Query 024457
Match_columns 267
No_of_seqs 142 out of 948
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 1E-72 2.2E-77 506.1 28.1 253 1-265 1-256 (256)
2 PLN00050 expansin A; Provision 100.0 1.3E-70 2.9E-75 490.6 26.9 225 40-265 23-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 7.2E-64 1.6E-68 447.0 25.6 209 40-266 23-247 (247)
4 PLN03024 Putative EG45-like do 100.0 1.2E-28 2.5E-33 200.3 13.4 121 1-165 1-125 (125)
5 smart00837 DPBB_1 Rare lipopro 99.9 7.4E-28 1.6E-32 184.3 8.6 87 77-163 1-87 (87)
6 COG4305 Endoglucanase C-termin 99.9 1.7E-25 3.7E-30 188.2 21.1 194 40-266 28-231 (232)
7 PLN00115 pollen allergen group 99.9 1E-23 2.2E-28 169.4 10.9 91 167-265 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.5E-22 3.3E-27 153.4 9.5 78 174-251 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 9.6E-19 2.1E-23 130.9 7.2 74 77-163 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 4.3E-10 9.4E-15 89.1 4.3 60 87-168 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 5.2E-06 1.1E-10 67.1 9.4 66 76-167 44-113 (119)
12 COG0797 RlpA Lipoproteins [Cel 98.1 2.9E-05 6.3E-10 69.2 9.8 60 91-169 119-178 (233)
13 TIGR00413 rlpA rare lipoprotei 98.0 0.0001 2.2E-09 64.7 11.2 93 45-170 1-95 (208)
14 PRK10672 rare lipoprotein A; P 97.4 0.0021 4.5E-08 61.0 11.8 91 43-166 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.6 0.087 1.9E-06 46.2 3.9 54 77-146 70-123 (201)
16 cd02854 Glycogen_branching_enz 74.0 6.8 0.00015 30.4 4.7 48 198-245 16-76 (99)
17 PF03404 Mo-co_dimer: Mo-co ox 72.3 4.5 9.7E-05 33.1 3.4 50 194-243 38-106 (131)
18 cd02110 SO_family_Moco_dimer S 68.3 10 0.00022 35.6 5.2 50 194-243 234-293 (317)
19 PRK10564 maltose regulon perip 63.2 19 0.00042 33.7 5.9 79 160-267 47-129 (303)
20 PLN00177 sulfite oxidase; Prov 57.5 20 0.00043 34.8 5.2 57 187-243 284-362 (393)
21 PF07172 GRP: Glycine rich pro 54.7 9.7 0.00021 29.6 2.1 17 5-21 8-24 (95)
22 PF15240 Pro-rich: Proline-ric 47.9 11 0.00024 32.7 1.5 20 4-23 1-20 (179)
23 cd02114 bact_SorA_Moco sulfite 43.4 34 0.00073 32.9 4.3 50 194-243 286-345 (367)
24 cd02111 eukary_SO_Moco molybdo 43.1 59 0.0013 31.2 5.9 57 187-243 264-339 (365)
25 PF08770 SoxZ: Sulphur oxidati 43.0 39 0.00084 26.3 3.9 34 213-247 64-97 (100)
26 cd02113 bact_SoxC_Moco bacteri 42.3 50 0.0011 31.2 5.2 57 187-243 227-294 (326)
27 cd02855 Glycogen_branching_enz 38.2 1E+02 0.0022 23.1 5.5 33 212-244 50-85 (106)
28 TIGR02588 conserved hypothetic 36.4 1.6E+02 0.0035 24.0 6.5 58 180-238 48-118 (122)
29 PF10417 1-cysPrx_C: C-termina 34.4 23 0.00049 22.9 1.1 11 248-258 10-20 (40)
30 PLN02708 Probable pectinestera 32.9 50 0.0011 33.5 3.8 21 1-21 1-22 (553)
31 cd02112 eukary_NR_Moco molybdo 32.0 1.2E+02 0.0026 29.3 6.2 47 197-243 301-364 (386)
32 TIGR02934 nifT_nitrog probable 29.8 2.2E+02 0.0048 20.7 7.2 53 181-236 9-64 (67)
33 PF03100 CcmE: CcmE; InterPro 29.1 70 0.0015 25.9 3.4 30 230-259 71-101 (131)
34 PF04620 FlaA: Flagellar filam 29.0 1.2E+02 0.0026 27.1 5.1 40 173-214 109-151 (217)
35 PRK13159 cytochrome c-type bio 27.8 73 0.0016 27.0 3.4 28 231-258 73-101 (155)
36 cd02861 E_set_proteins_like E 26.2 1.3E+02 0.0028 21.9 4.2 45 199-244 14-60 (82)
37 PRK13254 cytochrome c-type bio 25.1 97 0.0021 25.9 3.7 29 231-259 72-101 (148)
38 PF06988 NifT: NifT/FixU prote 24.2 1.1E+02 0.0025 22.1 3.3 50 183-235 11-63 (64)
39 PLN02252 nitrate reductase [NA 23.2 1.9E+02 0.0041 31.2 6.2 48 196-243 372-436 (888)
40 PF02903 Alpha-amylase_N: Alph 22.6 90 0.002 24.5 2.9 50 197-247 33-97 (120)
41 PRK13150 cytochrome c-type bio 21.5 1.1E+02 0.0023 26.1 3.2 29 231-259 79-108 (159)
42 PRK10301 hypothetical protein; 20.6 1.3E+02 0.0028 24.2 3.4 27 153-179 95-124 (124)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1e-72 Score=506.11 Aligned_cols=253 Identities=49% Similarity=0.899 Sum_probs=229.6
Q ss_pred CchhHHHHHHHHHHhhCCCCccccccccccccCCCCCCCCCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEe
Q 024457 1 MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGL 80 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~ 80 (267)
||-.||-|+|.|-|| |-+.+ .......++|++++|||||++|+.++++|||||+++..++|+.++||+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAl 68 (256)
T PLN00193 1 MSKSLLGLAILLQFC-CYLFI-----------NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAAL 68 (256)
T ss_pred CchhhHHHHHHHHHH-HHHHh-----------hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeec
Confidence 777888777655442 22211 112245568999999999999998899999999998888999999999
Q ss_pred ChhhhcCCccCCceEEEEEe--CCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCe
Q 024457 81 SEILFERGQICGACFELRCF--EDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGN 158 (267)
Q Consensus 81 s~~~~~~g~~CG~C~eV~c~--~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~ 158 (267)
|+++|++|++||+||||+|. .++.+|.+|++|+|+|||.||+++++|+++++||++++.|||||.+||.+||....|+
T Consensus 69 s~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Gi 148 (256)
T PLN00193 69 STALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGI 148 (256)
T ss_pred CHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCe
Confidence 99999999999999999995 2577898888999999999999999999999999998999999999999999999999
Q ss_pred eeEEEEEEEEeecCceEEEEcCCCCcEEEEEEeeCCCcceEEEEEEecCCceeecCCCCCCeEEECCCCCCCCeEEEEEe
Q 024457 159 MPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT 238 (267)
Q Consensus 159 v~i~~~~V~C~~~gni~~~v~ss~~w~av~v~n~~g~~~I~sVeIk~~g~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs 238 (267)
|+|+||||+|+++|+|+|++++++||++|+|.|++|+++|++||||+++++|++|+|+||++|+++.++.++||+||||+
T Consensus 149 v~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts 228 (256)
T PLN00193 149 VPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTT 228 (256)
T ss_pred EeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999877899999999999999988888899999999
Q ss_pred cCCcEEEEccccCCCCCCCcEEecC-CC
Q 024457 239 SDGLTVTSYNVAPKNWNFGQTFEGK-QF 265 (267)
Q Consensus 239 ~~G~~v~~~~vip~~w~~G~~y~~~-qF 265 (267)
.+|+++++.||||++|++|++|++. ||
T Consensus 229 ~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 229 TDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred cCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999999999999999999999 98
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.3e-70 Score=490.65 Aligned_cols=225 Identities=57% Similarity=1.037 Sum_probs=214.8
Q ss_pred CCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecC
Q 024457 40 SEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNF 119 (267)
Q Consensus 40 ~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~ 119 (267)
.+|..++|||||++|+.|+++|||||+++..++|+.++||+|+.+|++|++||+||||+|.+++.+|.++ +|+|+|||+
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g-sV~V~itd~ 101 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG-SIIITATNF 101 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC-cEEEEEecC
Confidence 5799999999999999999999999999888899999999999999999999999999998666789777 899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCeeeEEEEEEEEeecCceEEEEcCCCCcEEEEEEeeCCCcceE
Q 024457 120 CAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTIDGSDIFISALISNVAGAGDVV 199 (267)
Q Consensus 120 Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~~gni~~~v~ss~~w~av~v~n~~g~~~I~ 199 (267)
||+++++|+++++||++++.|||||.+||.+||....|+|+|+||||+|+.+|+|+|++++++||++++|.|++|+++|+
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi~ 181 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIV 181 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccEE
Confidence 99999999899999999899999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEEEecCCceeecCCCCCCeEEECCCCCCCCeEEEEEecCCcEEEEccccCCCCCCCcEEecCCC
Q 024457 200 AVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSYNVAPKNWNFGQTFEGKQF 265 (267)
Q Consensus 200 sVeIk~~g~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs~~G~~v~~~~vip~~w~~G~~y~~~qF 265 (267)
+||||++++.|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|++|++.||
T Consensus 182 ~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 182 AVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 999999777899999999999999887888899999999999999999999999999999999988
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=7.2e-64 Score=446.97 Aligned_cols=209 Identities=28% Similarity=0.582 Sum_probs=189.2
Q ss_pred CCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecC
Q 024457 40 SEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNF 119 (267)
Q Consensus 40 ~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~ 119 (267)
++|++++|||||++|+.|+++|||||+++..+.+++++||++ ++|++|++||+||||+|. ++.+|.++ +|+|+|||.
T Consensus 23 ~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~-~~~~C~~~-~v~V~iTd~ 99 (247)
T PLN03023 23 QDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCK-APNLCSDD-GVNVVVTDY 99 (247)
T ss_pred CCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecC-CCCccCCC-CeEEEEEeC
Confidence 469999999999999999999999999988888899999999 999999999999999997 47899666 899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc-------ccCCeeeEEEEEEEEeecC-ceEEEEc--CC-CCcEEEE
Q 024457 120 CAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAI-------WKAGNMPVQYRRYNFILIL-SIRFTID--GS-DIFISAL 188 (267)
Q Consensus 120 Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~-------~~~G~v~i~~~~V~C~~~g-ni~~~v~--ss-~~w~av~ 188 (267)
||. + +.|||||.+||.+||. ...|+|+|+||||+|.++| +|+|+|+ ++ ++|++|+
T Consensus 100 ~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 100 GEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred CCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 984 2 4799999999999997 4679999999999999999 9999997 43 8899999
Q ss_pred EEeeCCCcceEEEEEEecC-CceeecCCCCCCeEEECCCCCCCCeEEEE--EecCCcE-EEEccccCCCCCCCcEEecC-
Q 024457 189 ISNVAGAGDVVAVKIKGSR-TGWLPMGRNWGQNWHINANLKNQPLSFEV--TTSDGLT-VTSYNVAPKNWNFGQTFEGK- 263 (267)
Q Consensus 189 v~n~~g~~~I~sVeIk~~g-~~W~~m~R~~g~~W~~~~~~~g~p~~~Rv--Ts~~G~~-v~~~~vip~~w~~G~~y~~~- 263 (267)
|.|++|+++|++||||+++ ..|++|+|+||++|+++.+|++ ||+||+ |+.+|++ |+++||||++|++|++|++.
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~v 244 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNI 244 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccc
Confidence 9999999999999999976 6899999999999999988887 655555 4557754 89999999999999999999
Q ss_pred CCC
Q 024457 264 QFE 266 (267)
Q Consensus 264 qF~ 266 (267)
||.
T Consensus 245 q~~ 247 (247)
T PLN03023 245 QLD 247 (247)
T ss_pred ccC
Confidence 995
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=1.2e-28 Score=200.27 Aligned_cols=121 Identities=30% Similarity=0.590 Sum_probs=96.6
Q ss_pred CchhHHHHHHHHHHhhCCCCccccccccccccCCCCCCCCCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEe
Q 024457 1 MSPQLLTLVIQLLLLFTPAPTTVTSHYNYNFTSTSPPSQSEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGL 80 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~ 80 (267)
||-.||.+ ++++++|.++... .+|+||||++.+ .||| |++ .+++.++||+
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~--------------------~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAl 50 (125)
T PLN03024 1 MSKRILIF-STVLVFLFSVSYA--------------------TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAA 50 (125)
T ss_pred CceeeHHH-HHHHHHHhhhhcc--------------------cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEe
Confidence 56666544 4455555555442 479999999753 6899 544 3567899999
Q ss_pred ChhhhcCCccCCceEEEEEeCC----CccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccC
Q 024457 81 SEILFERGQICGACFELRCFED----IRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKA 156 (267)
Q Consensus 81 s~~~~~~g~~CG~C~eV~c~~~----~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~ 156 (267)
|+.+|++|+.||+||||+|.+. +.+| ++++|+|+|+|+||+. |. .|||||++||.+||+...
T Consensus 51 s~~lf~~G~~CG~c~~V~C~~~~~~~~~~c-~gksV~V~VtD~CP~~----------C~---~~~DLS~~AF~~iA~~~a 116 (125)
T PLN03024 51 SDSLWNNGRVCGKMFTVKCKGPRNAVPHPC-TGKSVTVKIVDHCPSG----------CA---STLDLSREAFAQIANPVA 116 (125)
T ss_pred CHHHcCCCcccCceEEEEECCCCccccccc-cCCeEEEEEEcCCCCC----------CC---CceEcCHHHHHHhcCccC
Confidence 9999999999999999999631 2478 5679999999999952 75 599999999999999999
Q ss_pred CeeeEEEEE
Q 024457 157 GNMPVQYRR 165 (267)
Q Consensus 157 G~v~i~~~~ 165 (267)
|+|+|+|.+
T Consensus 117 G~v~V~y~~ 125 (125)
T PLN03024 117 GIINIDYIP 125 (125)
T ss_pred CEEEEEEeC
Confidence 999999974
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.95 E-value=7.4e-28 Score=184.32 Aligned_cols=87 Identities=59% Similarity=1.144 Sum_probs=81.5
Q ss_pred EEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccC
Q 024457 77 TAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKA 156 (267)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~ 156 (267)
+||+|+.+|++|++||+||||+|.+++.+|.++++|+|+|||+||+++..++++++||.+++.|||||++||.+||.+..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 48999999999999999999999766888987779999999999999888888899999888999999999999999999
Q ss_pred CeeeEEE
Q 024457 157 GNMPVQY 163 (267)
Q Consensus 157 G~v~i~~ 163 (267)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 6
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=188.20 Aligned_cols=194 Identities=20% Similarity=0.274 Sum_probs=157.5
Q ss_pred CCceeeEEEEeCCCCCCCCCcCccCCCCCCCCCCCCeEEEeChhhhcCC----ccCCceEEEEEeCCCccccCCCeEEEE
Q 024457 40 SEWRPARATFYAASDPRDKVGGACGYGDLEKAGYGQATAGLSEILFERG----QICGACFELRCFEDIRWCIPGTSIIVT 115 (267)
Q Consensus 40 ~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~eV~c~~~~~~C~~g~sV~V~ 115 (267)
++-..|.|||-|.+. ++||--... -+..+.+.|+++..-|-| +.-|+..+|... +| +.+|.
T Consensus 28 d~~f~G~ATyTgsGY----sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP-------KG-~TTVY 92 (232)
T COG4305 28 DDLFEGYATYTGSGY----SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP-------KG-KTTVY 92 (232)
T ss_pred ccccceeEEEecccc----cCceEEecC---cCCcceeeecCHHHcccCCchhhhccceEEEECC-------CC-ceEEE
Confidence 344689999977653 578876543 234578999999888755 579999999863 56 77999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCeeeEEEEEEEEeecCceEEEEc--CCCCcEEEEEEeeC
Q 024457 116 VTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFILILSIRFTID--GSDIFISALISNVA 193 (267)
Q Consensus 116 VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~~gni~~~v~--ss~~w~av~v~n~~ 193 (267)
|||+-|++ ..+.+|||+.||.+|+++.+|+++|+||.|+-+..||+.+++| |+.||.++||+||.
T Consensus 93 VTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~ 159 (232)
T COG4305 93 VTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK 159 (232)
T ss_pred Eecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc
Confidence 99999983 2368999999999999999999999999999999999999998 78999999999998
Q ss_pred CCcceEEEEEEecCCceeecCCCCCCeEEECCCCCCCCeEEEEEecCCcEEEEc-cccCCCCCCCcEEe--cC-CCC
Q 024457 194 GAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSY-NVAPKNWNFGQTFE--GK-QFE 266 (267)
Q Consensus 194 g~~~I~sVeIk~~g~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs~~G~~v~~~-~vip~~w~~G~~y~--~~-qF~ 266 (267)
- +|.++|+.++ +.|..|.+.+||+|.-.+ +..+|+.+|+||+.|++++.. -.+|+.-.. +.|. +. ||+
T Consensus 160 y--PV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asS-KaY~V~G~VQFs 231 (232)
T COG4305 160 Y--PVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASS-KAYTVPGHVQFS 231 (232)
T ss_pred C--ceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccC-CceeecceeecC
Confidence 5 9999999975 689999999999998765 444599999999999998865 345544332 3343 33 786
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=1e-23 Score=169.43 Aligned_cols=91 Identities=19% Similarity=0.379 Sum_probs=81.3
Q ss_pred EEeecCceEEEEc--CCCCcEEEEEEeeCCCcceEEEEEEecC-Ccee-ecCCCCCCeEEECC--CCCCCCeEEEEEecC
Q 024457 167 NFILILSIRFTID--GSDIFISALISNVAGAGDVVAVKIKGSR-TGWL-PMGRNWGQNWHINA--NLKNQPLSFEVTTSD 240 (267)
Q Consensus 167 ~C~~~gni~~~v~--ss~~w~av~v~n~~g~~~I~sVeIk~~g-~~W~-~m~R~~g~~W~~~~--~~~g~p~~~RvTs~~ 240 (267)
.|.. +|+|+|+ +|++||++.+ | ++|.+||||++| ..|+ +|+|+||++|+++. +++| ||+||+|+.+
T Consensus 21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 5644 8999997 6799997766 3 379999999987 5899 99999999999865 6777 9999999999
Q ss_pred CcEEEEccccCCCCCCCcEEecC-CC
Q 024457 241 GLTVTSYNVAPKNWNFGQTFEGK-QF 265 (267)
Q Consensus 241 G~~v~~~~vip~~w~~G~~y~~~-qF 265 (267)
|++++++||||++|++|++|++. ||
T Consensus 93 G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCEEEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999999 97
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.88 E-value=1.5e-22 Score=153.39 Aligned_cols=78 Identities=45% Similarity=0.890 Sum_probs=64.2
Q ss_pred eEEEEc--CCCCcEEEEEEeeCCCcceEEEEEEecC-CceeecCCCCCCeEEECCCCCCCCeEEEEEecC-CcEEEEccc
Q 024457 174 IRFTID--GSDIFISALISNVAGAGDVVAVKIKGSR-TGWLPMGRNWGQNWHINANLKNQPLSFEVTTSD-GLTVTSYNV 249 (267)
Q Consensus 174 i~~~v~--ss~~w~av~v~n~~g~~~I~sVeIk~~g-~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs~~-G~~v~~~~v 249 (267)
|+|+|+ |++||++|+|.|++|.++|++||||+++ ..|++|+|+||++|++++.+.++||+||||+.+ |++++++||
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~nV 80 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVADNV 80 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEecc
Confidence 689997 6799999999999999999999999988 479999999999999984444459999999977 999999999
Q ss_pred cC
Q 024457 250 AP 251 (267)
Q Consensus 250 ip 251 (267)
||
T Consensus 81 iP 82 (82)
T PF01357_consen 81 IP 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 98
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=9.6e-19 Score=130.91 Aligned_cols=74 Identities=35% Similarity=0.709 Sum_probs=60.6
Q ss_pred EEEeChhhhcCCccCCceEEEEEeC-CCcc--ccCC-CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhh
Q 024457 77 TAGLSEILFERGQICGACFELRCFE-DIRW--CIPG-TSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIA 152 (267)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~eV~c~~-~~~~--C~~g-~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la 152 (267)
+||++..+|++|.+||+||+++|.. .... |..+ ++|+|+|+|+||+ |.. +|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~~--~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CPP--NHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SSS--SEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------CcC--CEEEeCHHHHHHhC
Confidence 5899999999999999999999942 1222 7543 7999999999997 764 79999999999999
Q ss_pred cccCCeeeEEE
Q 024457 153 IWKAGNMPVQY 163 (267)
Q Consensus 153 ~~~~G~v~i~~ 163 (267)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.98 E-value=4.3e-10 Score=89.13 Aligned_cols=60 Identities=20% Similarity=0.472 Sum_probs=44.4
Q ss_pred CCccCCceEEEEEeCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc----ccCCeeeEE
Q 024457 87 RGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAI----WKAGNMPVQ 162 (267)
Q Consensus 87 ~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~----~~~G~v~i~ 162 (267)
....||+|++|+... +|++++|+|+|+|+. .+|||++.+|++|-. ...|.+.|.
T Consensus 56 gq~~CGkClrVTNt~------tga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~ 113 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA------TGAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVD 113 (119)
T ss_dssp SGGGTT-EEEEE-TT------T--EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEE
T ss_pred CcccccceEEEEecC------CCcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEE
Confidence 447899999999763 689999999999984 479999999999963 467899999
Q ss_pred EEEEEE
Q 024457 163 YRRYNF 168 (267)
Q Consensus 163 ~~~V~C 168 (267)
|++|+|
T Consensus 114 y~fV~C 119 (119)
T PF00967_consen 114 YEFVDC 119 (119)
T ss_dssp EEEE--
T ss_pred EEEEcC
Confidence 999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.30 E-value=5.2e-06 Score=67.06 Aligned_cols=66 Identities=20% Similarity=0.436 Sum_probs=48.1
Q ss_pred eEEEeCh-hhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc-
Q 024457 76 ATAGLSE-ILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAI- 153 (267)
Q Consensus 76 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~- 153 (267)
+|.+... .-| |...||.|+|++- +|++|.|..+|.-+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty--------~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g 97 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTY--------NGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNG 97 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEE--------TTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS
T ss_pred eeccccccccC-CCCCCCCeEEEEE--------CCeEEEEEEEecCC-----------------CcccchHHHHHHhcCC
Confidence 5666655 346 4578999999996 58899999999844 359999999999976
Q ss_pred --ccCCeeeEEEEEEE
Q 024457 154 --WKAGNMPVQYRRYN 167 (267)
Q Consensus 154 --~~~G~v~i~~~~V~ 167 (267)
...|+|+++|++|+
T Consensus 98 ~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 98 QAVELGRVDATYTQVD 113 (119)
T ss_dssp -CCCC-EEE-EEEEE-
T ss_pred cccceeEEEEEEEEcC
Confidence 46789999999996
No 12
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=2.9e-05 Score=69.19 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCeeeEEEEEEEEe
Q 024457 91 CGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFI 169 (267)
Q Consensus 91 CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~ 169 (267)
=|.-.+|+..+ +|++|+|+|.|++| +..+ -.+|||..|+++|+-...|+.+|+.+.+.+.
T Consensus 119 ~~t~v~VtNl~------NgrsvvVRINDRGP------------f~~g-RiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLD------NGRSVVVRINDRGP------------FVSG-RIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEcc------CCcEEEEEEeCCCC------------CCCC-cEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 45677888874 79999999999999 4434 4899999999999999999999999999876
No 13
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.96 E-value=0.0001 Score=64.69 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=69.3
Q ss_pred eEEEEeCCCCCCCCCcCccCCCCCCCCCCC--CeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecCCCC
Q 024457 45 ARATFYAASDPRDKVGGACGYGDLEKAGYG--QATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAP 122 (267)
Q Consensus 45 g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~--~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~ 122 (267)
|.|+|||..-.+ ...|.|- .|. .++||=. -...|...+|+... +|++|+|+|.|++|-
T Consensus 1 G~ASwYg~~f~G--~~TAnGe------~y~~~~~tAAHk------tLPlgT~V~VtNl~------ngrsviVrVnDRGPf 60 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGE------VYNMKALTAAHK------TLPFNTYVKVTNLH------NNRSVIVRINDRGPF 60 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCe------ecCCCccccccc------cCCCCCEEEEEECC------CCCEEEEEEeCCCCC
Confidence 689999964210 2344442 222 2455543 24789999999874 789999999999995
Q ss_pred CCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCeeeEEEEEEEEee
Q 024457 123 NYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYNFIL 170 (267)
Q Consensus 123 ~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~ 170 (267)
. +..-+|||..|+.+|+-...|..+|+.+.+....
T Consensus 61 ~-------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 61 S-------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAK 95 (208)
T ss_pred C-------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCC
Confidence 2 1247999999999999999999999999998765
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.40 E-value=0.0021 Score=60.96 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=63.1
Q ss_pred eeeEEEEeCCCCCCCCCcCccCCCCCCCCCCC--CeEEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecCC
Q 024457 43 RPARATFYAASDPRDKVGGACGYGDLEKAGYG--QATAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFC 120 (267)
Q Consensus 43 ~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~--~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~C 120 (267)
..|.|+|||....+ ...|.| ..|+ .++||-.+ ..-|...+|+... +|++|+|+|.|++
T Consensus 79 ~~G~ASwYg~~f~G--~~TA~G------e~~~~~~~tAAH~t------LPlps~vrVtNl~------ngrsvvVrVnDRG 138 (361)
T PRK10672 79 QAGLAAIYDAEAGS--NLTASG------ERFDPNALTAAHPT------LPIPSYVRVTNLA------NGRMIVVRINDRG 138 (361)
T ss_pred eEEEEEEeCCccCC--CcCcCc------eeecCCcCeeeccC------CCCCCEEEEEECC------CCcEEEEEEeCCC
Confidence 36889999865210 112222 2222 24555432 4678889999875 7999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCCeeeEEEEEE
Q 024457 121 APNYGFNPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRY 166 (267)
Q Consensus 121 p~~~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V 166 (267)
|-. +..-+|||..|+++|+-...+.|.|+.-.|
T Consensus 139 P~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 139 PYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred CCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 952 124799999999999987777777776666
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.57 E-value=0.087 Score=46.24 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=32.0
Q ss_pred EEEeChhhhcCCccCCceEEEEEeCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHH
Q 024457 77 TAGLSEILFERGQICGACFELRCFEDIRWCIPGTSIIVTVTNFCAPNYGFNPDGGGHCNPPNKHFVLPIE 146 (267)
Q Consensus 77 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~g~sV~V~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 146 (267)
+||++-.-......|++|||++-.+++ .+||+.+|++|+.=-. + ..+||||...
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~---l~GKkmiVQ~tNtG~d---l----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP---LKGKKMIVQVTNTGGD---L----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST---TTT-EEEEEEEEE-TT---T----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC---cCCCEeEEEecccCCC---C----------CCCeEEEEeC
Confidence 566652211223689999999988644 3789999999986221 1 2479999763
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=74.04 E-value=6.8 Score=30.35 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=34.5
Q ss_pred eEEEEEEecCCcee----ecCCCCCCeEEECCC---------CCCCCeEEEEEecCCcEEE
Q 024457 198 VVAVKIKGSRTGWL----PMGRNWGQNWHINAN---------LKNQPLSFEVTTSDGLTVT 245 (267)
Q Consensus 198 I~sVeIk~~g~~W~----~m~R~~g~~W~~~~~---------~~g~p~~~RvTs~~G~~v~ 245 (267)
-++|+|.++-..|. +|+|.....|++.-+ +.+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45677775546775 488877779987532 2567999999998888764
No 17
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=72.34 E-value=4.5 Score=33.10 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCc-ceEEEEEEecC-CceeecCCCC--C-----------CeEEECC--CC-CC-CCeEEEEEecCCcE
Q 024457 194 GAG-DVVAVKIKGSR-TGWLPMGRNW--G-----------QNWHINA--NL-KN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 194 g~~-~I~sVeIk~~g-~~W~~m~R~~--g-----------~~W~~~~--~~-~g-~p~~~RvTs~~G~~ 243 (267)
|.+ +|.+|||..++ .+|++.+... . -.|+++- +. .+ --|.+|-||.+|.+
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 334 89999999987 5799755321 1 1466642 12 23 26677778888854
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=68.27 E-value=10 Score=35.59 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCcceEEEEEEecCC-ceeecCCCCC-------CeEEECCCC-CC-CCeEEEEEecCCcE
Q 024457 194 GAGDVVAVKIKGSRT-GWLPMGRNWG-------QNWHINANL-KN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 194 g~~~I~sVeIk~~g~-~W~~m~R~~g-------~~W~~~~~~-~g-~p~~~RvTs~~G~~ 243 (267)
+...|++|||+.+++ +|++..-... -.|+++-.+ .+ --+.+|.+|..|++
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 335799999999985 9998654321 156665322 22 26777778888864
No 19
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.15 E-value=19 Score=33.71 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEEEEEEEeecCceEEEEc-CCCCcEEEEEEeeCCCcceEEEEEEecCCceeecCCCCCCeEEECCCCCCCCeEEEEEe
Q 024457 160 PVQYRRYNFILILSIRFTID-GSDIFISALISNVAGAGDVVAVKIKGSRTGWLPMGRNWGQNWHINANLKNQPLSFEVTT 238 (267)
Q Consensus 160 ~i~~~~V~C~~~gni~~~v~-ss~~w~av~v~n~~g~~~I~sVeIk~~g~~W~~m~R~~g~~W~~~~~~~g~p~~~RvTs 238 (267)
.+.|+.|. .+..+.|.+. +++.+ .+ .++.+.|.+. +++.. . ++++|+|+|
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~---~f--~~~~s~vAAf--------------------~lPan-~-G~l~i~LsS 97 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL---NV--AGISGPVAAY--------------------SLPAN-I-GELTLTLSS 97 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce---ec--CCCcccEEEE--------------------Ecccc-c-ccEEEEEEE
Confidence 35666664 4457888886 66655 12 1233344444 33321 2 388999998
Q ss_pred -cCCcEEEEcc--ccCCCCCCCcEEecCCCCC
Q 024457 239 -SDGLTVTSYN--VAPKNWNFGQTFEGKQFES 267 (267)
Q Consensus 239 -~~G~~v~~~~--vip~~w~~G~~y~~~qF~~ 267 (267)
...+.|.+.+ ++-++|++-+.|...+|.|
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s~~F~y 129 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPSSYFTY 129 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEecccceEE
Confidence 4344777776 4458888888888887765
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=57.47 E-value=20 Score=34.82 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=33.4
Q ss_pred EEEEeeC---CCcceEEEEEEecC-CceeecCCC---------------CC--CeEEECCCCCC-CCeEEEEEecCCcE
Q 024457 187 ALISNVA---GAGDVVAVKIKGSR-TGWLPMGRN---------------WG--QNWHINANLKN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 187 v~v~n~~---g~~~I~sVeIk~~g-~~W~~m~R~---------------~g--~~W~~~~~~~g-~p~~~RvTs~~G~~ 243 (267)
+.|+.++ |..+|++|||..+| .+|+..+.. .+ ..|.+.-...+ --+.+|-||..|++
T Consensus 284 ~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~~ 362 (393)
T PLN00177 284 VTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANV 362 (393)
T ss_pred EEEEEEEECCCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCCC
Confidence 4455543 22369999999988 489976431 11 13444322333 25666778888864
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.71 E-value=9.7 Score=29.58 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhCCCCc
Q 024457 5 LLTLVIQLLLLFTPAPT 21 (267)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (267)
||.|++++|||+.|..+
T Consensus 8 lL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34444555566665555
No 22
>PF15240 Pro-rich: Proline-rich
Probab=47.86 E-value=11 Score=32.71 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhhCCCCccc
Q 024457 4 QLLTLVIQLLLLFTPAPTTV 23 (267)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (267)
|||.|+.++||.|.||=.+-
T Consensus 1 MLlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTD 20 (179)
T ss_pred ChhHHHHHHHHHhhhccccc
Confidence 78888888888888877753
No 23
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=43.40 E-value=34 Score=32.88 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=31.4
Q ss_pred CCcceEEEEEEecC-CceeecCC--CCCC----eEEECC-CC-CC-CCeEEEEEecCCcE
Q 024457 194 GAGDVVAVKIKGSR-TGWLPMGR--NWGQ----NWHINA-NL-KN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 194 g~~~I~sVeIk~~g-~~W~~m~R--~~g~----~W~~~~-~~-~g-~p~~~RvTs~~G~~ 243 (267)
|...|++|||..++ .+|++.+- ..+. .|++.= +. .+ --+.+|.||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 33579999999988 48997542 2222 366642 22 23 25666778888864
No 24
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=43.06 E-value=59 Score=31.16 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=34.2
Q ss_pred EEEEeeC---CCcceEEEEEEecC-CceeecCCCC--C----------CeEEECCCC-CC--CCeEEEEEecCCcE
Q 024457 187 ALISNVA---GAGDVVAVKIKGSR-TGWLPMGRNW--G----------QNWHINANL-KN--QPLSFEVTTSDGLT 243 (267)
Q Consensus 187 v~v~n~~---g~~~I~sVeIk~~g-~~W~~m~R~~--g----------~~W~~~~~~-~g--~p~~~RvTs~~G~~ 243 (267)
+.|+.++ |...|++|||..++ .+|+...... + -.|.+.-.+ .+ --+.+|.||..|++
T Consensus 264 ~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 264 ITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 4444442 33479999999988 4899865321 1 135554222 22 25667778888865
No 25
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=42.97 E-value=39 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=16.8
Q ss_pred cCCCCCCeEEECCCCCCCCeEEEEEecCCcEEEEc
Q 024457 213 MGRNWGQNWHINANLKNQPLSFEVTTSDGLTVTSY 247 (267)
Q Consensus 213 m~R~~g~~W~~~~~~~g~p~~~RvTs~~G~~v~~~ 247 (267)
+..+-+-.|.+...-.+ ++.|+.+|++|+.....
T Consensus 64 iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 64 ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 44443333444433333 77777777777765543
No 26
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=42.28 E-value=50 Score=31.20 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=33.4
Q ss_pred EEEEee--CCCcceEEEEEEecCC-ceeecCCC--CC----CeEEECCCC-CC-CCeEEEEEecCCcE
Q 024457 187 ALISNV--AGAGDVVAVKIKGSRT-GWLPMGRN--WG----QNWHINANL-KN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 187 v~v~n~--~g~~~I~sVeIk~~g~-~W~~m~R~--~g----~~W~~~~~~-~g-~p~~~RvTs~~G~~ 243 (267)
+.|+.+ .|.++|.+|||+.+++ +|+..+.. .+ -.|.+.=.+ .+ --+..|.||..|++
T Consensus 227 ~~i~G~A~sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 227 HEISGLAWSGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred EEEEEEEECCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 444444 3445799999999884 89986542 11 124333112 22 25667778888754
No 27
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=38.18 E-value=1e+02 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=19.8
Q ss_pred ecCCCC-CCeEEEC--CCCCCCCeEEEEEecCCcEE
Q 024457 212 PMGRNW-GQNWHIN--ANLKNQPLSFEVTTSDGLTV 244 (267)
Q Consensus 212 ~m~R~~-g~~W~~~--~~~~g~p~~~RvTs~~G~~v 244 (267)
+|+|.. ...|.+. ....+..+.+|++..+|.+.
T Consensus 50 ~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 50 PMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred ecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 677654 5677753 22233468899887555544
No 28
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=36.43 E-value=1.6e+02 Score=24.00 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=35.7
Q ss_pred CCCCcEEEEEEeeCCCcceEEEEEEec----C-------CceeecCCCCC--CeEEECCCCCCCCeEEEEEe
Q 024457 180 GSDIFISALISNVAGAGDVVAVKIKGS----R-------TGWLPMGRNWG--QNWHINANLKNQPLSFEVTT 238 (267)
Q Consensus 180 ss~~w~av~v~n~~g~~~I~sVeIk~~----g-------~~W~~m~R~~g--~~W~~~~~~~g~p~~~RvTs 238 (267)
.-+||..|.|.|.++ ...++|+|.+. + .+.--+.+..- ..+-....|.+..|.||+.+
T Consensus 48 ~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L~irv~g 118 (122)
T TIGR02588 48 TGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQLRLRVAG 118 (122)
T ss_pred CCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeEEEEEEe
Confidence 356999999999887 58999999862 1 11222332221 23444444554577777765
No 29
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.44 E-value=23 Score=22.95 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.3
Q ss_pred cccCCCCCCCc
Q 024457 248 NVAPKNWNFGQ 258 (267)
Q Consensus 248 ~vip~~w~~G~ 258 (267)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 37899999985
No 30
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=32.89 E-value=50 Score=33.53 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHH-hhCCCCc
Q 024457 1 MSPQLLTLVIQLLL-LFTPAPT 21 (267)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~ 21 (267)
|++..|+|.|.||| .+++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (553)
T PLN02708 1 MASLLLLLLLSLLLFHSPSSSS 22 (553)
T ss_pred CcchHHHHHHHHHHHhcccccc
Confidence 77777777777776 4455554
No 31
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=31.97 E-value=1.2e+02 Score=29.31 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=29.2
Q ss_pred ceEEEEEEecC-CceeecCCC--C--------C--CeEEECCCC---CC-CCeEEEEEecCCcE
Q 024457 197 DVVAVKIKGSR-TGWLPMGRN--W--------G--QNWHINANL---KN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 197 ~I~sVeIk~~g-~~W~~m~R~--~--------g--~~W~~~~~~---~g-~p~~~RvTs~~G~~ 243 (267)
+|++|||..+| .+|+..... . + -.|++.-.+ .+ --+.+|-||..|++
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~ 364 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNT 364 (386)
T ss_pred cEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCc
Confidence 69999999988 489986432 1 1 135554211 23 25666667877754
No 32
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=29.79 E-value=2.2e+02 Score=20.73 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCCcEEEEEEeeCCCcceEEEEEEecC-CceeecCCCCCCeEEECC--CCCCCCeEEEE
Q 024457 181 SDIFISALISNVAGAGDVVAVKIKGSR-TGWLPMGRNWGQNWHINA--NLKNQPLSFEV 236 (267)
Q Consensus 181 s~~w~av~v~n~~g~~~I~sVeIk~~g-~~W~~m~R~~g~~W~~~~--~~~g~p~~~Rv 236 (267)
...-+.+.|.--.-..+|.++| +... +.|..|.+.| .|.++. ....-|++||.
T Consensus 9 ~~g~l~~YvpKKDLEE~Vv~~e-~~~~WGG~v~L~NGw--~l~lp~l~~~~~LPiTveA 64 (67)
T TIGR02934 9 RAGELSAYVPKKDLEEVIVSVE-KEELWGGWVTLANGW--RLELPEIPDDTRLPITVEA 64 (67)
T ss_pred CCCCEEEEEECCcchhheeeee-cCccccCEEEECCcc--EEEeCCCCCCCCCCEEEEE
Confidence 3344566666555556888888 3333 5788887654 555554 22334777775
No 33
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=29.13 E-value=70 Score=25.94 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=17.4
Q ss_pred CCeEEEEEecCCc-EEEEccccCCCCCCCcE
Q 024457 230 QPLSFEVTTSDGL-TVTSYNVAPKNWNFGQT 259 (267)
Q Consensus 230 ~p~~~RvTs~~G~-~v~~~~vip~~w~~G~~ 259 (267)
..++|.|||...+ .|+...+.|.+|+.|..
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 4788888987554 45556899999988763
No 34
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=28.99 E-value=1.2e+02 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=30.1
Q ss_pred ceEEEEc--CCCCcEEEEEEeeCCCcceEEEEEEecC-CceeecC
Q 024457 173 SIRFTID--GSDIFISALISNVAGAGDVVAVKIKGSR-TGWLPMG 214 (267)
Q Consensus 173 ni~~~v~--ss~~w~av~v~n~~g~~~I~sVeIk~~g-~~W~~m~ 214 (267)
.|.+.|- +++|+|.+++++..| .+..+.+-.-+ ..|+.|+
T Consensus 109 ~I~vWV~G~n~~h~L~v~lrD~~G--~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 109 SISVWVYGDNYPHWLEVLLRDAKG--EVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEECCCCCceEEEEEEcCCC--CEEEEEeeeecCCceeEEE
Confidence 5566664 689999999999886 67777764434 6899885
No 35
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.77 E-value=73 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.1
Q ss_pred CeEEEEEecCCc-EEEEccccCCCCCCCc
Q 024457 231 PLSFEVTTSDGL-TVTSYNVAPKNWNFGQ 258 (267)
Q Consensus 231 p~~~RvTs~~G~-~v~~~~vip~~w~~G~ 258 (267)
.++|+|||...+ .|..+.++|.-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 578888886554 4555679999998875
No 36
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.24 E-value=1.3e+02 Score=21.88 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=27.6
Q ss_pred EEEEEEecCCce--eecCCCCCCeEEECCCCCCCCeEEEEEecCCcEE
Q 024457 199 VAVKIKGSRTGW--LPMGRNWGQNWHINANLKNQPLSFEVTTSDGLTV 244 (267)
Q Consensus 199 ~sVeIk~~g~~W--~~m~R~~g~~W~~~~~~~g~p~~~RvTs~~G~~v 244 (267)
++|+|.++=..| .+|+|.....|++.-++..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 778888654567 458887656787754343224556654 356654
No 37
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.07 E-value=97 Score=25.95 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=20.9
Q ss_pred CeEEEEEecCCc-EEEEccccCCCCCCCcE
Q 024457 231 PLSFEVTTSDGL-TVTSYNVAPKNWNFGQT 259 (267)
Q Consensus 231 p~~~RvTs~~G~-~v~~~~vip~~w~~G~~ 259 (267)
.++|+|||.... .|+.+.++|..|+.|..
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCCE
Confidence 678888887443 44456799999988753
No 38
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=24.20 E-value=1.1e+02 Score=22.06 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=21.7
Q ss_pred CcEEEEEEeeCCCcceEEEEEEecC-CceeecCCCCCCeEEECC--CCCCCCeEEE
Q 024457 183 IFISALISNVAGAGDVVAVKIKGSR-TGWLPMGRNWGQNWHINA--NLKNQPLSFE 235 (267)
Q Consensus 183 ~w~av~v~n~~g~~~I~sVeIk~~g-~~W~~m~R~~g~~W~~~~--~~~g~p~~~R 235 (267)
+-+.+.|---.-..+|.++| +... +.|..|.+.| .|.++. ....-|++||
T Consensus 11 G~ls~YVpKKDLEE~Vv~~E-~~~~wGG~v~L~NGw--~l~lp~~~~~~~lPiTve 63 (64)
T PF06988_consen 11 GGLSAYVPKKDLEEPVVSME-KPELWGGEVTLANGW--ELYLPPLPADTRLPITVE 63 (64)
T ss_dssp --EEEEETTTTEEEEEEEES-SSSS-SSEEEETTS---EEE----SSS-SS-EEE-
T ss_pred cCEEEEEeCCccccceeeee-ccCccCCEEEECCcC--EEEeCCCCCCCCCCeEee
Confidence 34555554333334566665 2222 5788887654 666654 1223377665
No 39
>PLN02252 nitrate reductase [NADPH]
Probab=23.16 E-value=1.9e+02 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=30.2
Q ss_pred cceEEEEEEecC-CceeecCCCC-------CC-----eEEECC---CCCC-CCeEEEEEecCCcE
Q 024457 196 GDVVAVKIKGSR-TGWLPMGRNW-------GQ-----NWHINA---NLKN-QPLSFEVTTSDGLT 243 (267)
Q Consensus 196 ~~I~sVeIk~~g-~~W~~m~R~~-------g~-----~W~~~~---~~~g-~p~~~RvTs~~G~~ 243 (267)
..|++|||..++ .+|+..+... |. .|.++- .+.+ .-+.+|-+|..|.+
T Consensus 372 ~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~ 436 (888)
T PLN02252 372 RKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNT 436 (888)
T ss_pred CceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCc
Confidence 379999999988 4899866532 11 344442 1223 26677777877753
No 40
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=22.58 E-value=90 Score=24.47 Aligned_cols=50 Identities=18% Similarity=0.036 Sum_probs=28.2
Q ss_pred ceEEEEEEecC-Cce--------eecCCCC----CCeEEECCCCCC--CCeEEEEEecCCcEEEEc
Q 024457 197 DVVAVKIKGSR-TGW--------LPMGRNW----GQNWHINANLKN--QPLSFEVTTSDGLTVTSY 247 (267)
Q Consensus 197 ~I~sVeIk~~g-~~W--------~~m~R~~----g~~W~~~~~~~g--~p~~~RvTs~~G~~v~~~ 247 (267)
+|++|.|.-.+ ..| ++|++.. .-+|+..-.+.. -...|+|++ +|+++...
T Consensus 33 Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~-~~~~~~y~ 97 (120)
T PF02903_consen 33 DVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED-GGETYYYG 97 (120)
T ss_dssp T-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe-CCEEEEEe
Confidence 66677765322 333 4565422 247887532222 367889999 78777765
No 41
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.55 E-value=1.1e+02 Score=26.13 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=21.4
Q ss_pred CeEEEEEecCCc-EEEEccccCCCCCCCcE
Q 024457 231 PLSFEVTTSDGL-TVTSYNVAPKNWNFGQT 259 (267)
Q Consensus 231 p~~~RvTs~~G~-~v~~~~vip~~w~~G~~ 259 (267)
.+.|+|||...+ .|+...++|..|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 578888887665 44556799999988763
No 42
>PRK10301 hypothetical protein; Provisional
Probab=20.58 E-value=1.3e+02 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=21.9
Q ss_pred cccCCeeeEEEEEEEEee---cCceEEEEc
Q 024457 153 IWKAGNMPVQYRRYNFIL---ILSIRFTID 179 (267)
Q Consensus 153 ~~~~G~v~i~~~~V~C~~---~gni~~~v~ 179 (267)
.+..|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999763 668888875
Done!