BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024452
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 36 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
+ L+V P+ G ++N +++ + P + R VL+R+YG ++ + E F +
Sbjct: 73 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 132
Query: 93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
+ + GP+L G F +GR+E++I +R L ++R+P +S +A KM +FH ++MP ++
Sbjct: 133 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 192
Query: 152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
L+ + +++ + + +Y+LKDE+ L K L + + FCHND+Q G
Sbjct: 193 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 252
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
NI++ E + ++ F + N++
Sbjct: 253 NILLLSEPENADSLMLVDFEYSSYNYR 279
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 36 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
+ L+V P+ G ++N +++ + P + R VL+R+YG ++ + E F +
Sbjct: 51 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAIL 110
Query: 93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
+ + GP+L G F +GR+E++I +R L ++R+P +S +A KM +FH ++MP ++
Sbjct: 111 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPH 170
Query: 152 LLWDRLRKWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
L+ + +++ + + +Y+LKDE+ L K L + + FCHND+Q G
Sbjct: 171 WLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEG 230
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
NI++ E + ++ F + N++
Sbjct: 231 NILLLSEPENADSLMLVDFEYSSYNYR 257
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 6/207 (2%)
Query: 36 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECM 92
+ L+V P+ G ++N +++ + P + R VL+R+YG ++ + E F +
Sbjct: 73 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVXFAIL 132
Query: 93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA- 151
+ + GP+L G F +GR+E++I +R L ++R+P +S +A K +FH + P ++
Sbjct: 133 AERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKXAQFHGXEXPFTKEPH 192
Query: 152 LLWDRLRKWVSVAKSFCSAKDAKEFCL--YTLKDEISMLEKELPNDHQEIGFCHNDLQYG 209
L+ +++ + + L Y+LKDE L K L + + FCHND+Q G
Sbjct: 193 WLFGTXERYLKQIQDLPPTGLPEXNLLEXYSLKDEXGNLRKLLESTPSPVVFCHNDIQEG 252
Query: 210 NIMIDEETSSITIIVSFTFLQNMLNFK 236
NI++ E + + F + N++
Sbjct: 253 NILLLSEPENADSLXLVDFEYSSYNYR 279
>pdb|2CKO|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKO|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2
pdb|2CKP|A Chain A, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKP|B Chain B, Crystal Structure Of Human Choline Kinase Alpha-2 In
Complex With Adp
pdb|2CKQ|A Chain A, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
pdb|2CKQ|B Chain B, Crystal Structure Of Human Choline Kinase Alpha 2 In
Complex With Phosphocholine
Length = 390
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 28 WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGE----GVEVFF 80
W + +D + VI +G ++N ++Q + P L R VL+R+YG G E
Sbjct: 54 WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQVGAEAMV 111
Query: 81 NRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREF 140
E F ++ + GP+L G F GR+E+FI +R L ++ P IS +A KM F
Sbjct: 112 L---ESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATF 168
Query: 141 HDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCLYTLKDEISMLEKELPN 194
H +KMP ++ L+ + K++ ++++ + Y L E+ L L +
Sbjct: 169 HGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLES 228
Query: 195 DHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
+ FCHND Q GNI++ E E S ++ F + N++
Sbjct: 229 TPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 272
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKN----NGLARNV 67
+ P +KK+ +W +D+ L+V + +TN+++++ + N + V
Sbjct: 12 TDPLYIKKICLEKVPEWNHFTEDN--LRVKQILSGLTNQLFEVGLKEETANNYNSIRTRV 69
Query: 68 LVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDP 127
L RIYG+ V+ +N E ++ MS P+LL F GR+EE+++ L D+++P
Sbjct: 70 LFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTFNGGRIEEWLYGDPLRIDDLKNP 129
Query: 128 KISELVAAKMREFHDLKMPGPRKALL---WDR--------------LRKWVSVAKSFC-- 168
I +A + +FH L RK L WDR L K+ ++ K C
Sbjct: 130 TILIGIANVLGKFHTL----SRKRHLPEHWDRTPCIFKMMEKWKNQLFKYKNIEKYNCDI 185
Query: 169 ------SAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNI--------MID 214
S K K +Y+ D ++ I FCHNDLQ NI +ID
Sbjct: 186 HKYIKESDKFIKFMKVYSKSDNLA----------NTIVFCHNDLQENNIINTNKCLRLID 235
Query: 215 EETSSITIIVS 225
E S + +
Sbjct: 236 FEYSGFNFLAT 246
>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
Revealed By A Rationally Designed Inhibitor
Length = 383
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28 WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
W + +D + VI +G ++N ++Q + P L R VL+R+YG E
Sbjct: 29 WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 86
Query: 75 GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
G E +++E + E M + + GP+L G F GR+E+FI +R L ++
Sbjct: 87 GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 145
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
P IS +A KM FH +KMP ++ L+ + K++ ++++ +
Sbjct: 146 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 205
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
Y L E+ L L + + FCHND Q GNI++ E E S ++ F + N++
Sbjct: 206 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 265
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28 WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
W + +D + VI +G ++N ++Q + P L R VL+R+YG E
Sbjct: 47 WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 104
Query: 75 GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
G E +++E + E M + + GP+L G F GR+E+FI +R L ++
Sbjct: 105 GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 163
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
P IS +A KM FH +KMP ++ L+ + K++ ++++ +
Sbjct: 164 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 223
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
Y L E+ L L + + FCHND Q GNI++ E E S ++ F + N++
Sbjct: 224 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 283
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 28 WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYG----------E 74
W + +D + VI +G ++N ++Q + P L R VL+R+YG E
Sbjct: 48 WRGLREDEFHISVI--RGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKE 105
Query: 75 GVEVFFNRDDEIRTFECM----------SSQGQGPRLLGRFGDGRVEEFIHARTLSAADI 124
G E +++E + E M + + GP+L G F GR+E+FI +R L ++
Sbjct: 106 GSEQA-QKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEEL 164
Query: 125 RDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAKSFCSAKDAK-----EFCL 178
P IS +A KM FH +KMP ++ L+ + K++ ++++ +
Sbjct: 165 SLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLS 224
Query: 179 YTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDE--ETSSITIIVSFTFLQNMLNFK 236
Y L E+ L L + + FCHND Q GNI++ E E S ++ F + N++
Sbjct: 225 YNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR 284
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 33 DDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECM 92
++ D+L+ + G +TN I K+ L+R+YG + NR+ E + +
Sbjct: 106 NEVDSLEFQIINGGITN----ILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCIL 161
Query: 93 SSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKM------- 145
++ ++ F +GR+EEF+ LS DI++PK +L+A ++ HD+K+
Sbjct: 162 YNKNIAKKIYVFFTNGRIEEFMDGYALSREDIKNPKFQKLIAKNLKLLHDIKLNENLYKE 221
Query: 146 -------PGPRKALLWDRLRKWVSV----AKSFCSAKDAKEFCLY-----TLKDEISMLE 189
PG R + LW+ + K+ + K CS DAK L L+D I +E
Sbjct: 222 LQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICSF-DAKANILKLIDFDVLRDSIVEVE 280
Query: 190 KELPNDHQEIGFCHNDLQYGNIM 212
++ I CH DL NI+
Sbjct: 281 SLCKRENSPIVLCHCDLLSSNII 303
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 12 SSPEELKKVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIA----WPAKNNGLARNV 67
+ P +KK+ DW + D + V + +TN++++++ + R+V
Sbjct: 4 TDPLYIKKICLEKVHDWSRC--NEDDVCVNQILSGLTNQLFEVSIKEDTAIEYRITRRHV 61
Query: 68 LVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDP 127
L RIYG+ V+ +N E ++ MS P LL F GR+EE+++ LS D+++
Sbjct: 62 LFRIYGKDVDALYNPLSEFEVYKTMSKYRIAPLLLNTFDGGRIEEWLYGDPLSIDDLKNK 121
Query: 128 KISELVAAKMREFHDL-----------KMPGPRKALLWDRLRKWVSVAKSFCSAK-DAKE 175
I +A + +FH L K P K + DR R VS K+ D +
Sbjct: 122 SILVGIANVLGKFHTLSRKRHLPEHWDKTPCVFKMM--DRWRLAVSNYKNLDKVTLDINK 179
Query: 176 FCLYTLKD-EISMLEKELPNDHQEIGFCHNDLQYGNIM 212
+ + K + + ++ N +I FCHNDLQ NIM
Sbjct: 180 YIQESHKFLKFIKIYTQIENIANDIVFCHNDLQENNIM 217
>pdb|1NW1|A Chain A, Crystal Structure Of Choline Kinase
pdb|1NW1|B Chain B, Crystal Structure Of Choline Kinase
Length = 429
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 30/204 (14%)
Query: 36 DALQVIPLKGAMTNEVY-----QIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIR--- 87
+ L++ +KG M+N ++ ++ P +N VL+R+Y FN + E
Sbjct: 74 EHLRISRIKGGMSNMLFLCRLSEVYPPIRNE--PNKVLLRVY-------FNPETESHLVA 124
Query: 88 ---TFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLK 144
F +S + GP+L G F GR+EE+I +R LS +I +S +A ++ + H L+
Sbjct: 125 ESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLE 184
Query: 145 MPGPRKA-LLWDRLRKWVSVAKSFCSAK---DAKEFCLYT------LKDEISMLEKELPN 194
+P ++ L + L++W+ A+ D E C + L E+ L +
Sbjct: 185 VPIWKEPDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISL 244
Query: 195 DHQEIGFCHNDLQYGNIMIDEETS 218
+ FCHNDLQ GNI++ + +S
Sbjct: 245 SKSPVTFCHNDLQEGNILLPKASS 268
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 28 WGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARN---VLVRIYGEGVEVFFNRDD 84
W ++ + ++V + +TN+++ ++ ++ L+ +L RIYG+ V F++
Sbjct: 65 WKEI--NESYIEVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKV 122
Query: 85 EIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFH--- 141
E+ F +S+ P ++ F +GR+EEFI L+ ++ I VA M H
Sbjct: 123 ELDVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIIN 182
Query: 142 ----DLKMPGPRKALLWDRLRKWVSVAKSFCSAKDAK-EFCLYT-LKDEISMLEK----- 190
D ++ +L+ R+ W AK S + + + LY+ + +EI LE+
Sbjct: 183 SKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGG 242
Query: 191 -----------ELPNDHQEIGFCHNDLQYGNI--------MIDEETSSIT 221
+L + + F HNDLQ N+ MID E S+I
Sbjct: 243 EKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNNIRMIDYEYSAIN 292
>pdb|3I0O|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
Aph(9)-Ia, In Complex With Adp And Spectinomcyin
pdb|3I0Q|A Chain A, Crystal Structure Of The Amp-Bound Complex Of
Spectinomycin Phosphotransferase, Aph(9)-Ia
pdb|3I1A|A Chain A, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
Aph(9)-Ia
pdb|3I1A|B Chain B, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
Aph(9)-Ia
pdb|3Q2M|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
Aph(9)-Ia, Protein Kinase Inhibitor Cki-7 Complex
Length = 339
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 159 KWVSVAKSFCSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFCHNDLQYGNIMIDEETS 218
K + KSF + A ++ L D L K++ D + CH+D+ GN+++ E
Sbjct: 169 KLTAAFKSFFNQNSA---AIHRLVDTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNE-E 224
Query: 219 SITII 223
SI II
Sbjct: 225 SIYII 229
>pdb|1BC0|A Chain A, Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1BC1|A Chain A, Recombinant Rat Annexin V, Quadruple Mutant (T72k, S144k,
S228k, S303k)
Length = 319
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1BC3|A Chain A, Recombinant Rat Annexin V, Triple Mutant (T72k, S144k,
S228k)
Length = 319
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|2RAN|A Chain A, Rat Annexin V Crystal Structure: Ca2+-Induced
Conformational Changes
Length = 316
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 108 TEIIASRTPEELRAIKQAYEEEYGSNLED 136
>pdb|2H0M|A Chain A, Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1BCY|A Chain A, Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1BCW|A Chain A, Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1N41|A Chain A, Crystal Structure Of Annexin V K27e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|2IE6|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Xenon
pdb|2IE7|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Nitrous Oxide
Length = 318
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 108 TEIIASRTPEELRAIKQAYEEEYGSNLED 136
>pdb|1A8A|A Chain A, Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B|A Chain A, Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 319
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1BCZ|A Chain A, Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1N44|A Chain A, Crystal Structure Of Annexin V R23e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|1N42|A Chain A, Crystal Structure Of Annexin V R149e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 109 TEIIASRTPEELRAIKQAYEEEYGSNLED 137
>pdb|2H0L|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 108 TEIIASRTPEELRAIKQAYEEEYGSNLED 136
>pdb|2H0K|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
pdb|2H0K|B Chain B, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q+ ++G ++D
Sbjct: 108 TEIIASRTPEELRAIKQAYEEEYGSNLED 136
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 51 VYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDD 84
VY +WPA GL V + GE ++ N DD
Sbjct: 168 VYSCSWPAYQGGLPPKVNYTLLGEICNLWRNYDD 201
>pdb|1ANW|A Chain A, The Effect Of Metal Binding On The Structure Of Annexin V
And Implications For Membrane Binding
pdb|1ANW|B Chain B, The Effect Of Metal Binding On The Structure Of Annexin V
And Implications For Membrane Binding
pdb|1ANX|A Chain A, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
pdb|1ANX|B Chain B, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
pdb|1ANX|C Chain C, The Crystal Structure Of A New High-Calcium Form Of
Annexin V
Length = 319
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 110 TEIIASRTPEELRAIKQVYEEEYGSSLED 138
>pdb|1AVH|A Chain A, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
pdb|1AVH|B Chain B, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
pdb|1HAK|B Chain B, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1HAK|A Chain A, Crystal Structure Of Recombinant Human Placental Annexin V
Complexed With K-201 As A Calcium Channel Activity
Inhibitor
pdb|1AVR|A Chain A, Crystal And Molecular Structure Of Human Annexin V After
Refinement. Implications For Structure, Membrane Binding
And Ion Channel Formation Of The Annexin Family Of
Proteins
Length = 320
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 111 TEIIASRTPEELRAIKQVYEEEYGSSLED 139
>pdb|1HVE|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
pdb|1HVG|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 110 TEIIASRTPEELRAIKQVYEEEYGSSLED 138
>pdb|1HVF|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 110 TEIIASRTPEELRAIKQVYEEEYGSSLED 138
>pdb|1HVD|A Chain A, Structural And Electrophysiological Analysis Of Annexin V
Mutants. Mutagenesis Of Human Annexin V, An In Vitro
Voltage-Gated Calcium Channel, Provides Information
About The Structural Features Of The Ion Pathway, The
Voltage Sensor And The Ion Selectivity Filter
Length = 319
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 110 TEIIASRTPEELRAIKQVYEEEYGSSLED 138
>pdb|2XO2|A Chain A, Human Annexin V With Incorporated Methionine Analogue
Azidohomoalanine
pdb|2XO3|A Chain A, Human Annexin V With Incorporated Methionine Analogue
Homopropargylglycine
Length = 320
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 6 TELLPSSSPEELKKVLQSVASDWGDVIDD 34
TE++ S +PEEL+ + Q ++G ++D
Sbjct: 111 TEIIASRTPEELRAIKQVYEEEYGSSLED 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,617,147
Number of Sequences: 62578
Number of extensions: 298816
Number of successful extensions: 967
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 36
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)