Query 024458
Match_columns 267
No_of_seqs 234 out of 1188
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00108 mraY phospho-N-acetyl 100.0 3.9E-30 8.6E-35 242.1 22.8 179 74-265 9-202 (344)
2 TIGR02380 ECA_wecA undecapreny 100.0 8.6E-30 1.9E-34 240.0 21.0 169 80-264 4-172 (346)
3 PRK15119 undecaprenyl-phosphat 100.0 1.1E-29 2.4E-34 240.7 21.1 169 80-264 10-178 (365)
4 COG0472 Rfe UDP-N-acetylmuramy 100.0 1E-29 2.2E-34 237.2 19.1 174 79-265 8-184 (319)
5 PRK14655 mraY phospho-N-acetyl 100.0 1.8E-28 3.9E-33 227.1 20.5 168 81-263 2-183 (304)
6 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 2.3E-28 4.9E-33 224.7 18.7 167 92-265 2-173 (283)
7 PRK14654 mraY phospho-N-acetyl 100.0 2.8E-28 6E-33 225.9 19.0 156 81-257 3-168 (302)
8 TIGR00445 mraY phospho-N-acety 100.0 4.9E-28 1.1E-32 226.1 16.6 164 88-264 2-178 (321)
9 cd06851 GT_GPT_like This famil 100.0 3.6E-27 7.8E-32 210.0 18.6 150 105-264 2-152 (223)
10 cd06854 GT_WbpL_WbcO_like The 99.9 1E-26 2.2E-31 210.5 17.3 144 104-265 2-145 (253)
11 cd06912 GT_MraY_like This subf 99.9 2.5E-26 5.3E-31 200.5 17.0 139 112-264 3-144 (193)
12 cd06856 GT_GPT_archaea UDP-Glc 99.9 1.5E-25 3.3E-30 205.7 17.9 144 105-265 2-145 (280)
13 cd06853 GT_WecA_like This subf 99.9 2.7E-25 5.8E-30 200.6 16.1 142 113-264 1-142 (249)
14 cd06499 GT_MraY-like Glycosylt 99.9 1.5E-24 3.2E-29 188.2 15.3 133 119-265 1-137 (185)
15 cd06852 GT_MraY Phospho-N-acet 99.9 2.5E-23 5.3E-28 191.1 15.1 144 113-264 4-155 (280)
16 KOG2788 Glycosyltransferase [C 99.9 1E-24 2.2E-29 200.7 -0.2 192 71-266 4-216 (418)
17 PF00953 Glycos_transf_4: Glyc 99.8 1.5E-18 3.3E-23 146.9 11.8 102 157-264 4-106 (159)
18 PF10555 MraY_sig1: Phospho-N- 93.1 0.012 2.7E-07 29.5 -1.2 11 118-128 2-12 (13)
19 PF06781 UPF0233: Uncharacteri 61.8 34 0.00074 26.3 6.1 31 36-66 27-57 (87)
20 PRK04125 murein hydrolase regu 47.4 1.4E+02 0.003 25.0 8.1 34 68-101 86-119 (141)
21 PF02673 BacA: Bacitracin resi 44.6 1.4E+02 0.0031 27.3 8.4 61 42-103 180-245 (259)
22 PF11391 DUF2798: Protein of u 43.8 1.1E+02 0.0024 21.4 6.7 47 54-100 11-58 (60)
23 PRK15050 2-aminoethylphosphona 42.6 1.8E+02 0.004 26.3 8.9 45 47-91 35-93 (296)
24 PRK02251 putative septation in 40.8 1.1E+02 0.0025 23.5 6.0 27 37-63 29-55 (87)
25 PF05478 Prominin: Prominin; 38.6 2.9E+02 0.0062 29.4 10.7 36 101-138 437-472 (806)
26 PRK11492 hyfE hydrogenase 4 me 32.3 1.9E+02 0.0041 25.8 7.0 23 80-102 61-83 (216)
27 PRK01821 hypothetical protein; 29.9 3.2E+02 0.0069 22.6 9.1 35 67-101 87-121 (133)
28 PRK00159 putative septation in 28.5 2.3E+02 0.0049 21.9 5.9 27 37-63 28-54 (87)
29 COG5373 Predicted membrane pro 26.9 8.4E+02 0.018 26.5 13.0 60 63-131 153-212 (931)
30 PF02529 PetG: Cytochrome B6-F 24.6 1.1E+02 0.0024 19.9 2.9 24 244-267 6-29 (37)
31 PF11683 DUF3278: Protein of u 24.2 3.8E+02 0.0083 21.6 8.3 20 93-112 81-100 (129)
32 PF05631 DUF791: Protein of un 22.6 2.9E+02 0.0063 26.7 6.8 46 51-102 52-97 (354)
33 CHL00008 petG cytochrome b6/f 22.2 1.3E+02 0.0028 19.5 2.9 24 244-267 6-29 (37)
34 COG3224 Uncharacterized protei 21.7 4E+02 0.0086 23.5 6.8 68 35-107 114-185 (195)
35 PRK00665 petG cytochrome b6-f 21.4 1.4E+02 0.003 19.3 2.9 24 244-267 6-29 (37)
36 COG0555 CysU ABC-type sulfate 20.9 5.7E+02 0.012 23.8 8.1 55 47-101 23-87 (274)
37 PRK12554 undecaprenyl pyrophos 20.5 6.7E+02 0.014 23.2 8.6 62 42-103 186-251 (276)
38 PRK10755 sensor protein BasS/P 20.5 5.9E+02 0.013 23.1 8.4 10 233-242 255-264 (356)
39 PRK00281 undecaprenyl pyrophos 20.4 6E+02 0.013 23.3 8.2 60 43-103 185-248 (268)
No 1
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.97 E-value=3.9e-30 Score=242.14 Aligned_cols=179 Identities=26% Similarity=0.402 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCC--CccCCCcchHHHHHHHHHHHHHHHHhhcccchhhH
Q 024458 74 LINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWL 151 (267)
Q Consensus 74 ~~~~~~~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H--~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l 151 (267)
...+..++++|++|++++|.++++++|+| +|+|.++++|+.| +++|||+||++++.+++++..++... .+.
T Consensus 9 ~~~~~~~~~af~is~~~~p~~i~~~~~~~-~~~~~~~~~p~~h~h~~~tP~~GGi~i~~~~~~~~~~~~~~--~~~---- 81 (344)
T PRK00108 9 FRALLALLTALLISLILGPRFIRFLRKLK-FGQPIREDGPQSHLKKAGTPTMGGILILLAIVISTLLWADL--SNP---- 81 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccccccccCCCCCCCcccHHHHHHHHHHHHHHHhc--cch----
Confidence 45577788999999999999999999999 5888787777765 78999999999999888766543211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--------CCCChhhHHHHHHHHHHHHHHHH--hC--CceeeeCCCccccccccccch
Q 024458 152 VEYNAALASICFMLLLGFVDDV--------LDVPWRVKLILPSFAALPLLMAY--AG--HTSIIIPKPLVPYVGLEILDL 219 (267)
Q Consensus 152 ~~~~~~l~~~~~~~liG~~DD~--------~~ls~~~KLl~q~laal~l~~~~--~g--~~~i~ip~~~~p~~g~~~l~l 219 (267)
+....+.+.+.++++|++||+ +++|++.|+++|++++.++.... .| .+.+.+| +.+...+++
T Consensus 82 -~~~~~l~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~~~~~~p-----~~~~~~i~l 155 (344)
T PRK00108 82 -YVWLVLLVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTSTSLTIP-----FFKDLSLDL 155 (344)
T ss_pred -HHHHHHHHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceEEec-----Ccccccccc
Confidence 223345566678899999999 57999999999999998765421 12 2334444 444223566
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 024458 220 G-WIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLVI 265 (267)
Q Consensus 220 g-~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~~ 265 (267)
+ |++++++++|+++++||+|++||+|||++|++++++.++++.++.
T Consensus 156 g~~~~~~~t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~ 202 (344)
T PRK00108 156 GVILYIPFAYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYL 202 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 7 789999999999999999999999999999999999998887643
No 2
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=99.97 E-value=8.6e-30 Score=239.97 Aligned_cols=169 Identities=15% Similarity=0.220 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 024458 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (267)
Q Consensus 80 ~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~ 159 (267)
.+.+|++|+.++|.++++++|+|++|+| | +||+|+++|||+||++++.+++++...+... .+ +....+.
T Consensus 4 ~~~~~~~s~~~~~~~~~~a~r~~lvD~P-~--~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~~---~~-----~~~~~l~ 72 (346)
T TIGR02380 4 LIVIFLSSFAFLFLMRKVAKIVGLVDKP-N--ARKRHQGFIPLVGGISIFLTLCIYLFLHPAL---IP-----HYSLYLF 72 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCC-C--CCCCCCCCcCCcCcHHHHHHHHHHHHHHhcc---hh-----HHHHHHH
Confidence 4567888999999999999999999998 4 5799999999999999999887665543211 11 1122345
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 024458 160 SICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSIN 239 (267)
Q Consensus 160 ~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvN 239 (267)
+...++++|++||++++|++.|++.|++++.+++. ..+.. +.....+ ++...++++|++++++++|+++.+||+|
T Consensus 73 ~~~li~~iG~~DD~~~Ls~~~rl~~q~~aa~~~~~-~~~~~---i~~~~~~-~~~~~l~l~~~~~~~t~~~iv~~~Na~N 147 (346)
T TIGR02380 73 CATILVVIGIIDDRFDISVKIRLAIQAAVSIVMIQ-FGNIY---LHSLGNI-FGPKELTLGLFGYIITIFAVIGAINAFN 147 (346)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-Hcccc---hhhcccc-cccccccchHHHHHHHHHHHHHHHHHHH
Confidence 66677899999999999999999999999987653 22221 1100011 2323467789999999999999999999
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 240 IHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 240 l~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
|+||+||||+|++++++.++++...
T Consensus 148 ~iDGiDGLa~g~~~i~~~~l~~~~~ 172 (346)
T TIGR02380 148 MIDGIDGLLGGLSCVSFAALGYLFW 172 (346)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876643
No 3
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=99.97 E-value=1.1e-29 Score=240.67 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 024458 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (267)
Q Consensus 80 ~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~ 159 (267)
.+.+|++|+.++|.++++++|.|++|+| | +||.|+++|||+||++++.+++++..++... .+ +....+.
T Consensus 10 ~~~~~~~s~~l~~~~~~~a~r~gl~D~P-~--~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~~---~~-----~~~~~l~ 78 (365)
T PRK15119 10 LISIFLFSTLFLFFARKVAKKIGLVDKP-N--YRKRHQGLIPLVGGISVYAGICFTFGITDYY---IP-----HASLYLA 78 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC-C--CCcCCCCCCCCcCcHHHHHHHHHHHHHHHhc---ch-----hHHHHHH
Confidence 3467888899999999999999999988 4 5799999999999999999987766543211 11 1122345
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 024458 160 SICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSIN 239 (267)
Q Consensus 160 ~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvN 239 (267)
+...+.++|++||++++|++.|++.|+++|..++. ..|.....+. .+ ++..+++++|++++++++|+++++||+|
T Consensus 79 ~~~ll~~iG~~DD~~~l~~~~RL~~Q~~aa~~l~~-~~g~~i~~~~---~~-~~~~~i~~~~~~~~~tv~~iv~~iNA~N 153 (365)
T PRK15119 79 CAGVLVFVGALDDRFDISVKIRATIQAAVGIVMMV-FAGLYLSSLG---YI-FGPWEMVLGPFGYFLTLFAVWAAINAFN 153 (365)
T ss_pred HHHHHHHHHhHhcccCCCHHHHHHHHHHHHHHHHH-HhCcchhccc---cc-cccccccchHHHHHHHHHHHHHHHhHHH
Confidence 55567889999999999999999999999977653 2342111111 11 2222355678999999999999999999
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 240 IHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 240 l~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
|+||+||||+|++++++.++++...
T Consensus 154 ~iDGiDGLa~g~~~i~~~~l~~~~~ 178 (365)
T PRK15119 154 MVDGIDGLLGGLSCVSFAAMGIILW 178 (365)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877654
No 4
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1e-29 Score=237.17 Aligned_cols=174 Identities=21% Similarity=0.346 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 024458 79 LSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (267)
Q Consensus 79 ~~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l 158 (267)
..+++|++|+.++|.++++++|.+..| +++++||.|+++||||||++++.+++++..++... ..+.+ ....+
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~--~~~~~~k~H~~~tP~mGGl~I~~~~~~~~~l~~~~-~~~~~-----~~~~l 79 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD--IPEDGPKSHKKGTPTMGGLAILLSILLASLLAANL-LTNPY-----VWLVL 79 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc--CCCccccccCCCCCCcchHHHHHHHHHHHHHHHHh-ccchH-----HHHHH
Confidence 778899999999999999999999776 45678999999999999999999999888766532 12222 23457
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHhC--CceeeeCCCccccccccccchh-HHHHHHHHHHHHHHH
Q 024458 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAG--HTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (267)
Q Consensus 159 ~~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l~~~~~g--~~~i~ip~~~~p~~g~~~l~lg-~l~~~l~v~~ivg~~ 235 (267)
.+...++++|++||+.|++++.|++.|...+.++++.... ......| ...|+. .+.+ +++++++++|+++++
T Consensus 80 ~~~~~~~~iG~lDD~~~l~~~~r~l~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ivg~s 154 (319)
T COG0472 80 LGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGELPIKFLDIP-LGIPFF----KLPGPLLFILFAVFAIVGAS 154 (319)
T ss_pred HHHHHHHHHHHHHhHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhccCc-ccccHH----HHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999853222211 1111222 111222 2334 899999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 024458 236 NSINIHAGLNGLEVGQTVVIASAVSINLVI 265 (267)
Q Consensus 236 NAvNl~DGlDGLa~G~siI~~~~l~i~~~~ 265 (267)
||+|++||+||||+|++++++.++++.++.
T Consensus 155 NAvNl~DGlDGLa~g~~~i~~~~~~~i~~~ 184 (319)
T COG0472 155 NAVNLTDGLDGLAAGLSAIALLALALIALL 184 (319)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 5
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.96 E-value=1.8e-28 Score=227.10 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCC--CCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 024458 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (267)
Q Consensus 81 l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~--~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l 158 (267)
+.+|++|++++|.++++++|+++ +|++|+++++ .||++||||||++++.+++++.+++..+...+.. +....+
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~-~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~----~~~~~l 76 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGW-GQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGE----RELLIM 76 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccch----HHHHHH
Confidence 46788999999999999999995 7888887754 5677899999999999988877653222101111 112345
Q ss_pred HHHHHHHHHHHHhccCC------------CChhhHHHHHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHH
Q 024458 159 ASICFMLLLGFVDDVLD------------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLY 226 (267)
Q Consensus 159 ~~~~~~~liG~~DD~~~------------ls~~~KLl~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l 226 (267)
.+...++++|++||+.| ++++.|+.+|+++|..+........ +....|+ ..+|+++++
T Consensus 77 ~~~~~~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~~~----~~~~~~~------~~~~~~~~~ 146 (304)
T PRK14655 77 LAALAMGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAPLA----SHELLPS------LGPVFDVLL 146 (304)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhccc----ccccccc------hhhHHHHHH
Confidence 66778999999999975 4567899999999977643211100 0001111 136889999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 024458 227 MFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINL 263 (267)
Q Consensus 227 ~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~ 263 (267)
+++++++++||+|+|||+||||+|++++++.+++..+
T Consensus 147 ~~~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~~~ 183 (304)
T PRK14655 147 IALVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLAVS 183 (304)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876543
No 6
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=99.96 E-value=2.3e-28 Score=224.69 Aligned_cols=167 Identities=54% Similarity=0.920 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHHHHHHHHHHH
Q 024458 92 PVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTA--DSNWLVEYNAALASICFMLLLGF 169 (267)
Q Consensus 92 p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~--~~~~l~~~~~~l~~~~~~~liG~ 169 (267)
|.++++++|+|+.|+|.|| .|+++|||+||++++++++++..++..+.... +.....++...+.+...++++|+
T Consensus 2 p~~i~~~~~~~l~~~d~~k----~~~~~vP~~GGlai~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~ 77 (283)
T cd06855 2 PKFGPLFIKAGLYGIDLNK----NGEEKIPESAGLVPGIVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLGF 77 (283)
T ss_pred hhHHHHHHHCCCcccCCCC----CCCCCCCCcCcHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988664 56789999999999999988765543221000 00111234446777788999999
Q ss_pred HhccCCCChhhHHHHHHHHHHHHHHHHhCC---ceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhH
Q 024458 170 VDDVLDVPWRVKLILPSFAALPLLMAYAGH---TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNG 246 (267)
Q Consensus 170 ~DD~~~ls~~~KLl~q~laal~l~~~~~g~---~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDG 246 (267)
+||+.+++++.|+++|++++.++++.+.+. +...+|. .++.+ ..++++|++++++++|+++++||+|++||+||
T Consensus 78 lDD~~~l~~~~Kl~~q~~aa~~~~~~~~~~~~~~~~~~p~--~~~~~-~~i~l~~l~~~lt~~~iv~~~Na~N~~DGlDG 154 (283)
T cd06855 78 ADDVLDLRWRHKLILPTFASLPLLMVYYGNTGITLPIVPL--RPLLG-TLIDLGILYYVYMILLAVFCTNSINIYAGING 154 (283)
T ss_pred hhchhccCchHHHHHHHHHHHHHHHHHhcccccceeecch--hhccc-ccccccHHHHHHHHHHHHHHhhhhhhhcccch
Confidence 999999999999999999998765433331 1222220 01122 23577899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024458 247 LEVGQTVVIASAVSINLVI 265 (267)
Q Consensus 247 La~G~siI~~~~l~i~~~~ 265 (267)
||+|++++++.++++.++.
T Consensus 155 La~g~~~i~~~~l~~~~~~ 173 (283)
T cd06855 155 LEVGQSLVIALSILLYNLL 173 (283)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887644
No 7
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.96 E-value=2.8e-28 Score=225.89 Aligned_cols=156 Identities=24% Similarity=0.416 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCC--CccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 024458 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (267)
Q Consensus 81 l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H--~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l 158 (267)
.++|++|.+++|.++++++|+|+ +|++||++|+.| |++||+|||++++.+.++.... . . .. ...+
T Consensus 3 ~~sf~~s~~~~p~~i~~~~k~~~-~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~-~-----~-~~-----~~~l 69 (302)
T PRK14654 3 AANFLLNLFLYPILIKLFRRRRI-GQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMI-S-----K-TN-----TMVL 69 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCcccccccccccCCCCCcCCcHHHHHHHHHHHHH-H-----H-HH-----HHHH
Confidence 35789999999999999999995 677799899999 7889999999998754433211 1 0 01 1235
Q ss_pred HHHHHHHHHHHHhccCC--------CChhhHHHHHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHH
Q 024458 159 ASICFMLLLGFVDDVLD--------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLL 230 (267)
Q Consensus 159 ~~~~~~~liG~~DD~~~--------ls~~~KLl~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ 230 (267)
.+...++++|++||+.| ++++.|+++|++++.++++ +.. ....+| +++. .++++++++++++++
T Consensus 70 ~~~~~~~~iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~-~~~-~~~~~~-----~~~~-~~~lg~~~~~~~~~~ 141 (302)
T PRK14654 70 LGMFLFFLIGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLL-LIR-PETNVD-----FFGF-TIEMGKWYYLFALLV 141 (302)
T ss_pred HHHHHHHHHHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHH-HHh-hccccc-----cccc-cccccHHHHHHHHHH
Confidence 56778999999999995 6899999999999988643 221 122233 4452 356788899999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHH
Q 024458 231 AVFCTNSINIHAGLNGLEVGQTVVIAS 257 (267)
Q Consensus 231 ivg~~NAvNl~DGlDGLa~G~siI~~~ 257 (267)
+++++||+|++||+||||+|++++...
T Consensus 142 iv~~~NavNl~DGlDGLa~g~~~~~~~ 168 (302)
T PRK14654 142 IVGSSNAMNLTDGLDGLAGWIYVSGSI 168 (302)
T ss_pred HHHHHHHhHHhhccchHHHHHHHHHHH
Confidence 999999999999999999998776543
No 8
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=99.96 E-value=4.9e-28 Score=226.07 Aligned_cols=164 Identities=23% Similarity=0.288 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCccCCcCCCCCCCCC--CccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 024458 88 QKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFML 165 (267)
Q Consensus 88 ~~l~p~~i~~~~r~~l~~~~i~k~gr~~H--~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~ 165 (267)
.+++|.++++++|+|+.|++ ++++|+.| +++|||+||++++.+++++..++... .++ +....+.+.+.++
T Consensus 2 ~~~~p~~i~~~~r~~~~~~~-~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~~--~~~-----~~~~~l~~~~~~~ 73 (321)
T TIGR00445 2 LLLGPKVIPMLKKLKAGQVI-RSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQL--GNP-----YVLLVLFVLLGYG 73 (321)
T ss_pred EEeHHHHHHHHHHhCCCCCc-ccccchhccCCCCCCCcChHHHHHHHHHHHHHHHHc--cch-----HHHHHHHHHHHHH
Confidence 35789999999999976655 66665554 55899999999999988776544321 111 1223455666788
Q ss_pred HHHHHhccC--------CCChhhHHHHHHHHHHHHHHH--HhCC-ceeeeCCCccccccccccchhHHHHHHHHHHHHHH
Q 024458 166 LLGFVDDVL--------DVPWRVKLILPSFAALPLLMA--YAGH-TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFC 234 (267)
Q Consensus 166 liG~~DD~~--------~ls~~~KLl~q~laal~l~~~--~~g~-~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~ 234 (267)
++|++||+. ++|++.|+++|+++++++... +.|. +.+.+| +.+...++++|+++++++++++++
T Consensus 74 ~iG~~DD~~~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~p-----~~~~~~~~lg~~~~~~~~~~iv~~ 148 (321)
T TIGR00445 74 FIGFVDDYRKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPDTFIYIP-----FIKDFMFDLGLFYILLAYFVLVGT 148 (321)
T ss_pred HHHHHHhHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEecc-----ccccccccccHHHHHHHHHHHHHH
Confidence 999999999 499999999999999876432 2232 233333 333223567889999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 235 TNSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 235 ~NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
+||+||+||+|||++|++++++.++++.++
T Consensus 149 ~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~ 178 (321)
T TIGR00445 149 SNAVNLTDGLDGLAIGPSAIAFGALAILAW 178 (321)
T ss_pred hhhhhhhcccchHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877754
No 9
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=99.95 E-value=3.6e-27 Score=210.03 Aligned_cols=150 Identities=31% Similarity=0.457 Sum_probs=111.5
Q ss_pred CCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH
Q 024458 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFT-ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLI 183 (267)
Q Consensus 105 ~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~-~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls~~~KLl 183 (267)
|+|+||++ +++|||+||++++.+++++..++...... .+.....++...+.+...++++|++||++++|+|.|+.
T Consensus 2 g~d~~k~~----~~~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~~l~~~~Kl~ 77 (223)
T cd06851 2 GKDMNKKG----NVMIPEPGGISILIGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRLTMGGWFKPV 77 (223)
T ss_pred CCCCCCCC----CCCCCCcchHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 67888764 47999999999999988877654321100 00001112334556677888999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 024458 184 LPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINL 263 (267)
Q Consensus 184 ~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~ 263 (267)
+|++++.+++........+..| +.+ ..++++|++++++++|+++++||+|++||+|||++|++++++.++++..
T Consensus 78 ~q~~~a~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~ 151 (223)
T cd06851 78 ALAFAAAPILLLGAYDSNLDFP-----LFG-GSVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFALAISL 151 (223)
T ss_pred HHHHHHHHHHHHHHhccceeec-----ccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 9999998765422222233333 444 2467789999999999999999999999999999999999999887765
Q ss_pred H
Q 024458 264 V 264 (267)
Q Consensus 264 ~ 264 (267)
+
T Consensus 152 ~ 152 (223)
T cd06851 152 L 152 (223)
T ss_pred H
Confidence 4
No 10
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=99.95 E-value=1e-26 Score=210.50 Aligned_cols=144 Identities=23% Similarity=0.337 Sum_probs=109.3
Q ss_pred cCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH
Q 024458 104 FGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLI 183 (267)
Q Consensus 104 ~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls~~~KLl 183 (267)
+|+| | +||+|+++|||+||++++.+++++..++... ..... .+....+.+...++++|++||+++++++.|+.
T Consensus 2 ~D~P-~--~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~ 74 (253)
T cd06854 2 LDIP-N--ERSSHTKPTPRGGGIAFVLAFLLALLLAAAA--GPLND--LSYLLLLIGLLLLAAVGFIDDLRSLSPKIRLL 74 (253)
T ss_pred CCCC-C--CCCCCCCCcCCcChHHHHHHHHHHHHHHHHc--cccch--hHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 5777 4 5799999999999999999988776554322 11100 12233466777889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 024458 184 LPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINL 263 (267)
Q Consensus 184 ~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~ 263 (267)
+|++++.++.+........ .+ .++.+|++++++++|+++++||+|++||+||||+|++++++.++++..
T Consensus 75 ~q~~~a~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~~~~ 143 (253)
T cd06854 75 VQLLAAALALYALGPLTSL---------LL--NFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLG 143 (253)
T ss_pred HHHHHHHHHHHHhhhHhhh---------cc--hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999988765322111110 01 245678999999999999999999999999999999999999987765
Q ss_pred HH
Q 024458 264 VI 265 (267)
Q Consensus 264 ~~ 265 (267)
..
T Consensus 144 ~~ 145 (253)
T cd06854 144 YL 145 (253)
T ss_pred HH
Confidence 43
No 11
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=99.94 E-value=2.5e-26 Score=200.53 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=107.7
Q ss_pred CCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHH
Q 024458 112 GTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVP-WRVKLILPSFAAL 190 (267)
Q Consensus 112 gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls-~~~KLl~q~laal 190 (267)
+||.|+++|||+||++++++++++..++... ... +....+.+...++++|++||+++++ +|.|+++|++++.
T Consensus 3 ~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~--~~~-----~~~~l~~~~~~~~~iG~~DD~~~l~~~~~kl~~q~~~a~ 75 (193)
T cd06912 3 IQKFHTRPTPRIGGVAIFLGLLAGLLLLSLL--SGS-----LLLLLLLAALPAFLAGLLEDITKRVSPRIRLLATFLSAL 75 (193)
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHc--cch-----HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHH
Confidence 5789999999999999999987766543321 111 1223455677888999999999999 9999999999998
Q ss_pred HHHHHHhCC--ceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 191 PLLMAYAGH--TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 191 ~l~~~~~g~--~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
++.. ..+. +....| +.+ ..++++|++++++++|+++++||+|++||+|||++|++++++.++++...
T Consensus 76 ~~~~-~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~ 144 (193)
T cd06912 76 LAVW-LLGASITRLDLP-----GLD-LLLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAF 144 (193)
T ss_pred HHHH-HhcCccceeecc-----ccc-cchhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 7654 2332 222222 333 23566899999999999999999999999999999999999999877654
No 12
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=99.94 E-value=1.5e-25 Score=205.71 Aligned_cols=144 Identities=33% Similarity=0.426 Sum_probs=111.2
Q ss_pred CCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHH
Q 024458 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLIL 184 (267)
Q Consensus 105 ~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls~~~KLl~ 184 (267)
|+|+||++ +++|||+||++++.+++++..++... .. ..+....+.+.+.++++|++||+.++|+|.|+++
T Consensus 2 g~d~hk~~----~~~vP~~GGi~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~lG~~DD~~~l~~~~Kl~~ 71 (280)
T cd06856 2 GRDVHKPG----KPEVPEMGGIAVLLGFSLGLLFLSAL--TH----SVEALALLITSLLAGLIGLLDDILGLSQSEKVLL 71 (280)
T ss_pred CccccccC----CCCCCCcchHHHHHHHHHHHHHHHHc--cc----hHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHH
Confidence 56777643 35899999999999998877654322 11 1234455677888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 185 PSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 185 q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
|+++|+++...+.+.+.+.+| +.+ ....+|++++++.+++++++||+||+||+|||++|++++++.+++++++
T Consensus 72 ~~~aa~~l~~~~~~~~~~~~p-----~~~--~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~ 144 (280)
T cd06856 72 TALPAIPLLVLKAGNPLTSLP-----IGG--RVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILL 144 (280)
T ss_pred HHHHHHHHHHHHHhcceeecC-----ccc--hhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999886544444445555 212 1222467788999999999999999999999999999999999988765
Q ss_pred H
Q 024458 265 I 265 (267)
Q Consensus 265 ~ 265 (267)
.
T Consensus 145 ~ 145 (280)
T cd06856 145 I 145 (280)
T ss_pred H
Confidence 4
No 13
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=99.93 E-value=2.7e-25 Score=200.64 Aligned_cols=142 Identities=30% Similarity=0.409 Sum_probs=107.5
Q ss_pred CCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHH
Q 024458 113 TPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPL 192 (267)
Q Consensus 113 r~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l 192 (267)
||+|+++|||+||++++.+++++..++.... ... ..+...++.+...++++|++||+++++++.|+..|+++++++
T Consensus 1 Rk~H~~~~P~~GGi~i~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~~a~~~ 76 (249)
T cd06853 1 RKVHKGPIPRLGGLAIFLGFLLALLLALLFP--FFL--LPELLGLLAGATIIVLLGLLDDLFDLSPKVKLLGQILAALIV 76 (249)
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHhcc--cch--hHHHHHHHHHHHHHHheehHHhccCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999887766543211 001 122334566777888999999999999999999999999876
Q ss_pred HHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 193 LMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 193 ~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
.. .+.....+ ..|+.+ ..++.+|++++++++|+++++||+|++||+|||++|++++++.++.+.+.
T Consensus 77 ~~--~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~ 142 (249)
T cd06853 77 VF--GGGVILSL---LGPFGG-GIILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILAL 142 (249)
T ss_pred HH--hcCeeeec---cccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 54 23211111 112222 24567899999999999999999999999999999999999988877653
No 14
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=99.92 E-value=1.5e-24 Score=188.17 Aligned_cols=133 Identities=32% Similarity=0.468 Sum_probs=102.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccCCC----ChhhHHHHHHHHHHHHHH
Q 024458 119 KVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDV----PWRVKLILPSFAALPLLM 194 (267)
Q Consensus 119 ~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~~l----s~~~KLl~q~laal~l~~ 194 (267)
+|||+||++++.+++++..++... .+ .+....+.+...++++|++||++++ |+|.|+.+|++++.++.+
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~~--~~-----~~~~~~l~~~~~~~~iG~~DD~~~l~~gl~~~~kl~~q~~~a~~~~~ 73 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIPH--SN-----TLILLALLSGLVAGIVGFIDDLLGLKVELSEREKLLLQILAALFLLL 73 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc--ch-----HHHHHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999988776554311 11 1223345677788899999999999 999999999999987654
Q ss_pred HHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 024458 195 AYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLVI 265 (267)
Q Consensus 195 ~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~~ 265 (267)
.....+.+..| + + ..++++|++++++++|+++++||+|++||+|||++|++++++.++.+.++.
T Consensus 74 ~~~~~~~~~~~-----~-~-~~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~ 137 (185)
T cd06499 74 IGGGHTTVTTP-----L-G-FVLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALL 137 (185)
T ss_pred HHHHhceeecC-----c-c-chhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 32222233333 2 3 246778999999999999999999999999999999999999988877643
No 15
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=99.90 E-value=2.5e-23 Score=191.08 Aligned_cols=144 Identities=24% Similarity=0.340 Sum_probs=104.3
Q ss_pred CCCCCccCCCcchHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhccC--------CCChhhHHHH
Q 024458 113 TPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVL--------DVPWRVKLIL 184 (267)
Q Consensus 113 r~~H~~~tP~~GGIai~~~fli~~ll~~~~~~~~~~~~l~~~~~~l~~~~~~~liG~~DD~~--------~ls~~~KLl~ 184 (267)
++.|+++|||+||++++.+++++..++... .+. +....+.+.+.++++|++||+. ++|++.|+++
T Consensus 4 ~~~h~~~~P~~GGiai~~~~~~~~~~~~~~--~~~-----~~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~ 76 (280)
T cd06852 4 SHLKKAGTPTMGGILFILAILISTLLWADL--DSP-----EVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLL 76 (280)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHHHHc--ccH-----HHHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHH
Confidence 367999999999999999988876654321 111 1223455666788999999999 5699999999
Q ss_pred HHHHHHHHHHHHhCCceeeeCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 185 PSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 185 q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
|++++.++......... ..+....|+.+...++++|++++++++|+++++|++||+||+||+++|++++++.++++...
T Consensus 77 q~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~ 155 (280)
T cd06852 77 QFLIAIVFALLLYYFNG-SGTLITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAY 155 (280)
T ss_pred HHHHHHHHHHHHHHhcc-cccceeccccccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHH
Confidence 99998877543211000 00000001122124677899999999999999999999999999999999999988877654
No 16
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1e-24 Score=200.69 Aligned_cols=192 Identities=50% Similarity=0.852 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHHHHhhc------
Q 024458 71 RSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF------ 144 (267)
Q Consensus 71 ~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~~~~~~------ 144 (267)
+++..+...+..++..+..+.|.+.....+.|++|+|.||++| .+.|+.-|.....++++..+.|.++.+
T Consensus 4 s~l~~n~~~s~~~y~at~~~iPr~g~~Fi~~~l~g~dl~k~~~----~~~pe~~gai~a~V~l~v~~~fIP~pfm~~~~~ 79 (418)
T KOG2788|consen 4 SALLINVGFSSAGYEATVMLIPRVGVSFIKAGLFGKDLNKDNR----PVIPETIGAISAAVYLIVMFIFIPFPFMFRGTP 79 (418)
T ss_pred chhhhhhhhhhhhhhhhhhccccccceeeeecccccccCcCCc----ccCchhhhhHHHHHHHHHHHhhcccccccCCCC
Confidence 4456677888889999999999999999999999999998765 479999999999998888877765533
Q ss_pred -c-----------cchhhHHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHH---hCCceeeeCCCcc
Q 024458 145 -T-----------ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAY---AGHTSIIIPKPLV 209 (267)
Q Consensus 145 -~-----------~~~~~l~~~~~~l~~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l~~~~---~g~~~i~ip~~~~ 209 (267)
. -++..+.++++.+++++.+.++|+.||+.+++||+|+.++.++++++++.| .|.|.+.+|++..
T Consensus 80 ~~d~~v~e~~~~~Fphd~l~~l~sallsi~~~ilLGfaDD~ldlrWRhKl~lPt~AtlPLLmVYyv~~g~TtV~iP~~~r 159 (418)
T KOG2788|consen 80 QGDVSVVESFQFNFPHDKLVELLSALLSICSMILLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVSFGVTTVVIPKPLR 159 (418)
T ss_pred cccccccccccccCChHHHHHHHHHHHHHhHHHHhcccchhccchhhhheeccchhhCceEEEEEEcCCceEEEecHHHH
Confidence 0 012246788899999999999999999999999999999999999998765 6889999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHh
Q 024458 210 PYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAVSINLVIL 266 (267)
Q Consensus 210 p~~g~~~l~lg~l~~~l~v~~ivg~~NAvNl~DGlDGLa~G~siI~~~~l~i~~~~~ 266 (267)
++.|...+|+|.+|++++....++|+|++|+..|+|||+.||+++++....++++.+
T Consensus 160 ~~l~~~~~nlg~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~ 216 (418)
T KOG2788|consen 160 NILGLTSLNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVY 216 (418)
T ss_pred hhhccceecccchHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHH
Confidence 999877889999999999999999999999999999999999999999999887764
No 17
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=99.78 E-value=1.5e-18 Score=146.92 Aligned_cols=102 Identities=30% Similarity=0.526 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHhCCceeeeCCCccccccccccchh-HHHHHHHHHHHHHHH
Q 024458 157 ALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (267)
Q Consensus 157 ~l~~~~~~~liG~~DD~~~ls~~~KLl~q~laal~l~~~~~g~~~i~ip~~~~p~~g~~~l~lg-~l~~~l~v~~ivg~~ 235 (267)
.+.+...++++|++||++++|++.|+.+|.+++.++...+.+.+.+..| +.+ ...+++ +++++++++++++.+
T Consensus 4 ~l~~~~~~~~iG~~DD~~~l~~~~rl~~q~~~a~~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~l~~~~i~~~~ 77 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLKGLSPRLRLLLQLLAALLLVFLGGGLTSLGIP-----FGG-GIINLGPWLAIILTVLWIVGFI 77 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcccccc-----cCc-chHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999887643333343333 332 356777 788999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 024458 236 NSINIHAGLNGLEVGQTVVIASAVSINLV 264 (267)
Q Consensus 236 NAvNl~DGlDGLa~G~siI~~~~l~i~~~ 264 (267)
||+|++||+||+++|++++++..+.+.+.
T Consensus 78 Na~N~~DG~dGla~~~~~i~~~~l~~~~~ 106 (159)
T PF00953_consen 78 NAFNFMDGIDGLAAGVSIIALLALAVIAY 106 (159)
T ss_pred hHHHhhccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988774
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=93.09 E-value=0.012 Score=29.54 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.9
Q ss_pred ccCCCcchHHH
Q 024458 118 IKVPESLGIVV 128 (267)
Q Consensus 118 ~~tP~~GGIai 128 (267)
..||+|||+.+
T Consensus 2 ~gTPTMGGi~~ 12 (13)
T PF10555_consen 2 SGTPTMGGIVF 12 (13)
T ss_pred CCCccceeEEE
Confidence 57999999754
No 19
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=61.79 E-value=34 Score=26.35 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=19.6
Q ss_pred CCCCchhHHHHHHHHhhhhHHHHHHHHHhhh
Q 024458 36 IAPPKSGLIFKLCLFFAIPYFYLLFYHYKIE 66 (267)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (267)
.+-|.|-...-+.++++=-.....||...-+
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~ 57 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQ 57 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 4556676666666665666667777775443
No 20
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=47.40 E-value=1.4e+02 Score=25.01 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024458 68 ELQRSILINAGLSLAGFFITQKMIPVASRYVLRR 101 (267)
Q Consensus 68 ~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~ 101 (267)
.+++..+..+.+.++|.+++...+....++..|+
T Consensus 86 ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r~ 119 (141)
T PRK04125 86 VMSQYPVQIIGVIIVATILLLACTGLFSQFILGK 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666677777777776666665444
No 21
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=44.62 E-value=1.4e+02 Score=27.27 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 024458 42 GLIFKLCLFFAIPYFYLLFYHYKIESELQ-----RSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (267)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l 103 (267)
...++.+.+.-.|.....-.+ +..+... ......+..+++||+++++.+.++.|+.+|.++
T Consensus 180 ~~A~~fSFllsiP~ilga~~l-~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~~~~~ 245 (259)
T PF02673_consen 180 EEAARFSFLLSIPAILGAGLL-ELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLKRRKL 245 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 345566666666766654433 2222221 244567788899999999999999999988764
No 22
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=43.84 E-value=1.1e+02 Score=21.38 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024458 54 PYFYLLFYHYKIESE-LQRSILINAGLSLAGFFITQKMIPVASRYVLR 100 (267)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r 100 (267)
=..++.+.+....++ .++-+-....+..++|.++++..|...|+..|
T Consensus 11 mS~v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~kl~~~ 58 (60)
T PF11391_consen 11 MSFVMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPLVRKLVER 58 (60)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677766665 44445566888889999999999999888765
No 23
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=42.62 E-value=1.8e+02 Score=26.35 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=25.0
Q ss_pred HHHHhhhhHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024458 47 LCLFFAIPYFYLLFYHYKI--------------ESELQRSILINAGLSLAGFFITQKMI 91 (267)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~l~aflvs~~l~ 91 (267)
..++++.|..+++++-+.- ++...+.+...+..++++.+++..+.
T Consensus 35 ~~~~~~~Pl~~~l~~sf~~~~~~tl~n~~~~~~~~~~~~~l~~Sl~~~~~~~~l~~~~g 93 (296)
T PRK15050 35 LAPLVVYPLVRVVLQSLTGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLG 93 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888888775531 22345555555555555555544444
No 24
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=40.80 E-value=1.1e+02 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=16.9
Q ss_pred CCCchhHHHHHHHHhhhhHHHHHHHHH
Q 024458 37 APPKSGLIFKLCLFFAIPYFYLLFYHY 63 (267)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (267)
+-|.|-...-+.+.++=-.....||+.
T Consensus 29 ~sP~W~~~~m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 29 SNPRWFVPLFVALMIIGLIWLVVYYLS 55 (87)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666665666665556666677774
No 25
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.63 E-value=2.9e+02 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=22.4
Q ss_pred cCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHH
Q 024458 101 RNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAIL 138 (267)
Q Consensus 101 ~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll 138 (267)
.|..|.+-+ + .+.|+..+...||..+.++..++.++
T Consensus 437 ~G~~G~~~~-~-~p~~r~c~~~tGg~~Lm~gv~~~Flf 472 (806)
T PF05478_consen 437 CGCCGYRRR-A-DPTDRGCSSNTGGNFLMAGVGLSFLF 472 (806)
T ss_pred HhhccCCCC-C-CCcccCCCCCccHHHHHHHHHHHHHH
Confidence 466664422 2 24566778999998777766554433
No 26
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=32.35 E-value=1.9e+02 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Q 024458 80 SLAGFFITQKMIPVASRYVLRRN 102 (267)
Q Consensus 80 ~l~aflvs~~l~p~~i~~~~r~~ 102 (267)
++.+++.=.++.|++.++..|+-
T Consensus 61 a~~~l~~K~iliP~lL~r~~~k~ 83 (216)
T PRK11492 61 SITAFITKVLLVPLIMTYAARKL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666778888887765553
No 27
>PRK01821 hypothetical protein; Provisional
Probab=29.92 E-value=3.2e+02 Score=22.56 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024458 67 SELQRSILINAGLSLAGFFITQKMIPVASRYVLRR 101 (267)
Q Consensus 67 ~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~ 101 (267)
+..++..+..+...++|.+++...+.+..++..|+
T Consensus 87 ~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~ 121 (133)
T PRK01821 87 DLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGE 121 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555556666677777777777666666554
No 28
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=28.50 E-value=2.3e+02 Score=21.89 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=16.5
Q ss_pred CCCchhHHHHHHHHhhhhHHHHHHHHH
Q 024458 37 APPKSGLIFKLCLFFAIPYFYLLFYHY 63 (267)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (267)
+.|.+-...-+.+.++=-.....||+.
T Consensus 28 ~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 28 PSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666665566555556666677775
No 29
>COG5373 Predicted membrane protein [Function unknown]
Probab=26.94 E-value=8.4e+02 Score=26.50 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=28.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHH
Q 024458 63 YKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAV 131 (267)
Q Consensus 63 ~~~~~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~ 131 (267)
|.+++-+..+-.+...+.+.+.++...- .+.||+++ -.+ +.+. .....+=+.+|+....+
T Consensus 153 Y~~E~gl~~p~vRl~~aAv~~lvL~~~G-----e~lRr~~~-~~~-~~~y--~~aP~vLtgaGa~~Lf~ 212 (931)
T COG5373 153 YAIEAGLFGPEVRLAGAAVLGLVLVAGG-----EWLRRKGF-PVP-RQGY--ANAPAVLTGAGALVLFG 212 (931)
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHhH-----HHHHhccC-ccc-cccc--cCCchhhcccchHHHHH
Confidence 4446656666666666666555443322 34456653 212 2111 11123556777655433
No 30
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=24.62 E-value=1.1e+02 Score=19.86 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 024458 244 LNGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 244 lDGLa~G~siI~~~~l~i~~~~~~ 267 (267)
+.|..-|..-+....+.+.++.||
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 357777888888888888888776
No 31
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=24.21 E-value=3.8e+02 Score=21.58 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=10.9
Q ss_pred HHHHHHHHcCccCCcCCCCC
Q 024458 93 VASRYVLRRNLFGYDINKKG 112 (267)
Q Consensus 93 ~~i~~~~r~~l~~~~i~k~g 112 (267)
......+|.++-+.++.+++
T Consensus 81 yi~~~~~~~~l~~~Ev~~~~ 100 (129)
T PF11683_consen 81 YITFATRKLHLDDNEVSAKE 100 (129)
T ss_pred HHHHHHHHhCCCccccCccc
Confidence 33444567776665655443
No 32
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=22.63 E-value=2.9e+02 Score=26.66 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024458 51 FAIPYFYLLFYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRN 102 (267)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~ 102 (267)
++-||.|-+|-+|..+++.- ...++.+|..+.++.+..-..+.|.|
T Consensus 52 LQGpY~Y~LY~~yg~~~~qI------a~Lf~~Gf~Ss~i~g~~~G~laD~~G 97 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQI------AILFVAGFASSAIFGTFVGSLADRYG 97 (354)
T ss_pred hhcchhHHHHHHcCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35599999998888876652 33456677788888888777776655
No 33
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=22.21 E-value=1.3e+02 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 024458 244 LNGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 244 lDGLa~G~siI~~~~l~i~~~~~~ 267 (267)
+.|..-|..-+....+.+.++.||
T Consensus 6 L~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 6 LFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 356777777778888888888776
No 34
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.72 E-value=4e+02 Score=23.52 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCCCCchhHHHHHHHHhhhhHHHHHHHHHh-hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCc
Q 024458 35 PIAPPKSGLIFKLCLFFAIPYFYLLFYHYK-IE---SELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYD 107 (267)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l~~~~ 107 (267)
|.+||.|...+...+ .+.|-+..+=.+.. .. +...+.+ +...+..-+.+++.+|++-+.++.+- ..|.
T Consensus 114 pk~pPrWK~~Llv~~-~lYP~vl~~N~~~gp~l~~~~l~~~~L---i~t~~~v~LltYf~iP~vs~l~~~WL-~~q~ 185 (195)
T COG3224 114 PKTPPRWKMNLLVLL-VLYPVVLGFNLLLGPKLGFLPLPTRVL---IGTLCSVSLLTYFVIPLVSRLYAFWL-YPQG 185 (195)
T ss_pred CCCCchhHHHHHHHH-HHHHHHHHHHHhhccccCCCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 477888877644433 34555543333322 11 1122222 22233345689999999999887663 4443
No 35
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=21.41 E-value=1.4e+02 Score=19.34 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 024458 244 LNGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 244 lDGLa~G~siI~~~~l~i~~~~~~ 267 (267)
+.|..-|..-+....+.+.++.||
T Consensus 6 L~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 346677777777888888888776
No 36
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=5.7e+02 Score=23.80 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=32.7
Q ss_pred HHHHhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024458 47 LCLFFAIPYFYLLFYHYKI----------ESELQRSILINAGLSLAGFFITQKMIPVASRYVLRR 101 (267)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~ 101 (267)
+.++++.|.++++.+..+. +++..+.+...+..+.++-+++.++.-....+..|+
T Consensus 23 l~l~~llPl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~S~~~a~~atl~~~vfg~~~a~vL~R~ 87 (274)
T COG0555 23 LLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLPLAWVLVRY 87 (274)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566777999988887743 334444555555555555555555554444554443
No 37
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=20.53 E-value=6.7e+02 Score=23.19 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhhHHHHHHHH--HhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 024458 42 GLIFKLCLFFAIPYFYLLFYH--YKIESELQ--RSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (267)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l 103 (267)
...++.+-+.-.|-..-.-.+ ++..+... ......+..+++||+++++.+..+.++.+|+++
T Consensus 186 ~~Aa~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~~~g~i~afi~~~l~i~~ll~~~~~~~~ 251 (276)
T PRK12554 186 EAAARFSFLLAIPAVFGAGLLELYKIFHDPNASTLLGPTAVAFIVAFIVGYISIAWFMNFLKKGSL 251 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344566666666665533332 11101010 011234677888999999999999999887763
No 38
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=20.49 E-value=5.9e+02 Score=23.08 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=7.1
Q ss_pred HHHHHHHHhh
Q 024458 233 FCTNSINIHA 242 (267)
Q Consensus 233 g~~NAvNl~D 242 (267)
-+.||++..+
T Consensus 255 Li~NA~k~~~ 264 (356)
T PRK10755 255 LVENAHRYSP 264 (356)
T ss_pred HHHHHHhhCC
Confidence 4578888763
No 39
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=20.39 E-value=6e+02 Score=23.34 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 024458 43 LIFKLCLFFAIPYFYLLFYHYKIESELQ----RSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (267)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~l~aflvs~~l~p~~i~~~~r~~l 103 (267)
..++.+-+.-.|-..-.-.+ +..+... ......+..++.||+++++.+.++.|+.+|+++
T Consensus 185 ~Aa~fSFLlsiPai~gA~~l-~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~~~~~~ 248 (268)
T PRK00281 185 AAAEFSFLLAIPAMLGASLL-DLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYIKRHSF 248 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34566666666665533332 2111100 111234677888999999999999999887763
Done!