BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024455
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 15/144 (10%)
Query: 119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
QKK + ++++++ G KA+A+DCEMVG G G + ARV +V++ ++ YV+P
Sbjct: 234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293
Query: 178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
PVT+YR V+G+ E++K + VK ++ E+L K R+LVGH L
Sbjct: 294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339
Query: 238 HDLDSLRMNYPDHMLRDTAKYRPL 261
+DL L +++P +RDT K++P
Sbjct: 340 NDLKVLFLDHPKKKIRDTQKFKPF 363
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
+A+A+DCEMVG G G + ARV +V++ ++ YV+P PVT+YR V+G+ E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
K L+ V+ ++ E+L K R+LVGH L +DL L +++P +RDT
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347
Query: 256 AKYRPL 261
KY+P
Sbjct: 348 QKYKPF 353
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
+ VAMDCEMVG G +G + ARV +V+ ++ YV+P VT+YR V+G+ ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
K P K V+ ++ EIL + R LVGH + +DL L +++P +RDT
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 338
Query: 256 AKYRPL 261
KY+P
Sbjct: 339 QKYKPF 344
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 14/128 (10%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +AMDCE VG G G AR+ +V+ +V+ +V+P+ V +R V+G+ E +
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHM 179
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
KNA+ KE + K +IL + R+LVGH L+HDL++L +++P +LRDT
Sbjct: 180 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDT 225
Query: 256 AKYRPLMK 263
+++ P K
Sbjct: 226 SRHLPFRK 233
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
+ VAMDCEMVG G +G + ARV +V+ ++ YV+P VT+YR V+G+ +DI
Sbjct: 227 RTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDI 286
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
KN K+V+ ++ EIL + R LVGH + +DL L +++P +RDT
Sbjct: 287 KNGEAFKDVQAEVAEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 332
Query: 256 AKYRPL 261
KY+P
Sbjct: 333 QKYKPF 338
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
+A+DCEMVG G NG + ARV +V+ VI T+VQP+ PVT+YR ++G+ + D+
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
A EV ++ +L++ ++L+GH +++DL L + +P + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238
Query: 258 YRPLMK 263
Y+PL +
Sbjct: 239 YKPLQE 244
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 14/126 (11%)
Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
+A+DCEMVG G NG + ARV +V+ VI T+VQP+ PVT+YR ++G+ + D+
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192
Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
A EV ++ +L++ ++L+GH +++DL L + +P + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238
Query: 258 YRPLMK 263
Y+PL +
Sbjct: 239 YKPLQE 244
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +AMDCE VG G GT ARV +V+ + +F +V+P+ VT++R V+G+T + +
Sbjct: 98 KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM 157
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
A+ +E +++ ++L + R+LVGH + HDLD+L +++P +RDT
Sbjct: 158 NEAISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDT 203
Query: 256 AKYRPL 261
++Y+P
Sbjct: 204 SQYKPF 209
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 14/128 (10%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +A+DCEMVG G G ARV +VD I+ +YV+P+ VTN+R V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
+ A +EV+ +I ++L + R+LVGH L+HDL++L +++P +RDT
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDT 237
Query: 256 AKYRPLMK 263
AK+ K
Sbjct: 238 AKFSGFKK 245
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +AMDCE VG G G ARV LV+ NV+ +V+P+ VT++R V+G+T + +
Sbjct: 94 KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
KNA+ K+ + ++ +IL K ++LVGH ++HDL++L +++P + DT
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDT 199
Query: 256 AKYRPL 261
A++ P
Sbjct: 200 ARHLPF 205
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 75/124 (60%), Gaps = 14/124 (11%)
Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
+A+DCEMVG G G+ + ARV +V+ I+ +V+PQ VT+YR V+G+ +D+K
Sbjct: 136 LAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKG 195
Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
A +V+ ++ ++ K ++LVGH +++DL +L +++P ++RDTA
Sbjct: 196 APSFSQVQGEVANLI--------------KGKVLVGHAIQNDLKALLLSHPKVLIRDTAT 241
Query: 258 YRPL 261
++PL
Sbjct: 242 FQPL 245
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 14/126 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VAMDCE VG G +G + ARV +V+ + YV+P+ VT++R V+G+T +
Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
K A+ L+E + ++ +L N R+L+GHGL HDL+ L +++P +RDT
Sbjct: 172 KQAVTLEEAQRRVAAMLKN--------------RVLIGHGLHHDLEMLMVSHPKAQIRDT 217
Query: 256 AKYRPL 261
+ + P
Sbjct: 218 SMHGPF 223
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 14/132 (10%)
Query: 130 RTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTG 189
RT K V+MDCE VG G +G ARV +V+ NV+ +V+P+ PVT++R V+G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171
Query: 190 LTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD 249
+ + NA+ ++ + ++ +L K R+LVGH + HDL +L +++P
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPR 217
Query: 250 HMLRDTAKYRPL 261
M+RDT+++ P
Sbjct: 218 RMIRDTSRHMPF 229
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 26/172 (15%)
Query: 104 SAPVPFEKTLSNAESQKKIS---------GAIDEKR--TCRGPKAVAMDCEMVGGGSNGT 152
SA P KT+S+ S IS ++E R T K VAMDCEMVG G N
Sbjct: 72 SAQEPMVKTISHKSSTATISEQSRTESKPTKVNEGRSPTAEIGKYVAMDCEMVGVGPNPD 131
Query: 153 LDLC-ARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI 211
D ARV +V+ + ++ +YV+P+ +T++R V+G++ + + A L++V+ + EI
Sbjct: 132 NDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAEARSLEQVQKDVAEI 191
Query: 212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK 263
L+ R+LVGH + +DLD+L + +P +RDT+K+ P K
Sbjct: 192 LD--------------GRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRK 229
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGP-KAV 138
G LC+ SPS + EA P ++ SN KK ++ + GP K V
Sbjct: 56 GPGLCL--LPSPSQMPAVTEASDSRRQRPKARSGSNGLCSKK---SVPREAPRPGPIKCV 110
Query: 139 AMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA 198
A+DCEMVG G G + AR +V +V++ Y++P++P+ +YR +G+T + + A
Sbjct: 111 AIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMHKA 170
Query: 199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
+P + + +IL++L K +++VGH L +D +L+ +P RDT
Sbjct: 171 IPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDT 213
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCE VG G +G AR+ +++ V+ TYV+PQ VT++R V+G+ +
Sbjct: 115 KYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHM 174
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
++A+ K + K +E++NN ++LVGH + +DLD L +++P M+RDT
Sbjct: 175 QDAIDFKTAQLKTMELINN--------------KILVGHAVNNDLDILFLSHPKSMIRDT 220
Query: 256 AKY 258
K+
Sbjct: 221 CKF 223
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 14/120 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCEMVG G G + AR +V NV++ Y++P++P+ +YR +G+T + +
Sbjct: 109 KCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHM 168
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
+ A+P + + +IL++L K +++VGH L +D +L+ +P RDT
Sbjct: 169 RKAVPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 15/123 (12%)
Query: 134 GP-KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 192
GP K VA+DCEMVG G G + AR +V +V++ Y++P++P+ +YR +G+T
Sbjct: 101 GPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITR 160
Query: 193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 252
+ + A+P + + +IL++L K +++VGH L +D +L+ +P +
Sbjct: 161 QHMHKAIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPGSQI 206
Query: 253 RDT 255
RDT
Sbjct: 207 RDT 209
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +++DCEMVG G +G + AR +VD + I+ +YV+P VT++R V+G+++ +
Sbjct: 215 KYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHM 274
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
+A + V+ + +L K R+LVGH ++HDL+ L +P +RDT
Sbjct: 275 ASARSFESVQATVAALL--------------KGRILVGHDVKHDLEVLGFEHPHRDIRDT 320
Query: 256 AKYRPLMK 263
AKY K
Sbjct: 321 AKYSGFRK 328
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 79/131 (60%), Gaps = 19/131 (14%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K +AMDCEMVG + + + ARV +V+ +V++ TYV+P+ VT++R V+G+ +
Sbjct: 92 KYIAMDCEMVGVADD--MSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHM 149
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
++A ++V+ ++ +IL+N R+LVGH + +DL L +++P M+RDT
Sbjct: 150 RDAPSFEKVQAEVAKILDN--------------RVLVGHAVHNDLKVLLLSHPRRMIRDT 195
Query: 256 AK---YRPLMK 263
++ YR L K
Sbjct: 196 SRFSGYRKLAK 206
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 18/148 (12%)
Query: 114 SNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTY 173
+ A S+ K SGA ++ R K VA+DCEMVG G G + AR +V+ + +V++ Y
Sbjct: 160 TQAHSENKCSGA--SQKLPR--KMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEY 215
Query: 174 VQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVG 233
+ P + +YR +G+ ++ + NA P K + +IL+IL TG +++VG
Sbjct: 216 ILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKIL-----TG---------KIVVG 261
Query: 234 HGLEHDLDSLRMNYPDHMLRDTAKYRPL 261
H + +D +L+ +P + RDT+ PL
Sbjct: 262 HAIHNDFKALQYFHPKSLTRDTSHIPPL 289
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 14/120 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCEMVG G G + AR +V +V++ Y++P++P+ +YR +G+T + +
Sbjct: 109 KCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHM 168
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
A+P + + +IL++L K +++VGH L +D +L+ +P RDT
Sbjct: 169 CKAIPFQVAQKEILKLL--------------KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 129 KRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT 188
+ C K +A+DCE VG G NG + ARV +V+ +V+ YV+P VT++R V+
Sbjct: 125 RWKCAPGKFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVS 184
Query: 189 GLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
G+T + N + E ++++ +LN R L+GH L +DL L +++P
Sbjct: 185 GVTPAMVANGISFSEAQERVKRLLN--------------GRTLIGHALINDLAVLGLDHP 230
Query: 249 DHMLRDTAK 257
+RDT K
Sbjct: 231 RADIRDTQK 239
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCEMVG G G + AR +V+ D +V++ Y+ P + +YR +G+ ++ +
Sbjct: 174 KMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHM 233
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
NA P K +++IL+IL +++VGH + +D +L+ +P + RDT
Sbjct: 234 VNATPFKIARNQILKIL--------------AGKIVVGHAIHNDFKALQYIHPKSLTRDT 279
Query: 256 AKYRPLM 262
+ + PL+
Sbjct: 280 S-HIPLL 285
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 15/127 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCEMVG G G + AR +V+ + +V++ YV P + NYR +G+ + +
Sbjct: 193 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHM 252
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
NA P K + +IL+IL+ ++++GH + +D +L+ +P + RDT
Sbjct: 253 VNATPFKTARSQILKILS--------------GKVVIGHAIHNDYKALQYFHPKSLTRDT 298
Query: 256 AKYRPLM 262
++ PL+
Sbjct: 299 SRI-PLL 304
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
K VA+DCEMVG G G + AR +V+ + +V++ Y++P + +YR +G+ + +
Sbjct: 194 KMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHM 253
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
NA P K + +IL+IL+ +++VGH + +D +L+ +P + RDT
Sbjct: 254 VNATPFKTARSQILKILS--------------GKVVVGHAIHNDYKALQYFHPKSLTRDT 299
Query: 256 AKYRPLM 262
++ PL+
Sbjct: 300 SQI-PLL 305
>sp|Q9JL16|ISG20_MOUSE Interferon-stimulated gene 20 kDa protein OS=Mus musculus GN=Isg20
PE=1 SV=1
Length = 300
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
P+ VAMDCEMVG G L AR +V+ V++ Y++P+ +T+YR +V+G+T +
Sbjct: 5 PEVVAMDCEMVGLGPQRVSGL-ARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQH 63
Query: 195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 254
+ A P E + +IL++L K +L+VGH L+HD ++L+ + + + D
Sbjct: 64 MVRATPFGEARLEILQLL--------------KGKLVVGHDLKHDFNALKEDMSKYTIYD 109
Query: 255 TAKYRPLM 262
T+ R L
Sbjct: 110 TSTDRLLW 117
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 20/123 (16%)
Query: 129 KRTCRGPKAVAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYE 186
K+ VA+DCEMV G+ G RV +VD D VI +V+P PV +YR +
Sbjct: 132 KKVMESTNMVAVDCEMVLCEDGTEG----LVRVGVVDRDLKVILDEFVKPNKPVVDYRTD 187
Query: 187 VTGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 245
+TG+T EDI+NA + + ++++ + L+ G +LVGH L DL+ L++
Sbjct: 188 ITGITAEDIENASLSVVDIQETLQPFLSTG-------------TILVGHSLNRDLEVLKI 234
Query: 246 NYP 248
++P
Sbjct: 235 DHP 237
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 15/128 (11%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
+ VAMDCEMVG G + L AR LV+ V++ +++P+ +T+YR V+G+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
A P + +IL++L K +L+VGH L+HD +L+ + + + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 256 AKYRPLMK 263
+ R L +
Sbjct: 111 STDRLLWR 118
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
+ VAMDCEMVG G L AR LV+ V++ ++QP+ +T+YR V+G+T + +
Sbjct: 6 EVVAMDCEMVGMGPRRESGL-ARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHM 64
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
A P + +IL++L K +L+VGH L+HD +L+ + + + DT
Sbjct: 65 VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMNRYTIYDT 110
Query: 256 A 256
+
Sbjct: 111 S 111
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 22/177 (12%)
Query: 84 CMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI----DEKRTCRGPKAVA 139
M F PS + E+ + P T+ E + SG + D PK +A
Sbjct: 220 AMASFSKPSDYLMSYESF-IEDEYPLHPTVMKGEEVTQPSGWVASAGDFHSPPINPKILA 278
Query: 140 MDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM 199
+DCEMV NG L++ ARV +VD VI+ +V+P+ PVT+Y + +G+TEE ++N
Sbjct: 279 IDCEMVRT-ENG-LEI-ARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRN-- 333
Query: 200 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTA 256
+ +L++ +S + +D+ +L+GH L DL+ L+ +P H++ DTA
Sbjct: 334 --------VTTVLSDVQSYLKKTVDNNT--VLLGHSLNSDLNCLKFTHP-HII-DTA 378
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 20/121 (16%)
Query: 130 RTCRGPKAVAMDCEMVG--GGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEV 187
+ + + +++DCEMV GS + RV VD D V+ +V+P PV +Y+ ++
Sbjct: 138 KVIKSTRMLSIDCEMVTCEDGSQALV----RVGAVDRDLKVVLDKFVKPDKPVIDYKTDI 193
Query: 188 TGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN 246
TG+T ED++ A + + +++ K+ L+ G +LVGHGL +DL LR++
Sbjct: 194 TGVTAEDLERATLSVADIQKKLRRFLSVG-------------TILVGHGLHNDLQVLRID 240
Query: 247 Y 247
+
Sbjct: 241 H 241
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 28/136 (20%)
Query: 123 SGAIDEKRTCRGPKA--------VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHT 172
S A D RT G K +A+DCEMV GS + RV VD D VI
Sbjct: 120 SNAEDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVV----RVAAVDRDLKVILDE 175
Query: 173 YVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLL 231
+V+P PV +YR +TGLT +D++ A + + ++++K+L ++ E T +L
Sbjct: 176 FVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFIS--EDT-----------IL 222
Query: 232 VGHGLEHDLDSLRMNY 247
VG L HDL L++++
Sbjct: 223 VGQSLNHDLKVLKVDH 238
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 20/125 (16%)
Query: 134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEE 193
G A+DCEM L R+ LV+ D VI+ V+P +P+ +Y +G+TEE
Sbjct: 222 GSHIFALDCEMCLSEQGLVL---TRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEE 278
Query: 194 DIKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
+ L+EV+ +L+I++ ++ +L+GH L++DL +++ +P +
Sbjct: 279 KLTVGAKKTLREVQKDLLKIIS-------------RSDILIGHSLQNDLKVMKLKHP--L 323
Query: 252 LRDTA 256
+ DTA
Sbjct: 324 VVDTA 328
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 21/117 (17%)
Query: 136 KAVAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEE 193
+ +A+DCEMV G+ G + RV VD + VI +V+P PV +YR +TG+T E
Sbjct: 74 QMLALDCEMVLCEDGTEGVV----RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAE 129
Query: 194 DIKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD 249
D++ A + L ++++K+ L+ G +L+ H + D SL YP+
Sbjct: 130 DVQKATLSLVDIQEKLRPFLSAGA-------------ILIDHPIVID-TSLVFKYPN 172
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 407 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 463
Query: 195 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 245
+ K ++ L +V+ +L + +L+GH LE DL +L++
Sbjct: 464 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKL 502
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 499 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 555
Query: 195 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 245
+ K ++ L +V+ +L + +L+GH LE DL +L++
Sbjct: 556 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKL 594
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
P A+DCEM + L+L RV +VD D V++ T+V+P + +Y +G+TE D
Sbjct: 405 PGIYALDCEMCY--TTHGLEL-TRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEAD 461
Query: 195 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 245
+ K ++ L +V+ +L + +L+GH LE DL +L++
Sbjct: 462 VAKTSITLPQVQAILLSFFS-------------AQTILIGHSLESDLLALKL 500
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 19/123 (15%)
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
P+ VA+DCEM L RV LVD V+ V P P+T+Y +G+T
Sbjct: 213 PEIVALDCEMCITKEGLEL---TRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVM 269
Query: 195 IKNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
++ LK+++++ L+++ K +LVGH LE+DL SL++++ +++
Sbjct: 270 MEGVTTTLKDIQEEFLKLV-------------FKETILVGHSLENDLLSLKISH--NLVI 314
Query: 254 DTA 256
DTA
Sbjct: 315 DTA 317
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 19/109 (17%)
Query: 139 AMDCEMVGGGSNGTLDL-CARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED-IK 196
A+DCEM S T L RV +VD D V++ T+V+P V +Y +G+TE D +
Sbjct: 1054 ALDCEM----SYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVD 1109
Query: 197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM 245
++ L++V+ +L + + +L+GH LE DL +L++
Sbjct: 1110 TSITLRDVQAVLLSMFSADT-------------ILIGHSLESDLLALKV 1145
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 24/139 (17%)
Query: 109 FEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV 168
F+K LS +S + R + A+DCEMV + L AR+ +VD N
Sbjct: 1455 FKKELSTF-----VSTPVPVPNDQRSTRVYALDCEMVYTIAGPAL---ARLTMVDMQRNR 1506
Query: 169 IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP--LKEVKDKILEILNNGESTGRLMLDDG 226
+ +V+P V + E +GLT E I N+ P LK K+ + +N
Sbjct: 1507 VLDVFVKPPTDVLDPNTEFSGLTMEQI-NSAPDTLKTCHQKLFKYVNADT---------- 1555
Query: 227 KARLLVGHGLEHDLDSLRM 245
+L+GH LE DL ++R+
Sbjct: 1556 ---ILIGHSLESDLKAMRV 1571
>sp|Q54U94|REXO4_DICDI RNA exonuclease 4 OS=Dictyostelium discoideum GN=rexo4 PE=3 SV=1
Length = 298
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 136 KAVAMDCEMVG-GGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
K ++DC+++ G+ GTL +VC+ +++ +I+ V+P + ++R + TGLT +
Sbjct: 124 KFFSIDCKIIEIEGNKGTL---GKVCIANQNGQIIYEKIVKPMDKIVDFRTKFTGLTRDK 180
Query: 195 I-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR 253
+ + +V+ ++ +IL + ++LVGH L HDL +L++ + +LR
Sbjct: 181 VQREGTDFLQVQKEVEKIL--------------RHKILVGHDLVHDLKNLKLAHKKKLLR 226
Query: 254 DTAKYRPLM 262
D ++
Sbjct: 227 DATQFTKFF 235
>sp|Q3U3I9|ZN865_MOUSE Zinc finger protein 865 OS=Mus musculus GN=Znf865 PE=2 SV=1
Length = 1058
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGI 75
C C+K FK+ HL +H I H+ +P C+VC K ESL+ H+ K H + +
Sbjct: 352 CSLCWKVFKKPSHLHQHQII--HTGEKPFSCSVCSKSFNRRESLKRHV-----KTHSADL 404
Query: 76 FSDRGCNLCMNIFDSPSSLIKHKEA 100
C +C +F S L+KH+ A
Sbjct: 405 LRLP-CGICGKVFRDASYLLKHQAA 428
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIF 76
C C K F R++ L H+K + + C +C K+ + L +H + ++
Sbjct: 380 CSVCSKSFNRRESLKRHVKTHSADLLRLPCGICGKVFRDASYLLKHQAAHAAAGTPRPVY 439
Query: 77 SDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAES 118
C+LC + +P SL++HK A + PV E A S
Sbjct: 440 P---CDLCGKTYSAPQSLLRHKAA--HAPPVATEPAKDGAAS 476
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 75/200 (37%), Gaps = 30/200 (15%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK-LSKSFESLREHLTGPLSKAHCSG 74
C C + F R++ L H +I H+ +P +C VC K +SF + H+ + +
Sbjct: 548 CGICGRAFGRRETLKRHERI--HTGEKPHQCPVCGKRFRESFHLSKHHVVHTRERPY--- 602
Query: 75 IFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRG 134
C LC +F P SL +H++ L P A Q +GA G
Sbjct: 603 -----KCELCGKVFGYPQSLTRHRQVHRLQLPCALAGATGLATGQ-GTTGAC-------G 649
Query: 135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFH--TYVQPQLPVTNYRYEVTGLTE 192
P A G S G DL E +FH ++ + + Y + G T
Sbjct: 650 PGAA--------GTSGGPADLSYACSDCGEHFPDLFHVMSHKEAHMSEKPYGCDACGKTF 701
Query: 193 EDIKNAMPLKEVKDKILEIL 212
I+N M K V E L
Sbjct: 702 GFIENLMWHKLVHQAAPERL 721
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH 62
R C C K FK+ HL++HM + HS +P +C +C + SL H
Sbjct: 219 RFPCGVCQKSFKQSSHLVQHMLV--HSGERPYECGICGRTYNHVSSLIRH 266
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 16 KCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
KC C K F + L EH ++ H+V +P +C C K + +L EH + H
Sbjct: 904 KCGVCAKHFAQSSSLAEHRRL--HAVARPQRCGACGKTFRYRSNLLEH-----QRLH--- 953
Query: 75 IFSDRG--CNLCMNIFDSPSSLIKHKEA 100
+R C C F SS+++H+ A
Sbjct: 954 -LGERAYRCEHCGKGFFYLSSVLRHQRA 980
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-----LTGPLS 68
H+C C K+F+ HL +H + H+ +P KC +C K+ +SL H L P +
Sbjct: 574 HQCPVCGKRFRESFHLSKHHVV--HTRERPYKCELCGKVFGYPQSLTRHRQVHRLQLPCA 631
Query: 69 KAHCSGIFSDRG 80
A +G+ + +G
Sbjct: 632 LAGATGLATGQG 643
>sp|Q0VGE8|ZN816_HUMAN Zinc finger protein 816 OS=Homo sapiens GN=ZNF816 PE=2 SV=2
Length = 651
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLS 68
+KC C K F R+ HL H +I H+ +P KC VC K +S L H TG P
Sbjct: 509 YKCEECDKVFSRRSHLERHRRI--HTGEKPYKCKVCDKAFRSDSCLANHTRVHTGEKPYK 566
Query: 69 KAHCSGIFSDRG----------------CNLCMNIFDSPSSLIKHKEACSLSAPV 107
C+ +F+ +G CN C +F+ +SL KH+ + P
Sbjct: 567 CNKCAKVFNQKGILAQHQRVHTGEKPYKCNECGKVFNQKASLAKHQRVHTAEKPY 621
>sp|Q9UPG8|PLAL2_HUMAN Zinc finger protein PLAGL2 OS=Homo sapiens GN=PLAGL2 PE=2 SV=1
Length = 496
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
H+C+ C K F RKDHL H++ + C+ C K + R HL A SG
Sbjct: 98 HQCMYCDKMFHRKDHLRNHLQTHDPNKEALHCSECGKNYNTKLGYRRHLA---MHAASSG 154
Query: 75 IFSDRGCNLCMNIFDSPSSLIKHKEACS 102
D C +C+ F+S +L++H +A S
Sbjct: 155 ---DLSCKVCLQTFESTQALLEHLKAHS 179
>sp|Q9ERR8|ZN319_MOUSE Zinc finger protein 319 OS=Mus musculus GN=Znf319 PE=2 SV=1
Length = 581
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCS 73
+KC C K F + HL+ H + HS +P KCAVC+K K L H+ + H
Sbjct: 229 YKCTLCDKSFSQSSHLVHHKRT--HSSERPYKCAVCEKTFKHRSHLVRHMYAHSGEHH-- 284
Query: 74 GIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF 109
+F CN+C F S L++H C+ S PF
Sbjct: 285 -LFR---CNVCELHFKESSELLQH--PCTPSGERPF 314
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
+KC C K FK + HL+ HM H +C VC+ K L +H P SG
Sbjct: 257 YKCAVCEKTFKHRSHLVRHMYAHSGEHHLFRCNVCELHFKESSELLQHPCTP------SG 310
Query: 75 IFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFE 110
R C C F PS L +H+ + SA PF+
Sbjct: 311 ERPFR-CGECQKAFKRPSDLRQHER--THSAERPFK 343
Score = 37.4 bits (85), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGI 75
KC C K F + L+ H + + KC VC K K +L++H +HC+
Sbjct: 399 KCPVCQKGFDQSAELLRHKCLPTSTERPFKCPVCNKAYKRASALQKHQL-----SHCAAA 453
Query: 76 FSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKR 130
C LC F S S ++H+ C + EK L + +K+ A D +R
Sbjct: 454 EKPLRCTLCERRFFSSSEFVQHR--CDPAR----EKPLKCPDCEKRFKYASDLQR 502
>sp|Q9P2F9|ZN319_HUMAN Zinc finger protein 319 OS=Homo sapiens GN=ZNF319 PE=1 SV=2
Length = 582
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCS 73
+KC C K F + HL+ H + HS +P KCAVC+K K L H+ + H
Sbjct: 230 YKCTLCDKSFSQSSHLVHHKRT--HSSERPYKCAVCEKTFKHRSHLVRHMYAHSGEHH-- 285
Query: 74 GIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF 109
+F CN+C F S L++H C+ S PF
Sbjct: 286 -LFR---CNVCELHFKESSELLQH--PCTPSGERPF 315
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
+KC C K FK + HL+ HM H +C VC+ K L +H P SG
Sbjct: 258 YKCAVCEKTFKHRSHLVRHMYAHSGEHHLFRCNVCELHFKESSELLQHPCTP------SG 311
Query: 75 IFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFE 110
R C C F PS L +H+ + SA PF+
Sbjct: 312 ERPFR-CGECQKAFKRPSDLRQHER--THSAERPFK 344
Score = 37.7 bits (86), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGI 75
KC C K F + L+ H + + KC VC K K +L++H AHC+
Sbjct: 400 KCPVCQKGFDQSAELLRHKCLPGAAERPFKCPVCNKAYKRASALQKHQL-----AHCAAA 454
Query: 76 FSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKR 130
C LC F S S ++H+ C + EK L + +K+ A D +R
Sbjct: 455 EKPLRCTLCERRFFSSSEFVQHR--CDPAR----EKPLKCPDCEKRFKYASDLQR 503
>sp|B1H2Q6|ZN865_XENTR Zinc finger protein 865 OS=Xenopus tropicalis GN=znf865 PE=2 SV=1
Length = 942
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 25/121 (20%)
Query: 3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLRE 61
+E +P C C+K FK++ HL +H I H+ +P C+VC K ESL+
Sbjct: 270 SEQSIPLPQDGPFTCTLCWKVFKKQSHLHQHQII--HTGEKPFSCSVCAKSFNRRESLKR 327
Query: 62 HL--------------------TGPLSK--AHCSGIFSDRGCNLCMNIFDSPSSLIKHKE 99
H+ T L K A +G D C LC + +P SL++HK+
Sbjct: 328 HVKTHSDSMKVQCEVCGKSFRDTSYLLKHQATHTGERPDYKCELCGKSYAAPQSLLRHKQ 387
Query: 100 A 100
Sbjct: 388 V 388
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC-QKLSKSFESLREHLTGPLSKAHCSG 74
C C + F R++ L H +I H+ +P +C+VC ++ +SF + H+ + +
Sbjct: 468 CNVCGRGFGRRETLKRHERI--HTGEKPHQCSVCGKRFRESFHLTKHHVVHTRERPY--- 522
Query: 75 IFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP 106
C LC +F P SL +HK+ L P
Sbjct: 523 -----KCELCGKVFGYPQSLTRHKQIHRLQLP 549
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-----LTGPLS 68
H+C C K+F+ HL +H + H+ +P KC +C K+ +SL H L P +
Sbjct: 494 HQCSVCGKRFRESFHLTKHHVV--HTRERPYKCELCGKVFGYPQSLTRHKQIHRLQLPCT 551
Query: 69 KAHCSGIF-SDR---GCNLCMNIFDSPSSLIKHKE 99
A +G DR GC C F L+ HKE
Sbjct: 552 VA--TGTLPPDRLTFGCTDCGERFPDSFHLMNHKE 584
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH 62
R C C K FK+ HL++HM + H+ +P +C C + SL H
Sbjct: 171 RFPCTVCQKSFKQSSHLVQHMLV--HTGERPYECNTCGRTYNHISSLIRH 218
>sp|Q58NQ5|PLAG1_CHICK Zinc finger protein PLAG1 OS=Gallus gallus GN=PLAG1 PE=2 SV=1
Length = 501
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSG 74
HKC C K F RKDHL H+ + KC C K + + HL A +
Sbjct: 92 HKCNYCEKMFHRKDHLKNHLHTHNPNKEAFKCEECGKNYNTKLGFKRHL------ALHAA 145
Query: 75 IFSDRGCNLCMNIFDSPSSLIKH 97
D C +C+ F+S L++H
Sbjct: 146 TSGDLTCKVCLQTFESTGVLLEH 168
>sp|Q6GL52|ZN574_XENTR Zinc finger protein 574 OS=Xenopus tropicalis GN=znf574 PE=2 SV=1
Length = 857
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFES----LREHLTGPLS 68
RHKC C K FK+ HL HM H+ +P C VC SKSF S LR LT
Sbjct: 456 RHKCPTCGKHFKKGSHLRTHMLT--HTGERPYSCTVC---SKSFNSQANLLRHRLTHTGE 510
Query: 69 KAHCSGIFSDRGCNLCMNIFDSPSSLIKHK 98
K + C LC F S+L +H+
Sbjct: 511 KPY--------KCQLCGKAFSQSSTLQQHQ 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,124,366
Number of Sequences: 539616
Number of extensions: 4298308
Number of successful extensions: 18365
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 900
Number of HSP's that attempted gapping in prelim test: 12901
Number of HSP's gapped (non-prelim): 4765
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)