BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024457
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 19/234 (8%)
Query: 40 SEWRPARATFYA---ASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFE 96
+W A++T+Y + P+D GGACGY D++K + T + +F+ G+ CG+CFE
Sbjct: 17 DKWLDAKSTWYGKPTGAGPKDN-GGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75
Query: 97 LRCFEDIRWCIPGTSIIVTVTNFC-APNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWK 155
++C + G ++V +T+ P ++ D GH F + ++ +
Sbjct: 76 IKCTKPE--ACSGEPVVVHITDDNEEPIAPYHFDLSGHA------FGAMAKKGDEQKLRS 127
Query: 156 AGNMPVQYRRYNFILILSIRFTI---DGSDI-FISALISNVAGAGDVVAVKIK-GSRTGW 210
AG + +Q+RR + T GS+ +++ L+ V G GDVVAV IK + W
Sbjct: 128 AGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKW 187
Query: 211 LPMGRNWGQNWHINANLK-NQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGK 263
+ + +WG W I+ K P + TT G + +V P+ W ++E K
Sbjct: 188 IELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 241
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 17 TPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYA----ASDPRDKVGGACGYGDLEKAG 72
P +T++YN +W ARAT+Y A P + GGACG ++
Sbjct: 5 VPPGXNITTNYN-----------GKWLTARATWYGQPNGAGAPDN--GGACGIKNVNLPP 51
Query: 73 YGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGG 132
Y TA + +F+ G+ CG+C+E+RC E G + V +T+ + P
Sbjct: 52 YSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE--CSGNPVTVYITDM-----NYEPIAPY 104
Query: 133 HCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRY--NFILILSIRFTIDG--SDIFISAL 188
H + K F + I G M V++RR + I F I+ + +++ L
Sbjct: 105 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVL 164
Query: 189 ISNVAGAGDVVAVKIKGSRTG-WLPMGRNWGQNWHIN-ANLKNQPLSFEVTTSDGLTVTS 246
+ VA GD+V ++I+ + W PM +WG W ++ A P S +T+ G V +
Sbjct: 165 VKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIA 224
Query: 247 YNVAPKNW 254
+V P NW
Sbjct: 225 KDVIPANW 232
>pdb|3R50|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R50|E Chain E, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R51|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|3R52|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|A Chain A, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|B Chain B, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|C Chain C, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
pdb|4DDN|D Chain D, Structure Analysis Of A Wound-Inducible Lectin Ipomoelin
From Sweet Potato
Length = 160
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 178 IDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSF 234
IDG I IS +I+N G + ++K ++ + P G N G ++I N+ + F
Sbjct: 86 IDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGF 142
>pdb|2KNR|A Chain A, Solution Structure Of Protein Atu0922 From A. Tumefaciens.
Northeast Structural Genomics Consortium Target Att13.
Ontario Center For Structural Proteomics Target Atc0905
Length = 121
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 181 SDIFISALISNVAGAGDVVAVKIKGS 206
S++F+SALI V AG AV+ KG+
Sbjct: 8 SEMFVSALIRRVFAAGGFAAVEKKGA 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,710,410
Number of Sequences: 62578
Number of extensions: 375199
Number of successful extensions: 742
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)