BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024453
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UZ40|DP2L_HALMA DNA polymerase II large subunit OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=polC
PE=3 SV=1
Length = 1395
Score = 34.7 bits (78), Expect = 0.77, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 63 LGEHDNKIEDAID---RLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEE 119
LG ++K++ ++ +LR + S+++ERI P +IGN A C E
Sbjct: 1262 LGSMEDKMDAQLEISRKLRAVVESDVAERIIEYHFLPDLIGNLRAF-SRQEVRCLDCGES 1320
Query: 120 EVRSAHTNFCGE-----NITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSI 171
R+ T C E N+T V+ ++ + AD AR + L++ ER I
Sbjct: 1321 FRRAPLTGDCRECGGRVNLTVHEGSVNKYIDTAIRVADEFGARDYTKQRLKILERKI 1377
>sp|Q18ER3|DP2L_HALWD DNA polymerase II large subunit OS=Haloquadratum walsbyi (strain DSM
16790) GN=polC PE=3 SV=1
Length = 2289
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 57 EVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQM 116
+ + S++ + D ++E A +LR + ++++ER+ P +IGN A T C
Sbjct: 2154 KTLDSMMDKMDAQLELA-RKLRAVDETDVAERVIEYHFLPDLIGNLRAF-SRQQTRCLDC 2211
Query: 117 SEEEVRSAHTNFCGE-----NITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSI 171
E R T C E N+T V+ ++ + A+ D R + LEV ERS+
Sbjct: 2212 GESYRRMPLTGECRECGGRVNLTVHEGSVNKYMDTAIHIAEEFDCREYTKQRLEVLERSL 2271
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 49 QMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
++F D+DP+VV +L E D K+E+A+D L LS
Sbjct: 56 EIFSDLDPDVVYLMLSECDFKVENAMDCLLELS 88
>sp|Q6BRB3|DEF1_DEBHA RNA polymerase II degradation factor 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEF1 PE=3 SV=2
Length = 742
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 47 LLQMFPDVDPEVVKSVLGEHDNKIEDAID 75
LL+MFPD + + + S+L EH+N +E ID
Sbjct: 35 LLEMFPDWESDDLSSLLAEHNNILEVVID 63
>sp|B2HHM7|PANB_MYCMM 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mycobacterium
marinum (strain ATCC BAA-535 / M) GN=panB PE=3 SV=1
Length = 297
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 85 ISERIKSQGLEPTIIGNFSAVP-GESATSCSQMSEEEVRSAHTNFCGENITDGSKWVDLF 143
+SE+I Q E + G S VP GES+ S + +VR+ H + +G KW L
Sbjct: 1 MSEQISEQS-EQNVYGASSPVPAGESSPSAASAPRTKVRTHHLQ---KWKAEGHKWAMLT 56
Query: 144 VHEMMSAADLDDA 156
V++ +A DDA
Sbjct: 57 VYDYSTARAFDDA 69
>sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1A OS=Danio
rerio GN=smarcad1a PE=2 SV=1
Length = 972
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNIS 86
PD++ EV++ +L EHD E+A+ L V S ++ S
Sbjct: 188 PDIEKEVLRDILKEHDWDYENALGSLLVFSSTDTS 222
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1B OS=Danio
rerio GN=smarcad1b PE=3 SV=1
Length = 954
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 13 EEICGSSSPTSAKRS-RCSTFGSLVRSG--SDDPVSFLLQM---FPDVDPEVVKSVLGEH 66
+++CGSS + +++ R S G S D L ++ FP ++ ++ VL EH
Sbjct: 144 QQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEH 203
Query: 67 DNKIEDAIDRLRVLS 81
D I+DA++ LR+ S
Sbjct: 204 DWLIDDALETLRMFS 218
>sp|Q6DFR0|TOLIP_XENTR Toll-interacting protein OS=Xenopus tropicalis GN=tollip PE=2 SV=1
Length = 269
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77
+ F+ MFP +DPEV++SVL + A++ L
Sbjct: 229 IKFIKDMFPTMDPEVIRSVLEAQGGNRDAAVNSL 262
>sp|Q6D7R1|PUR7_ERWCT Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=purC PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 141 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 196
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 197 NQILKKAVSI 206
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
>sp|C6DBS2|PUR7_PECCP Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Pectobacterium carotovorum subsp. carotovorum (strain
PC1) GN=purC PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 141 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 196
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 197 NQILKKAVSI 206
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
>sp|Q8D233|RPOB_WIGBR DNA-directed RNA polymerase subunit beta OS=Wigglesworthia
glossinidia brevipalpis GN=rpoB PE=3 SV=1
Length = 1342
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 164 LEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKE--V 221
+E+F R + K + E+E+ +KE + + + +I K ++ IQ E L++ E +
Sbjct: 930 VEIFTRDGVKKDKRALEIEYMQIKEAKKDIYEELEIFKSSLKIQIEYFLKENNIEYDSLS 989
Query: 222 ELLKLVISQYQDQARNL-----ELRNYALKL 247
ELLK I + NL EL N L+L
Sbjct: 990 ELLKGNIKNLIFKNNNLNNIFEELINKFLRL 1020
>sp|Q5FWR0|SMRCD_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Xenopus
tropicalis GN=smarcad1 PE=2 SV=1
Length = 1003
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
V L + FPD+D E ++ VL EHD +A++ L++ +
Sbjct: 226 VKKLQRHFPDLDKEELREVLQEHDWSFHEALEALKLFA 263
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 137 SKWVDLFVHEM----------MSAADLDDARGRAARILEVFERSIITNSKASKELEHASL 186
+KW D+ V +M M + D + A L+ +++IT+ +A EL++ ++
Sbjct: 1295 TKWKDINVEQMDIDCKKFAKDMRSLDKEMKTWDAFVGLDNTVKNVITSLRAVSELQNPAI 1354
Query: 187 KE-HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238
+E H Q L+ Q+ + ++ +LL+L + Y+D+ RN+
Sbjct: 1355 RERHWQQLMQATQV-----------KFKMSEETTLADLLQLNLHSYEDEVRNI 1396
>sp|A0PNG6|PANB_MYCUA 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mycobacterium
ulcerans (strain Agy99) GN=panB PE=3 SV=1
Length = 297
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 85 ISERIKSQGLEPTIIGNFSAVP-GESATSCSQMSEEEVRSAHTNFCGENITDGSKWVDLF 143
+SE+I Q E + G VP GES+ S + +VR+ H + +G KW L
Sbjct: 1 MSEQISEQS-EQNVYGACPPVPAGESSPSAASAPRTKVRTHHLQ---KWKAEGHKWAMLT 56
Query: 144 VHEMMSAADLDDA 156
V++ +A DDA
Sbjct: 57 VYDYSTARAFDDA 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,111,117
Number of Sequences: 539616
Number of extensions: 3529779
Number of successful extensions: 16550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 208
Number of HSP's that attempted gapping in prelim test: 16388
Number of HSP's gapped (non-prelim): 378
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)