Query 024453
Match_columns 267
No_of_seqs 66 out of 68
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 99.0 1.7E-10 5.9E-15 86.1 4.1 45 41-85 19-63 (67)
2 1wgl_A TOLL-interacting protei 99.0 3.6E-10 1.2E-14 82.3 4.3 46 41-86 10-55 (59)
3 1p3q_Q VPS9P, vacuolar protein 97.9 1.7E-06 5.8E-11 62.4 0.9 39 42-80 14-52 (54)
4 1otr_A Protein CUE2; protein-p 97.6 3.5E-05 1.2E-09 54.3 3.6 37 44-80 8-44 (49)
5 2di0_A Activating signal coint 96.6 0.0015 5.2E-08 49.3 3.9 39 41-79 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 96.4 0.043 1.5E-06 42.3 10.6 67 162-238 6-74 (81)
7 2v71_A Nuclear distribution pr 94.9 0.51 1.8E-05 41.2 13.0 73 180-252 55-128 (189)
8 1z96_A DNA-damage, UBA-domain 94.2 0.065 2.2E-06 34.4 4.4 34 42-77 6-39 (40)
9 2v66_B Nuclear distribution pr 94.1 0.49 1.7E-05 38.3 10.2 68 183-250 5-73 (111)
10 1vg5_A RSGI RUH-014, rhomboid 93.8 0.068 2.3E-06 40.1 4.4 37 41-79 30-66 (73)
11 2jy5_A Ubiquilin-1; UBA, alter 92.4 0.16 5.6E-06 35.2 4.4 36 42-79 14-50 (52)
12 2knz_A Ubiquilin-4; cytoplasm, 92.4 0.14 4.9E-06 35.6 4.1 36 42-79 13-49 (53)
13 2cpw_A CBL-interacting protein 92.4 0.43 1.5E-05 34.5 6.7 51 24-79 6-57 (64)
14 2dae_A KIAA0733 protein; mitog 92.2 0.099 3.4E-06 39.8 3.2 37 43-79 13-49 (75)
15 1vej_A Riken cDNA 4931431F19; 92.2 0.15 5.1E-06 38.4 4.1 36 42-79 31-67 (74)
16 2dak_A Ubiquitin carboxyl-term 92.1 0.1 3.5E-06 37.4 3.1 37 41-79 10-46 (63)
17 2g3q_A Protein YBL047C; endocy 91.9 0.19 6.5E-06 33.1 4.0 36 42-79 6-41 (43)
18 2dah_A Ubiquilin-3; UBA domain 90.9 0.23 7.9E-06 34.9 3.8 37 42-80 11-48 (54)
19 1wji_A Tudor domain containing 90.7 0.26 9E-06 35.6 4.0 37 41-79 10-46 (63)
20 2bwb_A Ubiquitin-like protein 90.6 0.34 1.2E-05 33.0 4.3 35 43-79 10-45 (46)
21 1ify_A HHR23A, UV excision rep 90.2 0.27 9.1E-06 33.7 3.5 36 42-79 10-45 (49)
22 1wr1_B Ubiquitin-like protein 88.3 0.5 1.7E-05 33.8 3.9 36 42-79 19-55 (58)
23 1wj7_A Hypothetical protein (R 88.2 0.48 1.7E-05 38.0 4.2 36 43-79 42-77 (104)
24 3hnw_A Uncharacterized protein 88.0 4.1 0.00014 33.5 9.8 95 134-242 31-133 (138)
25 2ejs_A Autocrine motility fact 87.9 0.68 2.3E-05 33.5 4.4 41 41-82 14-54 (58)
26 2cp9_A EF-TS, EF-TSMT, elongat 87.4 0.28 9.4E-06 36.1 2.1 39 41-80 10-48 (64)
27 2ekf_A Ancient ubiquitous prot 86.4 0.9 3.1E-05 33.2 4.4 41 41-82 14-54 (61)
28 1whc_A RSGI RUH-027, UBA/UBX 3 86.4 1.4 4.9E-05 31.7 5.5 37 41-79 10-47 (64)
29 3oja_B Anopheles plasmodium-re 86.2 6.4 0.00022 37.3 11.4 71 181-254 509-579 (597)
30 1veg_A NEDD8 ultimate buster-1 83.0 1.3 4.4E-05 34.0 4.1 37 41-79 30-66 (83)
31 4g3o_A E3 ubiquitin-protein li 82.8 1.5 5.2E-05 31.8 4.2 38 41-79 18-55 (58)
32 2crn_A Ubash3A protein; compac 82.6 2.8 9.5E-05 30.3 5.6 37 41-79 10-47 (64)
33 1dv0_A DNA repair protein HHR2 81.8 0.79 2.7E-05 31.2 2.3 35 43-79 7-41 (47)
34 2ekk_A UBA domain from E3 ubiq 81.2 1.4 4.8E-05 29.5 3.4 36 41-79 10-45 (47)
35 2dag_A Ubiquitin carboxyl-term 79.9 1.8 6.3E-05 32.0 3.9 38 41-80 10-48 (74)
36 2oqq_A Transcription factor HY 79.8 5.9 0.0002 27.1 6.0 35 213-250 7-41 (42)
37 1wiv_A UBP14, ubiquitin-specif 79.8 2 6.9E-05 31.7 4.1 37 41-79 30-66 (73)
38 2zxx_A Geminin; coiled-coil, c 79.6 4.7 0.00016 30.8 6.2 45 209-253 24-68 (79)
39 2dna_A Unnamed protein product 78.8 1.5 5.2E-05 32.4 3.1 35 43-79 22-57 (67)
40 2dkl_A Trinucleotide repeat co 78.6 2.3 7.9E-05 32.4 4.2 41 41-83 22-62 (85)
41 2dfs_A Myosin-5A; myosin-V, in 78.4 33 0.0011 36.5 14.2 62 179-240 989-1051(1080)
42 1gk7_A Vimentin; intermediate 78.2 3.4 0.00012 27.5 4.4 32 219-250 6-37 (39)
43 2w6b_A RHO guanine nucleotide 77.3 11 0.00037 27.2 7.1 31 168-206 5-35 (56)
44 1hjb_A Ccaat/enhancer binding 75.1 5.9 0.0002 30.5 5.7 40 185-234 40-79 (87)
45 2dai_A Ubadc1, ubiquitin assoc 74.3 3.4 0.00012 31.3 4.1 37 41-79 30-66 (83)
46 2w83_C C-JUN-amino-terminal ki 73.3 16 0.00054 27.9 7.5 53 188-240 9-72 (77)
47 1hjb_A Ccaat/enhancer binding 73.2 12 0.0004 28.9 6.9 27 179-205 48-74 (87)
48 3qne_A Seryl-tRNA synthetase, 69.8 47 0.0016 32.4 12.0 59 179-244 45-103 (485)
49 1gd2_E Transcription factor PA 68.7 8.2 0.00028 28.6 4.9 23 179-201 48-70 (70)
50 1ci6_A Transcription factor AT 68.6 6.1 0.00021 28.3 4.1 41 179-229 21-61 (63)
51 1nkp_B MAX protein, MYC proto- 68.5 10 0.00034 28.0 5.5 40 198-237 40-79 (83)
52 1vdl_A Ubiquitin carboxyl-term 68.4 6.1 0.00021 30.2 4.2 39 41-79 25-63 (80)
53 3oja_B Anopheles plasmodium-re 68.0 34 0.0012 32.3 10.4 26 183-208 532-557 (597)
54 2lbc_A Ubiquitin carboxyl-term 67.8 4.9 0.00017 31.8 3.9 37 41-79 79-115 (126)
55 3s4r_A Vimentin; alpha-helix, 67.2 7.6 0.00026 29.9 4.7 35 220-254 10-44 (93)
56 1gu4_A CAAT/enhancer binding p 67.1 5.9 0.0002 29.9 3.9 23 179-201 48-70 (78)
57 1a93_B MAX protein, coiled coi 66.4 8.4 0.00029 25.2 4.0 22 218-239 13-34 (34)
58 4fla_A Regulation of nuclear P 66.4 56 0.0019 27.2 13.0 78 157-249 67-144 (152)
59 1ci6_A Transcription factor AT 66.3 32 0.0011 24.4 8.2 25 179-203 35-59 (63)
60 4ae4_A Ubiquitin-associated pr 65.9 4.8 0.00016 32.3 3.4 35 43-79 79-113 (118)
61 1ses_A Seryl-tRNA synthetase; 65.2 45 0.0015 31.5 10.5 77 179-266 33-109 (421)
62 2cwb_A Chimera of immunoglobul 65.1 4.5 0.00015 32.3 3.1 37 42-79 68-104 (108)
63 1uii_A Geminin; human, DNA rep 64.8 26 0.00089 27.0 7.2 21 181-201 46-66 (83)
64 2dq0_A Seryl-tRNA synthetase; 64.0 72 0.0024 30.5 11.8 79 179-266 36-114 (455)
65 1wlq_A Geminin; coiled-coil; 2 62.5 25 0.00084 27.1 6.7 37 210-246 29-65 (83)
66 4emc_A Monopolin complex subun 61.7 25 0.00085 30.8 7.4 41 179-236 25-65 (190)
67 3iox_A AGI/II, PA; alpha helix 61.4 1.2E+02 0.0043 29.9 13.1 75 155-240 20-94 (497)
68 1uii_A Geminin; human, DNA rep 61.3 19 0.00064 27.8 5.8 23 179-201 51-73 (83)
69 1aip_C EF-TS, elongation facto 60.3 4.3 0.00015 35.6 2.4 29 59-87 21-49 (196)
70 2wvr_A Geminin; DNA replicatio 59.2 27 0.00091 31.0 7.2 23 179-201 113-135 (209)
71 2j5u_A MREC protein; bacterial 58.8 6.7 0.00023 34.8 3.4 34 195-228 26-59 (255)
72 1wgn_A UBAP1, ubiquitin associ 57.9 6.2 0.00021 29.1 2.5 34 44-79 23-56 (63)
73 1xb2_B EF-TS, elongation facto 57.8 4.8 0.00017 36.9 2.4 21 59-79 22-42 (291)
74 3a7p_A Autophagy protein 16; c 57.5 87 0.003 26.4 10.2 36 210-245 94-129 (152)
75 1v92_A NSFL1 cofactor P47; 3-h 56.4 8.1 0.00028 25.1 2.7 36 43-79 8-43 (46)
76 1gu4_A CAAT/enhancer binding p 54.5 22 0.00076 26.7 5.2 39 182-230 37-75 (78)
77 1i84_S Smooth muscle myosin he 53.1 99 0.0034 32.7 11.6 14 54-67 695-708 (1184)
78 1vek_A UBP14, ubiquitin-specif 52.9 16 0.00054 27.6 4.2 37 41-79 30-67 (84)
79 3oja_A Leucine-rich immune mol 52.8 93 0.0032 28.8 10.3 36 217-252 426-461 (487)
80 1t2k_D Cyclic-AMP-dependent tr 52.6 55 0.0019 22.7 7.0 38 181-228 22-59 (61)
81 2yy0_A C-MYC-binding protein; 52.0 16 0.00056 25.5 3.8 24 179-202 24-47 (53)
82 1dip_A Delta-sleep-inducing pe 51.2 13 0.00043 28.4 3.3 31 219-249 15-45 (78)
83 2cp8_A NEXT to BRCA1 gene 1 pr 51.1 12 0.0004 26.6 3.0 36 43-80 12-48 (54)
84 3na7_A HP0958; flagellar bioge 50.2 84 0.0029 27.3 9.0 20 217-236 65-84 (256)
85 2ooa_A E3 ubiquitin-protein li 49.6 16 0.00055 25.9 3.4 39 42-82 13-51 (52)
86 1tr8_A Conserved protein (MTH1 49.3 12 0.00041 29.4 3.1 33 44-77 69-101 (102)
87 4dzn_A Coiled-coil peptide CC- 48.5 18 0.00063 23.1 3.2 24 179-202 7-30 (33)
88 1oai_A Nuclear RNA export fact 48.3 16 0.00055 25.9 3.4 31 52-82 18-48 (59)
89 4dzn_A Coiled-coil peptide CC- 48.1 29 0.001 22.1 4.1 21 182-202 3-23 (33)
90 4ae4_A Ubiquitin-associated pr 47.9 13 0.00045 29.7 3.2 38 41-80 9-46 (118)
91 1deb_A APC protein, adenomatou 47.7 73 0.0025 22.6 7.2 19 186-204 8-26 (54)
92 1wle_A Seryl-tRNA synthetase; 47.3 2E+02 0.0068 28.0 12.0 43 215-266 119-161 (501)
93 2dfs_A Myosin-5A; myosin-V, in 46.4 87 0.003 33.3 9.9 17 54-71 673-689 (1080)
94 1go4_E MAD1 (mitotic arrest de 46.2 92 0.0031 24.5 7.7 27 180-206 11-37 (100)
95 3l4f_A RHO guanine nucleotide 46.1 66 0.0023 23.5 6.3 26 186-211 12-38 (61)
96 2v4h_A NF-kappa-B essential mo 46.0 1.2E+02 0.0039 24.5 9.5 43 196-242 63-106 (110)
97 2lva_A Ubiquitin carboxyl-term 51.6 4.3 0.00015 33.6 0.0 43 41-83 19-61 (129)
98 3vp9_A General transcriptional 45.0 54 0.0018 25.6 6.1 15 227-241 69-83 (92)
99 1nkp_A C-MYC, MYC proto-oncoge 44.9 63 0.0022 24.2 6.4 8 198-205 45-52 (88)
100 3mq9_A Bone marrow stromal ant 44.4 1.9E+02 0.0065 26.5 13.1 70 182-251 374-461 (471)
101 1jnm_A Proto-oncogene C-JUN; B 44.2 36 0.0012 23.9 4.7 22 181-202 22-43 (62)
102 2wt7_A Proto-oncogene protein 43.2 84 0.0029 22.1 7.2 41 179-229 21-61 (63)
103 2d9s_A CBL E3 ubiquitin protei 42.8 24 0.00081 25.1 3.4 35 44-80 13-47 (53)
104 3a2a_A Voltage-gated hydrogen 41.9 83 0.0028 22.7 6.2 38 189-229 12-49 (58)
105 2akf_A Coronin-1A; coiled coil 41.1 56 0.0019 20.9 4.6 25 218-242 5-29 (32)
106 3e7l_A Transcriptional regulat 41.0 6.8 0.00023 27.1 0.4 26 53-78 18-43 (63)
107 2yy0_A C-MYC-binding protein; 40.7 48 0.0017 23.1 4.8 26 213-238 20-45 (53)
108 1nlw_A MAD protein, MAX dimeri 40.2 68 0.0023 23.7 5.9 8 198-205 40-47 (80)
109 2dzl_A Protein FAM100B; UBA-li 39.7 27 0.00094 25.1 3.5 37 42-79 19-55 (66)
110 2dal_A Protein KIAA0794; FAS a 39.7 26 0.00088 24.7 3.3 38 41-79 16-53 (62)
111 1t6f_A Geminin; coiled-coil, c 38.5 76 0.0026 21.0 5.1 28 218-245 6-33 (37)
112 3mq7_A Bone marrow stromal ant 37.9 1.7E+02 0.0056 24.0 8.2 39 214-252 73-111 (121)
113 1umq_A Photosynthetic apparatu 36.9 15 0.00052 27.4 1.8 25 54-78 41-65 (81)
114 3he5_B Synzip2; heterodimeric 36.5 1E+02 0.0036 21.3 6.7 41 183-240 5-45 (52)
115 4dk0_A Putative MACA; alpha-ha 36.4 59 0.002 28.6 5.9 30 212-241 115-144 (369)
116 2dam_A ETEA protein; KIAA0887, 36.0 33 0.0011 24.7 3.4 39 41-79 19-57 (67)
117 3k9o_A Ubiquitin-conjugating e 35.9 37 0.0013 28.7 4.3 34 44-79 167-200 (201)
118 3vem_A Helicase protein MOM1; 35.3 1.7E+02 0.0059 23.7 7.9 50 186-240 37-86 (115)
119 2qsf_X RAD23, UV excision repa 35.0 40 0.0014 28.8 4.3 36 42-79 132-167 (171)
120 2oo9_A E3 ubiquitin-protein li 34.9 35 0.0012 23.7 3.2 28 53-80 15-42 (46)
121 3hx3_A Retinaldehyde-binding p 34.2 36 0.0012 30.3 4.1 30 51-80 87-116 (316)
122 3ghg_A Fibrinogen alpha chain; 34.2 2.3E+02 0.0078 28.5 10.1 26 218-243 130-155 (562)
123 2dq3_A Seryl-tRNA synthetase; 34.1 42 0.0014 31.7 4.8 29 216-244 72-100 (425)
124 2lbc_A Ubiquitin carboxyl-term 34.1 24 0.0008 27.8 2.6 36 42-79 5-41 (126)
125 3m9b_A Proteasome-associated A 34.0 47 0.0016 30.1 4.9 54 179-238 29-94 (251)
126 3tnu_A Keratin, type I cytoske 33.2 1.8E+02 0.0061 22.9 8.3 15 135-149 10-24 (131)
127 2jn6_A Protein CGL2762, transp 32.8 2.9 0.0001 30.6 -2.7 28 179-206 64-91 (97)
128 2jp7_A MRNA export factor MEX6 32.5 31 0.0011 24.4 2.8 29 52-80 17-45 (57)
129 2l5g_B Putative uncharacterize 32.0 1.1E+02 0.0037 20.8 5.2 29 213-241 10-38 (42)
130 3lss_A Seryl-tRNA synthetase; 32.0 3.3E+02 0.011 26.4 10.8 24 179-202 49-72 (484)
131 3ghg_A Fibrinogen alpha chain; 29.9 2.8E+02 0.0096 27.8 9.9 103 58-216 50-152 (562)
132 1ik9_A DNA repair protein XRCC 29.9 2.7E+02 0.0094 24.1 10.9 52 179-237 151-208 (213)
133 1dip_A Delta-sleep-inducing pe 29.8 51 0.0017 25.1 3.6 20 179-198 13-32 (78)
134 3v6i_A V-type ATP synthase sub 29.8 2.3E+02 0.0078 23.1 9.4 18 224-241 79-96 (187)
135 1aua_A Phosphatidylinositol tr 29.8 43 0.0015 29.0 3.8 36 44-79 34-75 (296)
136 4emc_A Monopolin complex subun 29.8 1.4E+02 0.0048 26.0 7.0 43 190-242 22-64 (190)
137 2dgc_A Protein (GCN4); basic d 29.6 71 0.0024 22.7 4.3 23 179-201 28-50 (63)
138 2oqq_A Transcription factor HY 29.5 1.3E+02 0.0046 20.4 5.8 26 179-204 15-40 (42)
139 1c1g_A Tropomyosin; contractIl 29.4 2.1E+02 0.0072 22.6 11.5 17 223-239 80-96 (284)
140 2zxx_A Geminin; coiled-coil, c 29.4 33 0.0011 26.1 2.6 24 179-202 39-62 (79)
141 3tnu_B Keratin, type II cytosk 29.0 2.1E+02 0.0071 22.4 9.5 15 190-204 52-66 (129)
142 3nmd_A CGMP dependent protein 28.9 1.6E+02 0.0056 21.9 6.3 44 186-232 24-67 (72)
143 4e18_B Catenin alpha-1; four h 28.8 86 0.0029 22.7 4.5 47 186-232 8-55 (59)
144 2v4h_A NF-kappa-B essential mo 28.6 26 0.0009 28.2 2.0 14 183-196 64-77 (110)
145 4a5u_A RNA replicase polyprote 28.4 12 0.0004 32.1 -0.1 72 6-80 24-117 (160)
146 1deb_A APC protein, adenomatou 28.4 1.6E+02 0.0054 20.9 6.8 41 214-254 12-52 (54)
147 3e21_A HFAF1, FAS-associated f 28.3 52 0.0018 22.2 3.2 35 42-76 7-41 (45)
148 4ath_A MITF, microphthalmia-as 27.6 2E+02 0.007 21.9 7.0 9 198-206 32-40 (83)
149 1nkp_B MAX protein, MYC proto- 27.4 76 0.0026 23.1 4.2 33 218-250 46-78 (83)
150 1g2h_A Transcriptional regulat 27.3 16 0.00055 25.1 0.5 27 51-78 18-44 (61)
151 1t2k_D Cyclic-AMP-dependent tr 27.2 1.6E+02 0.0053 20.4 8.9 53 197-249 4-59 (61)
152 1am9_A Srebp-1A, protein (ster 26.9 1.5E+02 0.005 21.7 5.8 8 198-205 43-50 (82)
153 2juj_A E3 ubiquitin-protein li 26.9 46 0.0016 23.9 2.8 37 44-82 11-47 (56)
154 1ntc_A Protein (nitrogen regul 26.7 18 0.0006 26.8 0.6 26 53-78 50-75 (91)
155 2wvr_A Geminin; DNA replicatio 26.6 1.8E+02 0.0061 25.7 7.1 26 179-204 120-145 (209)
156 4e61_A Protein BIM1; EB1-like 26.5 97 0.0033 24.7 4.9 27 178-204 8-34 (106)
157 1t6f_A Geminin; coiled-coil, c 25.4 84 0.0029 20.8 3.6 23 179-201 12-34 (37)
158 2j5u_A MREC protein; bacterial 24.5 48 0.0016 29.2 3.1 18 179-196 24-41 (255)
159 1wt6_A Myotonin-protein kinase 24.4 2.4E+02 0.0081 21.5 7.2 26 209-237 45-70 (81)
160 1eto_A FIS, factor for inversi 24.4 34 0.0012 26.1 1.9 26 53-78 57-82 (98)
161 3n71_A Histone lysine methyltr 24.2 4.4E+02 0.015 24.9 10.0 108 150-260 364-473 (490)
162 3viq_A SWI5-dependent recombin 23.6 1.7E+02 0.006 23.4 6.0 30 179-208 5-34 (122)
163 4h22_A Leucine-rich repeat fli 23.4 2.8E+02 0.0095 22.0 10.0 62 167-238 11-77 (103)
164 2py8_A Hypothetical protein RB 22.6 1.7E+02 0.0057 24.6 5.9 28 133-169 50-77 (147)
165 3nr7_A DNA-binding protein H-N 22.6 2.5E+02 0.0087 21.2 6.8 38 200-237 33-70 (86)
166 3q8t_A Beclin-1; autophagy, AT 22.5 2.6E+02 0.0088 21.3 13.5 72 179-250 16-91 (96)
167 3cvf_A Homer-3, homer protein 22.1 2.5E+02 0.0087 21.1 7.1 21 185-205 10-30 (79)
168 1i84_S Smooth muscle myosin he 22.1 3.5E+02 0.012 28.6 9.5 15 35-49 692-706 (1184)
169 2oxj_A Hybrid alpha/beta pepti 21.8 1.7E+02 0.0058 19.0 4.5 15 186-200 6-20 (34)
170 3efg_A Protein SLYX homolog; x 21.6 1.8E+02 0.006 21.5 5.3 36 219-254 28-63 (78)
171 2ve8_A FTSK, DNA translocase F 21.5 46 0.0016 24.9 2.0 31 140-170 16-51 (73)
172 2qho_B E3 ubiquitin-protein li 21.2 1E+02 0.0035 21.8 3.6 45 34-78 3-47 (53)
173 4e29_A Chimeric WZZB chain len 21.1 4.4E+02 0.015 23.4 10.0 19 227-248 144-162 (248)
174 1olm_A SEC14-like protein 2; l 20.9 70 0.0024 29.1 3.6 29 51-79 30-58 (403)
175 2v71_A Nuclear distribution pr 20.6 4.1E+02 0.014 22.9 11.6 26 227-252 89-114 (189)
176 2wg5_A General control protein 20.4 1E+02 0.0035 23.9 4.0 31 207-240 5-35 (109)
177 1r5l_A Alpha-TTP, protein (alp 20.4 79 0.0027 26.4 3.6 27 53-79 30-56 (262)
178 2oto_A M protein; helical coil 20.2 3.4E+02 0.012 21.8 9.1 57 179-242 48-113 (155)
179 1zxa_A CGMP-dependent protein 20.2 1.5E+02 0.005 21.8 4.5 23 214-236 34-56 (67)
180 1oqy_A HHR23A, UV excision rep 20.0 33 0.0011 32.2 1.2 32 44-77 329-360 (368)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=86.14 Aligned_cols=45 Identities=20% Similarity=0.463 Sum_probs=41.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (267)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+.
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 667899999999999999999999999999999999999887653
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=98.97 E-value=3.6e-10 Score=82.30 Aligned_cols=46 Identities=26% Similarity=0.461 Sum_probs=42.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccccch
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNIS 86 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa~ 86 (267)
+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+..
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCC
Confidence 4458999999999999999999999999999999999999887653
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.95 E-value=1.7e-06 Score=62.36 Aligned_cols=39 Identities=33% Similarity=0.578 Sum_probs=30.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
..+..|+.+||+||.+||+.+|++++.++|+||.+|.++
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 347889999999999999999999999999999999775
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.64 E-value=3.5e-05 Score=54.30 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
+..|..+||..+...+..+|+.|++|+|.||..|.+.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6789999999999999999999999999999998774
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.64 E-value=0.0015 Score=49.30 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.+.+.+++.|||++....+++.|+.+|+|++.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 667999999999999999999999999999999999987
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.37 E-value=0.043 Score=42.32 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 162 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 162 RvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
-+|+-+|.=|-+..-. + ++.|+..||++-..|..||.-++.- .+...+|.++||+-...+|++|+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~----------~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ----------REELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777765555 3 8999999999999999998876542 2567789999999999999999987
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.90 E-value=0.51 Score=41.23 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 180 ELEHASLKEHLQSLLNDNQILKKAVSIQHER-HLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 180 ~~En~~LKe~l~~l~~eN~iLKRAv~IQheR-~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
.+-+..|+.++.+|..|..-+|.=+..++.- .+.....+.|+..|+....+++.+||.||+.|.-|----|.+
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666667777777776666555444322 334556789999999999999999999999999886655543
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.23 E-value=0.065 Score=34.35 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
..|.+|..+ +.++....+||..|++|++.||..|
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357889998 8999999999999999999999876
No 9
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.49 Score=38.26 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQhe-R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+..|+....+|..|.--+|.=+.-++. -.+..-..+.|+.+|+.....|+.+||.||+.|.-|----|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 456777777777777777766655432 23344557899999999999999999999999998865544
No 10
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.84 E-value=0.068 Score=40.12 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..| +++...+.+||..|++|++.|+..|..
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568899988 789999999999999999999999876
No 11
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.44 E-value=0.16 Score=35.24 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=32.1
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 14 ~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 458999998 78 9999999999999999999998854
No 12
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.43 E-value=0.14 Score=35.61 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=32.0
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347888888 67 9999999999999999999999876
No 13
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.41 E-value=0.43 Score=34.50 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=40.5
Q ss_pred CCcccccCCCCCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhc
Q 024453 24 AKRSRCSTFGSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (267)
Q Consensus 24 sKR~Rcsss~sp~r~~~~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (267)
+||.+-.... ....+..|.+|..| ++++....+||..||| |++.|+.-|.+
T Consensus 6 ~~r~~t~~ya---~~~~e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 6 SGRNRQQRPG---TIKHGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSCCSCCSSC---SSSCCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred ccchhhhccc---ccCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6776543322 22346789999998 7889999999999998 99999999976
No 14
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.24 E-value=0.099 Score=39.78 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=35.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+++.|+..||.+...||...+-+.++++|+.|..|.+
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4899999999999999999999999999999999976
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.15 E-value=0.15 Score=38.41 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=31.6
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|.+|..| ++ |.+...+||..+++|++.||..|..
T Consensus 31 ~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357888888 54 7899999999999999999999986
No 16
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.12 E-value=0.1 Score=37.38 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..+ +++.....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4568999998 677899999999999999999999977
No 17
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.94 E-value=0.19 Score=33.12 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=30.7
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 6 ~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 347788887 678899999999999999999998754
No 18
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.87 E-value=0.23 Score=34.94 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 42 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~L 80 (267)
.-|.+|..| ++ |.+...+||..|++|++.||..|...
T Consensus 11 ~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 358999998 56 67788999999999999999999863
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.68 E-value=0.26 Score=35.62 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..| +++.....+||..|++|++.|+.-|.+
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568888888 789999999999999999999999876
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.61 E-value=0.34 Score=32.96 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.8
Q ss_pred cHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (267)
-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 10 ~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 47888887 54 7888899999999999999998853
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.21 E-value=0.27 Score=33.72 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=31.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..|.+|..+ +.++....+||..|+||++.|+.-|-+
T Consensus 10 ~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 10 TMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457888888 789999999999999999999998865
No 22
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.32 E-value=0.5 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.0
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357889988 54 7889999999999999999999864
No 23
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.23 E-value=0.48 Score=37.96 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.7
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
-|..|..+ .++++.-...||+.|++||..||..|.+
T Consensus 42 kVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 42 KVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46667777 6889999999999999999999999986
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.00 E-value=4.1 Score=33.50 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred CChhhhHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024453 134 TDGSKWVDLFVHEMMSA---ADLDDARGRAARILEVFERSIITNSKAS-----KELEHASLKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 134 ~~g~eWVEl~V~EM~~A---sd~dDARaRAsRvLEafEksi~~ra~aa-----~~~En~~LKe~l~~l~~eN~iLKRAv~ 205 (267)
..-+..|+-=++||... ..+++-| .+|.+.-.-+ .++++..|.++++.+.+|..-||-=+.
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~r-----------~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAEL-----------RTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777887754 3333332 3444433331 677888899999999888888886433
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 206 IQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 206 IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
--.. .+++..+|+..|+.-+...|+++..||..+
T Consensus 100 ~~~~---k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 100 AAQI---KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 446677888888888888899998888653
No 25
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.91 E-value=0.68 Score=33.53 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 567899999999999999999999999 99999998876444
No 26
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=87.36 E-value=0.28 Score=36.15 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=31.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
...|..||.. -+..-.--.+||++|++||+.||.-|..-
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4568888876 34555567899999999999999999864
No 27
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.43 E-value=0.9 Score=33.22 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=37.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
++.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 556899999999999999999999999 99999999887555
No 28
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.39 E-value=1.4 Score=31.66 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcc-hhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHD-NKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cg-ndlDaAIksL~~ 79 (267)
+..|.+|..+ +++....++||..|| +|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5778999998 778899999999994 899999999987
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.23 E-value=6.4 Score=37.29 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
++...+++..+.+.+++..+++++. +.+++++...+|+..+++.+...++++..|.+.|-.++--+++-++
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEAD---AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhh---hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555542 2345666677888899999999999999999999999877777665
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.02 E-value=1.3 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..| ++++..+++||..|++|++-|+.-|..
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999999 899999999999999999999999987
No 31
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=82.75 E-value=1.5 Score=31.77 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
++.+++++.+||+++...+..-|+.. +++++.|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 45688999999999999999999998 489999987754
No 32
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.63 E-value=2.8 Score=30.26 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (267)
+..|.+|..+ +++.....+||..||| |++.|+.-|.+
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5678999997 7889999999999999 99999999987
No 33
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=81.82 E-value=0.79 Score=31.20 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.|.+|..| ++++..+.+||.+||+|.+.|+.-|-.
T Consensus 7 aI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35667777 788999999999999999999988854
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.20 E-value=1.4 Score=29.47 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4568888887 667799999999997 89999998854
No 35
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.86 E-value=1.8 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhcc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (267)
+..|.+|..| +++....++||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5668999998 7789999999999997 899999999873
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.85 E-value=5.9 Score=27.11 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
|+|.+..+++ ...++..++|.||+..|+-|+--|+
T Consensus 7 eLE~r~k~le---~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLE---NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4555555444 4888889999999999999987664
No 37
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=79.79 E-value=2 Score=31.71 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..+ +++.....+||..||||++.|+.-|.+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5568999988 778999999999999999999999876
No 38
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=79.59 E-value=4.7 Score=30.81 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=32.8
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 024453 209 ERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 253 (267)
Q Consensus 209 eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 253 (267)
+|.+.+.+.-.|..+|.+.+.+.++.|.+|+..|--|.--+.+++
T Consensus 24 ~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 24 QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777778888888888888888887777766655554
No 39
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.80 E-value=1.5 Score=32.41 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
-|.+|+.+ | .|.+...+||.+|++|++.||..|..
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47778776 3 57888899999999999999999987
No 40
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.56 E-value=2.3 Score=32.44 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (267)
+..|.+|..+ +++++..++||..|++|++.|+.-|-+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 4568889998 7788999999999999999999999885443
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.39 E-value=33 Score=36.49 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
+++|+..|+++++.+.+|+..|+....--.++.+ .......|++.|+|.+++-...+.+.+.
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888777665321111111 1112344555555555555555555543
No 42
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=78.24 E-value=3.4 Score=27.47 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
.+++.|..-++-|=++||.||+.|-.|...+.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999999876654
No 43
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.31 E-value=11 Score=27.16 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=23.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024453 168 ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSI 206 (267)
Q Consensus 168 Eksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~I 206 (267)
|||++.-+-+ ||-|+..|.+||.-||+++--
T Consensus 5 EKSlVDtVYa--------LkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 5 SKSLVDTVYA--------LKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655 788888888888888888743
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.10 E-value=5.9 Score=30.49 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 024453 185 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (267)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEq 234 (267)
.+...+..|..||..|+.=|. ....|++.|++++.|..++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcHH
Confidence 345556666666666654332 3446666666666665554
No 45
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.28 E-value=3.4 Score=31.31 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..| +++.....+||..|++|++.|+.-|.+
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999998 888999999999999999999999987
No 46
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.26 E-value=16 Score=27.88 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=32.4
Q ss_pred HHHHHHHhhHHHH---HHHHHHHH--------HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 188 EHLQSLLNDNQIL---KKAVSIQH--------ERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 188 e~l~~l~~eN~iL---KRAv~IQh--------eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.+++.|+.||.=| |.|+.|.- +-..|++....|+..+++.....+++|+.||.
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666544 45555543 33446677788888888888999999888885
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.24 E-value=12 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~ 205 (267)
+.+||..|+.+++.|..|...||..|.
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999887664
No 48
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.85 E-value=47 Score=32.44 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
++.|...|+.+...+.++.+-+|+ ...+.++.-.|+..||..+...+++++.+|..-+.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444443 12244556667777777777777777777665443
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.67 E-value=8.2 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+..||..|++++..|..||..||
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666666666655543
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.64 E-value=6.1 Score=28.29 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
-..+...|..+++.|..+|.-|+.=+ +....|++.||+++.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 44466667777777777777776433 333466777777664
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.46 E-value=10 Score=27.95 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 198 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (267)
Q Consensus 198 ~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~ 237 (267)
.||+.|+..=..-+.+.+....|+..|++...+.+.+|..
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777643333333333344444444444444444433
No 52
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=68.36 E-value=6.1 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..+|.+|+.|----|+++|..||.++..||..|+--|.+
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 457899999999999999999999999999999999887
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.00 E-value=34 Score=32.28 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQH 208 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQh 208 (267)
...++++++.+.+|+.-|++-+..+-
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 33334444444444444444444433
No 54
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=67.84 E-value=4.9 Score=31.79 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+..|.+|..+ +.+.....+||..||||++.|+.-|-.
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5568999988 778999999999999999999999976
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.21 E-value=7.6 Score=29.87 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 220 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 220 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
+++.|.--++-|=++||.||+.|-.|...+++-++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888999999999999999999887776554
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.12 E-value=5.9 Score=29.92 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+..||..|+.+++.|..|...||
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444444
No 57
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.41 E-value=8.4 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLE 239 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE 239 (267)
++++.+||..-...++|||+||
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 4556666666667777777776
No 58
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=66.35 E-value=56 Score=27.16 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 157 RGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 157 RaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 236 (267)
|..+.++++.||.++.- +..-|..|..+++.=.+=...|..+...|.+ .+.+.+..+..|++++.
T Consensus 67 k~~~e~l~~~veeA~~~-----L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~----------~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 67 KEAAERLSKTVDEACLL-----LAEYNGRLAAELEDRRQLARMLVEYTQNQKD----------VLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 55666677777766554 3333444444443333333445544444442 22333344555555555
Q ss_pred HHHhhhHHHHHHH
Q 024453 237 NLELRNYALKLHL 249 (267)
Q Consensus 237 ~LE~~NYaL~~HL 249 (267)
++..-.==|.-|+
T Consensus 132 rv~~vkkeL~~hi 144 (152)
T 4fla_A 132 RVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5444444444444
No 59
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.30 E-value=32 Score=24.42 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKA 203 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRA 203 (267)
+.+||..|+.++..|.+|+..||.-
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666544
No 60
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=65.90 E-value=4.8 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=29.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.|..|..+ +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578999999999999999999998754
No 61
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=65.18 E-value=45 Score=31.54 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 258 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 258 (267)
+.++...++.+++.|..+.+.+-+.+.. +.+ .+.+.|+..+.+..++|+.||..-+.+.--|..... .+
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i 101 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APP------EEKEALIARGKALGEEAKRLEEALREKEARLEALLL--QV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hC
Confidence 5556677777777777777777776654 221 123344455555555666666666655555553332 36
Q ss_pred CCCCCCCC
Q 024453 259 PRQFHPDI 266 (267)
Q Consensus 259 ~g~f~PDV 266 (267)
|-.-||||
T Consensus 102 pN~~~~~v 109 (421)
T 1ses_A 102 PLPPWPGA 109 (421)
T ss_dssp CCCCCTTS
T ss_pred CCCCCCCC
Confidence 66666665
No 62
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=65.10 E-value=4.5 Score=32.32 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=30.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|.+|+.|= -.|.+...+||..|+.|++.||..|..
T Consensus 68 ~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 68 PQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3577788761 136789999999999999999999976
No 63
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.85 E-value=26 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLK 201 (267)
+||+-|.++++.+..|+..||
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666655554
No 64
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.97 E-value=72 Score=30.54 Aligned_cols=79 Identities=9% Similarity=0.168 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 258 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 258 (267)
+.++...++.+++.|..+.+.+-+.+..--....+.++.-.|+..||..+...+++++.+|. -|.... ..+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~i 106 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK-------KIDYYL--WRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HhC
Confidence 34445555555555555555555554421111123344445555555555555555555554 343322 236
Q ss_pred CCCCCCCC
Q 024453 259 PRQFHPDI 266 (267)
Q Consensus 259 ~g~f~PDV 266 (267)
|-.-||||
T Consensus 107 pN~~~~~v 114 (455)
T 2dq0_A 107 PNITHPSV 114 (455)
T ss_dssp CCCCCTTS
T ss_pred CCCCCccC
Confidence 66666665
No 65
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=62.52 E-value=25 Score=27.13 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=18.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 024453 210 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 246 (267)
Q Consensus 210 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 246 (267)
|++.+++.-+|..+|.+.+.+-++.|.+|...|--|.
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555554443
No 66
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=61.67 E-value=25 Score=30.81 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 236 (267)
++.||.+|.++++....|+.-| ..+++.||.-...++.++.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L-----------------~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQL-----------------QKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhhhhhhhHHH
Confidence 5666666666666444444443 4445555555555555554
No 67
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=61.45 E-value=1.2e+02 Score=29.91 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 024453 155 DARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 234 (267)
Q Consensus 155 DARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEq 234 (267)
+.+..=+.+-+++|+.+.+ .+.+|+.+|.+.+++.+.|.-.|-...- +++.-++++...++-++.|+.+
T Consensus 20 rvqkana~aka~Ye~~~ae-----~~a~n~~i~aeNeaikkrNa~aka~Ye~------~l~kY~~dlakY~~~~AeY~~k 88 (497)
T 3iox_A 20 RVQKANADAKAAYEAAVAA-----NNAANAALTAENTAIKKRNADAKADYEA------KLAKYQADLAKYQKDLADYPVK 88 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566777777766 3444555555555555555555443322 1122234444555555566555
Q ss_pred HHHHHh
Q 024453 235 ARNLEL 240 (267)
Q Consensus 235 ir~LE~ 240 (267)
+.+-|.
T Consensus 89 l~aYe~ 94 (497)
T 3iox_A 89 LKAYED 94 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 68
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=61.27 E-value=19 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+++++..|++.+..|..+|.-||
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444
No 69
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=60.25 E-value=4.3 Score=35.58 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHhhcchhHHHHHHHHhccccccchh
Q 024453 59 VKSVLGEHDNKIEDAIDRLRVLSFSNISE 87 (267)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa~~ 87 (267)
-.+||++|++|+|.||+-|..--+..+..
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akAaK 49 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKAAK 49 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchhhH
Confidence 46899999999999999999855544443
No 70
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.23 E-value=27 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
.=+||+-|.++++.+-.|+..||
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577777777777777766665
No 71
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=58.77 E-value=6.7 Score=34.77 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 024453 195 NDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (267)
Q Consensus 195 ~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 228 (267)
+||.-||+=++....+..+++...+|+++||+++
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444455556666666654
No 72
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.88 E-value=6.2 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|+.|-.+ +..++...+||.+|||||+.|..-|-.
T Consensus 23 V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 23 VETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5555554 467888999999999999999998866
No 73
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=57.78 E-value=4.8 Score=36.95 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHhhcchhHHHHHHHHhc
Q 024453 59 VKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 59 le~aLe~cgndlDaAIksL~~ 79 (267)
-.+||++|++|+|.||+-|..
T Consensus 22 CKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 22 CKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 579999999999999999987
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.47 E-value=87 Score=26.45 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=24.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 210 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 210 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
+.+..+..+.|+..|+-.+..-+++++.|+.-|--|
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556777777778888888888888866433
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=56.38 E-value=8.1 Score=25.10 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=28.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 43 ~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
++.++..+ -+.++..-...|+.|+.||+.||..+.+
T Consensus 8 ~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 8 ALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35555554 4678999999999999999999987754
No 76
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.49 E-value=22 Score=26.71 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 230 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q 230 (267)
-...+.+....|..||..|+.=|. ....|+..||+++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 344567788888999998886543 345778888777654
No 77
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.12 E-value=99 Score=32.74 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=8.3
Q ss_pred CCHHHHHHHHhhcc
Q 024453 54 VDPEVVKSVLGEHD 67 (267)
Q Consensus 54 md~q~le~aLe~cg 67 (267)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 45666666666555
No 78
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.90 E-value=16 Score=27.55 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (267)
+..|.+|..| +++.....+||..++| |++.|+.-|..
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999998 7888999999999874 99999999987
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.81 E-value=93 Score=28.78 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 217 KEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
.+.|...+++....+|+++..|+..|--|..-+++.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 445555677899999999999999888877666544
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.65 E-value=55 Score=22.73 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 228 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 228 (267)
.....|..+++.|..+|.-|+.=| .....|+.+||+++
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i----------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEV----------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 345556666666666666665432 22345555666554
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.98 E-value=16 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
++.||..||.+++.|..++.-||+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877776
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=51.18 E-value=13 Score=28.39 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
.||.-||..+....+++..||..|.-|+-+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566788888888888888999888888764
No 83
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.14 E-value=12 Score=26.63 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=29.7
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 43 ~~~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
.+.+|+.+ | .|.+.-.++|..+|.|++.||..|..+
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45666665 3 388999999999999999999999874
No 84
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.23 E-value=84 Score=27.28 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024453 217 KEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 217 ~~~E~~~Lkql~~qyqEqir 236 (267)
...++..+++.+..|++++.
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666654
No 85
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=49.57 E-value=16 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=32.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
+-|++|-.+ +.|.+-+.+||..++||+|-|.--|.+..+
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 347777776 789999999999999999999998887543
No 86
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=49.34 E-value=12 Score=29.43 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
++-+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3334333 36667778899999999999999876
No 87
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.50 E-value=18 Score=23.07 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
+.+|...||..+..|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555444443
No 88
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=48.29 E-value=16 Score=25.89 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
=+|-.+-=++.|+++|=|++.||+.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4688888999999999999999999998864
No 89
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.14 E-value=29 Score=22.12 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 024453 182 EHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKR 202 (267)
|...||+.+..|.+|..-||=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888887774
No 90
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=47.88 E-value=13 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
..+|.+|..+ +.+...+.+||..||||.+.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3456777776 5668899999999999999999999874
No 91
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.70 E-value=73 Score=22.64 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv 204 (267)
|-.|++.|.+||..|+|-+
T Consensus 8 L~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4557777777777777644
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.33 E-value=2e+02 Score=27.98 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCCC
Q 024453 215 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPDI 266 (267)
Q Consensus 215 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~f~PDV 266 (267)
++.-.|+..||..+...+++++.+|..-+.+ . ..+|-.-||||
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~-------l--~~iPN~~~~~v 161 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLR-------A--LRLPNQTHPDV 161 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--TTSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HhCCCCCCCCC
Confidence 3444555666666666666666555544432 1 23555556655
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.37 E-value=87 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=10.7
Q ss_pred CCHHHHHHHHhhcchhHH
Q 024453 54 VDPEVVKSVLGEHDNKIE 71 (267)
Q Consensus 54 md~q~le~aLe~cgndlD 71 (267)
+|..+|-.=|.-|| .|+
T Consensus 673 fd~~~V~~QLr~~G-vlE 689 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG-VLE 689 (1080)
T ss_dssp CCHHHHHHHHHTTT-HHH
T ss_pred cCHHhhHHHHhhcc-cHH
Confidence 56666666666666 444
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.19 E-value=92 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024453 180 ELEHASLKEHLQSLLNDNQILKKAVSI 206 (267)
Q Consensus 180 ~~En~~LKe~l~~l~~eN~iLKRAv~I 206 (267)
..+...|++.++.|-+||.=|++=+.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777665444
No 95
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=46.08 E-value=66 Score=23.46 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHhh
Q 024453 186 LKEHLQSLLNDNQILKKAVS-IQHERH 211 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~-IQheR~ 211 (267)
||-++..|.+||.-+|+.+. +||.|.
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk 38 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARK 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777778887777774 555443
No 96
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.00 E-value=1.2e+02 Score=24.48 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 196 DNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 196 eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
...+||-=+.|.-.... |-.+ ...+..-..+|++|++.|...|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERad----REkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHA----REKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhh----HHHHHhHHHHHHHHHHHHHHHH
Confidence 44555555555443332 1111 1123334566777777776655
No 97
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.64 E-value=4.3 Score=33.61 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhccccc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (267)
..+|-+|+.|==-=|+++|..||.+|..||.-|+--|.+=+..
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 6688999999888899999999999999999999999874443
No 98
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=45.01 E-value=54 Score=25.55 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhh
Q 024453 227 VISQYQDQARNLELR 241 (267)
Q Consensus 227 l~~qyqEqir~LE~~ 241 (267)
+-.+|+|.|.+|-..
T Consensus 69 mKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888887544
No 99
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.91 E-value=63 Score=24.24 Aligned_cols=8 Identities=63% Similarity=0.684 Sum_probs=5.9
Q ss_pred HHHHHHHH
Q 024453 198 QILKKAVS 205 (267)
Q Consensus 198 ~iLKRAv~ 205 (267)
.||++|+.
T Consensus 45 ~iL~~A~~ 52 (88)
T 1nkp_A 45 VILKKATA 52 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67888775
No 100
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=44.43 E-value=1.9e+02 Score=26.52 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhhH
Q 024453 182 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL------------------LKLVISQYQDQARNLELRNY 243 (267)
Q Consensus 182 En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~------------------Lkql~~qyqEqir~LE~~NY 243 (267)
-...+.++++.++.++..-+.+-.+++.-++.+++.+.-+.+ |...++|-+.+|+.||-..-
T Consensus 374 al~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT 453 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777777777766654333332 34456666666777766666
Q ss_pred HHHHHHHH
Q 024453 244 ALKLHLQR 251 (267)
Q Consensus 244 aL~~HL~q 251 (267)
.|--.|+.
T Consensus 454 ~~~~~~~~ 461 (471)
T 3mq9_A 454 TLNHKLQD 461 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555553
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.15 E-value=36 Score=23.85 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 024453 181 LEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 181 ~En~~LKe~l~~l~~eN~iLKR 202 (267)
.....|...++.|..+|.-|+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665553
No 102
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.23 E-value=84 Score=22.07 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
-......|..+++.|..+|.-|+.-| .....|+.+|++++.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 44566777778888888888777644 234566777776653
No 103
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.79 E-value=24 Score=25.13 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
+.+|-.+ +.|.+-+.+||..++||+|.|.--|.+.
T Consensus 13 I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 13 IERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 6777776 7899999999999999999999988764
No 104
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.89 E-value=83 Score=22.68 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=16.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 024453 189 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 229 (267)
Q Consensus 189 ~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 229 (267)
|+.+|..-|.-| |-.|||- ...+-++.||...|..++-
T Consensus 12 q~~kLKq~n~~L--~~kv~~L-e~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 12 QLLRLKQMNVQL--AAKIQHL-EFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444554444433 3334442 2233345555555555443
No 105
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=41.10 E-value=56 Score=20.88 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 218 EKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
..++..|.-+|...|+++.+||..-
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999764
No 106
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.95 E-value=6.8 Score=27.11 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999999988774
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.71 E-value=48 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
|++...+|++.||+.+..-.+++..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444
No 108
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.17 E-value=68 Score=23.73 Aligned_cols=8 Identities=38% Similarity=0.372 Sum_probs=5.8
Q ss_pred HHHHHHHH
Q 024453 198 QILKKAVS 205 (267)
Q Consensus 198 ~iLKRAv~ 205 (267)
.||++|..
T Consensus 40 ~iL~kA~~ 47 (80)
T 1nlw_A 40 SLLTKAKL 47 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777775
No 109
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.74 E-value=27 Score=25.11 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.3
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.++.++..+ -+-++.+-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456666665 6789999999999999999999998865
No 110
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.73 E-value=26 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
+.+|.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4557777765 5788999999999999999999988765
No 111
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.54 E-value=76 Score=21.01 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYAL 245 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL 245 (267)
-+|..+|-.-+.|-+|+|.+|...|--|
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566667777777778888877777654
No 112
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.91 E-value=1.7e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 214 QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
.++..-|+..|+|.+-..-+.|.+|-..|-.|..|..-.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 455567888999999999999999999999999987643
No 113
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=36.89 E-value=15 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (267)
++.++|+.+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 4678999999999999999988774
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.54 E-value=1e+02 Score=21.27 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 183 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 183 n~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
|+-|+..+.+|.++|--|. |- -|.|..+++...+.|-+||-
T Consensus 5 naylrkkiarlkkdnlqle--------rd---------eqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLE--------RD---------EQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhh--------hh---------HhhHHHHHHHHHHHHHHHHH
Confidence 5667888888888875443 32 23567788888888888874
No 115
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=36.42 E-value=59 Score=28.62 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 212 LEQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 212 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
++++....++...+..+...+.+++.++..
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666666655543
No 116
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.01 E-value=33 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 41 ~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..+|.++..+=---|+..-..+|+.++-||+.||..+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446777777655478999999999999999999998876
No 117
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=35.86 E-value=37 Score=28.67 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|..|..+ +.|+.-+..||..|+.|++.|+..|-.
T Consensus 167 V~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 167 IENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4444444 778888899999999999999988753
No 118
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.26 E-value=1.7e+02 Score=23.65 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
|+-+|++|.++...+.+..-.= +++=.-+..+|+.+ +...|...+..+|.
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~k--klqLkse~e~E~ae---~k~KYD~~lqe~es 86 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEK--KSILKAELERKMAE---VQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 5667777777777666654321 22222234566666 44566666666663
No 119
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=34.97 E-value=40 Score=28.80 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.-|..|..| +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 347889888 899999999999999999999988865
No 120
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=34.88 E-value=35 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
+.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 15 Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 6789999999999999999999888763
No 121
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=34.23 E-value=36 Score=30.35 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
++..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999999998773
No 122
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.20 E-value=2.3e+02 Score=28.47 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNY 243 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NY 243 (267)
.+.++.|+..|..-..+|++||+..-
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666667777776543
No 123
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=34.12 E-value=42 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024453 216 QKEKEVELLKLVISQYQDQARNLELRNYA 244 (267)
Q Consensus 216 ~~~~E~~~Lkql~~qyqEqir~LE~~NYa 244 (267)
+.-.|+..||..+...+++++.+|..-+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666654443
No 124
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=34.06 E-value=24 Score=27.79 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=29.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhc
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (267)
..|.+|..| +.+....++||..||| |++.|+.-|..
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345666664 5556889999999998 99999999977
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.01 E-value=47 Score=30.09 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSL------------LNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 179 ~~~En~~LKe~l~~l------------~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
++.|...|.+++... +++-..--+.+.+|+++. ..+++.+++.+.+++++|.+|
T Consensus 29 ~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L------~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 29 LRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKL------METLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTTHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
No 126
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.16 E-value=1.8e+02 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHhc
Q 024453 135 DGSKWVDLFVHEMMS 149 (267)
Q Consensus 135 ~g~eWVEl~V~EM~~ 149 (267)
+-..|-..=+.||..
T Consensus 10 eaE~~y~~K~eel~~ 24 (131)
T 3tnu_A 10 DAEEWFFTKTEELNR 24 (131)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455444444443
No 127
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.85 E-value=2.9 Score=30.61 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSI 206 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~I 206 (267)
..+|+..|+.++..|..||.+||.+..-
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~~ 91 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCLE 91 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999987543
No 128
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=32.52 E-value=31 Score=24.37 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHhhcchhHHHHHHHHhcc
Q 024453 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L 80 (267)
-+|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36888889999999999999999999996
No 129
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.03 E-value=1.1e+02 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024453 213 EQEQKEKEVELLKLVISQYQDQARNLELR 241 (267)
Q Consensus 213 e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 241 (267)
.++...+|...-++.+..||.+++.||..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788888889999999999999864
No 130
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.01 E-value=3.3e+02 Score=26.42 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
++.+...|+.+...+.++.+-+|+
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666666665555
No 131
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.86 E-value=2.8e+02 Score=27.83 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHHHhhcchhHHHHHHHHhccccccchhhhccCCCCCcccCCCCCCCCCCcccCCCCchhhhccccccccCcCCCChh
Q 024453 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHTNFCGENITDGS 137 (267)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~L~L~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~ 137 (267)
.|...|..-+-||..-|.-|++. |..-+.+. .+-.
T Consensus 50 rLQglLdkqErDltkrINELKnq-LEdlsKns--------------------------------------------Kdse 84 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNS-LFEYQKNN--------------------------------------------KDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHH--------------------------------------------HHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHH-HHHHHhhc--------------------------------------------hhHH
Confidence 47788888899999999999883 32222211 2345
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHH
Q 024453 138 KWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 216 (267)
Q Consensus 138 eWVEl~V~EM~~Asd~dDARaRAsRvLEafEksi~~ra~aa~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~ 216 (267)
.|+..++.++- .|....- ..+-.+.+-+.. |.+-+..||+.|..-+...++|+..|.-|+.-+|-+|.
T Consensus 85 qy~k~~~E~Lr---------~rq~q~~-dNdNtynE~S~E-LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 85 SLTTNIMEILR---------GDFSSAN-NRDNTYNRVSED-LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHTTS---------SHHHHHH-HHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------HHHHhhh-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766665542 2333332 344444443333 67777788888888888889999999999877766653
No 132
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.86 E-value=2.7e+02 Score=24.06 Aligned_cols=52 Identities=8% Similarity=0.287 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhHhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLN-----DNQILKKAVSIQHERHLEQEQKEKEVELLK-LVISQYQDQARN 237 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~E~~~Lk-ql~~qyqEqir~ 237 (267)
++.++..|++|++.+++ |+.++++=+.+-|+.. .-+.+|+ +++.+.||.-+.
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK-------~KIR~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKK-------TKIRSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHhhhh
Confidence 45556666677776654 6778888888888655 3344444 455555554443
No 133
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.83 E-value=51 Score=25.09 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 024453 179 KELEHASLKEHLQSLLNDNQ 198 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~ 198 (267)
..+|...||++|..|...|.
T Consensus 13 VREEVevLKe~I~EL~e~~~ 32 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNS 32 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566667777666655443
No 134
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=29.82 E-value=2.3e+02 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024453 224 LKLVISQYQDQARNLELR 241 (267)
Q Consensus 224 Lkql~~qyqEqir~LE~~ 241 (267)
+..+.....++|..+-.+
T Consensus 79 i~~v~~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 79 LEEVRRRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhhhCC
Confidence 344556666666666554
No 135
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=29.78 E-value=43 Score=28.99 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHhcC------CCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 44 VSFLLQMF------PDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 44 ~~~L~~lF------P~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
|.+|+..+ +.+|+..|-+.|.+|..|++.|.+.|.+
T Consensus 34 l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 34 LAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp HHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55665432 4589999999999999999999999976
No 136
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.77 E-value=1.4e+02 Score=26.04 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=31.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024453 190 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 242 (267)
Q Consensus 190 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 242 (267)
+..|..||..|.. +.+.+.+|+..|+..++--.++++.++..+
T Consensus 22 V~~L~~En~~L~~----------ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 22 VANLVNENFVLSE----------KLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4567777777754 335678889998888888888888766443
No 137
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.64 E-value=71 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
-+.....|..+++.|..+|.-|+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777665
No 138
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.51 E-value=1.3e+02 Score=20.37 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv 204 (267)
++.=|..|.+.+--|.+||..|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 55667778888888888888887654
No 139
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=29.43 E-value=2.1e+02 Score=22.63 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024453 223 LLKLVISQYQDQARNLE 239 (267)
Q Consensus 223 ~Lkql~~qyqEqir~LE 239 (267)
.+..-+..+++++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFE 96 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 140
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.38 E-value=33 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKK 202 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKR 202 (267)
+|++...+++.+..|..||..||-
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777653
No 141
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.99 E-value=2.1e+02 Score=22.43 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=6.3
Q ss_pred HHHHHhhHHHHHHHH
Q 024453 190 LQSLLNDNQILKKAV 204 (267)
Q Consensus 190 l~~l~~eN~iLKRAv 204 (267)
++.+...|.-|.+.+
T Consensus 52 l~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 52 IDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 333344444444444
No 142
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.85 E-value=1.6e+02 Score=21.91 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 232 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyq 232 (267)
|+..+..-..|-.-..--+...-.|. +++..+++.|+-.+++||
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L---~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELEL---DQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
No 143
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=28.78 E-value=86 Score=22.72 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHH
Q 024453 186 LKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQ 232 (267)
Q Consensus 186 LKe~l~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyq 232 (267)
|.|+++.++..-.++--+=.-+.+|.+ =+.+.+.-.|-|.-|+++|.
T Consensus 8 Lee~le~Iisgaa~~Ads~~tr~~rke~Iv~eCnavrqALQdLlsEY~ 55 (59)
T 4e18_B 8 LEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666655555444444444443 24566777778888999996
No 144
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.59 E-value=26 Score=28.24 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 024453 183 HASLKEHLQSLLND 196 (267)
Q Consensus 183 n~~LKe~l~~l~~e 196 (267)
+.+||.|++....+
T Consensus 64 I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 64 VPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 145
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=28.43 E-value=12 Score=32.09 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=42.8
Q ss_pred ccccccccccCCCCC-CCC---CCcccccCCCCCCC----------------CCCCCcHHHHHhcCCC--CCHHHHHHHH
Q 024453 6 CGKRVGFEEICGSSS-PTS---AKRSRCSTFGSLVR----------------SGSDDPVSFLLQMFPD--VDPEVVKSVL 63 (267)
Q Consensus 6 cGkrs~fedl~~s~~-p~~---sKR~Rcsss~sp~r----------------~~~~~~~~~L~~lFP~--md~q~le~aL 63 (267)
+|-=..|++|+|..- |.+ --|.||.++ |++- .++++|-+.|..+||| .|++-|++.
T Consensus 24 ~GPv~~F~~LfPa~Y~~~ta~FltR~R~~~~-S~~P~P~~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n~ei~~~- 101 (160)
T 4a5u_A 24 IGPVLPFEELHPRRYPENTATFLTRLRSLPS-NHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTL- 101 (160)
T ss_dssp EEEEEEHHHHSCCCCCTTSSCSEEEEECSCC-CCCCCCSSCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSSHHHHHH-
T ss_pred cCccccHHhhCCcccCCCCccccccccCCCC-CCCCCcchhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCchhhhhc-
Confidence 454468889887642 332 279999776 4333 3337778889999998 555554432
Q ss_pred hhcchhHHHHHHHHhcc
Q 024453 64 GEHDNKIEDAIDRLRVL 80 (267)
Q Consensus 64 e~cgndlDaAIksL~~L 80 (267)
. -.-|.=.|.-....+
T Consensus 102 G-LSTDhltaLa~~~~~ 117 (160)
T 4a5u_A 102 G-LSTEHLTALAHLYNF 117 (160)
T ss_dssp C-CCHHHHHHHHHHHTE
T ss_pred C-CcHHHHHHHHHHHhe
Confidence 1 112444555555555
No 146
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.42 E-value=1.6e+02 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 214 QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
-|....|..+||+-+..---||-.||-...-+.--|++.+.
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 35566788899999999999999999988888888887763
No 147
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=28.30 E-value=52 Score=22.25 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=25.2
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHH
Q 024453 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDR 76 (267)
Q Consensus 42 ~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIks 76 (267)
.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34555555433334589999999999999999854
No 148
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=27.58 E-value=2e+02 Score=21.86 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q 024453 198 QILKKAVSI 206 (267)
Q Consensus 198 ~iLKRAv~I 206 (267)
+|||++|-.
T Consensus 32 ~IL~ksvdY 40 (83)
T 4ath_A 32 TILKASVDY 40 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 689999864
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.39 E-value=76 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 218 EKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 218 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
..=+.+|++.+..+++++..|...|..|...|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777788888888888877775
No 150
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.30 E-value=16 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
...++.++|+.+|+.| .+...|.+.|.
T Consensus 18 l~~~Er~~I~~aL~~~-gn~~~aA~~LG 44 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY-PSTRKLAQRLG 44 (61)
T ss_dssp CSHHHHHHHHHHHHHS-CSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHhC
Confidence 3456788999999999 56777766653
No 151
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.18 E-value=1.6e+02 Score=20.36 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 024453 197 NQILKKAVSIQHERHL--E-QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 249 (267)
Q Consensus 197 N~iLKRAv~IQheR~~--e-~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 249 (267)
....++=++-+-.|++ + .++...++..|...-..-+.+|..|+..+..|...|
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566655543 2 233566666777777777777777777777766554
No 152
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.91 E-value=1.5e+02 Score=21.75 Aligned_cols=8 Identities=38% Similarity=0.783 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 024453 198 QILKKAVS 205 (267)
Q Consensus 198 ~iLKRAv~ 205 (267)
.||+.|+.
T Consensus 43 ~IL~~Ai~ 50 (82)
T 1am9_A 43 AVLRKAID 50 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555553
No 153
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=26.90 E-value=46 Score=23.95 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhcccc
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (267)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.-.
T Consensus 11 Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 11 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 4555544 789999999999999999999999988644
No 154
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.69 E-value=18 Score=26.76 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
.++.++|+.+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999988888764
No 155
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.57 E-value=1.8e+02 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv 204 (267)
||+++..|++.+..|..||.-||..+
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998887643
No 156
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.49 E-value=97 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 024453 178 SKELEHASLKEHLQSLLNDNQILKKAV 204 (267)
Q Consensus 178 a~~~En~~LKe~l~~l~~eN~iLKRAv 204 (267)
++++|....|+++..|..+..-||-.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888877777766665433
No 157
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=25.44 E-value=84 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILK 201 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLK 201 (267)
+|+|...-.+++.+|..||.-|+
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 55555555666666666665443
No 158
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.50 E-value=48 Score=29.24 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 024453 179 KELEHASLKEHLQSLLND 196 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~e 196 (267)
+++||..||+++..|..+
T Consensus 24 l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQL 41 (255)
T ss_dssp --CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555444433
No 159
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.45 E-value=2.4e+02 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=16.4
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 209 ERHLEQEQKEKEVELLKLVISQYQDQARN 237 (267)
Q Consensus 209 eR~~e~e~~~~E~~~Lkql~~qyqEqir~ 237 (267)
.+.+|++.+++++.+ -+.+-+++++.
T Consensus 45 skL~eae~rn~eL~~---e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEA---HVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 477888888887755 44444444444
No 160
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.37 E-value=34 Score=26.13 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
.++.++|+.+|+.||.++..|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 45678899999999999999988764
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.17 E-value=4.4e+02 Score=24.85 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=53.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 024453 150 AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLV 227 (267)
Q Consensus 150 Asd~dDARaRAsRvLEafEksi~~ra~a-a-~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql 227 (267)
-.+.++|..=..|+|+.+|+..-..--. + .---...+-...+.+.+--..++||+.|.-.-.-.- --.+..++.+
T Consensus 364 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---Hp~~~~~~~~ 440 (490)
T 3n71_A 364 LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---HPITKDLEAM 440 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---SHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---ChHHHHHHHH
Confidence 3566666666667777666653321111 1 000111111222334444567888888865433211 1233344467
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC
Q 024453 228 ISQYQDQARNLELRNYALKLHLQRAQESSSIPR 260 (267)
Q Consensus 228 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g 260 (267)
+.|.+..++..+++-+-+..-...|.++..|..
T Consensus 441 l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 441 RMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 777777777777666666665555655554443
No 162
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=23.61 E-value=1.7e+02 Score=23.42 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQH 208 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQh 208 (267)
+.++...|..++..+.++-..||+|+.|-.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~ 34 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEA 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888899999988754
No 163
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.38 E-value=2.8e+02 Score=21.98 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHHHHhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 167 FERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 238 (267)
Q Consensus 167 fEksi~~ra~a-----a~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 238 (267)
|-|+++..|-= ++.=+..-||-.++.+-....-|+| ++.++.+++..+|..++.-+.++..|
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666554322 1444666666666666666655554 44555566666665555555555443
No 164
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=22.58 E-value=1.7e+02 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=21.3
Q ss_pred CCChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 024453 133 ITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFER 169 (267)
Q Consensus 133 ~~~g~eWVEl~V~EM~~Asd~dDARaRAsRvLEafEk 169 (267)
+.||..|++.|++| + +.=|-||+++=|-
T Consensus 50 l~DGd~fL~~Lmre-----~----~~LAlRIMeVR~~ 77 (147)
T 2py8_A 50 IQNGETFLTELLDE-----N----KELVLRILAVRED 77 (147)
T ss_dssp CSSHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhh-----C----HHHHHHHHHHHHH
Confidence 48999999999998 2 3448888876443
No 165
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.55 E-value=2.5e+02 Score=21.19 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024453 200 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 237 (267)
Q Consensus 200 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~ 237 (267)
|++-=.|--+|..+++...++..+-...+.+|.++|..
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455677777777777777777788889888875
No 166
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.48 E-value=2.6e+02 Score=21.26 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 250 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 250 (267)
+..|-..|.++|..|-+++..|...+...-.-....+ .--++...++.-+.++++..+.|+...---..||.
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666555543332221111 12355666666777777777777765544445553
No 167
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.14 E-value=2.5e+02 Score=21.07 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 024453 185 SLKEHLQSLLNDNQILKKAVS 205 (267)
Q Consensus 185 ~LKe~l~~l~~eN~iLKRAv~ 205 (267)
.+-++++.+-.+|.-|+.=|.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~ 30 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLR 30 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 333444444444444444443
No 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.08 E-value=3.5e+02 Score=28.64 Aligned_cols=15 Identities=7% Similarity=-0.203 Sum_probs=6.9
Q ss_pred CCCCCCCCcHHHHHh
Q 024453 35 LVRSGSDDPVSFLLQ 49 (267)
Q Consensus 35 p~r~~~~~~~~~L~~ 49 (267)
|-.|+++..++||+.
T Consensus 692 p~~fd~~~V~~QLr~ 706 (1184)
T 1i84_S 692 AGKLDAHLVLEQLRC 706 (1184)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhh
Confidence 334554444455543
No 169
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.80 E-value=1.7e+02 Score=19.04 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhHHHH
Q 024453 186 LKEHLQSLLNDNQIL 200 (267)
Q Consensus 186 LKe~l~~l~~eN~iL 200 (267)
|...++.|+.+|..|
T Consensus 6 LE~kVEeLl~~n~~L 20 (34)
T 2oxj_A 6 LEXKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhH
Confidence 334445555555444
No 170
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.62 E-value=1.8e+02 Score=21.54 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 024453 219 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 254 (267)
Q Consensus 219 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 254 (267)
.-+.+|.+.|.+-|.+|.+|+...-.|.-.|+....
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566667777777777777777667666665443
No 171
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.54 E-value=46 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCchHHH-----HHHHHHHHHHHHH
Q 024453 140 VDLFVHEMMSAADLDDAR-----GRAARILEVFERS 170 (267)
Q Consensus 140 VEl~V~EM~~Asd~dDAR-----aRAsRvLEafEks 170 (267)
|++++..=..++++-.-| +||+|++|.+|..
T Consensus 16 ~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 16 VRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA 51 (73)
T ss_dssp HHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence 444444333334444433 7999999999973
No 172
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=21.20 E-value=1e+02 Score=21.80 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 024453 34 SLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (267)
Q Consensus 34 sp~r~~~~~~~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (267)
.|.-+-|++++.+-....|+-..+++-+-|+-.+=|+.-|+--|.
T Consensus 3 ~p~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 3 IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp CCGGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CccccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 355566789999999999999999999999999999999987664
No 173
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.11 E-value=4.4e+02 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 024453 227 VISQYQDQARNLELRNYALKLH 248 (267)
Q Consensus 227 l~~qyqEqir~LE~~NYaL~~H 248 (267)
+-.+|+.+|.+| +|||++=
T Consensus 144 ak~qr~~rI~rL---~~AL~IA 162 (248)
T 4e29_A 144 AQEQKDLRIRQI---EEALRYA 162 (248)
T ss_dssp HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHH
Confidence 446677777666 7888773
No 174
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=20.91 E-value=70 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
.|..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 46799999999999999999999999977
No 175
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.65 E-value=4.1e+02 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024453 227 VISQYQDQARNLELRNYALKLHLQRA 252 (267)
Q Consensus 227 l~~qyqEqir~LE~~NYaL~~HL~qA 252 (267)
.+...|.+|.+|...|-.|..+++.-
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777643
No 176
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.44 E-value=1e+02 Score=23.87 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024453 207 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 240 (267)
Q Consensus 207 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 240 (267)
.|-|.+.++ .++..|++.+...+++|+.|..
T Consensus 5 ~~~~~~~l~---~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 5 HHHRMKQLE---DKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp ----CHHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 355666554 4444555666777777776653
No 177
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=20.38 E-value=79 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhc
Q 024453 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (267)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (267)
..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~ 56 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKN 56 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 479999999999999999999999976
No 178
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=20.25 E-value=3.4e+02 Score=21.77 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH--------HHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 024453 179 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ--------EQKEKEVELLKLVISQYQDQAR-NLELRN 242 (267)
Q Consensus 179 ~~~En~~LKe~l~~l~~eN~iLKRAv~IQheR~~e~--------e~~~~E~~~Lkql~~qyqEqir-~LE~~N 242 (267)
...++..|+.+...|...|.-|+ .|.+++ +....++..+..-+..|++++. .|...+
T Consensus 48 ~~~~~~eL~~~~~~Le~~n~~L~-------~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~~~~~l~~~~ 113 (155)
T 2oto_A 48 DFKRAEELEKAKQALEDQRKDLE-------TKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQAS 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 179
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.17 E-value=1.5e+02 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024453 214 QEQKEKEVELLKLVISQYQDQAR 236 (267)
Q Consensus 214 ~e~~~~E~~~Lkql~~qyqEqir 236 (267)
++++..|+++|+..+.+||.=++
T Consensus 34 L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888888887555
No 180
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=20.03 E-value=33 Score=32.20 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 024453 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (267)
Q Consensus 44 ~~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (267)
|+.|..| +++..++.+||.+|++|.+-|..-|
T Consensus 329 I~rL~~m--GF~~~~a~~al~a~~~n~e~A~~~L 360 (368)
T 1oqy_A 329 IERLKAL--GFPESLVIQAYFACEKNENLAANFL 360 (368)
T ss_dssp HHHHHHH--TCCSHHHHHHTSSSSSCSSHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Done!