Query 024453
Match_columns 267
No_of_seqs 66 out of 68
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 99.0 7.5E-09 1.6E-13 105.5 13.6 121 134-254 307-431 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.1E-06 2.5E-11 59.7 4.0 38 43-80 4-41 (42)
3 smart00546 CUE Domain that may 98.2 1.7E-06 3.6E-11 59.0 4.3 38 42-79 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.4 0.00026 5.7E-09 49.0 4.1 35 43-77 4-38 (39)
5 COG3074 Uncharacterized protei 96.3 0.061 1.3E-06 42.0 9.7 67 162-238 4-72 (79)
6 PRK15422 septal ring assembly 96.2 0.075 1.6E-06 42.0 9.7 67 162-238 4-72 (79)
7 PF00627 UBA: UBA/TS-N domain; 95.6 0.022 4.8E-07 37.6 4.0 34 42-77 4-37 (37)
8 PF06005 DUF904: Protein of un 95.1 0.31 6.7E-06 37.5 9.4 60 162-238 4-65 (72)
9 PF15619 Lebercilin: Ciliary p 94.7 0.63 1.4E-05 41.7 11.8 72 179-250 17-99 (194)
10 PF10205 KLRAQ: Predicted coil 94.5 0.34 7.4E-06 39.9 8.8 54 190-253 7-60 (102)
11 PF09744 Jnk-SapK_ap_N: JNK_SA 94.5 0.87 1.9E-05 39.8 11.8 77 161-240 32-110 (158)
12 smart00165 UBA Ubiquitin assoc 92.4 0.27 5.9E-06 31.9 4.1 33 43-77 4-36 (37)
13 PRK10884 SH3 domain-containing 92.1 2.8 6E-05 38.0 11.6 70 179-250 98-170 (206)
14 cd00194 UBA Ubiquitin Associat 92.0 0.34 7.3E-06 31.5 4.2 34 43-78 4-37 (38)
15 PHA02047 phage lambda Rz1-like 91.1 1.5 3.2E-05 36.2 7.8 53 201-256 26-78 (101)
16 PF02403 Seryl_tRNA_N: Seryl-t 90.7 4.3 9.3E-05 32.0 10.1 83 164-246 11-101 (108)
17 PF15058 Speriolin_N: Sperioli 90.6 0.24 5.2E-06 45.0 3.1 22 181-203 19-40 (200)
18 PRK09413 IS2 repressor TnpA; R 89.6 0.56 1.2E-05 38.2 4.3 32 179-210 76-107 (121)
19 PF13747 DUF4164: Domain of un 89.0 10 0.00022 30.1 11.6 83 150-237 3-85 (89)
20 PF05010 TACC: Transforming ac 88.7 13 0.00028 33.9 12.8 90 161-250 43-142 (207)
21 PF04111 APG6: Autophagy prote 87.9 11 0.00025 35.8 12.5 30 213-242 107-136 (314)
22 TIGR03495 phage_LysB phage lys 86.0 9.9 0.00022 32.7 9.9 68 179-247 28-96 (135)
23 KOG1853 LIS1-interacting prote 85.8 6.7 0.00014 37.7 9.5 66 182-247 53-126 (333)
24 KOG4588 Predicted ubiquitin-co 85.5 1.2 2.6E-05 41.9 4.4 32 50-81 1-32 (267)
25 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.6 22 0.00047 29.5 11.6 68 182-249 60-128 (132)
26 PF11559 ADIP: Afadin- and alp 84.0 24 0.00052 29.5 13.0 98 153-250 43-150 (151)
27 TIGR03752 conj_TIGR03752 integ 83.8 11 0.00024 38.4 10.6 59 179-239 78-136 (472)
28 PF13851 GAS: Growth-arrest sp 83.6 16 0.00034 32.8 10.5 68 179-253 53-120 (201)
29 PF15058 Speriolin_N: Sperioli 83.1 2.9 6.3E-05 38.2 5.7 37 183-230 7-43 (200)
30 PF10473 CENP-F_leu_zip: Leuci 83.0 30 0.00065 29.9 11.8 65 179-253 50-114 (140)
31 PF07058 Myosin_HC-like: Myosi 82.1 13 0.00028 36.4 9.9 70 179-253 5-86 (351)
32 PRK03918 chromosome segregatio 81.3 71 0.0015 33.5 15.7 31 143-173 150-180 (880)
33 PF10226 DUF2216: Uncharacteri 81.3 9.1 0.0002 34.9 8.1 63 182-245 56-127 (195)
34 PLN02678 seryl-tRNA synthetase 80.9 19 0.00042 36.2 11.1 79 179-266 38-116 (448)
35 PF08614 ATG16: Autophagy prot 80.0 20 0.00043 31.5 9.7 76 161-246 101-178 (194)
36 PF06156 DUF972: Protein of un 79.4 11 0.00023 31.1 7.3 23 179-201 20-42 (107)
37 PF10828 DUF2570: Protein of u 79.3 21 0.00045 28.9 8.9 61 179-242 30-90 (110)
38 PF14555 UBA_4: UBA-like domai 79.2 2.8 6.2E-05 28.5 3.3 35 44-79 4-38 (43)
39 KOG0971 Microtubule-associated 77.1 77 0.0017 35.5 14.6 70 179-248 330-439 (1243)
40 PRK11637 AmiB activator; Provi 77.1 76 0.0016 31.0 15.9 9 147-155 145-153 (428)
41 COG4797 Predicted regulatory d 76.8 1.8 3.8E-05 41.1 2.3 24 47-70 4-28 (268)
42 KOG4005 Transcription factor X 76.0 20 0.00044 34.1 8.9 50 179-228 95-148 (292)
43 PRK05431 seryl-tRNA synthetase 75.8 36 0.00079 33.7 11.2 69 179-247 33-101 (425)
44 PRK13169 DNA replication intia 75.6 15 0.00032 30.6 7.1 24 179-202 20-43 (110)
45 PRK13182 racA polar chromosome 75.1 43 0.00093 29.7 10.4 94 136-232 42-145 (175)
46 PRK13922 rod shape-determining 74.8 46 0.001 30.4 10.9 38 192-229 73-110 (276)
47 KOG0241 Kinesin-like protein [ 74.8 17 0.00036 40.8 9.0 75 185-265 368-443 (1714)
48 KOG0995 Centromere-associated 74.2 40 0.00086 35.4 11.2 64 179-242 299-362 (581)
49 PRK09039 hypothetical protein; 73.4 50 0.0011 31.8 11.2 61 152-212 110-175 (343)
50 PRK13729 conjugal transfer pil 72.8 21 0.00045 36.6 8.7 21 179-199 74-94 (475)
51 TIGR03752 conj_TIGR03752 integ 72.1 46 0.001 34.1 11.0 55 179-236 85-140 (472)
52 PF07888 CALCOCO1: Calcium bin 71.8 40 0.00086 35.1 10.6 68 183-250 194-265 (546)
53 PF11488 Lge1: Transcriptional 71.4 18 0.0004 27.8 6.4 48 207-254 25-72 (80)
54 PF11932 DUF3450: Protein of u 71.0 82 0.0018 28.6 11.7 44 179-222 54-97 (251)
55 PF11577 NEMO: NF-kappa-B esse 69.8 47 0.001 25.5 8.2 57 186-242 4-68 (68)
56 PF02954 HTH_8: Bacterial regu 68.6 3.9 8.5E-05 27.6 1.9 25 54-78 5-29 (42)
57 KOG0976 Rho/Rac1-interacting s 68.6 74 0.0016 35.3 12.0 87 162-248 298-408 (1265)
58 PRK02224 chromosome segregatio 68.3 1.6E+02 0.0036 31.0 15.7 62 179-240 211-272 (880)
59 PF05300 DUF737: Protein of un 67.9 42 0.00092 30.3 8.8 27 214-243 139-165 (187)
60 PF13097 CENP-U: CENP-A nucleo 67.8 29 0.00064 31.2 7.7 42 162-203 108-157 (175)
61 TIGR02449 conserved hypothetic 66.9 55 0.0012 25.0 8.3 23 179-201 19-41 (65)
62 TIGR00219 mreC rod shape-deter 66.7 16 0.00035 34.3 6.2 38 179-229 71-108 (283)
63 PRK10884 SH3 domain-containing 66.7 61 0.0013 29.4 9.7 27 214-240 141-167 (206)
64 COG3206 GumC Uncharacterized p 64.9 1E+02 0.0023 30.2 11.6 79 163-241 321-402 (458)
65 KOG0612 Rho-associated, coiled 64.7 1.2E+02 0.0026 34.7 13.0 74 179-253 463-542 (1317)
66 PF07106 TBPIP: Tat binding pr 64.4 48 0.001 28.2 8.2 60 180-240 78-137 (169)
67 PF01166 TSC22: TSC-22/dip/bun 64.2 13 0.00029 28.1 4.1 30 219-248 14-43 (59)
68 PF10234 Cluap1: Clusterin-ass 64.1 1.1E+02 0.0024 29.1 11.2 99 134-240 131-250 (267)
69 KOG4360 Uncharacterized coiled 63.9 1.2E+02 0.0025 31.9 12.0 108 153-265 207-324 (596)
70 PRK15354 type III secretion sy 63.7 1.3E+02 0.0028 28.2 11.1 56 134-190 20-83 (224)
71 TIGR01837 PHA_granule_1 poly(h 62.8 23 0.0005 29.2 5.8 21 219-239 96-116 (118)
72 KOG0804 Cytoplasmic Zn-finger 62.8 96 0.0021 32.0 11.0 83 161-250 370-452 (493)
73 TIGR00414 serS seryl-tRNA synt 62.7 55 0.0012 32.3 9.3 78 179-266 35-114 (418)
74 CHL00098 tsf elongation factor 62.4 5.7 0.00012 36.0 2.2 43 44-87 5-47 (200)
75 PLN02320 seryl-tRNA synthetase 62.4 1.1E+02 0.0024 31.5 11.6 77 180-266 99-175 (502)
76 PF06810 Phage_GP20: Phage min 61.8 1.1E+02 0.0023 26.5 10.3 67 179-253 25-95 (155)
77 PF08317 Spc7: Spc7 kinetochor 61.6 1.5E+02 0.0032 28.2 12.4 58 179-239 207-264 (325)
78 KOG4603 TBP-1 interacting prot 61.6 74 0.0016 29.1 9.0 25 215-239 119-143 (201)
79 PRK06369 nac nascent polypepti 60.1 11 0.00023 31.8 3.3 27 53-79 88-114 (115)
80 TIGR02894 DNA_bind_RsfA transc 59.9 37 0.00081 30.2 6.8 22 179-200 102-123 (161)
81 TIGR00116 tsf translation elon 59.9 6.5 0.00014 37.5 2.3 30 58-87 21-50 (290)
82 PF05911 DUF869: Plant protein 59.8 1.6E+02 0.0034 32.1 12.6 69 179-250 90-158 (769)
83 PF10211 Ax_dynein_light: Axon 59.6 1.3E+02 0.0028 26.7 13.7 67 183-251 122-188 (189)
84 PF12325 TMF_TATA_bd: TATA ele 59.5 1.1E+02 0.0023 25.8 11.5 19 182-200 31-49 (120)
85 PHA02562 46 endonuclease subun 58.9 1.7E+02 0.0036 29.0 11.9 66 179-244 179-245 (562)
86 PF10506 MCC-bdg_PDZ: PDZ doma 58.2 83 0.0018 24.1 8.7 60 185-245 2-65 (67)
87 PF07888 CALCOCO1: Calcium bin 58.2 2.4E+02 0.0053 29.5 13.5 19 10-30 7-25 (546)
88 PRK09377 tsf elongation factor 57.9 7.3 0.00016 37.1 2.3 42 44-86 9-50 (290)
89 KOG4343 bZIP transcription fac 57.9 15 0.00032 38.4 4.5 49 163-211 279-332 (655)
90 PRK12332 tsf elongation factor 57.8 7.6 0.00017 35.0 2.2 44 43-87 7-50 (198)
91 PF15070 GOLGA2L5: Putative go 57.4 1.9E+02 0.0041 30.6 12.5 37 179-215 92-128 (617)
92 PF07334 IFP_35_N: Interferon- 57.0 19 0.0004 28.4 4.0 28 179-206 5-32 (76)
93 TIGR00264 alpha-NAC-related pr 56.8 13 0.00027 31.5 3.2 26 53-78 90-115 (116)
94 PF09789 DUF2353: Uncharacteri 56.8 33 0.00072 33.4 6.5 29 179-207 84-112 (319)
95 PF09744 Jnk-SapK_ap_N: JNK_SA 56.2 60 0.0013 28.4 7.4 61 179-239 87-148 (158)
96 PF10046 BLOC1_2: Biogenesis o 56.2 1E+02 0.0022 24.5 13.2 51 200-250 40-90 (99)
97 PF13118 DUF3972: Protein of u 55.8 70 0.0015 27.4 7.5 20 186-205 83-102 (126)
98 PF13851 GAS: Growth-arrest sp 55.5 1.6E+02 0.0034 26.5 13.7 61 179-239 67-127 (201)
99 PRK13922 rod shape-determining 55.2 90 0.002 28.5 8.8 22 179-200 74-95 (276)
100 PF07445 priB_priC: Primosomal 54.9 21 0.00045 31.3 4.4 85 161-252 50-135 (173)
101 PRK11637 AmiB activator; Provi 54.7 2.2E+02 0.0047 27.9 12.5 22 218-239 232-253 (428)
102 KOG0977 Nuclear envelope prote 54.5 38 0.00082 35.3 6.8 46 205-254 32-77 (546)
103 TIGR00219 mreC rod shape-deter 54.0 70 0.0015 30.0 8.0 12 238-249 96-107 (283)
104 PRK14872 rod shape-determining 53.7 31 0.00068 33.7 5.8 15 179-193 62-76 (337)
105 KOG0977 Nuclear envelope prote 53.5 2.3E+02 0.005 29.7 12.2 39 215-253 151-189 (546)
106 KOG0978 E3 ubiquitin ligase in 53.3 3.3E+02 0.0071 29.5 13.7 81 183-263 50-134 (698)
107 PF06005 DUF904: Protein of un 53.0 76 0.0016 24.4 6.7 23 179-201 30-52 (72)
108 PRK13729 conjugal transfer pil 52.7 71 0.0015 32.8 8.3 31 219-249 90-120 (475)
109 PF10267 Tmemb_cc2: Predicted 52.2 95 0.0021 31.1 9.0 38 199-242 48-85 (395)
110 COG4026 Uncharacterized protei 51.1 1.7E+02 0.0037 27.9 9.9 68 179-250 133-201 (290)
111 smart00787 Spc7 Spc7 kinetocho 50.9 1.2E+02 0.0027 29.1 9.3 57 181-240 204-260 (312)
112 PRK11091 aerobic respiration c 50.2 2.8E+02 0.0061 28.5 12.3 57 139-202 68-124 (779)
113 COG2433 Uncharacterized conser 49.9 2.5E+02 0.0055 30.0 11.9 41 200-240 462-502 (652)
114 PF04849 HAP1_N: HAP1 N-termin 49.9 2.1E+02 0.0046 27.9 10.7 89 150-241 205-305 (306)
115 COG5296 Transcription factor i 49.8 28 0.00061 35.4 4.9 53 184-244 350-402 (521)
116 KOG3119 Basic region leucine z 49.7 53 0.0011 30.7 6.5 26 179-204 227-252 (269)
117 PF08614 ATG16: Autophagy prot 49.2 50 0.0011 29.0 5.9 61 179-242 86-146 (194)
118 PF14362 DUF4407: Domain of un 49.2 1.3E+02 0.0029 27.7 9.0 22 224-245 187-208 (301)
119 cd07429 Cby_like Chibby, a nuc 49.1 21 0.00045 29.8 3.3 18 179-196 84-101 (108)
120 KOG4286 Dystrophin-like protei 49.0 47 0.001 36.3 6.6 56 199-254 192-248 (966)
121 TIGR01541 tape_meas_lam_C phag 48.9 2.6E+02 0.0057 27.1 11.7 24 218-241 82-105 (332)
122 PF06156 DUF972: Protein of un 48.2 78 0.0017 26.0 6.5 40 215-254 18-57 (107)
123 PF09726 Macoilin: Transmembra 48.1 2.3E+02 0.005 30.3 11.5 33 216-248 549-581 (697)
124 PF05597 Phasin: Poly(hydroxya 47.5 1.3E+02 0.0027 25.7 7.9 44 153-196 74-124 (132)
125 PRK11459 multidrug resistance 47.1 2.9E+02 0.0063 27.1 13.6 105 151-255 368-474 (478)
126 TIGR03319 YmdA_YtgF conserved 46.9 3.4E+02 0.0073 27.9 14.8 14 153-166 27-40 (514)
127 smart00804 TAP_C C-terminal do 46.6 25 0.00054 26.4 3.1 33 50-82 21-53 (63)
128 COG2433 Uncharacterized conser 46.5 3.1E+02 0.0068 29.4 11.9 70 179-251 420-492 (652)
129 PF01166 TSC22: TSC-22/dip/bun 46.5 34 0.00075 25.9 3.8 23 180-202 13-42 (59)
130 PF09728 Taxilin: Myosin-like 46.0 2.8E+02 0.006 26.6 11.0 59 179-240 242-300 (309)
131 TIGR02894 DNA_bind_RsfA transc 45.7 2.2E+02 0.0048 25.4 10.5 27 219-245 104-130 (161)
132 cd07685 F-BAR_Fes The F-BAR (F 45.4 2.7E+02 0.0058 26.3 11.5 53 187-240 97-149 (237)
133 PF12958 DUF3847: Protein of u 45.4 41 0.00088 27.0 4.3 33 213-245 2-34 (86)
134 COG1308 EGD2 Transcription fac 45.3 24 0.00052 30.1 3.1 23 56-78 99-121 (122)
135 PF04111 APG6: Autophagy prote 45.1 2.8E+02 0.0062 26.5 11.9 38 219-256 99-136 (314)
136 KOG4571 Activating transcripti 44.8 1.2E+02 0.0026 29.4 8.1 40 182-231 249-288 (294)
137 KOG2129 Uncharacterized conser 44.7 1.4E+02 0.0031 30.7 8.9 14 220-233 144-157 (552)
138 PF07139 DUF1387: Protein of u 44.3 2.3E+02 0.005 27.6 9.9 47 166-215 154-202 (302)
139 PF06364 DUF1068: Protein of u 44.3 1E+02 0.0022 27.9 7.0 42 187-233 83-124 (176)
140 PF11180 DUF2968: Protein of u 43.5 2.6E+02 0.0057 25.6 13.1 20 158-177 84-103 (192)
141 PF04102 SlyX: SlyX; InterPro 43.2 98 0.0021 23.2 5.9 35 219-253 18-52 (69)
142 PF11544 Spc42p: Spindle pole 43.1 1.7E+02 0.0036 23.2 8.1 54 192-248 2-55 (76)
143 PF09006 Surfac_D-trimer: Lung 43.0 53 0.0011 23.8 4.1 23 185-207 3-25 (46)
144 PF15070 GOLGA2L5: Putative go 43.0 3E+02 0.0065 29.1 11.3 70 183-252 162-242 (617)
145 TIGR00414 serS seryl-tRNA synt 42.9 3.5E+02 0.0075 26.8 12.0 58 179-237 42-101 (418)
146 PF03962 Mnd1: Mnd1 family; I 42.8 2.4E+02 0.0053 25.0 9.5 103 135-252 66-168 (188)
147 PF06637 PV-1: PV-1 protein (P 42.7 3.9E+02 0.0084 27.3 11.8 24 238-262 379-402 (442)
148 KOG0989 Replication factor C, 42.1 21 0.00045 35.2 2.6 55 26-84 177-238 (346)
149 COG1938 Archaeal enzymes of AT 41.7 40 0.00086 31.7 4.3 62 134-196 157-226 (244)
150 PF12128 DUF3584: Protein of u 41.3 4.6E+02 0.01 29.5 13.0 35 217-251 467-501 (1201)
151 PF05055 DUF677: Protein of un 41.2 3.5E+02 0.0076 26.4 13.6 74 179-252 255-328 (336)
152 PHA02562 46 endonuclease subun 41.2 3.7E+02 0.0079 26.6 14.4 97 134-238 147-246 (562)
153 TIGR01069 mutS2 MutS2 family p 41.0 4.8E+02 0.01 28.1 12.7 17 187-203 531-547 (771)
154 PF15463 ECM11: Extracellular 41.0 1E+02 0.0022 26.0 6.3 61 134-195 69-133 (139)
155 PF06632 XRCC4: DNA double-str 40.5 3.7E+02 0.0079 26.4 11.1 49 179-234 156-209 (342)
156 KOG2264 Exostosin EXT1L [Signa 39.9 2.2E+02 0.0048 30.7 9.6 66 157-242 86-151 (907)
157 PF14645 Chibby: Chibby family 39.7 34 0.00074 28.5 3.2 28 179-206 69-96 (116)
158 PF09738 DUF2051: Double stran 39.7 3.6E+02 0.0077 26.1 12.6 80 157-239 83-167 (302)
159 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.8 2.2E+02 0.0049 23.5 14.0 18 219-236 105-122 (132)
160 KOG0161 Myosin class II heavy 38.5 8E+02 0.017 29.8 14.6 83 134-216 1357-1442(1930)
161 KOG0250 DNA repair protein RAD 38.2 4.6E+02 0.01 29.8 12.2 59 179-241 406-465 (1074)
162 PF03943 TAP_C: TAP C-terminal 38.2 13 0.00028 26.6 0.5 31 53-83 12-42 (51)
163 PRK00106 hypothetical protein; 38.0 4.9E+02 0.011 27.1 14.8 12 154-165 49-60 (535)
164 PF02841 GBP_C: Guanylate-bind 37.6 3.4E+02 0.0074 25.2 11.4 24 179-202 202-225 (297)
165 PF10226 DUF2216: Uncharacteri 37.5 2.4E+02 0.0053 25.9 8.5 67 179-246 67-135 (195)
166 PF00170 bZIP_1: bZIP transcri 37.4 1.6E+02 0.0034 21.3 8.4 30 217-246 31-60 (64)
167 PRK10920 putative uroporphyrin 36.7 3.2E+02 0.007 27.3 10.0 18 179-196 65-82 (390)
168 TIGR01834 PHA_synth_III_E poly 36.6 4.2E+02 0.0091 26.0 13.4 98 137-241 207-318 (320)
169 PF03961 DUF342: Protein of un 36.6 2.8E+02 0.0062 27.3 9.6 72 181-252 334-408 (451)
170 PF11180 DUF2968: Protein of u 36.5 3.4E+02 0.0074 24.9 10.8 35 207-241 149-183 (192)
171 PRK04406 hypothetical protein; 36.4 2E+02 0.0043 22.2 7.8 36 219-254 25-60 (75)
172 PF07989 Microtub_assoc: Micro 36.4 2E+02 0.0043 22.2 8.8 23 218-240 49-71 (75)
173 PRK13169 DNA replication intia 36.2 1.5E+02 0.0033 24.6 6.5 38 215-252 18-55 (110)
174 COG1792 MreC Cell shape-determ 36.2 95 0.0021 29.3 6.0 16 213-228 91-106 (284)
175 PF09311 Rab5-bind: Rabaptin-l 36.1 27 0.00059 30.6 2.2 61 179-239 20-84 (181)
176 KOG1071 Mitochondrial translat 35.8 28 0.0006 34.3 2.4 41 41-82 47-87 (340)
177 PF14197 Cep57_CLD_2: Centroso 35.5 2E+02 0.0043 21.9 7.7 23 179-201 3-25 (69)
178 KOG4571 Activating transcripti 35.3 1.3E+02 0.0027 29.3 6.7 32 179-210 260-292 (294)
179 PF10186 Atg14: UV radiation r 34.9 3.3E+02 0.0072 24.3 12.9 26 180-205 83-108 (302)
180 TIGR02231 conserved hypothetic 34.8 4.2E+02 0.0092 26.6 10.6 18 233-250 152-169 (525)
181 PF06034 DUF919: Nucleopolyhed 34.4 1.5E+02 0.0034 22.4 5.7 44 184-229 4-48 (62)
182 PF08172 CASP_C: CASP C termin 34.2 1.3E+02 0.0029 28.0 6.5 48 203-250 83-131 (248)
183 PRK14011 prefoldin subunit alp 34.0 61 0.0013 28.0 4.0 27 213-239 18-44 (144)
184 PF12999 PRKCSH-like: Glucosid 33.9 3.1E+02 0.0068 24.7 8.5 17 223-239 157-173 (176)
185 PRK09458 pspB phage shock prot 33.3 84 0.0018 24.8 4.3 24 217-240 40-63 (75)
186 PRK00846 hypothetical protein; 33.1 2.4E+02 0.0052 22.1 7.4 37 220-256 28-64 (77)
187 KOG3856 Uncharacterized conser 32.8 1E+02 0.0022 26.7 5.0 35 212-246 10-44 (135)
188 PF03961 DUF342: Protein of un 32.8 3E+02 0.0065 27.2 9.1 24 215-238 385-408 (451)
189 PF05384 DegS: Sensor protein 32.3 2.3E+02 0.0049 25.0 7.3 50 204-253 19-68 (159)
190 KOG4643 Uncharacterized coiled 32.1 8E+02 0.017 28.2 12.6 36 190-225 459-494 (1195)
191 PF06818 Fez1: Fez1; InterPro 32.1 4E+02 0.0086 24.6 9.0 71 182-252 32-106 (202)
192 KOG4797 Transcriptional regula 32.1 91 0.002 26.5 4.6 25 179-203 65-96 (123)
193 PRK11166 chemotaxis regulator 32.0 2.9E+02 0.0064 25.5 8.3 48 148-195 43-99 (214)
194 PF13870 DUF4201: Domain of un 31.8 3.3E+02 0.0071 23.3 11.1 70 179-249 47-121 (177)
195 PF14193 DUF4315: Domain of un 31.8 98 0.0021 24.6 4.5 46 204-254 17-62 (83)
196 PF11336 DUF3138: Protein of u 31.4 83 0.0018 32.4 4.9 63 179-241 23-105 (514)
197 KOG3119 Basic region leucine z 31.4 2.9E+02 0.0064 25.8 8.3 36 218-253 221-256 (269)
198 PRK02793 phi X174 lysis protei 31.4 2.4E+02 0.0051 21.5 7.9 37 219-255 22-58 (72)
199 COG0264 Tsf Translation elonga 31.1 35 0.00077 33.0 2.3 29 59-87 23-51 (296)
200 PF09787 Golgin_A5: Golgin sub 31.0 4.8E+02 0.01 26.4 10.3 53 152-204 236-297 (511)
201 PRK00409 recombination and DNA 30.8 7.1E+02 0.015 26.9 12.3 6 51-56 417-422 (782)
202 PRK10803 tol-pal system protei 30.7 3.5E+02 0.0076 25.1 8.7 11 166-176 44-54 (263)
203 PHA02047 phage lambda Rz1-like 30.7 2.1E+02 0.0045 23.8 6.3 32 179-210 32-63 (101)
204 PF09340 NuA4: Histone acetylt 30.7 96 0.0021 24.1 4.3 35 220-254 3-38 (80)
205 TIGR02976 phageshock_pspB phag 30.7 99 0.0021 24.1 4.3 24 217-240 40-63 (75)
206 PF09730 BicD: Microtubule-ass 30.7 2.5E+02 0.0054 30.4 8.5 56 182-247 266-321 (717)
207 KOG2751 Beclin-like protein [S 30.4 3.9E+02 0.0084 27.5 9.4 68 184-251 146-215 (447)
208 PF09006 Surfac_D-trimer: Lung 30.1 84 0.0018 22.7 3.5 18 223-240 3-20 (46)
209 PRK04325 hypothetical protein; 30.1 2.5E+02 0.0055 21.4 7.4 35 219-253 23-57 (74)
210 PF10267 Tmemb_cc2: Predicted 30.1 3.2E+02 0.007 27.4 8.8 48 189-239 270-318 (395)
211 COG4467 Regulator of replicati 30.0 65 0.0014 27.2 3.4 23 179-201 20-42 (114)
212 PF08581 Tup_N: Tup N-terminal 29.9 2.7E+02 0.0059 21.8 8.2 13 227-239 58-70 (79)
213 PF07412 Geminin: Geminin; In 29.9 1.4E+02 0.0029 27.5 5.7 23 179-201 123-145 (200)
214 KOG4083 Head-elevated expressi 29.8 1.4E+02 0.003 27.4 5.6 20 223-242 98-117 (192)
215 TIGR01005 eps_transp_fam exopo 29.6 6.8E+02 0.015 26.2 11.9 16 179-194 314-329 (754)
216 PF01486 K-box: K-box region; 29.3 1.6E+02 0.0035 23.1 5.4 25 179-203 73-97 (100)
217 PF12805 FUSC-like: FUSC-like 28.7 2.9E+02 0.0063 25.3 7.8 73 162-234 180-258 (284)
218 PRK02119 hypothetical protein; 28.7 2.7E+02 0.0058 21.3 7.9 36 219-254 23-58 (73)
219 KOG1937 Uncharacterized conser 28.6 1.9E+02 0.0042 30.0 7.0 72 179-250 415-500 (521)
220 KOG0250 DNA repair protein RAD 28.6 9.3E+02 0.02 27.5 13.1 46 203-248 272-317 (1074)
221 PF15188 CCDC-167: Coiled-coil 28.6 3E+02 0.0064 22.1 6.7 28 216-243 40-67 (85)
222 PF10779 XhlA: Haemolysin XhlA 28.6 2.2E+02 0.0048 21.2 5.8 30 219-248 6-35 (71)
223 PF07544 Med9: RNA polymerase 28.5 1.4E+02 0.0031 23.1 4.9 33 200-235 50-82 (83)
224 PF03980 Nnf1: Nnf1 ; InterPr 28.5 1.9E+02 0.0042 22.9 5.8 37 171-207 70-106 (109)
225 PRK04863 mukB cell division pr 28.4 1E+03 0.022 28.0 14.8 15 200-214 402-416 (1486)
226 PF12718 Tropomyosin_1: Tropom 28.1 3.8E+02 0.0082 22.8 12.8 63 179-241 26-88 (143)
227 PF04380 BMFP: Membrane fusoge 28.0 1.2E+02 0.0026 23.4 4.4 29 212-240 50-78 (79)
228 KOG2273 Membrane coat complex 27.8 6.2E+02 0.013 25.2 12.8 73 179-251 354-435 (503)
229 COG1196 Smc Chromosome segrega 27.7 9E+02 0.02 27.1 15.3 124 137-264 379-520 (1163)
230 PF00170 bZIP_1: bZIP transcri 27.7 2.4E+02 0.0051 20.3 7.2 24 179-202 24-47 (64)
231 COG5185 HEC1 Protein involved 27.6 4.5E+02 0.0098 27.7 9.4 86 144-229 290-385 (622)
232 COG4567 Response regulator con 27.3 55 0.0012 29.6 2.7 25 57-81 145-169 (182)
233 PF10212 TTKRSYEDQ: Predicted 27.3 6.9E+02 0.015 26.2 10.7 46 155-200 406-460 (518)
234 PHA03162 hypothetical protein; 27.1 1E+02 0.0022 26.8 4.1 34 228-261 15-48 (135)
235 PRK09039 hypothetical protein; 27.1 5.8E+02 0.013 24.7 12.7 25 218-242 143-167 (343)
236 TIGR01730 RND_mfp RND family e 26.9 3.3E+02 0.007 24.3 7.6 18 220-237 110-127 (322)
237 PF05769 DUF837: Protein of un 26.8 4.6E+02 0.0099 23.3 10.8 22 214-235 72-93 (181)
238 PF06120 Phage_HK97_TLTM: Tail 26.7 4.5E+02 0.0098 25.5 8.8 85 136-222 57-161 (301)
239 PF04375 HemX: HemX; InterPro 26.7 6E+02 0.013 24.7 9.9 23 218-240 99-121 (372)
240 COG5281 Phage-related minor ta 26.5 4.3E+02 0.0093 29.2 9.5 33 203-238 528-560 (833)
241 PF06810 Phage_GP20: Phage min 26.5 3.4E+02 0.0073 23.5 7.3 51 186-236 18-68 (155)
242 PF09731 Mitofilin: Mitochondr 26.4 6.9E+02 0.015 25.3 15.4 29 224-252 320-349 (582)
243 TIGR01730 RND_mfp RND family e 26.3 4.6E+02 0.0099 23.4 8.4 9 227-235 110-118 (322)
244 PRK13923 putative spore coat p 26.2 4.8E+02 0.01 23.4 10.5 44 162-205 29-79 (170)
245 PF03148 Tektin: Tektin family 26.0 6.3E+02 0.014 24.7 14.6 98 153-250 30-161 (384)
246 PF04003 Utp12: Dip2/Utp12 Fam 25.8 3.1E+02 0.0068 21.1 8.0 54 198-251 54-109 (110)
247 PF04803 Cor1: Cor1/Xlr/Xmr co 25.7 3E+02 0.0065 23.4 6.7 28 218-245 88-115 (130)
248 PHA03162 hypothetical protein; 25.7 3E+02 0.0065 24.0 6.7 25 183-207 15-39 (135)
249 KOG4196 bZIP transcription fac 25.7 4.5E+02 0.0098 22.9 9.2 70 179-249 45-118 (135)
250 PF06667 PspB: Phage shock pro 25.6 1.4E+02 0.003 23.4 4.3 23 218-240 41-63 (75)
251 KOG3647 Predicted coiled-coil 25.6 6.5E+02 0.014 24.7 10.6 38 134-172 74-111 (338)
252 PLN03025 replication factor C 25.5 76 0.0016 29.5 3.4 50 26-79 147-203 (319)
253 KOG4077 Cytochrome c oxidase, 25.5 66 0.0014 28.3 2.8 26 55-80 83-110 (149)
254 KOG0447 Dynamin-like GTP bindi 25.5 3.1E+02 0.0068 29.7 8.0 65 159-229 203-268 (980)
255 PRK10929 putative mechanosensi 25.4 6.5E+02 0.014 28.7 10.8 20 235-254 260-279 (1109)
256 KOG4378 Nuclear protein COP1 [ 25.4 1.9E+02 0.0041 30.6 6.3 20 181-200 650-669 (673)
257 PRK10361 DNA recombination pro 25.4 7.7E+02 0.017 25.5 11.2 12 185-196 64-75 (475)
258 COG4026 Uncharacterized protei 25.2 2.5E+02 0.0054 26.9 6.6 61 181-251 128-188 (290)
259 KOG0978 E3 ubiquitin ligase in 24.9 9.2E+02 0.02 26.2 11.8 39 179-217 494-532 (698)
260 PF13870 DUF4201: Domain of un 24.9 4.4E+02 0.0096 22.5 10.1 30 212-241 145-174 (177)
261 PRK14127 cell division protein 24.8 88 0.0019 26.0 3.3 20 219-238 51-70 (109)
262 PRK12704 phosphodiesterase; Pr 24.8 7.8E+02 0.017 25.3 14.8 13 154-166 34-46 (520)
263 PF03962 Mnd1: Mnd1 family; I 24.7 5E+02 0.011 23.1 8.9 16 216-231 114-129 (188)
264 PF07111 HCR: Alpha helical co 24.5 9.6E+02 0.021 26.3 11.4 74 179-254 476-556 (739)
265 COG1792 MreC Cell shape-determ 24.5 4.6E+02 0.01 24.7 8.4 54 200-253 54-110 (284)
266 PF14282 FlxA: FlxA-like prote 24.4 3.5E+02 0.0076 21.8 6.6 52 182-239 20-71 (106)
267 PF02268 TFIIA_gamma_N: Transc 24.2 74 0.0016 23.1 2.4 27 145-173 20-46 (49)
268 KOG3850 Predicted membrane pro 24.2 4.7E+02 0.01 26.8 8.7 36 198-239 83-118 (455)
269 KOG4797 Transcriptional regula 23.9 1.5E+02 0.0032 25.3 4.4 28 219-246 67-94 (123)
270 smart00338 BRLZ basic region l 23.8 2.8E+02 0.0061 19.9 7.9 31 216-246 30-60 (65)
271 PF10481 CENP-F_N: Cenp-F N-te 23.7 7E+02 0.015 24.4 11.1 44 213-256 89-132 (307)
272 PF15112 DUF4559: Domain of un 23.7 7E+02 0.015 24.5 10.9 57 141-198 173-249 (307)
273 COG1579 Zn-ribbon protein, pos 23.7 6.2E+02 0.013 23.8 9.9 60 179-238 108-168 (239)
274 PF05622 HOOK: HOOK protein; 23.7 26 0.00057 36.6 0.0 65 183-247 454-523 (713)
275 PF11471 Sugarporin_N: Maltopo 23.6 1.4E+02 0.0031 22.2 3.9 23 218-240 38-60 (60)
276 PF04977 DivIC: Septum formati 23.5 2.9E+02 0.0062 19.9 5.6 26 213-238 25-50 (80)
277 PHA00276 phage lambda Rz-like 23.5 3.5E+02 0.0077 23.8 6.8 29 223-251 53-81 (144)
278 PF15372 DUF4600: Domain of un 23.4 2.9E+02 0.0064 23.8 6.2 60 179-247 20-81 (129)
279 PF07412 Geminin: Geminin; In 23.3 2.5E+02 0.0053 25.9 6.1 24 179-202 130-153 (200)
280 KOG0804 Cytoplasmic Zn-finger 23.1 8.7E+02 0.019 25.3 12.2 54 179-238 394-447 (493)
281 KOG4196 bZIP transcription fac 23.1 1.1E+02 0.0025 26.5 3.7 23 179-201 79-101 (135)
282 PRK09609 hypothetical protein; 23.1 2.2E+02 0.0047 27.9 6.0 24 221-244 140-163 (312)
283 COG2959 HemX Uncharacterized e 22.9 5.8E+02 0.013 25.8 9.0 40 200-239 85-124 (391)
284 PRK05431 seryl-tRNA synthetase 22.6 7.7E+02 0.017 24.5 10.5 45 220-266 67-111 (425)
285 PF12711 Kinesin-relat_1: Kine 22.5 4.1E+02 0.0089 21.3 7.1 11 179-189 29-39 (86)
286 COG1842 PspA Phage shock prote 22.3 6.2E+02 0.013 23.3 10.6 37 179-215 36-72 (225)
287 PF05812 Herpes_BLRF2: Herpesv 22.2 1.2E+02 0.0026 25.8 3.6 22 184-205 6-27 (118)
288 TIGR01837 PHA_granule_1 poly(h 22.2 4.5E+02 0.0097 21.6 9.5 46 153-198 61-113 (118)
289 PRK06975 bifunctional uroporph 22.2 8E+02 0.017 25.9 10.3 25 217-241 383-407 (656)
290 PF05911 DUF869: Plant protein 22.1 8.5E+02 0.018 26.7 10.7 88 161-251 112-208 (769)
291 KOG4343 bZIP transcription fac 22.1 2.4E+02 0.0052 30.0 6.4 45 157-201 297-343 (655)
292 PF11236 DUF3037: Protein of u 22.1 81 0.0017 25.8 2.5 23 45-67 39-61 (118)
293 PF13863 DUF4200: Domain of un 22.0 4.1E+02 0.0088 21.1 8.9 29 210-238 79-107 (126)
294 PF09730 BicD: Microtubule-ass 22.0 9E+02 0.02 26.3 10.8 20 59-78 284-303 (717)
295 PRK05564 DNA polymerase III su 21.9 87 0.0019 28.9 3.0 50 26-79 141-193 (313)
296 PF08679 DsrD: Dissimilatory s 21.8 90 0.002 24.2 2.6 23 44-66 22-44 (67)
297 KOG2070 Guanine nucleotide exc 21.7 2.1E+02 0.0045 30.3 5.8 35 213-250 624-658 (661)
298 PF06008 Laminin_I: Laminin Do 21.3 6.3E+02 0.014 23.0 15.9 106 139-253 131-247 (264)
299 PF07716 bZIP_2: Basic region 21.2 3E+02 0.0065 19.3 7.3 38 202-239 12-52 (54)
300 PF12777 MT: Microtubule-bindi 21.2 6.4E+02 0.014 24.1 8.8 35 230-264 295-329 (344)
301 PF11932 DUF3450: Protein of u 21.2 6.2E+02 0.013 22.9 11.0 24 179-202 47-70 (251)
302 TIGR02168 SMC_prok_B chromosom 21.1 1E+03 0.022 25.3 14.1 17 67-83 628-644 (1179)
303 PF14775 NYD-SP28_assoc: Sperm 21.1 3.5E+02 0.0076 20.0 5.8 14 218-231 46-59 (60)
304 PF09304 Cortex-I_coil: Cortex 21.1 5E+02 0.011 21.8 12.0 65 166-230 6-76 (107)
305 PF14257 DUF4349: Domain of un 21.1 6.2E+02 0.013 22.9 8.3 20 134-153 101-120 (262)
306 PF09397 Ftsk_gamma: Ftsk gamm 21.0 77 0.0017 24.0 2.0 13 158-170 35-47 (65)
307 TIGR03789 pdsO proteobacterial 21.0 5.7E+02 0.012 23.8 8.1 30 223-256 102-131 (239)
308 COG3009 Uncharacterized protei 21.0 15 0.00034 33.3 -2.0 48 192-239 139-190 (190)
309 PF06785 UPF0242: Uncharacteri 21.0 8.7E+02 0.019 24.5 10.1 71 179-249 97-171 (401)
310 PF06785 UPF0242: Uncharacteri 20.8 8.8E+02 0.019 24.5 9.8 69 186-254 73-155 (401)
311 PF10241 KxDL: Uncharacterized 20.7 4.1E+02 0.0088 20.7 6.2 22 218-239 56-77 (88)
312 PF13514 AAA_27: AAA domain 20.7 1.2E+03 0.026 26.0 13.1 105 161-265 129-239 (1111)
313 PRK11677 hypothetical protein; 20.6 1.5E+02 0.0032 25.5 3.9 17 235-251 63-79 (134)
314 PRK04863 mukB cell division pr 20.5 1.4E+03 0.031 26.9 14.4 33 218-250 389-421 (1486)
315 PF15035 Rootletin: Ciliary ro 20.4 6.1E+02 0.013 22.5 8.1 25 179-203 79-103 (182)
316 PF13991 BssS: BssS protein fa 20.2 1E+02 0.0022 24.2 2.6 22 223-244 46-67 (73)
317 PF10018 Med4: Vitamin-D-recep 20.1 5.9E+02 0.013 22.2 9.2 45 190-238 4-48 (188)
318 KOG1840 Kinesin light chain [C 20.1 7.1E+02 0.015 25.8 9.3 88 151-238 297-390 (508)
319 KOG0996 Structural maintenance 20.1 1.1E+03 0.025 27.4 11.3 9 67-75 721-729 (1293)
320 PF05546 She9_MDM33: She9 / Md 20.0 7.1E+02 0.015 23.1 11.0 67 151-219 46-123 (207)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=98.97 E-value=7.5e-09 Score=105.49 Aligned_cols=121 Identities=27% Similarity=0.290 Sum_probs=105.2
Q ss_pred CChhhhHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHhhhh-h--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 024453 134 TDGSKWVDLFVHEMMSAA-DLDDARGRAARILEVFERSIITNSKA-S--KELEHASLKEHLQSLLNDNQILKKAVSIQHE 209 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~As-d~dDARaRAsRvLEafEksi~~ra~a-a--~~~En~~LKe~l~~l~~eN~iLKRAv~IQhe 209 (267)
-.|-.+|.-||.|.+..- ...+...|..+.++..|+.+...+.. + +..|..+||..++.|..+...|+++++.+++
T Consensus 307 qe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 307 QEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776666665544 47888889999999999987665444 3 7789999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 210 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 210 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
...+++.+.|++.++++++.+||+|||+|...||++..||.+.+.
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~ 431 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPA 431 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChH
Confidence 999999999999999999999999999999999999999987653
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.26 E-value=1.1e-06 Score=59.72 Aligned_cols=38 Identities=42% Similarity=0.655 Sum_probs=34.5
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
.|..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999999999999998764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.23 E-value=1.7e-06 Score=58.97 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..++.|+.+||++++..++.+|++|++|+|.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35889999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.39 E-value=0.00026 Score=48.96 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=32.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
+++-|..+||+..+.+||.+|+.|+.|+-.||+-+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.061 Score=42.05 Aligned_cols=67 Identities=31% Similarity=0.382 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 162 RvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
.|||-+|.-|....-. + +|.|...|||.-..|..|-.- .||.| +...+|..+||+--..+||+||.|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~------~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN------AQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665555 3 899999999887777666443 34544 567789999999999999999987
No 6
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.16 E-value=0.075 Score=41.99 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 162 RvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
-+|+-+|.=|-+..-. + +++|...||++-..|..|+.-++ +.| ++..+|.++||+--..+|++||.|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~------~~r----~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ------HQR----EELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677667665555 3 99999999999988888877543 222 567789999999999999999987
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.57 E-value=0.022 Score=37.59 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
..|.+|..+ +.++....+||..||||++.||.-|
T Consensus 4 ~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 357889999 9999999999999999999999865
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.07 E-value=0.31 Score=37.50 Aligned_cols=60 Identities=32% Similarity=0.431 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 162 RvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
.+|+-+|.=|.+..-. + ++.|+..||++-..|..+|.-|+ +|.++||+--.+++++|+.|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------------~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK-----------------EENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665555 2 78888888877766665554443 55556666666667776654
No 9
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.72 E-value=0.63 Score=41.65 Aligned_cols=72 Identities=28% Similarity=0.291 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK-----------EKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~-----------~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
++-+...|...++.+..||.+||+.=.-|--....|++- +.|+..||..+-.|+++.|++|...--...
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~ 96 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDE 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999998766555555566543 566677777777777777777766554444
Q ss_pred HHH
Q 024453 248 HLQ 250 (267)
Q Consensus 248 HL~ 250 (267)
+|.
T Consensus 97 el~ 99 (194)
T PF15619_consen 97 ELL 99 (194)
T ss_pred HHH
Confidence 444
No 10
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=94.51 E-value=0.34 Score=39.90 Aligned_cols=54 Identities=33% Similarity=0.382 Sum_probs=40.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 190 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
-..|-.+|.|||+||. +.+.++. .|+.-+-+....||++|+.|.+|.+|-+|=+
T Consensus 7 YsKLraQ~~vLKKaVi-------eEQ~k~~---~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVI-------EEQAKNA---ELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566799999996 2222333 5666888888999999999999999987643
No 11
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=94.46 E-value=0.87 Score=39.77 Aligned_cols=77 Identities=30% Similarity=0.363 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhHhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 024453 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQ-KEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 161 sRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQhe-R~~e~e~-~~~E~~~Lkql~~qyqEqir~L 238 (267)
=+|||.+|..+..+-.. +-|...|++..+.|..+..- ++...-|-+ +.-++++ -.+|.+.|...+.+.|++.|.|
T Consensus 32 V~vLE~Le~~~~~n~~~--~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH--EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999988876654 44566777777777665543 333333333 3333333 5677778888888888888888
Q ss_pred Hh
Q 024453 239 EL 240 (267)
Q Consensus 239 E~ 240 (267)
+.
T Consensus 109 ~~ 110 (158)
T PF09744_consen 109 EL 110 (158)
T ss_pred HH
Confidence 83
No 12
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=92.38 E-value=0.27 Score=31.85 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
.|.+|..+ +.++.....+|..||+|++.|+.-|
T Consensus 4 ~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 4 KIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778887 8889999999999999999999765
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.14 E-value=2.8 Score=37.97 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQH---ERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQh---eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+++|...||.++..+..+.. .+.--+|. ++.+...+...|.++|++.+.+.+.+++.||..|-.+.-..+
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777766644 22222222 234445557788889999999999999999999988875443
No 14
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=92.02 E-value=0.34 Score=31.51 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.1
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
.|.+|..+ +.+.+.+..||..|++|++.||.-|.
T Consensus 4 ~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 46777776 67799999999999999999998764
No 15
>PHA02047 phage lambda Rz1-like protein
Probab=91.08 E-value=1.5 Score=36.16 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 201 KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 201 KRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
.|+..|=|++-+.+ .+.+.+++..+..||+++..||.+--.=+--+++|-+.+
T Consensus 26 ~r~~g~~h~~a~~l---a~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n 78 (101)
T PHA02047 26 YRALGIAHEEAKRQ---TARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN 78 (101)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57778888877544 578889999999999999999999888888888887743
No 16
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.71 E-value=4.3 Score=32.03 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhh-hhh-------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 024453 164 LEVFERSIITNS-KAS-------KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (267)
Q Consensus 164 LEafEksi~~ra-~aa-------~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi 235 (267)
.+.+.+++..|. ... +.++...++.+++.|..+.+.+-+.|+.--.-..+.++...|+..+|..+..+++++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888774 221 777888889999999999888888887665444588889999999999999999999
Q ss_pred HHHHhhhHHHH
Q 024453 236 RNLELRNYALK 246 (267)
Q Consensus 236 r~LE~~NYaL~ 246 (267)
+.+|..-+.+-
T Consensus 91 ~~~e~~l~~~l 101 (108)
T PF02403_consen 91 KELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776653
No 17
>PF15058 Speriolin_N: Speriolin N terminus
Probab=90.57 E-value=0.24 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILKKA 203 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRA 203 (267)
.||+.||+++ +|++||.-||||
T Consensus 19 ~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 19 RENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHH
Confidence 4666666666 666666666666
No 18
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.64 E-value=0.56 Score=38.19 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR 210 (267)
.++|+..|+.++..|..||.|||+|..|=..|
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 67889999999999999999999999886543
No 19
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=88.98 E-value=10 Score=30.12 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 150 AADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 150 Asd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
...+++|-.|=.+.|..||++|..|-.. ......+.+.++.|..+..-|-..+--.-.|....+..+.|+.+ -+.
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~--~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~---rL~ 77 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLER--DRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR---RLD 77 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH
Confidence 4568899999999999999999998776 11124555666666666666666666666666666666666655 555
Q ss_pred HHHHHHHH
Q 024453 230 QYQDQARN 237 (267)
Q Consensus 230 qyqEqir~ 237 (267)
-..|.||.
T Consensus 78 ~a~e~Ir~ 85 (89)
T PF13747_consen 78 SAIETIRA 85 (89)
T ss_pred HHHHHHHH
Confidence 55555554
No 20
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.75 E-value=13 Score=33.89 Aligned_cols=90 Identities=29% Similarity=0.358 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHH
Q 024453 161 ARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQ 230 (267)
Q Consensus 161 sRvLEafEksi~~ra~a-a-----~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~q 230 (267)
..|.+.|||.|...... . .+.+...+....+.+..+-.-+-++|.=.|.|..-+.+. ..-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999998886655 1 233344444455555566677888999888877544322 2222357889999
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 024453 231 YQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 231 yqEqir~LE~~NYaL~~HL~ 250 (267)
|.+.|+..|+..-+|.-|-.
T Consensus 123 y~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 21
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.93 E-value=11 Score=35.80 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
++.+...|++.|+..+...++|+.+|+..|
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333445556666666666666666666544
No 22
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=86.01 E-value=9.9 Score=32.65 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
+..-+..++.+-..+..-|+-|.++ .++-++...++. ..+++.+...++.+.+.+|++|...|-.|+-
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4445555555655666666666555 556655554443 5778889999999999999999999998864
No 23
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.77 E-value=6.7 Score=37.67 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhHHHHH-------HHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILK-------KAVSIQHERHLEQ-EQKEKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLK-------RAv~IQheR~~e~-e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
+..-|+.+...|..+|+-|+ --+--||...-.. .....++.|++.++.|.++.||.||+.|.-|--
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34444555555555555443 3344444333221 235678999999999999999999999987754
No 24
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=1.2 Score=41.88 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=29.6
Q ss_pred cCCCCCHHHHHHHHhhcchhHHHHHHHHhccc
Q 024453 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (267)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (267)
|||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 79999999999999998889999999987765
No 25
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.55 E-value=22 Score=29.50 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
+...||+++..+..+..-|+..+..........+. -..+...|+.-+...+.++.-|...|=-|--+|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544443 244555556666666666666666665554444
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.00 E-value=24 Score=29.50 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------hhH-hHHHHHHHHH
Q 024453 153 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHE-------RHL-EQEQKEKEVE 222 (267)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQhe-------R~~-e~e~~~~E~~ 222 (267)
|-.-|.|-.+..|.++.-+..-... . ++..+..||++++.+.++...++.-..--.. ..+ +-++.++-..
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888877775444 2 5555556666665555555544332221111 111 1222333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 223 LLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
.+.+...||.-.||+-|...-.|.-+|.
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888999999999999998888775
No 27
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.79 E-value=11 Score=38.38 Aligned_cols=59 Identities=27% Similarity=0.266 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
+.+||+.||++.++|.+...-+.. .||..-..+..+..+|.++|+..+.+.+.+|..|+
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~--~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQ--QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555442222221 23433333334445555555555555555555554
No 28
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.59 E-value=16 Score=32.79 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
+..||..|++-|..+..|+.-|++-+.- + +.-...++.+|..+...+++|+.|+..+-+|.....+-.
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~-y------~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN-Y------EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777665542 2 222345666666677777777777777777766655443
No 29
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.12 E-value=2.9 Score=38.17 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q 230 (267)
.+.|.+|+++|.+||.=||+-|..= +|.+.||.++.|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi-----------rEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI-----------RENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4568999999999999999988653 456677777554
No 30
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.99 E-value=30 Score=29.88 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
-++|+..|++++..+..+.+.|.- |+.....|...|.+.+.+-|++|..||..|..+.-||+-.-
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~----------EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLEL----------ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466777788888777777766542 44555677778888888899999999999999998887654
No 31
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=82.08 E-value=13 Score=36.38 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLV----------ISQYQDQARNLELRNYALK 246 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~~~Lkql----------~~qyqEqir~LE~~NYaL~ 246 (267)
+|-.|-.|+.|++....||.||-+. .||| |.|...|-+++|... |-.||-|+..|-..--.|-
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999885 3776 666677777777654 4578888877766666666
Q ss_pred HHHHHHh
Q 024453 247 LHLQRAQ 253 (267)
Q Consensus 247 ~HL~qA~ 253 (267)
--|-.|.
T Consensus 80 RELARaK 86 (351)
T PF07058_consen 80 RELARAK 86 (351)
T ss_pred HHHHHhh
Confidence 6665554
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=81.31 E-value=71 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=21.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Q 024453 143 FVHEMMSAADLDDARGRAARILEVFERSIIT 173 (267)
Q Consensus 143 ~V~EM~~Asd~dDARaRAsRvLEafEksi~~ 173 (267)
++.++.....++.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766666544
No 33
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=81.28 E-value=9.1 Score=34.91 Aligned_cols=63 Identities=29% Similarity=0.382 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEV--------ELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E~--------~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
|+.+||+-.++|..||+=|+-.-.+.- .|+|--. ..+|- .-++|-|.+|+.+|+.||..--.|
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999987776654 3554322 23332 345778888999999887765554
No 34
>PLN02678 seryl-tRNA synthetase
Probab=80.87 E-value=19 Score=36.19 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 258 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 258 (267)
+.+|-..|+.+++.|..+.+.+-+.+..=..-..+.++...|+++||+.+.+.+++++.+|..-+.+-+ .+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~---------~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK---------TI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hC
Confidence 444555566666666666666666665311122355667788889999999999999988887774322 25
Q ss_pred CCCCCCCC
Q 024453 259 PRQFHPDI 266 (267)
Q Consensus 259 ~g~f~PDV 266 (267)
|-.-||||
T Consensus 109 PNi~~~~V 116 (448)
T PLN02678 109 GNLVHDSV 116 (448)
T ss_pred CCCCCccC
Confidence 66666766
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.99 E-value=20 Score=31.47 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 161 ARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 161 sRvLEafEksi~~ra~a--a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
..-|+.+++.+...... .+..|+..|++.+..+..+-.-..+++.+.+ -|+..|.-.+..-+++++.|
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~----------DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ----------DELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666555 2777777777777777766666666654443 67777777788888999999
Q ss_pred HhhhHHHH
Q 024453 239 ELRNYALK 246 (267)
Q Consensus 239 E~~NYaL~ 246 (267)
|.-|--|-
T Consensus 171 ~~En~~Lv 178 (194)
T PF08614_consen 171 EEENRELV 178 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887764
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.37 E-value=11 Score=31.09 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+..|...||.++..|+.||+-|+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777665
No 37
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=79.30 E-value=21 Score=28.92 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
+..||+...+.+..-...|.-|+..+.+.+.-. ++..+.-+++++-..+++|+||+...+|
T Consensus 30 L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~---~~~~~~~qq~r~~~e~~~e~ik~~lk~d 90 (110)
T PF10828_consen 30 LRAENKAQAQTIQQQEDANQELKAQLQQNRQAV---EEQQKREQQLRQQSEERRESIKTALKDD 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 555666666666666666777777666444333 3334445577788999999999876654
No 38
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=79.23 E-value=2.8 Score=28.48 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 4 i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 4 IAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45555555 568999999999999999999988765
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.08 E-value=77 Score=35.47 Aligned_cols=70 Identities=27% Similarity=0.267 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH------------------HHHHHHHhhHh----------------------HHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK------------------AVSIQHERHLE----------------------QEQKE 218 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR------------------Av~IQheR~~e----------------------~e~~~ 218 (267)
+|.|..+|||+++.|..+--|||- =+-|||.|+|| .|.++
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888884 24578877655 34557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
.|+..|++.-...+.++-.+|-..--|.-.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665555443
No 40
>PRK11637 AmiB activator; Provisional
Probab=77.06 E-value=76 Score=30.97 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=4.8
Q ss_pred HhcCCCchH
Q 024453 147 MMSAADLDD 155 (267)
Q Consensus 147 M~~Asd~dD 155 (267)
+.++.++++
T Consensus 145 Ll~a~~~~~ 153 (428)
T PRK11637 145 ILSGEESQR 153 (428)
T ss_pred HhcCCChhH
Confidence 445666544
No 41
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=76.84 E-value=1.8 Score=41.05 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.8
Q ss_pred HHhcCC-CCCHHHHHHHHhhcchhH
Q 024453 47 LLQMFP-DVDPEVVKSVLGEHDNKI 70 (267)
Q Consensus 47 L~~lFP-~md~q~le~aLe~cgndl 70 (267)
|..+|| -|++++.|+.+..||||+
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~ 28 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDI 28 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccch
Confidence 789999 899999999999999997
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.03 E-value=20 Score=34.11 Aligned_cols=50 Identities=30% Similarity=0.278 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHhhHhHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK----AVSIQHERHLEQEQKEKEVELLKLVI 228 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR----Av~IQheR~~e~e~~~~E~~~Lkql~ 228 (267)
+..|.+.|-|+-++|..||..|.+ .++-||+--.+++..++||..|||.+
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 555677777777888888877754 57888998889999999999988754
No 43
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.84 E-value=36 Score=33.66 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
+.++-..|+.+++.|..+.+.+-+.+..-.....+.++...|...||+.+.+..++++.+|..-+.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777775422122245556667777777777777777777766555433
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.61 E-value=15 Score=30.58 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
+.+|...||.++..|+.||+-|+.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888887763
No 45
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=75.06 E-value=43 Score=29.67 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=53.9
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHH-HH-----HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHH-H---H
Q 024453 136 GSKWVDLFVHEMMSAADLDDARGRAA-RI-----LEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKA-V---S 205 (267)
Q Consensus 136 g~eWVEl~V~EM~~Asd~dDARaRAs-Rv-----LEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRA-v---~ 205 (267)
--+|++++.+...+.-.+.|-+.+.. .+ ...=+..+.+|-. -+......+.++++.|.+.-..+-.- | .
T Consensus 42 dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~-lLe~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 42 DLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFE-QLEAQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44899999999999999999988663 11 0000111111110 13333444444554444433333322 2 2
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 024453 206 IQHERHLEQEQKEKEVELLKLVISQYQ 232 (267)
Q Consensus 206 IQheR~~e~e~~~~E~~~Lkql~~qyq 232 (267)
.||.| |.|++...++.|.+.+++-+
T Consensus 121 l~hr~--e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 121 LQHRR--EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46633 78889999999888888843
No 46
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.82 E-value=46 Score=30.36 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 192 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
.+.+||..||+=++....+..+++...+|.++||+++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444443333333344444445566666666543
No 47
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.82 E-value=17 Score=40.82 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCC
Q 024453 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELL-KLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFH 263 (267)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~L-kql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~f~ 263 (267)
.|+|+++.|..+ |+.|=+-|-. +++++.+|...| +++-..|+|+||.+|.-|-++.-||+.+-.+-..+|.|+
T Consensus 368 ElReEve~lr~q---L~~ae~~~~~---el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~sgikv 441 (1714)
T KOG0241|consen 368 ELREEVEKLREQ---LEQAEAMKLP---ELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLENSGIKV 441 (1714)
T ss_pred HHHHHHHHHHHH---Hhhhhhccch---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344444444332 3334444444 445555665544 667778999999999999999999998887667777775
Q ss_pred CC
Q 024453 264 PD 265 (267)
Q Consensus 264 PD 265 (267)
-|
T Consensus 442 ~d 443 (1714)
T KOG0241|consen 442 GD 443 (1714)
T ss_pred cc
Confidence 33
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.20 E-value=40 Score=35.37 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
++.|.+.--++++.|..+|.-||.-|..|.-=-.|.+.+++|+.+|++-|..-+-++-.|-..-
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677889999999999999999977777889999999999888876665555554433
No 49
>PRK09039 hypothetical protein; Validated
Probab=73.44 E-value=50 Score=31.84 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHHHHH--HHHHHhhhh--h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH
Q 024453 152 DLDDARGRAARILEVFE--RSIITNSKA--S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL 212 (267)
Q Consensus 152 d~dDARaRAsRvLEafE--ksi~~ra~a--a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~ 212 (267)
....+..|+...=+.+. |.+.+.+.+ . ++.|...||+|+..|..+-..++.--.-++.+..
T Consensus 110 ~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665533332 222222222 1 5555555555555544444444444444443333
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.78 E-value=21 Score=36.56 Aligned_cols=21 Identities=5% Similarity=0.271 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQI 199 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~i 199 (267)
.|.-...|+++|+.|.+|...
T Consensus 74 qQ~kasELEKqLaaLrqElq~ 94 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDV 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666433333
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.14 E-value=46 Score=34.11 Aligned_cols=55 Identities=29% Similarity=0.273 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAV-SIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv-~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 236 (267)
+.+||..||++...+-.. +-.|| ..+.+-.++.+....|+++++.++.+.+.|+.
T Consensus 85 l~~eN~~L~~r~~~id~~---i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 85 LKAENERLQKREQSIDQQ---IQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHhhhhHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544333221 22222 22222233444445555555555555555554
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.80 E-value=40 Score=35.12 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+..+....+.+..|+..|+.-..-+-.|..++++- .+......+++.++++-...+|+.+.-|.-+|+
T Consensus 194 ~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk 265 (546)
T PF07888_consen 194 QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLK 265 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555444444444444421 222233333444444444444554444444443
No 53
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=71.44 E-value=18 Score=27.84 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=43.1
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 207 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
-..|.++.+.+.+++.+|++..-+-+--++.|+..-+.+..|.|.+++
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~E 72 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQE 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Confidence 456889999999999999999988889999999999999999998854
No 54
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.04 E-value=82 Score=28.57 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE 222 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~ 222 (267)
+..|...|+.+++.|...|.-|++-|.-|+....+.+.+..++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777888888888777777766665544444
No 55
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=69.76 E-value=47 Score=25.50 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhH----h---HHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHL----E---QEQ-KEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~----e---~e~-~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
+-+++..|+.||.-||-|+.-=|.=++ + +.+ .-.|..-++..+....+-|.+|...|
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456888999999999998864432222 2 222 23344455666666666666665443
No 56
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=68.60 E-value=3.9 Score=27.58 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (267)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999998875
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=68.58 E-value=74 Score=35.31 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhh---h---hhHHHHHHHHHHHHHHhhHHHH----------------HHHHHHHHHhh-H-hHHHH
Q 024453 162 RILEVFERSIITNSKA---S---KELEHASLKEHLQSLLNDNQIL----------------KKAVSIQHERH-L-EQEQK 217 (267)
Q Consensus 162 RvLEafEksi~~ra~a---a---~~~En~~LKe~l~~l~~eN~iL----------------KRAv~IQheR~-~-e~e~~ 217 (267)
+.|+.+-+++...-+. + ++.||+.|+.|...+..+-.-- ||+-+.-+-|. + -.+..
T Consensus 298 eeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 298 EELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555554432222 1 7788888877765543221111 22222222221 1 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
..|+|.|+.+-+.-||||--|.-..+.|.+-
T Consensus 378 e~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 378 EEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 5678889999999999999998888888877
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=68.35 E-value=1.6e+02 Score=31.01 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
++.+...+++++..+..+...|++-+.--+.+.++++...+++..+..-+...+++|..+|.
T Consensus 211 ~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666555556656655555555544444444444444433
No 59
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=67.92 E-value=42 Score=30.26 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024453 214 QEQKEKEVELLKLVISQYQDQARNLELRNY 243 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NY 243 (267)
++++.. .||.+=+=|.|||-+||..|-
T Consensus 139 Le~ke~---el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 139 LEEKEA---ELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444555 455688889999999999884
No 60
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=67.79 E-value=29 Score=31.18 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHh--------hhhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 024453 162 RILEVFERSIITN--------SKASKELEHASLKEHLQSLLNDNQILKKA 203 (267)
Q Consensus 162 RvLEafEksi~~r--------a~aa~~~En~~LKe~l~~l~~eN~iLKRA 203 (267)
-||.+|||.+.+. |..++.+=...+|+||-.++.|-+-||..
T Consensus 108 VvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 108 VVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998873 11235555666777777777777766653
No 61
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.94 E-value=55 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+..||..|++++..+..|+.-|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666665553
No 62
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=66.73 E-value=16 Score=34.29 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
+++||+.||+++..|..+-.. .+++..+|..+||+++.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~-------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEI-------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 678888888887665222211 12335567777777653
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.72 E-value=61 Score=29.42 Aligned_cols=27 Identities=4% Similarity=0.022 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 214 QEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
++...+|++.++.-++..+.++.+++.
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555543
No 64
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=64.85 E-value=1e+02 Score=30.18 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 163 ILEVFERSIITNSKA---SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 163 vLEafEksi~~ra~a---a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
-++..++.+..-... ....|...+..+...|.++-..+|.-+..=...+.+|.+.++|++-.+++..+|-.+.+.+.
T Consensus 321 q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 321 QLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444 14446677788888888888888888888888888888888888888888877777776665
Q ss_pred hh
Q 024453 240 LR 241 (267)
Q Consensus 240 ~~ 241 (267)
..
T Consensus 401 ~~ 402 (458)
T COG3206 401 IQ 402 (458)
T ss_pred Hh
Confidence 43
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=64.74 E-value=1.2e+02 Score=34.71 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH-HHH-HHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK-AVS-IQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR-Av~-IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
..++++.|.+.++.+..+-..|+| =-+ .|| .+++++++ ..+++.|+..+.+|+++++-++..|-.+.-+++..
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~-~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQH-EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 456677777777777777777775 222 234 45565543 55677788899999999999999888887777654
Q ss_pred h
Q 024453 253 Q 253 (267)
Q Consensus 253 ~ 253 (267)
-
T Consensus 542 ~ 542 (1317)
T KOG0612|consen 542 N 542 (1317)
T ss_pred H
Confidence 3
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.42 E-value=48 Score=28.23 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 180 ~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
..|+..|++++..|..++..|+--++.=..... -++...++.+|++-+.++++++..|..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555544444333322 233556666666667777776666654
No 67
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.21 E-value=13 Score=28.07 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
.||.-||.-+...++++..||..|.-|+-+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888888887755
No 68
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.06 E-value=1.1e+02 Score=29.06 Aligned_cols=99 Identities=28% Similarity=0.381 Sum_probs=64.2
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHH----------
Q 024453 134 TDGSKWVDLFVHEMMSAADLDDARGRAAR---ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL---------- 200 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~Asd~dDARaRAsR---vLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iL---------- 200 (267)
..|+.--++|=+|+ ++-++|.+|.. =+.-+||+|.+.... ...+...++.++..+..+..-|
T Consensus 131 ~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~ai~~-~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 131 QRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEAIKA-VQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999998 56677766654 145588888876555 5667777777777776665544
Q ss_pred -----HHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 201 -----KKAVSIQHERH---LEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 201 -----KRAv~IQheR~---~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
||-=..|+-|- -|||....||+. +-..|=++.|.|+=
T Consensus 206 LER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 206 LERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH
Confidence 33334444442 355555554444 66677777776653
No 69
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.91 E-value=1.2e+02 Score=31.95 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhh-h----hhHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHhhH--hHHHHHHHHHH
Q 024453 153 LDDARGRAARILEVFERSIITNSKA-S----KELEHASLKEHLQSLLNDNQILKKAV--SIQHERHL--EQEQKEKEVEL 223 (267)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~ra~a-a----~~~En~~LKe~l~~l~~eN~iLKRAv--~IQheR~~--e~e~~~~E~~~ 223 (267)
++|+-.-+.++=|-+++-+.+.+.- . +--+..-+++++--+..||..|+--+ .|+-.|+- |+++.+-.-.+
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777665554 1 33344555666666666666555432 22322321 33333333334
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC-CCCCC
Q 024453 224 LKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPR-QFHPD 265 (267)
Q Consensus 224 Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g-~f~PD 265 (267)
+-+.+...||.|+.| .+--++++|.+.+.. +| +|+|+
T Consensus 287 ~m~~~~EaeeELk~l-rs~~~p~~~s~~~~~----~~~~fp~~ 324 (596)
T KOG4360|consen 287 CMQMLHEAEEELKCL-RSCDAPKLISQEALS----HGHHFPQL 324 (596)
T ss_pred HHHHHHHHHHHHHhh-ccCCCcchhHHHHHH----hhhhCChh
Confidence 444666666666666 355678899998886 44 66664
No 70
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=63.65 E-value=1.3e+02 Score=28.21 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=34.7
Q ss_pred CChhhh----HHHHHHH---HhcCCC-chHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 024453 134 TDGSKW----VDLFVHE---MMSAAD-LDDARGRAARILEVFERSIITNSKASKELEHASLKEHL 190 (267)
Q Consensus 134 ~~g~eW----VEl~V~E---M~~Asd-~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l 190 (267)
.=.+.| .-+|..| |+-.-| +.+||.-|..||.+=++.=..-=. ..++|...|+++.
T Consensus 20 iI~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~-qaqqqad~L~~~~ 83 (224)
T PRK15354 20 IIESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKV-EQQQELACLRKNT 83 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 346899 5667778 765555 578999999999876654332111 1444555554443
No 71
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=62.80 E-value=23 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE 239 (267)
.|+..|+.-|++-..+|+.|+
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555554
No 72
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.76 E-value=96 Score=31.96 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 161 sRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.-.+++..|+|..+... ++--.+.+.+++..+..+|..|. .-|--+.+.++++++ ++|..+..|+++|.-|+.
T Consensus 370 ~~~~e~~kk~~e~k~~q-~q~k~~k~~kel~~~~E~n~~l~---knq~vw~~kl~~~~e---~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQ-LQTKLKKCQKELKEEREENKKLI---KNQDVWRGKLKELEE---REKEALGSKDEKITDLQE 442 (493)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44555666666665554 11112222223333333333332 223333333433333 455577777777777777
Q ss_pred hhHHHHHHHH
Q 024453 241 RNYALKLHLQ 250 (267)
Q Consensus 241 ~NYaL~~HL~ 250 (267)
.--=|.+||-
T Consensus 443 QlrDlmf~le 452 (493)
T KOG0804|consen 443 QLRDLMFFLE 452 (493)
T ss_pred HHHhHheehh
Confidence 7667777775
No 73
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.73 E-value=55 Score=32.33 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-E-QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~-e-~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
+.++-..++.+++.|..|.+.+-+.+.. ..+.+ + .++...+...||+.+.+.+++++.+|..-+.+-++
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 105 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGK-AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS-------- 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 3444455555666666655555555533 11111 2 34445556666665555555555555544443322
Q ss_pred CCCCCCCCCC
Q 024453 257 SIPRQFHPDI 266 (267)
Q Consensus 257 ~~~g~f~PDV 266 (267)
+|-.-||||
T Consensus 106 -lPN~~~~~v 114 (418)
T TIGR00414 106 -IPNIPHESV 114 (418)
T ss_pred -CCCCCCccC
Confidence 555556665
No 74
>CHL00098 tsf elongation factor Ts
Probab=62.39 E-value=5.7 Score=35.95 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccccchh
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISE 87 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa~~ 87 (267)
|-.||.. -+-.-.--.+||++||+|+|.||.-|..--+..+..
T Consensus 5 ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~k 47 (200)
T CHL00098 5 VKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGLASANK 47 (200)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHH
Confidence 4455544 334444568999999999999999998854444433
No 75
>PLN02320 seryl-tRNA synthetase
Probab=62.36 E-value=1.1e+02 Score=31.51 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCC
Q 024453 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIP 259 (267)
Q Consensus 180 ~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~ 259 (267)
.++...++.+++.|..|.+-+-+.+.. ..-..+.++...|...||+.+....++++.+|. -|.+-.. .+|
T Consensus 99 d~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~-------~l~~~~l--~iP 168 (502)
T PLN02320 99 YENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD-------ELQLEAQ--SIP 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--hCC
Confidence 334444555666666665555555532 111123344445555555555555555554444 4443222 356
Q ss_pred CCCCCCC
Q 024453 260 RQFHPDI 266 (267)
Q Consensus 260 g~f~PDV 266 (267)
-.-||||
T Consensus 169 N~~h~~V 175 (502)
T PLN02320 169 NMTHPDV 175 (502)
T ss_pred CCCCccC
Confidence 6666665
No 76
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=61.83 E-value=1.1e+02 Score=26.54 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS----QYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~----qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
...|...||.||...-.+-.=||.. ..+.++.+.++..|+.-.. .|+.++..+.. ||||...|..|-
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~ak 95 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 4456666777777666666666652 3455666677777766666 88888888765 899999998753
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.60 E-value=1.5e+02 Score=28.16 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
-+.|...||++|..+..+..-+|+-+.-..... +....++..++....+++++|..+|
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el---~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEEL---EELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776666655444333 4444555566666777777777666
No 78
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=61.57 E-value=74 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
++++.+.+.||..|..|.|+|+.+.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998874
No 79
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=60.10 E-value=11 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+.+..-..+||++|++||-.||..|..
T Consensus 88 gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 88 GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 445555778999999999999998753
No 80
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.95 E-value=37 Score=30.19 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQIL 200 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iL 200 (267)
+.+||..|++++..|..+|.-|
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666555444
No 81
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=59.89 E-value=6.5 Score=37.47 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHhhcchhHHHHHHHHhccccccchh
Q 024453 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNISE 87 (267)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~L~L~sa~~ 87 (267)
--.+||++|++|||.||+-|..--+..+..
T Consensus 21 dCKkAL~e~~gDiekAi~~LRkkG~akA~K 50 (290)
T TIGR00116 21 DCKKALTEANGDFEKAIKNLRESGIAKAAK 50 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhchhHHHH
Confidence 367999999999999999999854444433
No 82
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=59.82 E-value=1.6e+02 Score=32.07 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
++.....++.++..+.-||..|.+++ .+|-+-..+...+..+...-+.-.+.++..+|..|-+|+|-++
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788889999999999999988 4566666666777777777777788888889999999988765
No 83
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.59 E-value=1.3e+02 Score=26.74 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
...++.++..|..++.-|+.-+.-.-.+....+.+..+..+ .....+++.|.-|..+|--|+-+|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777777666554444333333333322 33567888888888888888888764
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.52 E-value=1.1e+02 Score=25.78 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 024453 182 EHASLKEHLQSLLNDNQIL 200 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iL 200 (267)
|...||.++.+|..+..-|
T Consensus 31 E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 31 ELASLQEELARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=58.88 E-value=1.7e+02 Score=28.96 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
.+.++..|+.++..+..+-..+++.+.-+-+... +.++...++..+...+.+.+.++..|+.+-..
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443333322111 22333444444444444444444444444333
No 86
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=58.24 E-value=83 Score=24.13 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
.|+..|+.|.-.|..|-.+.-+.|.+--++- ..+...-.| ++.-+|+++++.++..=-+|
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999988886653332 234445555 78889999999988754444
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=58.15 E-value=2.4e+02 Score=29.54 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=9.4
Q ss_pred ccccccCCCCCCCCCCccccc
Q 024453 10 VGFEEICGSSSPTSAKRSRCS 30 (267)
Q Consensus 10 s~fedl~~s~~p~~sKR~Rcs 30 (267)
.+|-++..+= +| ..+.=|.
T Consensus 7 ViF~nV~~~Y-~P-~~~v~C~ 25 (546)
T PF07888_consen 7 VIFNNVAKSY-IP-GTDVECH 25 (546)
T ss_pred EEEecccccc-CC-CCCeEEE
Confidence 3666665553 23 3455553
No 88
>PRK09377 tsf elongation factor Ts; Provisional
Probab=57.92 E-value=7.3 Score=37.11 Aligned_cols=42 Identities=29% Similarity=0.274 Sum_probs=28.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccccch
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNIS 86 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa~ 86 (267)
|-.||.. -+-.-.--.+||++|++|+|.||+-|..--+..+.
T Consensus 9 IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~ 50 (290)
T PRK09377 9 VKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAA 50 (290)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHH
Confidence 4444443 22233346799999999999999999985444443
No 89
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=57.90 E-value=15 Score=38.43 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhh-h---hhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 024453 163 ILEVFERSIITNSKA-S---KELEH-ASLKEHLQSLLNDNQILKKAVSIQHERH 211 (267)
Q Consensus 163 vLEafEksi~~ra~a-a---~~~En-~~LKe~l~~l~~eN~iLKRAv~IQheR~ 211 (267)
||.-..+.|..|-.| + -.||. ..|+-.|.+|+.||.+||+-=+---.|.
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555666667766555 3 44443 3466667777777777766444433333
No 90
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=57.77 E-value=7.6 Score=35.00 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=31.6
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccccchh
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISE 87 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa~~ 87 (267)
+|-.||.. -+....--.+||++|++|+|.||.-|..--+..+..
T Consensus 7 ~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~k 50 (198)
T PRK12332 7 LVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAK 50 (198)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHH
Confidence 45556655 344455578999999999999999999854444433
No 91
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.36 E-value=1.9e+02 Score=30.55 Aligned_cols=37 Identities=35% Similarity=0.358 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 215 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e 215 (267)
+++|...|.++++...++|..|-+...=|-+|..+++
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444444444444
No 92
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=57.04 E-value=19 Score=28.43 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~I 206 (267)
+++||..||++|+.|..|-.-+||-+.|
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6788888888888877776666666555
No 93
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=56.81 E-value=13 Score=31.45 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 34455567899999999999998774
No 94
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.81 E-value=33 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQ 207 (267)
+..|..+|++.+..+..++.+|+.-++-|
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 67788888888888888888888766544
No 95
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=56.22 E-value=60 Score=28.44 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE-LLKLVISQYQDQARNLE 239 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~-~Lkql~~qyqEqir~LE 239 (267)
+..|...|..+++.|..+|.-|..-+.-.+....-++++..++. .++.+...|.+-|+++-
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999998555544444444454444432 55667777777777653
No 96
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=56.19 E-value=1e+02 Score=24.53 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+++.+.-=+.=.+++..+..+++..-+.+++-.++|..||..-|.|.-+.+
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455666777777778888888899999998888876655
No 97
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=55.77 E-value=70 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~ 205 (267)
..|.+..|..||..||-|+.
T Consensus 83 KdETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999875
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.46 E-value=1.6e+02 Score=26.45 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
..+|...|+.++....++...|+.+-.....-.+++.+...|-..|.|-+.+-+..-..|.
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888877777666666666655555555555555444444443
No 99
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=55.18 E-value=90 Score=28.47 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQIL 200 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iL 200 (267)
+++||+.||+++..|..++.-+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 74 LREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444
No 100
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=54.90 E-value=21 Score=31.35 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 024453 161 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK-EKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 161 sRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~-~~E~~~Lkql~~qyqEqir~LE 239 (267)
..-|..+++.+...... ...=-.++|+.+-.-|.|+++.++-|.++.... ..-...|.+-+.+|+|-.|+|.
T Consensus 50 ~~~l~~L~~~~~~~~~~-------~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~ 122 (173)
T PF07445_consen 50 EQTLAQLQQQVEQNRLQ-------QVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLL 122 (173)
T ss_pred HHHHHHHHHHHhcChHH-------HHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHH
Confidence 34555666665543321 001124567777788999999999888876541 2455678889999999999999
Q ss_pred hhhHHHHHHHHHH
Q 024453 240 LRNYALKLHLQRA 252 (267)
Q Consensus 240 ~~NYaL~~HL~qA 252 (267)
..+-=....|.++
T Consensus 123 ~mi~~~e~~l~~~ 135 (173)
T PF07445_consen 123 AMIQEREQQLEQA 135 (173)
T ss_pred HHHHHHHHHHHhC
Confidence 8877666666654
No 101
>PRK11637 AmiB activator; Provisional
Probab=54.68 E-value=2.2e+02 Score=27.86 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE 239 (267)
.+++.+|++...+++..|..|+
T Consensus 232 ~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 232 QQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555443
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.53 E-value=38 Score=35.29 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=38.9
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 205 SIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 205 ~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.|=+.|.+|. +|+++|.--++-|=|+||-||..|-.|..-+.....
T Consensus 32 ~ir~sR~rEK----~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 32 PIRDSREREK----KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666665 688899999999999999999999999998887665
No 103
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.97 E-value=70 Score=30.04 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=4.7
Q ss_pred HHhhhHHHHHHH
Q 024453 238 LELRNYALKLHL 249 (267)
Q Consensus 238 LE~~NYaL~~HL 249 (267)
|+..|--|+--|
T Consensus 96 l~~EN~rLr~LL 107 (283)
T TIGR00219 96 LKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHh
Confidence 333344444333
No 104
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=53.73 E-value=31 Score=33.72 Aligned_cols=15 Identities=40% Similarity=0.368 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSL 193 (267)
Q Consensus 179 ~~~En~~LKe~l~~l 193 (267)
+.+||..||+++..|
T Consensus 62 L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 62 LETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554444
No 105
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.48 E-value=2.3e+02 Score=29.71 Aligned_cols=39 Identities=31% Similarity=0.416 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
...+.|+..+|.......+.++.|-..|--|.-+|..+-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345788889999999999999999999999998887664
No 106
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=3.3e+02 Score=29.51 Aligned_cols=81 Identities=23% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 258 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 258 (267)
+..|.++.+.|...+.-|-+..+--++...+|.++ ..++.+|++.++..|--+-..=..+|-|-+||-.+......
T Consensus 50 ~~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 50 FDELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34455555666666666666666666666666544 67788888899888888877888889999999999987766
Q ss_pred CCCCC
Q 024453 259 PRQFH 263 (267)
Q Consensus 259 ~g~f~ 263 (267)
+|..|
T Consensus 130 ~~~~~ 134 (698)
T KOG0978|consen 130 YGNGN 134 (698)
T ss_pred CCCcc
Confidence 66543
No 107
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.03 E-value=76 Score=24.40 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
++.+|..|++....|..||.-||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 77778888888888888888777
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.66 E-value=71 Score=32.83 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
+|++.+++....++++|+.||..|-.|+-.+
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555544444
No 109
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.25 E-value=95 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 199 ILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 199 iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
-.|.+|--+|.+ -.++..+|+..+.+|+.+++.||.+.
T Consensus 48 rIkq~FekkNqk------sa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 48 RIKQVFEKKNQK------SAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555555533 36789999999999999999999987
No 110
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.12 E-value=1.7e+02 Score=27.93 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER-HLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR-~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+..-...+|+.++.+++||.-|..- +++ +.+|++.+.++..|..-.++..|..|.|+-.-|-|.-.+-
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~e----leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKE----LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 4556778888899999888755432 333 3478888888888888888888888888888887776554
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.87 E-value=1.2e+02 Score=29.09 Aligned_cols=57 Identities=25% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.|...+|++|..+..++...++=+.....+. +.....+...+....+++++|+.+|.
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l---~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEEL---QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777766655555444 34445555666677788888887765
No 112
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=50.22 E-value=2.8e+02 Score=28.52 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=25.5
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 139 WVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 139 WVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
|+=.|+.- ....+.+.+.|=.++.+.+++........ +..|+++++.|..+....++
T Consensus 68 ~~~~~~~~--~~~~l~~~~~~l~~~~~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~ 124 (779)
T PRK11091 68 WAVYFLSV--VVEQLEESRQRLSRLVAKLEEMRERDLEL-----NVQLKDNIAQLNQEIAEREK 124 (779)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44444433 22334445555555555555554443222 23344445555444443333
No 113
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=2.5e+02 Score=30.03 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
++|=+.+-+..-++++.+..++..|+..+..-.+.+..||.
T Consensus 462 ~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 462 FRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555544444444443
No 114
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=49.88 E-value=2.1e+02 Score=27.86 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhh-h----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh-------HHHH
Q 024453 150 AADLDDARGRAARILEVFERSIITNSKA-S----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE-------QEQK 217 (267)
Q Consensus 150 Asd~dDARaRAsRvLEafEksi~~ra~a-a----~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e-------~e~~ 217 (267)
+..+++|....+.+=+.+.+-......- . +.-+.+-|+..+..+.-||-=|..-+.+=++.+.. ++++
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777666655554443 1 44455555555666666665555554443333322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 218 EKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
-.|+.. ++...||++|+|-.+
T Consensus 285 Y~E~~~---mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 285 YAECMA---MLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHH---HHHHHHHHHHHhhCC
Confidence 333333 566678888877543
No 115
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=49.82 E-value=28 Score=35.40 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 184 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
..-|.++..... |.|+-+-+.+|- ||..++-.+. .++..||.||+++|.+-|+
T Consensus 350 V~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n~------k~~~ey~~qL~~~E~~~~~ 402 (521)
T COG5296 350 VACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKNK------KAAMEYQRQLEEIEDNEGA 402 (521)
T ss_pred HHHHHhcCccch-hHHHHHHHHHHH-HHHHHHccCH------HHHHHHHHHHHHHHHhhhc
Confidence 333555555444 888888899987 7766665554 4788999999999999876
No 116
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.69 E-value=53 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv 204 (267)
+.+||..|+.+++.|.+|+.-||+.+
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444443
No 117
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.19 E-value=50 Score=28.96 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
+++.+..+.++|-.+..++.-|+.-...+..+..+++ .++..|+.-+.+..+.|+-.+..|
T Consensus 86 l~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~---~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 86 LYRSKGELAQQLVELNDELQELEKELSEKERRLAELE---AELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------------------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443332 344444444444444444444443
No 118
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.18 E-value=1.3e+02 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 024453 224 LKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 224 Lkql~~qyqEqir~LE~~NYaL 245 (267)
.+..+++++.++.++...+-+.
T Consensus 187 ~~~~~~~~~~~l~~l~~~~~~~ 208 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQIDAA 208 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444444433
No 119
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=49.11 E-value=21 Score=29.78 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 024453 179 KELEHASLKEHLQSLLND 196 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~e 196 (267)
+++||-+||.+++.|+.-
T Consensus 84 LeEENNlLklKievLLDM 101 (108)
T cd07429 84 LEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666655543
No 120
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=49.03 E-value=47 Score=36.29 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 199 ILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 199 iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
-+.|++.||-++.+ ..++.+.+...-...|+..=|+++.||.+---|..||++|..
T Consensus 192 ~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~ 248 (966)
T KOG4286|consen 192 NVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEV 248 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 36799999999998 567788888888899999999999999999999999999975
No 121
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=48.87 E-value=2.6e+02 Score=27.12 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 218 EKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
.++++++.++-.+|++|++.|+.+
T Consensus 82 ~~r~~~~~~i~~~~~~q~~~l~~~ 105 (332)
T TIGR01541 82 RERLDARLQIDRTFRKQQRDLNKA 105 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555443
No 122
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.20 E-value=78 Score=26.03 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.....++..||+.+.+--|.=.+|..-|.-|+-+|.+..+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888889999999998887654
No 123
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.10 E-value=2.3e+02 Score=30.32 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 216 QKEKEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 216 ~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
++..|+.+|+.-+-+-+|+++.||...-.|+++
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999988777765
No 124
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=47.51 E-value=1.3e+02 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHhh
Q 024453 153 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLND 196 (267)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~ra~aa-------~~~En~~LKe~l~~l~~e 196 (267)
++|.+.||..-+.-+|+.+-+|+..+ ..+|...|..+|..|..+
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~ 124 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQ 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 56777888887888888887776663 444555555555554443
No 125
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=47.08 E-value=2.9e+02 Score=27.13 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=75.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 024453 151 ADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (267)
Q Consensus 151 sd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 228 (267)
..++-|+++.......|++.+..-... + -.-....+.+++....+.-...++++.+...|.+.=-.-.-+|-+-+.-+
T Consensus 368 a~~~~A~a~~~~a~~~y~~t~~~a~~eV~~a~~~~~~~~~~~~~~~~~~~~a~~~~~la~~ry~~G~~~~l~vl~aq~~~ 447 (478)
T PRK11459 368 ANLDIAKAQSNLSIASYNKAVVDAVNDVARAASQVETLAEKNQHQQQIERDALRVVGLAQARFNAGIIAGSRVSEAKIPA 447 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 345567777788888899988886666 2 33355567777877777778888888888888863333345555666667
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 024453 229 SQYQDQARNLELRNYALKLHLQRAQES 255 (267)
Q Consensus 229 ~qyqEqir~LE~~NYaL~~HL~qA~~~ 255 (267)
-+.+.++-+++.+...-.+.|-+|..+
T Consensus 448 l~~~~~~~~~~~~~~~~~v~L~~ALGG 474 (478)
T PRK11459 448 LRERANGLLLQGQWLDASIQLTSALGG 474 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777777778888887778888877743
No 126
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.91 E-value=3.4e+02 Score=27.85 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHH
Q 024453 153 LDDARGRAARILEV 166 (267)
Q Consensus 153 ~dDARaRAsRvLEa 166 (267)
+.+|+..|..+++-
T Consensus 27 l~~Ae~eAe~i~ke 40 (514)
T TIGR03319 27 LGSAEELAKRIIEE 40 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777666643
No 127
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.64 E-value=25 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred cCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
..=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 21 ~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 21 AQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346888999999999999999999999999874
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.55 E-value=3.1e+02 Score=29.39 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ---YQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q---yqEqir~LE~~NYaL~~HL~q 251 (267)
..++...+.+++++|..||..||+-+-=+- ++.+....++.+++.-+.+ -.-.|+.++..+|-|..-|+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777776442211 2333333333333332220 011244566666666666553
No 129
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=46.51 E-value=34 Score=25.87 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHH-------HHHhhHHHHHH
Q 024453 180 ELEHASLKEHLQ-------SLLNDNQILKK 202 (267)
Q Consensus 180 ~~En~~LKe~l~-------~l~~eN~iLKR 202 (267)
.+|...||+++. .|..||.+||.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555554 44455555553
No 130
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=45.96 E-value=2.8e+02 Score=26.56 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
|.+|..-+-..+..|-+||..+|+-+---+. ..-++..|...+++.+..++.|+..||-
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999987665553 3456677888888888888888888874
No 131
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.67 E-value=2.2e+02 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
.|.+.|+.-+.+.|++++.||..|-.|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444
No 132
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=45.43 E-value=2.7e+02 Score=26.28 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=35.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 187 KEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 187 Ke~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
=.+|..|+++..-+|+++..||....+.=...- -+.+..+-.+|++-.+..|.
T Consensus 97 ~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t-~~eveK~Kk~Y~~~c~~~e~ 149 (237)
T cd07685 97 LSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTT-QQDIEKLKSQYRSLAKDSAQ 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999988874332211 01344455677776665553
No 133
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=45.38 E-value=41 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
.+++.++|....++.+.||+.+++.|+..---|
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999998664433
No 134
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=45.30 E-value=24 Score=30.12 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcchhHHHHHHHHh
Q 024453 56 PEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 56 ~q~le~aLe~cgndlDaAIksL~ 78 (267)
..=..+||++||.||-.||=+|.
T Consensus 99 reeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 99 REEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 33467899999999999998874
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.08 E-value=2.8e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
++...++..+.++++....|+..--..+-||.+-...+
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555666666777777766666666766665544
No 136
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.77 E-value=1.2e+02 Score=29.41 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qy 231 (267)
|-+.|-.+++.|.+.|.-||+=+ +.+.+|++-|||++...
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa----------~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQA----------SELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 44445556666667666666522 23446677777766554
No 137
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.66 E-value=1.4e+02 Score=30.71 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 024453 220 EVELLKLVISQYQD 233 (267)
Q Consensus 220 E~~~Lkql~~qyqE 233 (267)
|--.|.|++.||||
T Consensus 144 ek~~lEq~leqeqe 157 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQE 157 (552)
T ss_pred hhccHHHHHHHHHH
Confidence 33356689999994
No 138
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=44.32 E-value=2.3e+02 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=36.1
Q ss_pred HHHHHHHH--hhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Q 024453 166 VFERSIIT--NSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 215 (267)
Q Consensus 166 afEksi~~--ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e 215 (267)
-+||+|.. ||.+.|....+|||+++..-++. +|++|+--|..+.|-|
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~---ik~~F~~l~~cL~dRE 202 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK---IKQTFAELQSCLMDRE 202 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 47888864 77777889999999999877653 6888887777775554
No 139
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=44.31 E-value=1e+02 Score=27.94 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 024453 187 KEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQD 233 (267)
Q Consensus 187 Ke~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqE 233 (267)
..++..|+.|--.|.++|+-.|.|+ .+.-+-.-|.+.+|||.
T Consensus 83 eK~~~~LL~EELkLqe~~A~e~~~~-----~~~~lleAkk~asqYQk 124 (176)
T PF06364_consen 83 EKNFVDLLSEELKLQEAVANENQRR-----ADMALLEAKKMASQYQK 124 (176)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3455567777788999999888766 33456677889999994
No 140
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.46 E-value=2.6e+02 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 024453 158 GRAARILEVFERSIITNSKA 177 (267)
Q Consensus 158 aRAsRvLEafEksi~~ra~a 177 (267)
+||-.|-..|-+-...=+..
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~ 103 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADV 103 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56777777776655544433
No 141
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.23 E-value=98 Score=23.16 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
.-+.+|.+.|.+-|.+|.+|+...=.|.-.|+...
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777888888888888888888888888665
No 142
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=43.08 E-value=1.7e+02 Score=23.22 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 192 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 192 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
.|+++|.-||+=+ +.++.|.+..+.=+..|+..+-.|-+==+.||..+-.+..+
T Consensus 2 ~Li~qNk~L~~kL---~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 2 ELIKQNKELKKKL---NDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677787777655 34555666666666677777777777777888888887774
No 143
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=43.03 E-value=53 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 024453 185 SLKEHLQSLLNDNQILKKAVSIQ 207 (267)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAv~IQ 207 (267)
.||+|++.|..+-++|..+|.++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666665543
No 144
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=42.97 E-value=3e+02 Score=29.10 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHHHHHHH-------HHHhhHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 183 HASLKEHLQ-------SLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 183 n~~LKe~l~-------~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
|..||+||. .|.++|.-|+-+.-.-....+++..+ ..++..+|..|.---+-+..|...+-.+.-||+|
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqq 241 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQ 241 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455666665 45667766666654443344444332 2222333333333323355555555555556665
Q ss_pred H
Q 024453 252 A 252 (267)
Q Consensus 252 A 252 (267)
.
T Consensus 242 y 242 (617)
T PF15070_consen 242 Y 242 (617)
T ss_pred H
Confidence 4
No 145
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.95 E-value=3.5e+02 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVS--IQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~--IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~ 237 (267)
+..|...|+.+...+.++-+.+|+.-. .+ +-..+......++.+|++.+..+++++..
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIE-EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555443211 11 11112233345555666666666665554
No 146
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.83 E-value=2.4e+02 Score=25.01 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=64.1
Q ss_pred ChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH
Q 024453 135 DGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ 214 (267)
Q Consensus 135 ~g~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~ 214 (267)
.--.+++.+..++ ++.+.+-..+-+.+|.+-..|... .|...+-++++.|..++.-|+.=+. -.++.
T Consensus 66 ~~~~~~~~l~~~~------~~~~~~i~~l~~~i~~~~~~r~~~---~eR~~~l~~l~~l~~~~~~l~~el~----~~~~~ 132 (188)
T PF03962_consen 66 KRQNKLEKLQKEI------EELEKKIEELEEKIEEAKKGREES---EEREELLEELEELKKELKELKKELE----KYSEN 132 (188)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc
Confidence 3445566666553 456666666666666664443222 3444555566666666666665444 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
+ ...++++++.+..+.+.+-+---|.|+|.-|++.-
T Consensus 133 D--p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 133 D--PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2 35677777888888888888889999999999863
No 147
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=42.68 E-value=3.9e+02 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHhhhHHHHHHHHHHhccCCCCCCC
Q 024453 238 LELRNYALKLHLQRAQESSSIPRQF 262 (267)
Q Consensus 238 LE~~NYaL~~HL~qA~~~~~~~g~f 262 (267)
+.++|-||.--.+ |....++|+++
T Consensus 379 ~~v~~saLdtCik-aKsq~~~p~~r 402 (442)
T PF06637_consen 379 LAVKTSALDTCIK-AKSQPMTPGPR 402 (442)
T ss_pred HHhhhhHHHHHHH-hccCCCCCCCC
Confidence 5678888888888 66666767744
No 148
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=42.15 E-value=21 Score=35.18 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhcchhHHHHHHHHhcccccc
Q 024453 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (267)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (267)
.+||+. .||.+ ++.+..|+.+= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~K----frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQK----FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHHH----hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 668854 57777 55667777664 479999999999999999999999999988733
No 149
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=41.73 E-value=40 Score=31.73 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=42.0
Q ss_pred CChhhhHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhh
Q 024453 134 TDGSKWVDLFVHEMMSA-------ADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLND 196 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~A-------sd~dDARaRAsRvLEafEksi~~ra~a-a~~~En~~LKe~l~~l~~e 196 (267)
..|.=--+..++-|-++ .+.-|=|+ |+|++|++.|.+--.+.. -+.||-+++++|++.+.++
T Consensus 157 ~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~A-Aa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq 226 (244)
T COG1938 157 PSGALLNECLKRGIPALVLLAETFGDRPDPRA-AARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQ 226 (244)
T ss_pred ccHHHHHHHHHcCCCeEEEeccccCCCCChHH-HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555433 34446665 789999999998887777 4888888888887766543
No 150
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.30 E-value=4.6e+02 Score=29.49 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 217 KEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
..+++..+...+.+.+++.......--.+...+++
T Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 501 (1201)
T PF12128_consen 467 EKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQE 501 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444444444444333
No 151
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=41.22 E-value=3.5e+02 Score=26.42 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
+.+.-...+..+++|..|-...|..+.+==+|..+......-+++||.-...+.+||.-||..-|==.+.-.+|
T Consensus 255 ~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrA 328 (336)
T PF05055_consen 255 LIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRA 328 (336)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999999999998887777766555666789999999999999999999988766655554
No 152
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.19 E-value=3.7e+02 Score=26.60 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=43.0
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h
Q 024453 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILKKAVSIQHE-R 210 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~a--a~~~En~~LKe~l~~l~~eN~iLKRAv~IQhe-R 210 (267)
..+.+|.+.| .++.+=.-.+.+......-+...++-+..-... .++.+...++..+..+..+. ....+ =
T Consensus 147 ~~~~er~~il-~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~-------~~~i~~l 218 (562)
T PHA02562 147 LSAPARRKLV-EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN-------GENIARK 218 (562)
T ss_pred CChHhHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHH
Confidence 4567786554 446664444444444444444444433332222 13333333333333333322 22111 2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 211 HLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 211 ~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
.++++....+..+++..+.+++++|-.|
T Consensus 219 ~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 219 QNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245555555555555555555555555
No 153
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.02 E-value=4.8e+02 Score=28.15 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=6.4
Q ss_pred HHHHHHHHhhHHHHHHH
Q 024453 187 KEHLQSLLNDNQILKKA 203 (267)
Q Consensus 187 Ke~l~~l~~eN~iLKRA 203 (267)
+++++.+.+|..-+|+.
T Consensus 531 ~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKE 547 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 154
>PF15463 ECM11: Extracellular mutant protein 11
Probab=40.97 E-value=1e+02 Score=25.97 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=43.3
Q ss_pred CChhhhHHH---HHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh
Q 024453 134 TDGSKWVDL---FVHEMM-SAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLN 195 (267)
Q Consensus 134 ~~g~eWVEl---~V~EM~-~Asd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~ 195 (267)
.+=.+|.+. |+.+.. -..-|.++|.-=.++-+.||+.|..|+.+ +..+-..|.++|+.+..
T Consensus 69 ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 69 LSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556677764 555544 34567888888888999999999999988 55555566666665543
No 155
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.51 E-value=3.7e+02 Score=26.41 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLN-----DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEq 234 (267)
+..|+..+.+|++.++. |..+++|-+.+-|+.. ..+.+|++++...++.
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK-------~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKK-------AKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHhhcc
Confidence 34455555566665553 5567788888887655 4444555555555543
No 156
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=39.91 E-value=2.2e+02 Score=30.72 Aligned_cols=66 Identities=27% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 157 RGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 157 RaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 236 (267)
|-||+--+|..|--+... .++-|.+.+...++.+ +++...+++|+.+||-.++|.|-|.+
T Consensus 86 RI~~sVs~EL~ele~krq---el~seI~~~n~kiEel-----------------k~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQ---ELNSEIEEINTKIEEL-----------------KRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH-----------------HHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 566666666655432211 2555555555555443 33445678999999999999999999
Q ss_pred HHHhhh
Q 024453 237 NLELRN 242 (267)
Q Consensus 237 ~LE~~N 242 (267)
.|-+.|
T Consensus 146 El~~~n 151 (907)
T KOG2264|consen 146 ELRETN 151 (907)
T ss_pred HHHhhc
Confidence 886655
No 157
>PF14645 Chibby: Chibby family
Probab=39.74 E-value=34 Score=28.46 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~I 206 (267)
...|+..|+++...|..||+.||-=+-|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999854443
No 158
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.72 E-value=3.6e+02 Score=26.06 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 024453 157 RGRAARILEVFERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 231 (267)
Q Consensus 157 RaRAsRvLEafEksi~~ra~a-----a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qy 231 (267)
|..=+-|=|-|-|+++..|-= ++.-+...||..|+.+.....-|+|=+. +..++++-..+....|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667778888998876643 1666777777777777777777766652 33344444444444555555566
Q ss_pred HHHHHHHH
Q 024453 232 QDQARNLE 239 (267)
Q Consensus 232 qEqir~LE 239 (267)
+++|+..+
T Consensus 160 re~L~~rd 167 (302)
T PF09738_consen 160 REQLKQRD 167 (302)
T ss_pred HHHHHHHH
Confidence 66665543
No 159
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.79 E-value=2.2e+02 Score=23.47 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQAR 236 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir 236 (267)
.|+..+++-+..-.+|=+
T Consensus 105 ~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 160
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=38.53 E-value=8e+02 Score=29.84 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=60.8
Q ss_pred CChhhhHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 024453 134 TDGSKWVDLFVHEMMS-AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~-Asd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR 210 (267)
+.-.+|--.|..+... ...++++|.+...=|+..+..+..-... + +.+=...|...++.+.-+..-...+++-....
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k 1436 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKK 1436 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899988888876 8899999999999999999998875555 2 44444555666666666666666666666665
Q ss_pred hHhHHH
Q 024453 211 HLEQEQ 216 (267)
Q Consensus 211 ~~e~e~ 216 (267)
++-++.
T Consensus 1437 ~k~f~k 1442 (1930)
T KOG0161|consen 1437 QKRFEK 1442 (1930)
T ss_pred HHHHHH
Confidence 555553
No 161
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.24 E-value=4.6e+02 Score=29.82 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 179 KELEHASLKEHLQSLLND-NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~e-N~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
+++|++.|.+++..|-.| |.+...+..+|+++.. ...+..+|+.-+.+|+++|+.|..+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~----i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEH----IEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555433 4455556667765532 3356778888999999999999864
No 162
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=38.18 E-value=13 Score=26.57 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhccccc
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (267)
+|.++--.+.|+++|=|++.||..+.+|.-.
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 6778888999999999999999999987643
No 163
>PRK00106 hypothetical protein; Provisional
Probab=38.01 E-value=4.9e+02 Score=27.15 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHH
Q 024453 154 DDARGRAARILE 165 (267)
Q Consensus 154 dDARaRAsRvLE 165 (267)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 467777776663
No 164
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.63 E-value=3.4e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.190 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
.+++....+.+.+.+.++...|+.
T Consensus 202 ~ek~~~~~~~k~e~~e~e~~~l~e 225 (297)
T PF02841_consen 202 KEKEIEEEQAKAEAAEKEKEKLEE 225 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 165
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=37.47 E-value=2.4e+02 Score=25.93 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE--QKEKEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e--~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
++.||..|++-...|-.+.+==|+ |+-.+.|.--|- .+.+||..-.|.+.+.+.....|-..|..|+
T Consensus 67 LqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 67 LQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677888888877777777776677 788888877665 4788888888888888888888888887775
No 166
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.42 E-value=1.6e+02 Score=21.27 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 217 KEKEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
...++..|..-..++.+++..|+..+..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555554443
No 167
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=36.75 E-value=3.2e+02 Score=27.26 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 024453 179 KELEHASLKEHLQSLLND 196 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~e 196 (267)
.+.++..|+.++..+..+
T Consensus 65 ~~~~~~~L~~ql~~~~~~ 82 (390)
T PRK10920 65 QTATNDALANQLTALQKA 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777776555
No 168
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.60 E-value=4.2e+02 Score=25.98 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 024453 137 SKWVDLFVHEMMS----AADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHERH 211 (267)
Q Consensus 137 ~eWVEl~V~EM~~----Asd~dDARaRAsRvLEafEksi~~ra~a-a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~ 211 (267)
.+=+|.|+.++.. -.+++++|+==..-++++|++..+..+. ++. +-.+.+++--..||+++..+=+..
T Consensus 207 ~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efa-------k~~G~lvna~m~lr~~~qe~~e~~ 279 (320)
T TIGR01834 207 YKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENA-------KVHGKFINALMRLRIQQQEIVEAL 279 (320)
T ss_pred HHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555543 2455555555555566666655554333 111 122233333333444433332221
Q ss_pred ---------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 212 ---------LEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 212 ---------~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
.|.++..+++.+||.-+..-..+|++||.+
T Consensus 280 L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 280 LKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 244555555555555555555556665543
No 169
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.59 E-value=2.8e+02 Score=27.33 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERH---LEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRAv~IQheR~---~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
++...|++++..+..+-.-|++.+....... +.-.++...++.+++...++.++++.|+..-..|.--|+..
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455444444444444422222111 01123344555555555666666666665555555555544
No 170
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.53 E-value=3.4e+02 Score=24.89 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 207 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
||+=++|-.....|.+..+..+.+-|.||+.||..
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555556666666666543
No 171
>PRK04406 hypothetical protein; Provisional
Probab=36.43 E-value=2e+02 Score=22.19 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.-+..|.+.|.+-|.+|..|+..--.|.-.|+.+..
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566667777777777777776666667765553
No 172
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.37 E-value=2e+02 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024453 218 EKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.-++..|++-+.+|+..|+.++.
T Consensus 49 Kve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 49 KVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666655554
No 173
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.25 E-value=1.5e+02 Score=24.61 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
....+++..||+.+.+--|.=.+|+.-|--|+-+|.+.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888888888888888888865
No 174
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.18 E-value=95 Score=29.27 Aligned_cols=16 Identities=38% Similarity=0.376 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVI 228 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~ 228 (267)
+.+...+|.++||.++
T Consensus 91 ~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 91 EVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444444443
No 175
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=36.12 E-value=27 Score=30.55 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERH----LEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~----~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
+..|...|+.++.+|..||.-|.--.+--..++ .+......++.+|+-++..|++-+....
T Consensus 20 l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~ 84 (181)
T PF09311_consen 20 LEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESR 84 (181)
T ss_dssp HHHCCHHHHT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccc
Confidence 777889999999999999999987766544444 2333467888899999999887665443
No 176
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=35.75 E-value=28 Score=34.26 Aligned_cols=41 Identities=15% Similarity=-0.018 Sum_probs=30.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
.++|.+||.-= +..---..++|++||+|++-|-+-|+.=..
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~aq 87 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKAQ 87 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46677887542 233345889999999999999999987433
No 177
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.52 E-value=2e+02 Score=21.90 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+.-|+..|++++..+.+.+.+-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776665543
No 178
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=35.34 E-value=1.3e+02 Score=29.29 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVS-IQHER 210 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~-IQheR 210 (267)
+.++|..||+|+..|-+|..-||.+|. .+|.|
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999984 44444
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.89 E-value=3.3e+02 Score=24.25 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024453 180 ELEHASLKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 180 ~~En~~LKe~l~~l~~eN~iLKRAv~ 205 (267)
.+++...|+++..+..++.-.+..+.
T Consensus 83 ~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 83 RKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 180
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.77 E-value=4.2e+02 Score=26.55 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=6.6
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 024453 233 DQARNLELRNYALKLHLQ 250 (267)
Q Consensus 233 Eqir~LE~~NYaL~~HL~ 250 (267)
.+++.|+..--.|...|.
T Consensus 152 ~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 152 RRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 181
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=34.36 E-value=1.5e+02 Score=22.44 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHH
Q 024453 184 ASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E~~~Lkql~~ 229 (267)
..|++|+..+.+-..-| .+-+|| ||.+-.+.-..|++.+.+-+-
T Consensus 4 ~~L~~QLd~I~~~K~~l--~ik~~H~Ekl~kitK~p~El~~i~~kl~ 48 (62)
T PF06034_consen 4 RSLTQQLDEINQMKRQL--TIKSQHWEKLKKITKNPKELQEIEKKLQ 48 (62)
T ss_pred ccHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34777777776554432 456778 888777766777777555443
No 182
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.25 E-value=1.3e+02 Score=28.00 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 203 AVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 203 Av~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
.|.-|-.|.+ -..+..+|+.++++.+...+.+|.+|...|--|---.|
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655 33455678888888888888888888888876644333
No 183
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.02 E-value=61 Score=27.95 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
+.+..+++++.|+.....|.+-+.+|+
T Consensus 18 qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 18 QVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888887777
No 184
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=33.90 E-value=3.1e+02 Score=24.66 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024453 223 LLKLVISQYQDQARNLE 239 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE 239 (267)
+++..+.++++.|...+
T Consensus 157 e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334555555555444
No 185
>PRK09458 pspB phage shock protein B; Provisional
Probab=33.31 E-value=84 Score=24.77 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 217 KEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
-.+.+++|-.....-+|+|.|||.
T Consensus 40 d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 40 EQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899999999996
No 186
>PRK00846 hypothetical protein; Provisional
Probab=33.08 E-value=2.4e+02 Score=22.15 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 220 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 220 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
=+..|.+.|.+.|.+|..|...--.|.-+|+.++.++
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666788888888888888778888999777544
No 187
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.78 E-value=1e+02 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 212 LEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 212 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
+-|++..+||..|-+--..-.|++-.||+..|++-
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888877777778889999999999984
No 188
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.76 E-value=3e+02 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 215 EQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
....+++++|+..+.+.++++++.
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444443
No 189
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.30 E-value=2.3e+02 Score=24.98 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 204 v~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
|.|=-.=.+||+...+|+.++|..+.++-+++-.||...-.-+..|...-
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433344588888899999999999999999999998888888876543
No 190
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.12 E-value=8e+02 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 024453 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLK 225 (267)
Q Consensus 190 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lk 225 (267)
+++-..+|..+.|-+..||.+..++++..+..+.|+
T Consensus 459 ~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 459 LSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777777777766443333333
No 191
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.11 E-value=4e+02 Score=24.56 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQIL----KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iL----KRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
|+..||.++..+-.+.... ...-...+.+..+.+....|++..+.-...-+++|-.||..+-.|+--+..+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 6666777765544433322 2223345677789999999999999999999999999999999888877765
No 192
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=32.11 E-value=91 Score=26.53 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHH-------HHHhhHHHHHHH
Q 024453 179 KELEHASLKEHLQ-------SLLNDNQILKKA 203 (267)
Q Consensus 179 ~~~En~~LKe~l~-------~l~~eN~iLKRA 203 (267)
..+|...||+|+. +|-+||.+||+-
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666554 455566666653
No 193
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=32.00 E-value=2.9e+02 Score=25.48 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=30.8
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHhhhh-------h--hhHHHHHHHHHHHHHHh
Q 024453 148 MSAADLDDARGRAARILEVFERSIITNSKA-------S--KELEHASLKEHLQSLLN 195 (267)
Q Consensus 148 ~~Asd~dDARaRAsRvLEafEksi~~ra~a-------a--~~~En~~LKe~l~~l~~ 195 (267)
..++.+-|||.|=.-|.+.=|++...--.+ + +..+...|+++.+++.+
T Consensus 43 ~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~ 99 (214)
T PRK11166 43 EAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFA 99 (214)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 477889999999777777777665432222 1 45556666666665554
No 194
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.82 E-value=3.3e+02 Score=23.31 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAV-----SIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv-----~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
++-||..|.++++.=-.|=.-||+.. .+.|.|-+-. ....+...+++-+...++.+..+...-|.+....
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~-~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH-FLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688888888876666655565544 3456665533 3456666777777777777777776666665543
No 195
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.81 E-value=98 Score=24.55 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 204 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 204 v~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.+=+..|+++++.+-.|... .++=.=||.+-.+.--|..-|+....
T Consensus 17 iae~Q~rlK~Le~qk~E~EN-----~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 17 IAELQARLKELEAQKTEAEN-----LEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33344466666665555444 23445567777777788888887653
No 196
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=31.40 E-value=83 Score=32.43 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh----------------HH----HHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE----------------QE----QKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e----------------~e----~~~~E~~~Lkql~~qyqEqir~L 238 (267)
-..+++.|+.||..|.++-+-|+..++-|+.---- .. --+.+++++||.|+-.+=++..|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 55688999999999999999999999888752211 00 01678888888898888888887
Q ss_pred Hhh
Q 024453 239 ELR 241 (267)
Q Consensus 239 E~~ 241 (267)
|..
T Consensus 103 ~da 105 (514)
T PF11336_consen 103 EDA 105 (514)
T ss_pred hhH
Confidence 754
No 197
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.39 E-value=2.9e+02 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
.+.+..|..--..+..+|.+|+..++.|+-.+.+..
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444455555555555555555555533
No 198
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.38 E-value=2.4e+02 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 255 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 255 (267)
.-+..|...|.+-|.+|.+|+..-=.|.-.|+....+
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455666788888888888887766676677765543
No 199
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=31.10 E-value=35 Score=32.97 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=24.0
Q ss_pred HHHHHhhcchhHHHHHHHHhccccccchh
Q 024453 59 VKSVLGEHDNKIEDAIDRLRVLSFSNISE 87 (267)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa~~ 87 (267)
-.+||++++.|||.||+-|..--+..+..
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA~K 51 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKAAK 51 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhhhh
Confidence 47899999999999999999965555544
No 200
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.04 E-value=4.8e+02 Score=26.44 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHh---hhh-hhh-----HHHHHHHHHHHHHHhhHHHHHHHH
Q 024453 152 DLDDARGRAARILEVFERSIITN---SKA-SKE-----LEHASLKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 152 d~dDARaRAsRvLEafEksi~~r---a~a-a~~-----~En~~LKe~l~~l~~eN~iLKRAv 204 (267)
-+.|=|+||.|+|+.=||-|..= +.. .+. -|...||.+.+-+..|+..|.+-+
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999888751 222 222 246677888888888888888776
No 201
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.84 E-value=7.1e+02 Score=26.89 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.4
Q ss_pred CCCCCH
Q 024453 51 FPDVDP 56 (267)
Q Consensus 51 FP~md~ 56 (267)
|-+.||
T Consensus 417 ~~GtDp 422 (782)
T PRK00409 417 GAGTDP 422 (782)
T ss_pred CCCCCH
Confidence 334443
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.74 E-value=3.5e+02 Score=25.06 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=4.7
Q ss_pred HHHHHHHHhhh
Q 024453 166 VFERSIITNSK 176 (267)
Q Consensus 166 afEksi~~ra~ 176 (267)
.+|..+..+..
T Consensus 44 ~le~~~~~~~~ 54 (263)
T PRK10803 44 QLERISNAHSQ 54 (263)
T ss_pred HHHHHHHhhhH
Confidence 34444444443
No 203
>PHA02047 phage lambda Rz1-like protein
Probab=30.70 E-value=2.1e+02 Score=23.85 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 210 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR 210 (267)
-|+|.+.|+.||+.+...-.-+-+.|.--|.|
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999987765555555555554444
No 204
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=30.70 E-value=96 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhc
Q 024453 220 EVELLKLVISQYQDQARNLELRNYALK-LHLQRAQE 254 (267)
Q Consensus 220 E~~~Lkql~~qyqEqir~LE~~NYaL~-~HL~qA~~ 254 (267)
+|.+|-+.-.+-++++.+||...|.+- -+|.....
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~ 38 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSP 38 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 444444455556677777777777773 34552333
No 205
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.68 E-value=99 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 217 KEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
-.+.+++|-+....-+|+|.+||.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888899999985
No 206
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.65 E-value=2.5e+02 Score=30.41 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
|..-||+||..+-+|+..|-..+ ++.+..+.+-+..+...+++|..|-.+.-||.-
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L----------~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNL----------QESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66779999999999999998766 445566667777777777888887766666654
No 207
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=30.41 E-value=3.9e+02 Score=27.49 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 184 ASLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
..|+++++.+.+|+..-|+-+.|--+-.+ ++++...|+++|+.-=.+--.|++.||.++|-|---|+.
T Consensus 146 ~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 146 NKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888877555544 456677777777776666667788888888877666553
No 208
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.10 E-value=84 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024453 223 LLKLVISQYQDQARNLEL 240 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~ 240 (267)
.|||.|.--|+||+.|+.
T Consensus 3 aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666777776664
No 209
>PRK04325 hypothetical protein; Provisional
Probab=30.09 E-value=2.5e+02 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
.-+..|...|.+-|.+|.+|+..-=.|.-.|+...
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777888888888888887767766777654
No 210
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.08 E-value=3.2e+02 Score=27.43 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=32.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 189 HLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 189 ~l~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
.++.+..|-.-||..++-=-||.. .+.++.+++++ .++.||-+|-.||
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 344555666677777655555554 34566777776 8888888888888
No 211
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.02 E-value=65 Score=27.22 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+..|...||++++.|+.||..|.
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 77899999999999999999874
No 212
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=29.89 E-value=2.7e+02 Score=21.79 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 024453 227 VISQYQDQARNLE 239 (267)
Q Consensus 227 l~~qyqEqir~LE 239 (267)
+-.+|++.|.+|-
T Consensus 58 mK~~YEeEI~rLr 70 (79)
T PF08581_consen 58 MKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4457777777764
No 213
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.85 E-value=1.4e+02 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
.=+||.-|.+.++.+-.|+..||
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688889888988888888887
No 214
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=29.79 E-value=1.4e+02 Score=27.39 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024453 223 LLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~~N 242 (267)
.||...+-|-||+-+||.||
T Consensus 98 ~L~k~daf~Ke~larlEen~ 117 (192)
T KOG4083|consen 98 ELKKQDAFYKEQLARLEENS 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44446777777777777776
No 215
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.59 E-value=6.8e+02 Score=26.22 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLL 194 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~ 194 (267)
.|.....++.|++.+.
T Consensus 314 ~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 314 NHPRVVAAKSSLADLD 329 (754)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444444444444433
No 216
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.28 E-value=1.6e+02 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKA 203 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRA 203 (267)
+..+...||.+...+..+|..|+.-
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777653
No 217
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=28.73 E-value=2.9e+02 Score=25.33 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhh-hhhH--HHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHH
Q 024453 162 RILEVFERSIITNSKA-SKEL--EHASLKEHLQSLLND--NQILKKAVSIQHERHLE-QEQKEKEVELLKLVISQYQDQ 234 (267)
Q Consensus 162 RvLEafEksi~~ra~a-a~~~--En~~LKe~l~~l~~e--N~iLKRAv~IQheR~~e-~e~~~~E~~~Lkql~~qyqEq 234 (267)
.+.+.||.++..+..- .+++ .+..+...+++++++ +.+-.-|.+|++.|.-. .....++++.+++.+..|+++
T Consensus 180 ~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 180 EAVDLFERALASHYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHhccccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3556778777776543 2222 134444455555544 23444588888766654 344677888888888888777
No 218
>PRK02119 hypothetical protein; Provisional
Probab=28.69 E-value=2.7e+02 Score=21.29 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.-+..|...|.+=|.+|..|+..--.|.-+|+....
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566667777788888888777777777776543
No 219
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.63 E-value=1.9e+02 Score=29.98 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHH--HhhHHH------------HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 179 KELEHASLKEHLQSL--LNDNQI------------LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 179 ~~~En~~LKe~l~~l--~~eN~i------------LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
+|||...+.+++.+- ..+--+ -.+-++-=|.=-.+.-++-.+--.+++.+..|++||-.-|..||-
T Consensus 415 Lqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l 494 (521)
T KOG1937|consen 415 LQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL 494 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH
Confidence 677777777776641 111111 123344556666666777777778888888888888888888887
Q ss_pred HHHHHH
Q 024453 245 LKLHLQ 250 (267)
Q Consensus 245 L~~HL~ 250 (267)
.++-+-
T Consensus 495 ~slEkl 500 (521)
T KOG1937|consen 495 KSLEKL 500 (521)
T ss_pred hhHHHH
Confidence 666543
No 220
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.61 E-value=9.3e+02 Score=27.55 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=38.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 203 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 203 Av~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
|.+-=.+..++|.....+....+..++.|++.|+....++-.++--
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k 317 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK 317 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555667888899999999999999999999999999998887743
No 221
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=28.58 E-value=3e+02 Score=22.11 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024453 216 QKEKEVELLKLVISQYQDQARNLELRNY 243 (267)
Q Consensus 216 ~~~~E~~~Lkql~~qyqEqir~LE~~NY 243 (267)
....|+..|+..+..|+++++.|-..|.
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 3447788888888888888888876653
No 222
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.58 E-value=2.2e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 248 (267)
+++..++.-+...++.++.||.++-++...
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555554444
No 223
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.52 E-value=1.4e+02 Score=23.06 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 235 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi 235 (267)
+-|-+.-|....++++ ++++..++++..|.+++
T Consensus 50 i~~s~eeq~~~i~~Le---~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELE---EQIRKKREVLQKFKERV 82 (83)
T ss_pred ccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 4444554444443333 44445555666666553
No 224
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=28.46 E-value=1.9e+02 Score=22.87 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=24.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 024453 171 IITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQ 207 (267)
Q Consensus 171 i~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQ 207 (267)
|.++-.....++...|+..+..+..+|.-|...|.-|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444456667777888888888888877766544
No 225
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.43 E-value=1e+03 Score=27.99 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhHhH
Q 024453 200 LKKAVSIQHERHLEQ 214 (267)
Q Consensus 200 LKRAv~IQheR~~e~ 214 (267)
+..++..+..+...|
T Consensus 402 lqqel~elQ~el~q~ 416 (1486)
T PRK04863 402 YQQALDVQQTRAIQY 416 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 226
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.10 E-value=3.8e+02 Score=22.81 Aligned_cols=63 Identities=25% Similarity=0.221 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
+..++..+-++|..|.+-|..|-.=|-.-.++.++......+.....+.+.+++.+|..||..
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 334444444444445555554444444444444444444444433333344444444444433
No 227
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.05 E-value=1.2e+02 Score=23.35 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 212 LEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 212 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
-|+|...+.+..+++-+..-+.+|..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777777777777777777764
No 228
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=6.2e+02 Score=25.20 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA---------RNLELRNYALKLHL 249 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi---------r~LE~~NYaL~~HL 249 (267)
..++.+.+.+++..+++-....|.++.-=..-.+-.+...+++...+..+.++..+. +..|..++-+.-+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 467788889999999998888888876443333344556666666666666666666 44455555555444
Q ss_pred HH
Q 024453 250 QR 251 (267)
Q Consensus 250 ~q 251 (267)
.+
T Consensus 434 ~~ 435 (503)
T KOG2273|consen 434 NE 435 (503)
T ss_pred HH
Confidence 43
No 229
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.72 E-value=9e+02 Score=27.09 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH
Q 024453 137 SKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ 214 (267)
Q Consensus 137 ~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~ 214 (267)
..|-+-+..-+..-..+.--.....+-++-++......... . +..+...+..++..+..+..-++..+.-..+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 455 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL--- 455 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------------HHHHHHhccCCCCCCCCC
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALK----------------LHLQRAQESSSIPRQFHP 264 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~----------------~HL~qA~~~~~~~g~f~P 264 (267)
+....++.++++-+.++++.++.++..--.+. .....+.... ++|.+.|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~ 520 (1163)
T COG1196 456 EELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGP 520 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccch
No 230
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.69 E-value=2.4e+02 Score=20.33 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
.......|..++..|..+|..|+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777764
No 231
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.61 E-value=4.5e+02 Score=27.71 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHhcCCCchHHHHHHH----HHHHHHHHHHHHhhhh-----h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh
Q 024453 144 VHEMMSAADLDDARGRAA----RILEVFERSIITNSKA-----S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE 213 (267)
Q Consensus 144 V~EM~~Asd~dDARaRAs----RvLEafEksi~~ra~a-----a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e 213 (267)
+.+|..+.-.-|-|-||. -.++++++........ . ++-|.+.-.++++.|....--||.-|.-|---..+
T Consensus 290 a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 290 AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 344555555555555553 3566666666554333 1 66677777778888888888899888888777778
Q ss_pred HHHHHHHHHHHHHHHH
Q 024453 214 QEQKEKEVELLKLVIS 229 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~ 229 (267)
++.+++|..+|-.-++
T Consensus 370 fe~mn~Ere~L~reL~ 385 (622)
T COG5185 370 FELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887765543
No 232
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=27.33 E-value=55 Score=29.56 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.9
Q ss_pred HHHHHHHhhcchhHHHHHHHHhccc
Q 024453 57 EVVKSVLGEHDNKIEDAIDRLRVLS 81 (267)
Q Consensus 57 q~le~aLe~cgndlDaAIksL~~L~ 81 (267)
+-|.++|++||.+|.+..++||-.+
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4588999999999999999998653
No 233
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.29 E-value=6.9e+02 Score=26.20 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------hhhh-hhhHHHHHHHHHHHHHHhhHHHH
Q 024453 155 DARGRAARILEVFERSIIT--------NSKA-SKELEHASLKEHLQSLLNDNQIL 200 (267)
Q Consensus 155 DARaRAsRvLEafEksi~~--------ra~a-a~~~En~~LKe~l~~l~~eN~iL 200 (267)
|-..|=..|-.-|++=|.+ .+.+ .++.|...|..+++...+++.-+
T Consensus 406 E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l 460 (518)
T PF10212_consen 406 EEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL 460 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544 3444 38888888888887666655443
No 234
>PHA03162 hypothetical protein; Provisional
Probab=27.11 E-value=1e+02 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCC
Q 024453 228 ISQYQDQARNLELRNYALKLHLQRAQESSSIPRQ 261 (267)
Q Consensus 228 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~ 261 (267)
+++.+.+|-+|+..|-+|.--|++......+||-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d 48 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGD 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 4566677888999999999999887766666664
No 235
>PRK09039 hypothetical protein; Validated
Probab=27.10 E-value=5.8e+02 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 218 EKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
++|+..||..++.-+..|..+|...
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 236
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.90 E-value=3.3e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024453 220 EVELLKLVISQYQDQARN 237 (267)
Q Consensus 220 E~~~Lkql~~qyqEqir~ 237 (267)
++..++..+...+.++..
T Consensus 110 ~~~~~~~~l~~~~~~l~~ 127 (322)
T TIGR01730 110 AVEAAQADLEAAKASLAS 127 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 237
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=26.82 E-value=4.6e+02 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024453 214 QEQKEKEVELLKLVISQYQDQA 235 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqi 235 (267)
..+..+|..+|+..+..||--+
T Consensus 72 i~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 72 IRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778877777666433
No 238
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.69 E-value=4.5e+02 Score=25.49 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHH------------------HHHHHHh
Q 024453 136 GSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKE------------------HLQSLLN 195 (267)
Q Consensus 136 g~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe------------------~l~~l~~ 195 (267)
=.+|.+-+ ++ |+...+.+..+++..-|.+..+.|...-.. . ++.++..++. .+....+
T Consensus 57 ld~~~~kl-~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~ 134 (301)
T PF06120_consen 57 LDELKEKL-KE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATR 134 (301)
T ss_pred hHHHHHHH-Hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 34455543 33 466677777788777777777777663322 1 2222211111 2234566
Q ss_pred hHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 024453 196 DNQILKKAVSIQHERHLEQEQKEKEVE 222 (267)
Q Consensus 196 eN~iLKRAv~IQheR~~e~e~~~~E~~ 222 (267)
+...+.+.++..++|...-..+..+.+
T Consensus 135 ~la~~t~~L~~~~~~l~q~~~k~~~~q 161 (301)
T PF06120_consen 135 KLAEATRELAVAQERLEQMQSKASETQ 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777665555544444
No 239
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=26.67 E-value=6e+02 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024453 218 EKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.+++..+.+-+..-+.++.+|+.
T Consensus 99 ~~~l~~~~~~l~~l~~~~~~l~~ 121 (372)
T PF04375_consen 99 QQELAQLQQQLAELQQQLAALSQ 121 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666677766654
No 240
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=26.47 E-value=4.3e+02 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 203 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 203 Av~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
.-.++|.|+- .+. ..++++|+...+|..||-.|
T Consensus 528 ~~~~a~q~~l--~~q-~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 528 LKEEAKQRQL--QEQ-KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3345554442 222 77888888999999998766
No 241
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.46 E-value=3.4e+02 Score=23.46 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 236 (267)
.|.++..+..|..-||--+.=-..-.+++.....-+..|+..+..||....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333344444445555555544
No 242
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.40 E-value=6.9e+02 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 024453 224 LKLVISQYQDQAR-NLELRNYALKLHLQRA 252 (267)
Q Consensus 224 Lkql~~qyqEqir-~LE~~NYaL~~HL~qA 252 (267)
..++...|+++++ .|+.+.-++.-||+++
T Consensus 320 ~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~ 349 (582)
T PF09731_consen 320 REELEEKYEEELRQELKRQEEAHEEHLKNE 349 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346667888887 7888888888888876
No 243
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.34 E-value=4.6e+02 Score=23.41 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024453 227 VISQYQDQA 235 (267)
Q Consensus 227 l~~qyqEqi 235 (267)
.+...+.++
T Consensus 110 ~~~~~~~~l 118 (322)
T TIGR01730 110 AVEAAQADL 118 (322)
T ss_pred HHHHHHHHH
Confidence 333333333
No 244
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.19 E-value=4.8e+02 Score=23.41 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHHHHH---HHHhhhhhhhHHHHHHH----HHHHHHHhhHHHHHHHHH
Q 024453 162 RILEVFERS---IITNSKASKELEHASLK----EHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 162 RvLEafEks---i~~ra~aa~~~En~~LK----e~l~~l~~eN~iLKRAv~ 205 (267)
.=|.+||-. +..-++|.-..-|..++ +++..+.+++.-+||+..
T Consensus 29 tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~ 79 (170)
T PRK13923 29 TQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLG 79 (170)
T ss_pred hHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccc
Confidence 346677733 33223331222344444 788899999999999843
No 245
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.05 E-value=6.3e+02 Score=24.70 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHH--------------------
Q 024453 153 LDDARGRAARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSI-------------------- 206 (267)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~ra~a-a-----~~~En~~LKe~l~~l~~eN~iLKRAv~I-------------------- 206 (267)
++++..+..+.-.---+-+..|... . +..+...+.+.++.|..+...|.+|+..
T Consensus 30 ~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~ 109 (384)
T PF03148_consen 30 INETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPG 109 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCC
Q ss_pred --------HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 207 --------QHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 207 --------QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
..+-.||.+-...--.-|++.+.+..|||+.|...-|-|.+=++
T Consensus 110 ~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~ 161 (384)
T PF03148_consen 110 IDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLS 161 (384)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 246
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=25.77 E-value=3.1e+02 Score=21.10 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 024453 198 QILKKAVSIQHERHLEQ-EQKEKEVELLKLVISQYQDQARNLELRN-YALKLHLQR 251 (267)
Q Consensus 198 ~iLKRAv~IQheR~~e~-e~~~~E~~~Lkql~~qyqEqir~LE~~N-YaL~~HL~q 251 (267)
..+|-.+.+........ .+...-+..|.+.+.+....++.+=.-| |+|.+=..|
T Consensus 54 ~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 54 RWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 45666666666666666 7788889999999999888888888888 999986654
No 247
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=25.75 E-value=3e+02 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
.+.+..+|++.+||=.-|..||.+++.+
T Consensus 88 ~Qrlk~iK~l~eqflK~le~le~~~~~~ 115 (130)
T PF04803_consen 88 NQRLKAIKELHEQFLKSLEDLEKSHDNQ 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999999998874
No 248
>PHA03162 hypothetical protein; Provisional
Probab=25.72 E-value=3e+02 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQ 207 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQ 207 (267)
.+.|-.+|.+|.-||.-||+-+.-+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888887543
No 249
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.69 E-value=4.5e+02 Score=22.93 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLN----DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~----eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
-..|.+-||+...-|.+ .|==.|| |.-+|+-.++.-...+||.+|++-+++.+-.+..++..-|+|.---
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KR-v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKR-VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45577778887765553 2222333 4445555555556678888888888877777777777666664433
No 250
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.64 E-value=1.4e+02 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024453 218 EKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.+.+++|-.....-+|+|.|||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888999999995
No 251
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.57 E-value=6.5e+02 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=23.1
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Q 024453 134 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSII 172 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~ 172 (267)
-.|.-.-|+|-+|..-.-...-|-+|+--++|+ ||...
T Consensus 74 ~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk 111 (338)
T KOG3647|consen 74 QRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLK 111 (338)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHH
Confidence 567777777777766665566666666555553 44433
No 252
>PLN03025 replication factor C subunit; Provisional
Probab=25.55 E-value=76 Score=29.46 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=37.6
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~~~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|.||- .++|.+ +.++..|..++ =.++++.++..++.||.|+-.||..|..
T Consensus 147 ~SRc~----~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~ 203 (319)
T PLN03025 147 QSRCA----IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQA 203 (319)
T ss_pred HHhhh----cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55673 466666 44556666553 3578999999999999999999998863
No 253
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=25.52 E-value=66 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.9
Q ss_pred CHHHHHHHHhhcc--hhHHHHHHHHhcc
Q 024453 55 DPEVVKSVLGEHD--NKIEDAIDRLRVL 80 (267)
Q Consensus 55 d~q~le~aLe~cg--ndlDaAIksL~~L 80 (267)
+|.|+|.+|.+|- |||-.||+-|--+
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5899999999995 8999999988765
No 254
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=25.49 E-value=3.1e+02 Score=29.73 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 159 RAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 159 RAsRvLEafEksi~~ra~a-a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
|+--++-++--.|.+.... +-+|.++.++++++.|..| +|+ .|-.=|+++|.+..|...||+++-
T Consensus 203 k~~~~~A~L~~~~~~~~ts~E~~K~~vs~~e~i~~LQeE--~l~----tQ~kYQreLErlEKENkeLr~lll 268 (980)
T KOG0447|consen 203 RKGLLGALLLLQIQEESTSYEQQKRKVSDKEKIDQLQEE--LLH----TQLKYQRILERLEKENKELRKLVL 268 (980)
T ss_pred hhhhHHHHHHHHHhhccCCHHHHhhhhhHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3334444444444443333 3455566666666666554 222 222233444555555555555443
No 255
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.41 E-value=6.5e+02 Score=28.71 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=11.5
Q ss_pred HHHHHhhhHHHHHHHHHHhc
Q 024453 235 ARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 235 ir~LE~~NYaL~~HL~qA~~ 254 (267)
|+.+-..|..|+--|.+.++
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666665554
No 256
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.37 E-value=1.9e+02 Score=30.63 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQIL 200 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iL 200 (267)
-||+|||.+|..|-+||+-|
T Consensus 650 ~eNe~l~aelk~lreenq~l 669 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTL 669 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhh
Confidence 35666666666666655544
No 257
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.36 E-value=7.7e+02 Score=25.48 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhh
Q 024453 185 SLKEHLQSLLND 196 (267)
Q Consensus 185 ~LKe~l~~l~~e 196 (267)
.+.+++..+..+
T Consensus 64 ~~~~~l~~~~~~ 75 (475)
T PRK10361 64 LLNNEVRSLQSI 75 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 258
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.23 E-value=2.5e+02 Score=26.90 Aligned_cols=61 Identities=30% Similarity=0.334 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
.|.+-||+..+.+..- -.+-++|.++.-.|+..|..-+..-||++++||..|--|--.++.
T Consensus 128 ~~~~d~ke~~ee~kek----------l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 128 PEYMDLKEDYEELKEK----------LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred chhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777776654321 134566777777888888888888899999999999888766653
No 259
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=9.2e+02 Score=26.24 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK 217 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~ 217 (267)
.++++..|.+....|-.++.=||-.+..+|-+...++++
T Consensus 494 ~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777777777766644
No 260
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.89 E-value=4.4e+02 Score=22.53 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 212 LEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 212 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
.||+....++..|++-|..++..++.||..
T Consensus 145 ~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 145 RDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888888888888888754
No 261
>PRK14127 cell division protein GpsB; Provisional
Probab=24.77 E-value=88 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~L 238 (267)
.|+..|+..+.+|+.|+...
T Consensus 51 ~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 51 QENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 34445555555555555544
No 262
>PRK12704 phosphodiesterase; Provisional
Probab=24.76 E-value=7.8e+02 Score=25.33 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHH
Q 024453 154 DDARGRAARILEV 166 (267)
Q Consensus 154 dDARaRAsRvLEa 166 (267)
.+|+..|..+++-
T Consensus 34 ~~Ae~eAe~I~ke 46 (520)
T PRK12704 34 KEAEEEAKRILEE 46 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 5677777666633
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.70 E-value=5e+02 Score=23.05 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024453 216 QKEKEVELLKLVISQY 231 (267)
Q Consensus 216 ~~~~E~~~Lkql~~qy 231 (267)
+...++.+|+.-+..|
T Consensus 114 ~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 114 ELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 264
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.52 E-value=9.6e+02 Score=26.30 Aligned_cols=74 Identities=28% Similarity=0.268 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHE----RHL---EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQhe----R~~---e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
+.-|...|++...++..|-.+- |=.||.+ |-+ |........++|.+-+.+|++.+..++.+=.+...+++.
T Consensus 476 L~~ELqqLReERdRl~aeLqlS--a~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 476 LSLELQQLREERDRLDAELQLS--ARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5668888888888888885543 3334433 222 333456677889999999999999999998888888887
Q ss_pred Hhc
Q 024453 252 AQE 254 (267)
Q Consensus 252 A~~ 254 (267)
++.
T Consensus 554 s~e 556 (739)
T PF07111_consen 554 STE 556 (739)
T ss_pred HHH
Confidence 654
No 265
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.46 E-value=4.6e+02 Score=24.72 Aligned_cols=54 Identities=24% Similarity=0.065 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVIS---QYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~---qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
..+-|.-.-+..+++.+..+|.+.||..+. +++..+..||..|=.|+--|--..
T Consensus 54 p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 54 PFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 334444444555555555556666665554 445566777788877776554333
No 266
>PF14282 FlxA: FlxA-like protein
Probab=24.36 E-value=3.5e+02 Score=21.79 Aligned_cols=52 Identities=29% Similarity=0.439 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
....|++|+..|..+-.-|+.- .--.-+.+.+..+.|..-+.+-+-||..|+
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~------~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQD------SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444333321 111223344444444445555555554443
No 267
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=24.24 E-value=74 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHH
Q 024453 145 HEMMSAADLDDARGRAARILEVFERSIIT 173 (267)
Q Consensus 145 ~EM~~Asd~dDARaRAsRvLEafEksi~~ 173 (267)
.||...--+. ..=|.+||+-|.|+|.+
T Consensus 20 Deli~~~~I~--p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKIT--PQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 4555544444 24589999999999976
No 268
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.23 E-value=4.7e+02 Score=26.79 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 198 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 198 ~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
.-+|.+|--||.+. .++..+|...+.||.+++|-+|
T Consensus 83 ~rIkq~FEkkNqks------ahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 83 ARIKQVFEKKNQKS------AHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777544 5788899999999999999999
No 269
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.91 E-value=1.5e+02 Score=25.30 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
.||.-||..+....|+.++||+.|--|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777788888888777665
No 270
>smart00338 BRLZ basic region leucin zipper.
Probab=23.81 E-value=2.8e+02 Score=19.92 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 216 QKEKEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 216 ~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
+...+++.|.......+.+|..|+..+..|.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555655555555554
No 271
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.75 E-value=7e+02 Score=24.44 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
|+..+...|.-|...+.-.-.||.+||+..--+.-+|..+|+..
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677788888888888888999999999999999998888744
No 272
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=23.74 E-value=7e+02 Score=24.47 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-----hhhh------------hhhHHHHHHHHHHHHH---HhhHH
Q 024453 141 DLFVHEMMSAADLDDARGRAARILEVFERSIIT-----NSKA------------SKELEHASLKEHLQSL---LNDNQ 198 (267)
Q Consensus 141 El~V~EM~~Asd~dDARaRAsRvLEafEksi~~-----ra~a------------a~~~En~~LKe~l~~l---~~eN~ 198 (267)
..|++|...=..+..|..|-..+|.. +=+|.. ..+. .++-|...||++|+.| +.++.
T Consensus 173 ~nll~~f~~ipe~~~a~~~Ie~ll~~-d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~ 249 (307)
T PF15112_consen 173 QNLLNEFRNIPEIVAAGSRIEQLLTS-DWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQE 249 (307)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHhh-hhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44666666666666655554444421 222221 1111 1666899999999998 34555
No 273
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.72 E-value=6.2e+02 Score=23.80 Aligned_cols=60 Identities=23% Similarity=0.203 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~L 238 (267)
+..|..-|-+.++.+..+-..|+..+.-|-.-..+++. ...+++.+++..-.+..+...|
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444333333332 2344555555555555554444
No 274
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.69 E-value=26 Score=36.59 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHh----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQ-HER----HLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKL 247 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQ-heR----~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 247 (267)
...+++.+.+|.+||..||..+.-. .++ +...++.++....|..-.....++|..|+...-.|.-
T Consensus 454 ~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 454 PAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999998665433 222 2344444444555544444455555555544444433
No 275
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.63 E-value=1.4e+02 Score=22.21 Aligned_cols=23 Identities=9% Similarity=0.123 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024453 218 EKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.+++++.++-+..|+.+++..|+
T Consensus 38 E~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 38 EQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777777888888888887653
No 276
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.51 E-value=2.9e+02 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
++...+.++..+++-..+.+++|..|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666666666666665
No 277
>PHA00276 phage lambda Rz-like lysis protein
Probab=23.49 E-value=3.5e+02 Score=23.78 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 024453 223 LLKLVISQYQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~~NYaL~~HL~q 251 (267)
.+-++-.+||+.+--.|-.|--|.-+|+-
T Consensus 53 aVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 53 AINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 44448889999999999999998888873
No 278
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=23.45 E-value=2.9e+02 Score=23.77 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE--LRNYALKL 247 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE--~~NYaL~~ 247 (267)
+.+....|+++++.+.......+..|.. |+.+. +..|+++|-|-+..-+.|| +.+|++++
T Consensus 20 Lekqi~~l~~kiek~r~n~~drl~siR~-------ye~Ms--~~~l~~llkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 20 LEKQIIILREKIEKIRGNPSDRLSSIRR-------YEQMS--VESLNQLLKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHhCCCccccHHHHH-------Hhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888877777776666655 44442 2456666666666666665 45666654
No 279
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.34 E-value=2.5e+02 Score=25.89 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
+|++...+.+.+..|..||.-||-
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888899999999988775
No 280
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.14 E-value=8.7e+02 Score=25.32 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
.++|.+.+||.-..|++.-.+.+.=+.-+.+|.++. +......+...|||||-|
T Consensus 394 ~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~------~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 394 CQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA------LGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhH
Confidence 455555555444444444444444444555554322 222223445555666654
No 281
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=23.10 E-value=1.1e+02 Score=26.53 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+++|+.+|..|++.|..||.-+.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999988888876544
No 282
>PRK09609 hypothetical protein; Provisional
Probab=23.09 E-value=2.2e+02 Score=27.87 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 221 VELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 221 ~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
.+.+++.+.-|+++++.+|..||-
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~~~~ 163 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKTNEE 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc
Confidence 567888999999999999977765
No 283
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.86 E-value=5.8e+02 Score=25.83 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
+++-..++-.-+.+++...+++..+.+.++.-|.+++++-
T Consensus 85 ~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 85 LAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3444444444444444444445555555555555555544
No 284
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.64 E-value=7.7e+02 Score=24.50 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCCC
Q 024453 220 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPDI 266 (267)
Q Consensus 220 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~f~PDV 266 (267)
+...|+..+.+-.++|+.||..-+.+.--+..... .+|-.-||||
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~iPN~~~~~v 111 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLL--RIPNLPHDSV 111 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCccC
Confidence 34456667777777778887777777766665433 3555556655
No 285
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.49 E-value=4.1e+02 Score=21.33 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 024453 179 KELEHASLKEH 189 (267)
Q Consensus 179 ~~~En~~LKe~ 189 (267)
+.+|+..|++|
T Consensus 29 L~eEI~~Lr~q 39 (86)
T PF12711_consen 29 LKEEIQLLREQ 39 (86)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 286
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.34 E-value=6.2e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 215 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e 215 (267)
.+.++..++..+..++..-.-|.|=+.-.-.+..+++
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444444444444444
No 287
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=22.20 E-value=1.2e+02 Score=25.76 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 024453 184 ASLKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 184 ~~LKe~l~~l~~eN~iLKRAv~ 205 (267)
+.|-.+|.+|.-||.-||+-|.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 288
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.19 E-value=4.5e+02 Score=21.63 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHhhHH
Q 024453 153 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLNDNQ 198 (267)
Q Consensus 153 ~dDARaRAsRvLEafEksi~~ra~aa-------~~~En~~LKe~l~~l~~eN~ 198 (267)
+++.+.||..-.+-+|+.+.++.... .+.|...|+++|..|..+-.
T Consensus 61 ~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 61 LEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVE 113 (118)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555666655666666666665552 44556666666655554433
No 289
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.17 E-value=8e+02 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 217 KEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
..+.+..|...+.+++.|+..||+.
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~ 407 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQ 407 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666554
No 290
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.12 E-value=8.5e+02 Score=26.66 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH----HHHH-
Q 024453 161 ARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS----QYQD- 233 (267)
Q Consensus 161 sRvLEafEksi~~ra~a--a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~----qyqE- 233 (267)
++.|..=++.|..-... ...-|...|+.+|+.+-+||..||-=|..+ .+|++-++.|..-=++..+ |+.|
T Consensus 112 ~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~---~keleir~~E~~~~~~~ae~a~kqhle~ 188 (769)
T PF05911_consen 112 SKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL---SKELEIRNEEREYSRRAAEAASKQHLES 188 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46677777777764444 256678889999999999999999888654 4666666655544333332 3333
Q ss_pred --HHHHHHhhhHHHHHHHHH
Q 024453 234 --QARNLELRNYALKLHLQR 251 (267)
Q Consensus 234 --qir~LE~~NYaL~~HL~q 251 (267)
+|-.||.-=--|+.-.|.
T Consensus 189 vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 189 VKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 355677776666666654
No 291
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=22.08 E-value=2.4e+02 Score=29.97 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHhhHHHHH
Q 024453 157 RGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 157 RaRAsRvLEafEksi~~ra~a--a~~~En~~LKe~l~~l~~eN~iLK 201 (267)
|-|=...++.+|.-+-+--.. .+.+||..||.||+.|..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 444445666777665554444 299999999999999999999886
No 292
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=22.06 E-value=81 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.6
Q ss_pred HHHHhcCCCCCHHHHHHHHhhcc
Q 024453 45 SFLLQMFPDVDPEVVKSVLGEHD 67 (267)
Q Consensus 45 ~~L~~lFP~md~q~le~aLe~cg 67 (267)
..|+++||+.|..+++++|+.-.
T Consensus 39 ~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 39 KRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHhCccCCHHHHHHHHHHHH
Confidence 89999999999999999987644
No 293
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.01 E-value=4.1e+02 Score=21.09 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=13.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 210 RHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 210 R~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
+..+......++..|+.-+..++++|..+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555544443
No 294
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.97 E-value=9e+02 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHHHhhcchhHHHHHHHHh
Q 024453 59 VKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 59 le~aLe~cgndlDaAIksL~ 78 (267)
|-..|+++-..|+.+-.-|.
T Consensus 284 L~~~L~e~Q~qLe~a~~als 303 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALS 303 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566677666665544444
No 295
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=21.86 E-value=87 Score=28.94 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.5
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 26 RSRCSTFGSLVRSGS---DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|+||- .++|.+ +.+...|...|+++++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ----IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce----eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 345544 555677888888888888888888888877777765543
No 296
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=21.84 E-value=90 Score=24.18 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=16.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEH 66 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~c 66 (267)
+--|..+||+++|..+.+++.+-
T Consensus 22 fkD~~k~~pd~k~R~vKKi~~~L 44 (67)
T PF08679_consen 22 FKDFYKAFPDAKPREVKKIVNEL 44 (67)
T ss_dssp HHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHHHH
Confidence 44577889999999999988654
No 297
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=21.66 E-value=2.1e+02 Score=30.25 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+..+++|+.+++|+.+..-|.--|.||.+ |+-||+
T Consensus 624 ~v~~lqqd~~kmkk~leeEqkaRrdLe~l---l~k~l~ 658 (661)
T KOG2070|consen 624 EVSELQQDNKKMKKVLEEEQKARRDLEKL---LRKMLK 658 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 34556788888888888888888888875 455554
No 298
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.29 E-value=6.3e+02 Score=22.98 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhh--h-hhHHHHHHHHHHHHHHhh--------HHHHHHHHHHH
Q 024453 139 WVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA--S-KELEHASLKEHLQSLLND--------NQILKKAVSIQ 207 (267)
Q Consensus 139 WVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~a--a-~~~En~~LKe~l~~l~~e--------N~iLKRAv~IQ 207 (267)
=++.+++||-.= |...=|.-|..-|...++-... +.. . .+.|+..|++.+...+.+ -..|.+|.
T Consensus 131 ea~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~-v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~--- 205 (264)
T PF06008_consen 131 EAQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSR-VQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ--- 205 (264)
T ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHH-HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 356666776554 4666666666666666654332 222 1 344555554444332222 11222221
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 208 HERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 208 heR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
.-.++.+..+...+. .+..+++++..++..+.-.+.||..|.
T Consensus 206 -~~~~ea~~ln~~n~~---~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 206 -NKTREAEDLNRANQK---NLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333443333 666777788888888888888887764
No 299
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.23 E-value=3e+02 Score=19.29 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHHHHHHHhhH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 202 KAVSIQHERHL---EQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 202 RAv~IQheR~~---e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
+=.+-+..|.+ ..+++.+++..|+....+-+.+|..|+
T Consensus 12 Nr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 12 NREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444443 222344444444444444444444443
No 300
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.20 E-value=6.4e+02 Score=24.08 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCC
Q 024453 230 QYQDQARNLELRNYALKLHLQRAQESSSIPRQFHP 264 (267)
Q Consensus 230 qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~f~P 264 (267)
.+++++..|+.....|--..--|-..-+..|.|+|
T Consensus 295 RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~ 329 (344)
T PF12777_consen 295 RWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTP 329 (344)
T ss_dssp CCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSH
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCH
Confidence 34455555555544443333333333345555543
No 301
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.17 E-value=6.2e+02 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
+..|...|+++++.+.+|...|+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888887776
No 302
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.15 E-value=1e+03 Score=25.35 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=11.1
Q ss_pred chhHHHHHHHHhccccc
Q 024453 67 DNKIEDAIDRLRVLSFS 83 (267)
Q Consensus 67 gndlDaAIksL~~L~L~ 83 (267)
..+||.|++-+..+.++
T Consensus 628 vt~l~~a~~~~~~~~~~ 644 (1179)
T TIGR02168 628 VDDLDNALELAKKLRPG 644 (1179)
T ss_pred eCCHHHHHHHHHHcCCC
Confidence 34778888777665543
No 303
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.12 E-value=3.5e+02 Score=20.00 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 024453 218 EKEVELLKLVISQY 231 (267)
Q Consensus 218 ~~E~~~Lkql~~qy 231 (267)
.++..+|+.++-||
T Consensus 46 ~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 46 EQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444555577776
No 304
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.10 E-value=5e+02 Score=21.79 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HhhHhHHHHHHHHHHHHHHHHH
Q 024453 166 VFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQH----ERHLEQEQKEKEVELLKLVISQ 230 (267)
Q Consensus 166 afEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQh----eR~~e~e~~~~E~~~Lkql~~q 230 (267)
+||.+=.+.... + ++.+....|.-.+.|++|+-=|+.++.--. .|.+...+.+.++..+.+-++-
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444 2 888888889999999999988888775322 2333334444444444444444
No 305
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.10 E-value=6.2e+02 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=14.3
Q ss_pred CChhhhHHHHHHHHhcCCCc
Q 024453 134 TDGSKWVDLFVHEMMSAADL 153 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~Asd~ 153 (267)
.=..++++-|+.++..-..+
T Consensus 101 RVP~~~~~~~l~~l~~~g~v 120 (262)
T PF14257_consen 101 RVPADKFDSFLDELSELGKV 120 (262)
T ss_pred EECHHHHHHHHHHHhccCce
Confidence 34568999999998855444
No 306
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=21.03 E-value=77 Score=23.99 Aligned_cols=13 Identities=46% Similarity=0.739 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHH
Q 024453 158 GRAARILEVFERS 170 (267)
Q Consensus 158 aRAsRvLEafEks 170 (267)
+||+|+++.+|+.
T Consensus 35 nrAariid~LE~~ 47 (65)
T PF09397_consen 35 NRAARIIDQLEEE 47 (65)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 7999999999973
No 307
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=21.02 E-value=5.7e+02 Score=23.82 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 024453 223 LLKLVISQYQDQARNLELRNYALKLHLQRAQESS 256 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 256 (267)
.|.++-.+|++.-+.|+. |..+++|....-
T Consensus 102 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 131 (239)
T TIGR03789 102 ALEQLEAEYQQAQVHLET----LQQDQQQLLEEL 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhcc
Confidence 444456666666555553 344555554443
No 308
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.00 E-value=15 Score=33.34 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=36.9
Q ss_pred HHHhhHH--HHHHHHHHHHHhhH-hHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 024453 192 SLLNDNQ--ILKKAVSIQHERHL-EQEQKEKEVEL-LKLVISQYQDQARNLE 239 (267)
Q Consensus 192 ~l~~eN~--iLKRAv~IQheR~~-e~e~~~~E~~~-Lkql~~qyqEqir~LE 239 (267)
+|.++++ .+||-|.|+-+.+. .|+++.+-++. +||+..|-.|+||+|+
T Consensus 139 ~L~~~~G~~~~~r~F~~e~eq~~~gyda~V~als~~~~Q~a~qia~~vk~l~ 190 (190)
T COG3009 139 RLLHDKGQPLINRPFHLELEQQGDGYDAMVRALSGGLKQLAAQIAEQVKRLP 190 (190)
T ss_pred EEeccccCccccCceeeeecccCCCHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3556566 68999999966655 78888776654 7888889999999874
No 309
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.96 E-value=8.7e+02 Score=24.53 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
-|.|...||-|-+.|+.+-.-..-.|.-=-.+.+..|+. .+|.++|+-.+..|+.+.+.-|..+-.|.--|
T Consensus 97 ~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 97 RQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 345555565555555554444433332222222233332 34555555566666666655555555554433
No 310
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.81 E-value=8.8e+02 Score=24.51 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ--------------YQDQARNLELRNYALKLHLQR 251 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q--------------yqEqir~LE~~NYaL~~HL~q 251 (267)
|+..+..+...|-=|++.-.-=.+||+|-+...-..++|+..+.+ -++=|+.+++.|--|.|.|+-
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455566666666666666555556666666554444444444333 345567777778878777775
Q ss_pred Hhc
Q 024453 252 AQE 254 (267)
Q Consensus 252 A~~ 254 (267)
.++
T Consensus 153 l~~ 155 (401)
T PF06785_consen 153 LQQ 155 (401)
T ss_pred HHH
Confidence 544
No 311
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.66 E-value=4.1e+02 Score=20.75 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE 239 (267)
.+-+.++|.-++--..+||.|.
T Consensus 56 ~~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 56 TKLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666654
No 312
>PF13514 AAA_27: AAA domain
Probab=20.65 E-value=1.2e+03 Score=25.96 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 161 ARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 161 sRvLEafEksi~~ra~a-a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 239 (267)
..+++.|+|-...-=++ .-....-.++.+++.+.++-.-.+--..-=..-.++++...++++.|+.-+...+.+++.||
T Consensus 129 ~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 129 SQVLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh-----hHHHHHHHHHHhccCCCCCCCCCC
Q 024453 240 LR-----NYALKLHLQRAQESSSIPRQFHPD 265 (267)
Q Consensus 240 ~~-----NYaL~~HL~qA~~~~~~~g~f~PD 265 (267)
.- .|.-...|+.....-.....||||
T Consensus 209 r~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~ 239 (1111)
T PF13514_consen 209 RLRRAWPLLAELQQLEAELAELGEVPDFPED 239 (1111)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCcCCCChh
No 313
>PRK11677 hypothetical protein; Provisional
Probab=20.59 E-value=1.5e+02 Score=25.52 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.8
Q ss_pred HHHHHhhhHHHHHHHHH
Q 024453 235 ARNLELRNYALKLHLQR 251 (267)
Q Consensus 235 ir~LE~~NYaL~~HL~q 251 (267)
+.+|-.+==-|--||.+
T Consensus 63 l~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 63 LDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444456667743
No 314
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.50 E-value=1.4e+03 Score=26.87 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
..+++.|+..+..|++.+..++..-+.+..-+.
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544443
No 315
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.43 E-value=6.1e+02 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKA 203 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRA 203 (267)
+..-|.+|++|++.....|.-|..=
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~d 103 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQED 103 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788888888888888777653
No 316
>PF13991 BssS: BssS protein family
Probab=20.19 E-value=1e+02 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 024453 223 LLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE~~NYa 244 (267)
+.||+++.-+++|..+|-+-|.
T Consensus 46 ~Ar~Li~~L~~~I~kiE~se~~ 67 (73)
T PF13991_consen 46 MARQLISILEAGIDKIESSEYQ 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHhCCcc
Confidence 6789999999999999988774
No 317
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.12 E-value=5.9e+02 Score=22.25 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=20.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 190 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
++.|+.-+..|+.++..= .+|+...+++++|++-+....++||.+
T Consensus 4 ~~~L~~~d~~L~~~L~~l----~~hq~~~~~I~~L~~e~~~ld~~i~~~ 48 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL----QEHQENQARIQQLRAEIEELDEQIRDI 48 (188)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665432 122223344444444444444444433
No 318
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=20.11 E-value=7.1e+02 Score=25.76 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHH
Q 024453 151 ADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELL 224 (267)
Q Consensus 151 sd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~L 224 (267)
..+++|+.=..|+++.++|.-...... + ..-|..++.+...+.-..-.+|++|+.|+-....+.. ..-..+..|
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 678899999999999999933333222 2 4556677777777777888888888888874433322 234556677
Q ss_pred HHHHHHHHHHHHHH
Q 024453 225 KLVISQYQDQARNL 238 (267)
Q Consensus 225 kql~~qyqEqir~L 238 (267)
.+...+|+|-..-+
T Consensus 377 ~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 377 YLKMGKYKEAEELY 390 (508)
T ss_pred HHHhcchhHHHHHH
Confidence 77777777755443
No 319
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.09 E-value=1.1e+03 Score=27.39 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=5.0
Q ss_pred chhHHHHHH
Q 024453 67 DNKIEDAID 75 (267)
Q Consensus 67 gndlDaAIk 75 (267)
+++|+-|=+
T Consensus 721 ~d~LeQAtR 729 (1293)
T KOG0996|consen 721 ADNLEQATR 729 (1293)
T ss_pred hcCHHHHHH
Confidence 346666644
No 320
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.00 E-value=7.1e+02 Score=23.09 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHH
Q 024453 151 ADLDDARGRAARILEVFERSIITNSKASKELEHASLK-----------EHLQSLLNDNQILKKAVSIQHERHLEQEQKEK 219 (267)
Q Consensus 151 sd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LK-----------e~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~ 219 (267)
..+.+||.++.-+-.+|+.+|..|+.. |+|...|= ++.-.|.+.-..+.+++.-=.+...+.|....
T Consensus 46 ~~l~~~r~~~~~aK~~Y~~ai~~Rs~s--QrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e 123 (207)
T PF05546_consen 46 DELEAARQEVREAKAAYDDAIQQRSSS--QREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVE 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987 55544432 23455666666666666655555555554433
Done!