|+|.+
T Consensus 76 ~~s~t~IG~---~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 76 MGRAKKIGN---GGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp HHHCEEEEC---SCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred cccccEecc---ccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence 001100 01111 34566664 5666665 6699887775322110 0111 111145789999999987
Q ss_pred EEEeeCCCcEEEEeCCCCe-e----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451 153 FGTGSDDGTCRLFDIRTGH-Q----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 210 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~-~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 210 (267)
.+.. |+.+.-...-++. . ........ .-..-..+.|++++.+.++. +|.++
T Consensus 149 yav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~---g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 149 YAVH--GQQFYKALPPVSNQDNWLARATKIGQG---GWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEE--TTEEEEECCCSSTTCCHHHHCEEEESS---SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEe--CCcEEecCCCCCCCcccccccceeccC---CcceEEEEEECCCCcEEEEe--CCeEE
Confidence 7766 6765322211110 0 00011100 00123446688888877776 77543
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.21 E-value=9.4 Score=33.77 Aligned_cols=157 Identities=8% Similarity=0.045 Sum_probs=76.5
Q ss_pred eeEEEeeCC----CeEEEEeCCCCeeEEEe-CCc-cccCCccceEEEEEeCCCCeEEEEecCCC------eEEEEeCCCc
Q 024451 60 THLITSSGD----QTCVLWDITTGLRTSVF-GGE-FQSGHTADVLSVSISGSNSRMFVSGSCDS------TARLWDTRVA 127 (267)
Q Consensus 60 ~~l~s~~~d----~~v~iwd~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~------~i~iwd~~~~ 127 (267)
..++.|+.+ ..+.+||..+..-...- ... ........-.++.....++++++.||.++ .+.+||....
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 456666643 45788888776433322 100 00001111123333321457788877543 4677777532
Q ss_pred ccceEEeeccc-c-ceeEEEEecCCCEEEEeeCCC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEE
Q 024451 128 SRAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFA 202 (267)
Q Consensus 128 ~~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~ 202 (267)
....+.... . .-+++....+++.++.||.++ .+.+||+.+.+-...-.............++.+..+ +.+++.
T Consensus 479 --~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 479 --EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp --EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred --cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 222221111 1 112333334788888888654 689999987643211100000001111233455555 666677
Q ss_pred EEe--C-----CeEEEEeCCccc
Q 024451 203 GYS--N-----GDCYVWDTLLAK 218 (267)
Q Consensus 203 g~~--d-----g~i~i~d~~~~~ 218 (267)
|+. + ..+..||..+.+
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 765 2 468899976654
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.89 E-value=15 Score=35.61 Aligned_cols=218 Identities=14% Similarity=0.184 Sum_probs=110.6
Q ss_pred cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
+...+|.|-|+..+.+. ..+.+.+ .+. --+|.. . +++--...++.|+|+++..+...+. -..
T Consensus 45 ~~~~~vvIidl~~~~~~-----~rrpi~A-dsA----IMnP~~-~-iiALrag~~lQiFnl~~k~klks~~------~~e 106 (1630)
T 1xi4_A 45 GEQAQVVIIDMNDPSNP-----IRRPISA-DSA----IMNPAS-K-VIALKAGKTLQIFNIEMKSKMKAHT------MTD 106 (1630)
T ss_pred CCCceEEEEECCCCCCc-----ccccccc-hhh----ccCCCc-c-eEEEecCCeEEEeehHHhhhhcccc------cCC
Confidence 34457888888765432 1111111 111 225643 3 3333346789999998876655432 234
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc----ccceeEEEEecCCCEEEEee-------CCCcEEE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGS-------DDGTCRL 164 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i 164 (267)
+|..-.|-.++.--++| +..|.-|++.....+.+.+.-| +..|-.-..+++.+.++..| -.|.+.+
T Consensus 107 ~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 56666776443322333 3479999986444454444433 34466666678888766433 3477888
Q ss_pred EeCCCCeeeEEEEee-------cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc---c-----eeeecccccC-
Q 024451 165 FDIRTGHQLQVYYQQ-------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA---K-----VVLNLGSLQN- 228 (267)
Q Consensus 165 wd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~-----~~~~~~~~~~- 228 (267)
|..+.+.. +.+-++ ...+...+..-+||.... ...+.++|-++... . ....+...+.
T Consensus 184 yS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~ 256 (1630)
T 1xi4_A 184 YSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (1630)
T ss_pred eecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence 87764321 110000 000011111112222111 11368888886432 0 0011111111
Q ss_pred CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 229 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
...-|| ++-.++....+..-+.-|.+.+||+..
T Consensus 257 ~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 257 QNDFPV-AMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred ccCcce-EEEeccccCEEEEEecCceEEEEeccc
Confidence 122233 566777666777778889999998754
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.60 E-value=6.6 Score=31.10 Aligned_cols=142 Identities=11% Similarity=-0.009 Sum_probs=61.3
Q ss_pred CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCcccceEEeecc---cc
Q 024451 69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVASRAVRTFHGH---EG 139 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~~~~~~~~~~~---~~ 139 (267)
..+.+||..+..-...-... ..... -.++... ++++++.|+.+ ..+..+|+.........+... ..
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p--~~~~~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESP--WYGTA-GAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCCCB-SCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred ccEEEEeCCCCcEEECCCCC--CCCcc-cccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 57889999876543321111 01111 0223332 45677777642 346667652112222222211 11
Q ss_pred ceeEEEEecCCCEEEEeeCC----------------------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 140 DVNTVKFFPDGNRFGTGSDD----------------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
.........+++.++.|+.+ ..+.+||+.+.+-... ...... ...-.+ ...++
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~-r~~~~~--~~~~~ 317 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS--GELSQG-RAYGVS--LPWNN 317 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE--EECSSC-CBSSEE--EEETT
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC--CCCCCC-ccccee--EEeCC
Confidence 11111222356777777632 2577899876543221 111111 111122 23466
Q ss_pred CEEEEEEeCC------eEEEEeCCcccee
Q 024451 198 RLLFAGYSNG------DCYVWDTLLAKVV 220 (267)
Q Consensus 198 ~~l~~g~~dg------~i~i~d~~~~~~~ 220 (267)
.+++.|+.++ .+.++++...+..
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 7777776542 3555566555443
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.57 E-value=4.1 Score=32.54 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=64.6
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe--CCCCeEEEEe-cCCCeEEEEeCCCcccceEEeec
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS--GSNSRMFVSG-SCDSTARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~ 136 (267)
..++.++.||.|.-.|.++++....+... ....+....-. +.++..++.. ..||.|..++...+... ..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeecc
Confidence 46888999999999999999887776432 00111111000 0122344444 57899998887643221 11111
Q ss_pred cccce--eEEEEe-----------cCCCEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451 137 HEGDV--NTVKFF-----------PDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 137 ~~~~i--~~~~~~-----------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 176 (267)
. ..+ .-+... ..+..+++++.++.+--.|.++|+.+..+
T Consensus 86 ~-~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 86 R-QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp H-HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred c-cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 0 001 001110 13557888999999999999999877654
No 332
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.16 E-value=9 Score=32.05 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=57.7
Q ss_pred ceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCe---eeEEEEeecCC----CCCCcEEEEEEccC---CCEEEEEEe-C-
Q 024451 140 DVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGE----NEIPHVTSIAFSIS---GRLLFAGYS-N- 206 (267)
Q Consensus 140 ~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~~~~~v~~~~~s~~---~~~l~~g~~-d- 206 (267)
.-..++|.|++. .+..+-+.|.|++++..... .+..+...... ........++|+|+ +.+|.+..+ +
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 347889999985 34445678999999754221 11111100100 11235788999996 334444332 1
Q ss_pred -----------CeEEEEeCCc----------cceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 207 -----------GDCYVWDTLL----------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 207 -----------g~i~i~d~~~----------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
..|.-|.... .+.+.........|. ...|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence 1333354321 122222211123465 478999999987776554
No 333
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.64 E-value=8.1 Score=30.86 Aligned_cols=217 Identities=14% Similarity=0.205 Sum_probs=117.5
Q ss_pred cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
+.+.+|.+-|+..+.+ +..+.+.+ ...| -+|.. ..+|-- ...+++|+|+++..+...+. -.+
T Consensus 46 ~~~~~VvIiDl~n~~~-----~~Rrpi~A-dsAI----MnP~~-~ViALr-ag~~LQiFnletK~klks~~------~~e 107 (365)
T 2xzh_A 46 GEQAQVVIIDMNDPSN-----PIRRPISA-DSAI----MNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHT------MTD 107 (365)
T ss_dssp TTEEEEEEEETTSTTS-----CEEEECCC-SEEE----ECSSS-SEEEEE-ETTEEEEEETTTTEEEEEEE------CSS
T ss_pred CCCCEEEEEECCCCCC-----cccccccc-ceee----eCCCc-cEEEEe-cCCeEEEechHHhhhhccee------cCC
Confidence 3445788889876542 12222222 2222 26754 344433 36789999999988777653 235
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc----cceeEEEEecCCCEEEEee-------CCCcEEE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDVNTVKFFPDGNRFGTGS-------DDGTCRL 164 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~i~i 164 (267)
.|..-.|-.++.--++| +..|.-|++.....+.+.+.-|. ..|-.-..+++.+.++..| -.|.+.+
T Consensus 108 ~VvfWkWis~~~L~lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp CEEEEEECSSSEEEEEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEEecCCCeEEEEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 67777777543322333 33799999876556666665543 3456666678888765443 2367888
Q ss_pred EeCCCCeeeEEEEeecCCCCCCcEEEE-EEccCC----C-EEEEEEe---CCeEEEEeCCcc---c-----eeeeccccc
Q 024451 165 FDIRTGHQLQVYYQQHGENEIPHVTSI-AFSISG----R-LLFAGYS---NGDCYVWDTLLA---K-----VVLNLGSLQ 227 (267)
Q Consensus 165 wd~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~----~-~l~~g~~---dg~i~i~d~~~~---~-----~~~~~~~~~ 227 (267)
|..+.... +.+ + ++ ..+. .+-.+| . .+..+.. .+.+++-++... . ....+...+
T Consensus 185 YS~er~~s-Q~i-e----Gh---aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp 255 (365)
T 2xzh_A 185 YSVDRKVS-QPI-E----GH---AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 255 (365)
T ss_dssp EETTTTEE-EEE-C----CS---EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT
T ss_pred Eeeccccc-cee-e----ee---eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc
Confidence 88765422 111 1 11 1111 111111 1 2222221 258888886332 1 111111111
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..-.+--.++-.++....+..-+.-|.+.+||+..
T Consensus 256 ea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 256 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred cccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 11122233577777667777778899999999754
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.73 E-value=3 Score=33.30 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=60.3
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeecc-ccceeEEEE--ec-CCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCC
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKF--FP-DGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGEN 183 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~--~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 183 (267)
+++.++.||.|.-.|.+.+.... .+... ..+.....- .+ ++..++.. +.||.+..+|..++.....+......
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W-~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv- 89 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIW-SIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV- 89 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE-EECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred EEEEEeCCCeEEEEECCCCcEEE-EecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence 56677888888888876543322 22221 011111110 01 22334443 68999999998877543222111100
Q ss_pred CCCcEEE----EEE----ccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 184 EIPHVTS----IAF----SISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 184 ~~~~v~~----~~~----s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
...++.. +.. +..+..+++|+.+|.++-.|+.+++.+..+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 1111111 000 015668899999999999999988877654
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.53 E-value=3.4 Score=38.05 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=30.2
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 175 (267)
.+.++...++..++.+-+.|+++|+|++.+++++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 356677777888999999999999999999887654
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.49 E-value=11 Score=31.28 Aligned_cols=107 Identities=7% Similarity=0.050 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEeec------cccceeEEEEecC---CCEEE-EeeC-------
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHG------HEGDVNTVKFFPD---GNRFG-TGSD------- 158 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~------~~~~i~~~~~~~~---~~~l~-~~~~------- 158 (267)
...+++.+ +++++++....+.|++++...... .+..+.. .......++|+|+ +..|. +-+.
T Consensus 29 P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred ceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45677775 456766655445688776532211 1111111 1345678999995 44444 3332
Q ss_pred -----CCcEEEEeCCCC----eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 159 -----DGTCRLFDIRTG----HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 159 -----d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
...|.-++.... .....+..............++|.|+|.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124544554322 1112222211111122468999999998776644
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=86.68 E-value=22 Score=33.66 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=63.8
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC------CCEEEEeeC-CCcEEEEeC
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD------GNRFGTGSD-DGTCRLFDI 167 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-d~~i~iwd~ 167 (267)
..|...+.+. . +++.+. ++.+.++++.........-..-...|.|+++.|. +++++.|.. |++++|+++
T Consensus 514 ~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 514 KNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred CEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 3455555442 3 344444 5778887765321111111122457999998763 368899986 999999999
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEEeC
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~ 214 (267)
.+.+.+... .-.. .....++.+. ....+|.+|-.||.+.-+.+
T Consensus 590 ~~l~~~~~~--~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 590 PSFELLHKE--MLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp TTCCEEEEE--ECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred CCCCeEEEE--ECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 865443221 1111 1123444433 23468899999998765543
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.43 E-value=17 Score=32.15 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=74.7
Q ss_pred CCCeEEEccCCC------eEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCC
Q 024451 8 TGQSVACGGLDS------VCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITT 78 (267)
Q Consensus 8 ~g~~l~~~~~d~------~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~ 78 (267)
++++++.||.++ .+.+||.....= ....+|.. ..+|. +....++ ..++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~--R~~h~-----~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT--RFRHS-----ACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC--CBSCE-----EEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC--cccce-----EEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 777888887543 466777654210 00111111 12232 2222233 4566666544 688999987
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC--C-----CeEEEEeCCCccc----ceEEeecc--ccc-eeEE
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC--D-----STARLWDTRVASR----AVRTFHGH--EGD-VNTV 144 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~--d-----~~i~iwd~~~~~~----~~~~~~~~--~~~-i~~~ 144 (267)
..-...-..............+.+....+++++.||. + ..+.+||+....- ....+... ... -.++
T Consensus 523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~ 602 (695)
T 2zwa_A 523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602 (695)
T ss_dssp TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence 6543322100000011111223344443678888876 2 3578888764330 02222111 111 1233
Q ss_pred EEecCCCEEEEeeCC--------CcEEEEeCCCCe
Q 024451 145 KFFPDGNRFGTGSDD--------GTCRLFDIRTGH 171 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~ 171 (267)
....+++.++.||.+ ..+.+||+.+.+
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 333336777777743 458888887654
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=85.94 E-value=14 Score=30.79 Aligned_cols=220 Identities=12% Similarity=0.147 Sum_probs=117.6
Q ss_pred cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
+.+.+|.+-|+..+.+. ..+.+.+ .+ .--+|.. ..++-= ...++.|+|+++..+...+. ..+
T Consensus 45 ~~~~~vvIiDl~~~~~~-----~rrpi~A-ds----AIMnP~~-~iiALr-ag~~lQiFnle~K~klks~~------~~e 106 (494)
T 1bpo_A 45 GEQAQVVIIDMNDPSNP-----IRRPISA-DS----AIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHT------MTD 106 (494)
T ss_dssp TTCCEEEEEETTSTTSC-----EEEECCC-SE----EEECSSS-SCEEEE-ETTEEEEEETTTTEEEEEEE------CSS
T ss_pred CCCCeEEEEECCCCCcc-----eeccccc-ce----eeeCCCC-cEEEEe-cCCeEEEEchHHhhhhccee------cCC
Confidence 34558888888765421 2222222 22 2236754 344433 37799999999988776553 234
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc----cceeEEEEecCCCEEEEee-------CCCcEEE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDVNTVKFFPDGNRFGTGS-------DDGTCRL 164 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~i~i 164 (267)
.|..-.|-.++ .++-.+ +..|.-|++.....+.+.+.-|. ..|-.-..+++.+.++..| -.|.+.+
T Consensus 107 ~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 107 DVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp CCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 56666676443 232222 34799999875556666665543 3466667788888776443 2367888
Q ss_pred EeCCCCeeeEEEEeecCCCCCCcEEEEEEc--cCC-CEEEEEEe---CCeEEEEeCCcc--------ceeeecccccCCc
Q 024451 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFS--ISG-RLLFAGYS---NGDCYVWDTLLA--------KVVLNLGSLQNSH 230 (267)
Q Consensus 165 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~-~~l~~g~~---dg~i~i~d~~~~--------~~~~~~~~~~~~~ 230 (267)
|..+.... +.+ + ++...-..+.+. +.. ..+..+.. .+.+++-++... +....+...+..-
T Consensus 184 YS~er~~s-Q~i-e----Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~ 257 (494)
T 1bpo_A 184 YSVDRKVS-QPI-E----GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 257 (494)
T ss_dssp EESTTCCE-EEE-C----CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred eecccccc-chh-e----eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence 88765321 111 1 110111111111 000 12222222 378999886432 1111111111111
Q ss_pred cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 231 EGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+--.++-+++....+..-+.-|.+.+||+..
T Consensus 258 ~DFPvamqvs~kygviyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (494)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred cCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence 22234577787777777788999999999754
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.60 E-value=7.2 Score=35.97 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
.+.++...++ ..++++-+.|+++|+|++.++......
T Consensus 237 ~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeee
Confidence 3455555554 468999999999999999998766654
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.76 E-value=15 Score=29.27 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=40.5
Q ss_pred EEEEEEcc-------CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 188 VTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 188 v~~~~~s~-------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+..+.|.. ++.++++-...+.|...++...+..... .+.......+..+++.|||.++++.. +..=+||.
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~rp~~v~~~pdG~lyv~td-~~~g~I~r 349 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDG-RILTDRGQRIRDVRTGPDGYLYVLTD-ESSGELLK 349 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEE-EESGGGCCCEEEEEECTTSCEEEEEC-STTEEEEE
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeE-EcccCCCCceeEEEECCCCcEEEEEe-CCCCEEEE
Confidence 45666653 4667777667788887776543322111 11112234788999999998766432 22234554
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.21 E-value=5.9 Score=31.68 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=37.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccc--eeeecccccCCccceEEEEEECCC----CCeEEEe
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSAD----GSALCTG 249 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~sg 249 (267)
....++|.|+|+.++++...|.|++++..... .+...........+....++++|+ +.+.++-
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 36899999999934445567999999853211 111111111123345789999995 4444443
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=81.40 E-value=17 Score=28.17 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=51.0
Q ss_pred CeeEEEeeCC-------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCC
Q 024451 59 DTHLITSSGD-------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTR 125 (267)
Q Consensus 59 ~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~ 125 (267)
+..++.|+.+ ..+.+||..+..-...-... ....-.+.... ++++++.|+.+ ..+.++|..
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP----IKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS----SCEESCEEEEE--TTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC----CcccccEEEEE--CCEEEEEcCCCCCCCccceEEEEcCC
Confidence 3455666643 34778888876533321110 00111122222 45677777642 357888876
Q ss_pred CcccceEEeeccc-c-ceeEEEEecCCCEEEEeeCC-----CcEEEEeCCCCe
Q 024451 126 VASRAVRTFHGHE-G-DVNTVKFFPDGNRFGTGSDD-----GTCRLFDIRTGH 171 (267)
Q Consensus 126 ~~~~~~~~~~~~~-~-~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 171 (267)
.. ....+.... . .-.++.. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 184 ~~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 184 KG--DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TT--EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CC--EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 42 222222111 1 1122222 256677777643 347788887654
No 344
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.23 E-value=33 Score=26.40 Aligned_cols=133 Identities=9% Similarity=0.027 Sum_probs=64.0
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC--------CeEEEEeCCCcccceEEeecc-ccce
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGH-EGDV 141 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~~~~~~~-~~~i 141 (267)
+.+||..+..-...-. . .....-.++... ++++++.|+.+ ..+.++|.... ....+..- ....
T Consensus 69 ~~~~d~~~~~W~~~~~--~--p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~ 140 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPP--L--PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVY 140 (315)
T ss_dssp EEEEETTTTEEEECCC--B--SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCB
T ss_pred eEEecCCCCeEEECCC--C--CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCccc
Confidence 6778887764322211 1 111111222232 45777777742 35778887532 22222111 1111
Q ss_pred -eEEEEecCCCEEEEeeC-C-----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----eE
Q 024451 142 -NTVKFFPDGNRFGTGSD-D-----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DC 209 (267)
Q Consensus 142 -~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i 209 (267)
.++.. .+++.++.|+. + ..+.+||+.+.+-... ... ........++. .++.+++.|+.++ .+
T Consensus 141 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 214 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL--APM-QTARSLFGATV--HDGRIIVAAGVTDTGLTSSA 214 (315)
T ss_dssp SCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC--CCC-SSCCBSCEEEE--ETTEEEEEEEECSSSEEEEE
T ss_pred ceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC--CCC-CCchhceEEEE--ECCEEEEEeccCCCCccceE
Confidence 22222 35667777776 2 4688899887542211 110 11111112222 2667777776543 58
Q ss_pred EEEeCCcc
Q 024451 210 YVWDTLLA 217 (267)
Q Consensus 210 ~i~d~~~~ 217 (267)
.+||..+.
T Consensus 215 ~~yd~~~~ 222 (315)
T 4asc_A 215 EVYSITDN 222 (315)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88987654
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=70.71 E-value=7.3 Score=33.55 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=47.6
Q ss_pred EEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-----------c-eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------A-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165 (267)
Q Consensus 98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-----------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 165 (267)
..+.++|.....++++-.+.++.++|++.... . ..+.. -.-.-.-.+|.++|+...+..-|..|--|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence 34566766666667777888999999862110 0 11111 12234567899999777788899999999
Q ss_pred eCCC
Q 024451 166 DIRT 169 (267)
Q Consensus 166 d~~~ 169 (267)
++..
T Consensus 405 ni~~ 408 (638)
T 3sbq_A 405 NMEE 408 (638)
T ss_dssp EHHH
T ss_pred eccH
Confidence 9875
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=68.96 E-value=40 Score=26.44 Aligned_cols=20 Identities=5% Similarity=-0.069 Sum_probs=13.5
Q ss_pred CCCeEEEccCC-CeEEEeecC
Q 024451 8 TGQSVACGGLD-SVCSIFNLN 27 (267)
Q Consensus 8 ~g~~l~~~~~d-~~v~~w~~~ 27 (267)
++++++.||.+ ..+.+||..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~ 39 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQ 39 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccc
Confidence 66777777643 467777765
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.71 E-value=6 Score=37.28 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.1
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 175 (267)
+.++...++.+++++-+.|+++|+|++.+++++..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 45566667788999999999999999999987654
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.07 E-value=11 Score=33.31 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=26.7
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 176 (267)
|.++.+ +.+++++-+.|+++|+|++++++++...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 444443 4679999999999999999999866543
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.66 E-value=14 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=27.5
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
..|.++.+. +.++++-+.|+++|+||+.++......
T Consensus 222 ~~Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 346655542 468999999999999999998766554
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=58.39 E-value=46 Score=28.84 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=38.6
Q ss_pred cEEEEEEccCCCEEEEEEeC------------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451 187 HVTSIAFSISGRLLFAGYSN------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
..--++|++.|+++++-..+ ..+...+..+++.. .+.. ..-..+++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~-rf~~--~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR-RFMV--GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE-EEEE--CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEE-EEEe--CCCCccCcCeeECCCCCEEEEE
Confidence 34678999999977664322 24555565444432 2222 2345789999999999988765
No 351
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=56.95 E-value=64 Score=24.75 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=62.2
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC-------CeEEEEeCCCcccceEEeeccccc--e
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD-------STARLWDTRVASRAVRTFHGHEGD--V 141 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~--i 141 (267)
+..||..+..-...- ..... ..-.++... ++++++.|+.+ ..+.++|.... ....+.....+ -
T Consensus 80 ~~~~d~~~~~W~~~~--~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~ 151 (318)
T 2woz_A 80 FFQLDNVSSEWVGLP--PLPSA--RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYG 151 (318)
T ss_dssp EEEEETTTTEEEECS--CBSSC--BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEES
T ss_pred EEEEeCCCCcEEECC--CCCcc--ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccc
Confidence 677888776433221 11111 111222222 45677777754 24667777532 22222111111 1
Q ss_pred eEEEEecCCCEEEEeeC------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-----CeEE
Q 024451 142 NTVKFFPDGNRFGTGSD------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-----GDCY 210 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~ 210 (267)
.++.. .+++.++.|+. -..+.+||+.+.+-... ... .........+. .++.+++.|+.+ ..+.
T Consensus 152 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~--~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 225 (318)
T 2woz_A 152 HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL--APM-KTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVE 225 (318)
T ss_dssp CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE--CCC-SSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEE
T ss_pred cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC--CCC-CCCcccceEEE--ECCEEEEEcCcCCCCccceEE
Confidence 12222 35667777764 23588999987643221 111 11111112222 356666666543 3577
Q ss_pred EEeCCcc
Q 024451 211 VWDTLLA 217 (267)
Q Consensus 211 i~d~~~~ 217 (267)
+||..+.
T Consensus 226 ~yd~~~~ 232 (318)
T 2woz_A 226 AFDLKTN 232 (318)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 8887654
No 352
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.48 E-value=77 Score=27.44 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=37.8
Q ss_pred eEEEEecCCCEEEEeeCC------------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 142 NTVKFFPDGNRFGTGSDD------------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
..|.|+|.|+++++--.+ ..+.+.+..+++... +.... ....++.++|+|+++.|++..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r-f~~~P---~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVGP---IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE-EEECC---TTCEEEEEEECTTSSEEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEE-EEeCC---CCccCcCeeECCCCCEEEEEE
Confidence 568999999977653221 235555666555433 33211 235789999999999888764
No 353
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=55.10 E-value=68 Score=24.50 Aligned_cols=122 Identities=13% Similarity=-0.017 Sum_probs=69.5
Q ss_pred cceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 139 GDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 139 ~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
..|..+.... +..+++..+.+|.++-..+..-... .-... ....+...+..+........++..+++|.++.++...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~-i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPI-IKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEEC-SCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEE-EecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 3444443321 4678999999999999887542100 00000 0011223456665555666888888999988887532
Q ss_pred ccee------eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 217 AKVV------LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 217 ~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
-... .....+. -.+.|..+...+++.+++..+..|.++...+..+
T Consensus 147 ip~~gR~a~Gv~~i~L~--~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLE--KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp SCBCCTTCCCEECCCCC--TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred CCCcCCCCCCEEEEccC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 1110 0011121 2345655554455678888899999998876544
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.40 E-value=66 Score=27.77 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=39.6
Q ss_pred cEEEEEEccCCCEEEEEEe------------CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 187 HVTSIAFSISGRLLFAGYS------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
....+.|+++|.+.++... ...++.++..+++... +. .......++.++|+||++.|...-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl--~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FM--VGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EE--ECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-EE--eCCCCccccCCEECCCCCEEEEEE
Confidence 4578999999988774322 2267777765554322 21 112345789999999999887643
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=50.00 E-value=87 Score=24.22 Aligned_cols=161 Identities=10% Similarity=0.010 Sum_probs=76.1
Q ss_pred CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEe---cCCCeEEEEeCCCcccceEEeeccccceeEEE
Q 024451 69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 145 (267)
..|+..++.......... ..... +++.+..++.+. ..+..|..-++. ......+..+.. ..
T Consensus 88 ~~Iy~i~~dg~~~~~l~~--------~~~~~--~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~~~~----~~ 151 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDP--------DPCIY--ASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKNHYL----FT 151 (302)
T ss_dssp EEEEEEETTSCCCEEEEC--------SCEEE--EEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEESSCC----CC
T ss_pred CeEEEEeCCCCcceEeec--------CCccE--EEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeCCCc----eE
Confidence 357777776654333221 11122 333344544443 233345555554 222333433322 35
Q ss_pred EecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC--eEEEEeCCccceeee
Q 024451 146 FFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAKVVLN 222 (267)
Q Consensus 146 ~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~~~~~~ 222 (267)
++|+++.|.-.+. ...|..-++..+.... +.. . .. ...++|++.+|+-...++ .|..-++.......
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l~~--~-----~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~- 221 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSEAL-FYD--C-----NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV- 221 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEEEE-EEC--S-----CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCEEE-EeC--C-----Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-
Confidence 6777877764443 5678888876654332 221 1 11 123568888887665432 45555544322111
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeEC--CCcEEEEecCce
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSW--DTNLKIWAFGGY 263 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~--dg~i~~w~~~~~ 263 (267)
+ -...+ ..|+|+++.|.-++. .+.|..=+++|.
T Consensus 222 L------t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 222 L------TEANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp C------SCSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred E------eCCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 1 01122 236677777765432 233444445543
No 356
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.82 E-value=1.5e+02 Score=26.12 Aligned_cols=191 Identities=11% Similarity=0.194 Sum_probs=101.6
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
...|.++...+++ .|-.|+.+| +..||..+..-.. .. ......|.++... ++.+.+ ++.+ .+..+|..
T Consensus 62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~--~~---~~~~~~i~~i~~~--~g~lWi-gt~~-Gl~~~~~~ 129 (758)
T 3ott_A 62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQ--PE---TDFPTDVRTMALQ--GDTLWL-GALN-GLYTYQLQ 129 (758)
T ss_dssp SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECC--CS---CCCCSCEEEEEEE--TTEEEE-EETT-EEEEEETT
T ss_pred CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEEC--cc---cCCCceEEEEEec--CCcEEE-EcCC-cceeEeCC
Confidence 3467877665543 455566655 7789987753211 10 1112345555433 445554 3444 57778865
Q ss_pred CcccceEEee-----ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccCCCE
Q 024451 126 VASRAVRTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 126 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~ 199 (267)
.. ....+. .....|.++...+++...+ ++.+ -+..+|..+.+. ..+..... ......|.++..++++..
T Consensus 130 ~~--~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~ 204 (758)
T 3ott_A 130 SR--KLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQC 204 (758)
T ss_dssp TC--CEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTE
T ss_pred CC--eEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCE
Confidence 32 222231 1124577777777777655 4443 577788766542 22111110 011224788887777765
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
|-.|+. +.|..+|....+.. ....+ ....|.++...++|.+.+ |+.+| +.+++.
T Consensus 205 lWigt~-~Gl~~~~~~~~~~~-~~~~l---~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~ 258 (758)
T 3ott_A 205 VWIGTE-GYLFQYFPSTGQIK-QTEAF---HNNSIKSLALDGNGDLLA-GTDNG-LYVYHN 258 (758)
T ss_dssp EEEEEE-EEEEEEETTTTEEE-EEEEE---EEEEEEEEEECTTCCEEE-EETTE-EEEECC
T ss_pred EEEEEC-CCCeEEcCCCCeEE-eccCC---CCCeEEEEEEcCCCCEEE-EeCCc-eeEEec
Confidence 555554 45888987654332 11111 234588888888887766 44444 455543
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=46.54 E-value=1.1e+02 Score=24.17 Aligned_cols=124 Identities=11% Similarity=0.110 Sum_probs=71.6
Q ss_pred cceeEEEEec---CCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 139 GDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 139 ~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
..|..+..-+ +..+++..+.+|.++--.+..-.... -..... ..+...+..+........++..+++|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-LRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-CCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-ECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 3454443332 46799999999999998865421100 000000 11223455555555666788888999988887
Q ss_pred CC--cccee----eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 214 TL--LAKVV----LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 214 ~~--~~~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.. .-... .-...+.-.-.+.|.++...+++.+|+..+..|.++.-.+..+
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 65 21110 0000011122455777766666778899999999988876544
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.48 E-value=26 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=25.5
Q ss_pred EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 52 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
+...+ +..++++-+.|+++|||++.++..+...
T Consensus 243 ~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 243 MIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 33444 3468999999999999999998776654
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=38.78 E-value=1.7e+02 Score=24.32 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.7
Q ss_pred cceEEEEEECCCCCeEEEeE
Q 024451 231 EGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 231 ~~~v~~~~~~p~~~~l~sgs 250 (267)
..++..+++.|||.++++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999999888765
No 360
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=37.74 E-value=52 Score=28.01 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEEE
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
..++.|+.+|.|+=.-............+......+|. .+.++++..+|..++.++.++|-
T Consensus 401 tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 401 TIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 35677888887764332211100011111112345674 78999999999999998888774
No 361
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=37.74 E-value=86 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.022 Sum_probs=36.0
Q ss_pred EEEEEEeCCeEEEE-eCCccce-eeecccccCCccceEEEEEECCCC--CeEEEeECCCcEEE
Q 024451 199 LLFAGYSNGDCYVW-DTLLAKV-VLNLGSLQNSHEGRITCLGLSADG--SALCTGSWDTNLKI 257 (267)
Q Consensus 199 ~l~~g~~dg~i~i~-d~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~--~~l~sgs~dg~i~~ 257 (267)
.++.|+.+|.|.=. ....... +..+.. .....+|..+.++++. .+|..++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~--~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQL--FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEEC--CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecc--cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67888889866432 3222111 111111 1234688889999988 89999988877765
No 362
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=34.81 E-value=84 Score=26.48 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=35.5
Q ss_pred EEEEEEeCCeEEEEeCCccc-----eeeecccccC-CccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 199 LLFAGYSNGDCYVWDTLLAK-----VVLNLGSLQN-SHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
.++.|+.+|.|+=.-..... .......++. ....+|..+.++++..+|..++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 57778888866433221111 0001111111 23468899999999999999999887775
No 363
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=33.41 E-value=27 Score=15.34 Aligned_cols=17 Identities=24% Similarity=0.691 Sum_probs=11.8
Q ss_pred EeECCCcEEEEecCceE
Q 024451 248 TGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 248 sgs~dg~i~~w~~~~~~ 264 (267)
+++..+-.++|..+|-|
T Consensus 8 s~~r~kgarlwyvggtq 24 (26)
T 1gff_3 8 SGGKSKGARLWYVGGTQ 24 (26)
T ss_pred CCCCCCceEEEEeccee
Confidence 34556677899887765
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.05 E-value=2.4e+02 Score=24.41 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=37.8
Q ss_pred eeEEEEecCCCEEEEe-eC-----------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451 141 VNTVKFFPDGNRFGTG-SD-----------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~-~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 205 (267)
...+.|.++|.+.++. .. ...+..++..+++... +... .....++.++|+|+++.|++...
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-fl~~---P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVG---PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-EEEC---CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-EEeC---CCCccccCCEECCCCCEEEEEEe
Confidence 4578999998877632 11 1145555665555433 3221 11235899999999998888754
No 365
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=31.71 E-value=50 Score=28.22 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=35.9
Q ss_pred CEEEEEEeCCeEEEEeCCccc---eeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEE
Q 024451 198 RLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
..++.|+.+|.|+=..+.... .+.....+ .....+|. .+.+++++.+|..++.++.++|
T Consensus 414 tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v-~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 414 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSV-FKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEETTSEEEEEEEEETTTEEEEEEEEEC-CTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEEcCCCeEEEEEeCCCCccceeEEEEEe-ecCCCccccceEEccCCCeEEEEecccccee
Confidence 467788889876554332211 11111111 12245775 8899999999999988877665
No 366
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=31.38 E-value=2.7e+02 Score=24.50 Aligned_cols=203 Identities=9% Similarity=0.024 Sum_probs=97.8
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 126 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~ 126 (267)
..|+++...+++. |-.|+..| +.++......................|.++.... .+.+.+. +.+| +..++...
T Consensus 279 ~~i~~i~~D~~g~--lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWiG-t~~G-l~~~~~~~ 352 (758)
T 3ott_A 279 NIIWNIFADQEHN--IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWFG-GANG-LIRFTDPA 352 (758)
T ss_dssp SCEEEEEECTTCC--EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEEE-ETTE-EEEESCTT
T ss_pred CeEEEEEEcCCCC--EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEEe-eCCc-ceeecccc
Confidence 4588877666544 44455556 4444332211111100000001123567776654 4455543 3454 55555432
Q ss_pred cc-cceEEeec-------cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC--CCCcEEEEEEccC
Q 024451 127 AS-RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN--EIPHVTSIAFSIS 196 (267)
Q Consensus 127 ~~-~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~ 196 (267)
.. .....+.. ....|.++.-.++++..+ |+ ++-+..+|.++++.. .+....... ....|.++.-+++
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~ 429 (758)
T 3ott_A 353 GERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI-HYNIVDNTGTYNTNWTYYIFEDTA 429 (758)
T ss_dssp SSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE-EEEEECCC--CBSSSEEEEEECTT
T ss_pred cccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE-EeecCCCcCCCCCceEEEEEEcCC
Confidence 11 11112210 123477887777776544 44 457888998776432 222111111 1235778877777
Q ss_pred CCEEEEEEeCCeEEEEeCCcc-----ceee---ecccccCCccceEEEEEECCCCCeEE-EeECCCcEEEEec
Q 024451 197 GRLLFAGYSNGDCYVWDTLLA-----KVVL---NLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAF 260 (267)
Q Consensus 197 ~~~l~~g~~dg~i~i~d~~~~-----~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~dg~i~~w~~ 260 (267)
+.+-+ |+..+-|..+|.... +... ............|.++...++|++.+ .|+.+| +..++.
T Consensus 430 g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~G-l~~~d~ 500 (758)
T 3ott_A 430 GQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKG-IDKINP 500 (758)
T ss_dssp SEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSS-EEEEET
T ss_pred CCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCC-cEEEeC
Confidence 66444 555666888885421 1110 00000011123588999899998876 344444 444553
No 367
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.68 E-value=1.2e+02 Score=26.28 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=37.0
Q ss_pred CEEEEEEeCCeEEEEeCCccc---eeeeccccc-CCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 198 RLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQ-NSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
..++.|+.+|.|+=.-..... .......++ .....+|..+.++++..+|..++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 367788888876533221111 011111111 1234678899999999999999988877764
No 368
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=26.05 E-value=2.7e+02 Score=23.72 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=38.2
Q ss_pred eeEEEEecCC--CEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEE-EEEEccCCCEEEEEEeCCeEEE
Q 024451 141 VNTVKFFPDG--NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVT-SIAFSISGRLLFAGYSNGDCYV 211 (267)
Q Consensus 141 i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~g~~dg~i~i 211 (267)
.++++....+ ..+..|..||.|.=..+...... ..+..........+|. .+.+++++.+|.+++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3444444333 34567788887655544322111 1111111111123564 7889999999999987766655
No 369
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae}
Probab=25.06 E-value=1.7e+02 Score=19.98 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=33.9
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEEeECCC
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCTGSWDT 253 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~sgs~dg 253 (267)
.+.|++.|.++-.|+..-+.+.-...........|..+.|. .||..+..||.+.
T Consensus 61 ~lvGG~GGsL~~IDls~V~sI~vT~G~f~~gg~hilaltF~~~dGS~v~~GSK~y 115 (152)
T 4gx7_A 61 LLVGGNGGSLSSVDLSGVKSITATSGDFQYGGQQLVALTFTYQDGRQQTVGSKAY 115 (152)
T ss_dssp CCEECSCSEEEEEECTTEEEEEEEEEEETTSSEEEEEEEEEETTSCEEEEECSTT
T ss_pred cccccCCCcccEeehhhcEEEEEEeeeeeccCceEEEEEEEEcCCcEEEEecccc
Confidence 34556778888888766554433222112234467888886 5788888888865
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.24 E-value=3.9e+02 Score=23.93 Aligned_cols=162 Identities=11% Similarity=0.135 Sum_probs=73.5
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccC--CccceEEEEEeCCCCe-EEEEecC-C--CeE
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG--HTADVLSVSISGSNSR-MFVSGSC-D--STA 119 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~~~s~~~-d--~~i 119 (267)
.+.|.++.++|.+...++.+...+-|...+-.-..-..+.. ..... ....+.++++++.+.. +++..+. . ..-
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~-~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLND-FIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCT-TCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECcc-CCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 35789999999766667777777766544322111111111 00000 1235888888875433 3333322 1 002
Q ss_pred EEEeCCCcccceEEeecc---------ccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC--CCCCCc
Q 024451 120 RLWDTRVASRAVRTFHGH---------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPH 187 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~---------~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~ 187 (267)
.||-.....+........ ...+..++++|. .+.+..+...+. ||-...+-..-....... ......
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 333222223323222110 113567888874 345555553333 343333211111111000 011145
Q ss_pred EEEEEEccC-CCEEEEEEeC-CeEE
Q 024451 188 VTSIAFSIS-GRLLFAGYSN-GDCY 210 (267)
Q Consensus 188 v~~~~~s~~-~~~l~~g~~d-g~i~ 210 (267)
+..+.++|. ...++++..+ +.|+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 788888875 3455555544 4443
No 371
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=22.30 E-value=33 Score=18.36 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=23.7
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
|-.+.|.|--+-+-++-|.+.||.+..+.|+
T Consensus 31 ct~ltpegyaveseshpgsvqiyp~~alerv 61 (62)
T 2rh2_A 31 CTNLTPEGYAVESEAHPGSVQIYPVAALERI 61 (62)
T ss_dssp CCSSCSSEEEEEESSSTTCEEEEEGGGEEEC
T ss_pred EccccccceEEecccCCCcEEEEEhhhhhcc
Confidence 3444577766667788899999999888875
No 372
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.14 E-value=1.5e+02 Score=26.10 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEEEeCCeEEEEeCCccceeeecccccC------CccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQN------SHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
.++.|+.+|.|+=.-..............- ....+|..+.+++++++|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Done!