Query 024458
Match_columns 267
No_of_seqs 234 out of 1188
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_G Cytochrome B6F complex 25.8 64 0.0022 20.0 2.9 24 244-267 6-29 (37)
2 2xq2_A Sodium/glucose cotransp 21.7 2.3E+02 0.0078 27.2 7.7 23 82-104 559-581 (593)
3 1vf5_G Protein PET G; photosyn 21.0 61 0.0021 20.1 2.1 23 245-267 7-29 (37)
4 3aqp_A Probable secdf protein- 12.3 5.9E+02 0.02 25.2 8.2 39 66-104 690-729 (741)
5 2kt5_B ICP27; chaperone, mRNA 10.9 1.8E+02 0.006 18.1 2.4 10 2-11 11-20 (40)
6 1s5r_A High mobility group box 10.0 51 0.0017 18.5 -0.3 7 1-7 16-22 (26)
7 3d31_C Sulfate/molybdate ABC t 7.7 9.5E+02 0.032 20.0 8.0 45 47-91 48-102 (295)
8 4dx5_A Acriflavine resistance 7.4 9E+02 0.031 24.7 7.6 36 67-102 997-1033(1057)
9 4b4a_A TATC, SEC-independent p 5.2 9.1E+02 0.031 20.5 5.3 34 66-99 7-40 (249)
10 3l1l_A Arginine/agmatine antip 4.8 4.3E+02 0.015 23.3 3.0 105 28-139 214-338 (445)
No 1
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=25.84 E-value=64 Score=20.00 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhC
Q 024458 244 LNGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 244 lDGLa~G~siI~~~~l~i~~~~~~ 267 (267)
+.|...|..-+....+.+.++.||
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 357778888888888888888876
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=21.69 E-value=2.3e+02 Score=27.21 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcc
Q 024458 82 AGFFITQKMIPVASRYVLRRNLF 104 (267)
Q Consensus 82 ~aflvs~~l~p~~i~~~~r~~l~ 104 (267)
.+.+-+.+++...+|..+|+.-.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~ 581 (593)
T 2xq2_A 559 AGVIGTILLISYGIKKLIKASYK 581 (593)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666665533
No 3
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=20.95 E-value=61 Score=20.10 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Q 024458 245 NGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 245 DGLa~G~siI~~~~l~i~~~~~~ 267 (267)
.|...|..-+....+.+.++.||
T Consensus 7 ~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp --CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhHHHhhHHHHHHHHHHHHHHHH
Confidence 46677777788888888888877
No 4
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=12.34 E-value=5.9e+02 Score=25.24 Aligned_cols=39 Identities=10% Similarity=-0.022 Sum_probs=25.3
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Q 024458 66 ESELQRSI-LINAGLSLAGFFITQKMIPVASRYVLRRNLF 104 (267)
Q Consensus 66 ~~~~~~~i-~~~~~~~l~aflvs~~l~p~~i~~~~r~~l~ 104 (267)
+.+..+++ ....+..+++.+.++++.|.+..+..++...
T Consensus 690 g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~~ 729 (741)
T 3aqp_A 690 GGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRKA 729 (741)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 44445554 3345556778888999999998888776533
No 5
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=10.91 E-value=1.8e+02 Score=18.13 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.4
Q ss_pred hhhhcccccc
Q 024458 2 AARKRASSRA 11 (267)
Q Consensus 2 ~~~~~~~~~~ 11 (267)
++|||+++.+
T Consensus 11 G~RR~~s~~E 20 (40)
T 2kt5_B 11 GARRPSCSPE 20 (40)
T ss_dssp SSCCCCCCCC
T ss_pred cccCcCCCcC
Confidence 3455554333
No 6
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=10.05 E-value=51 Score=18.47 Aligned_cols=7 Identities=57% Similarity=0.828 Sum_probs=3.2
Q ss_pred Chhhhcc
Q 024458 1 MAARKRA 7 (267)
Q Consensus 1 ~~~~~~~ 7 (267)
|++|||+
T Consensus 16 mar~r~a 22 (26)
T 1s5r_A 16 MARQRRA 22 (26)
T ss_dssp HHHTTTC
T ss_pred HHHHhhh
Confidence 4444444
No 7
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=7.69 E-value=9.5e+02 Score=20.05 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=24.2
Q ss_pred HHHHhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024458 47 LCLFFAIPYFYLLFYHYKI----------ESELQRSILINAGLSLAGFFITQKMI 91 (267)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~l~aflvs~~l~ 91 (267)
+.++++.|..++++..+.. +++..+.+...+...+.+.+++..+.
T Consensus 48 ~~~~~~~P~~~~~~~s~~~~l~ny~~~~~~~~~~~~l~nTl~~~~~~~~l~~~lg 102 (295)
T 3d31_C 48 LFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLG 102 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566888777653211 23445555555555555555555544
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.38 E-value=9e+02 Score=24.71 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024458 67 SELQRSILI-NAGLSLAGFFITQKMIPVASRYVLRRN 102 (267)
Q Consensus 67 ~~~~~~i~~-~~~~~l~aflvs~~l~p~~i~~~~r~~ 102 (267)
.+..+++-. ..+..+++.++++++.|.+..+..++.
T Consensus 997 ~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~ 1033 (1057)
T 4dx5_A 997 SGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466666643 455567789999999999998887764
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.22 E-value=9.1e+02 Score=20.51 Aligned_cols=34 Identities=18% Similarity=0.030 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024458 66 ESELQRSILINAGLSLAGFFITQKMIPVASRYVL 99 (267)
Q Consensus 66 ~~~~~~~i~~~~~~~l~aflvs~~l~p~~i~~~~ 99 (267)
.+|+|+-+..++++.++++++++.....+..+..
T Consensus 7 L~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~ 40 (249)
T 4b4a_A 7 LRELRYRLIISIIAFLIGSGIAFYFAKYVFEILK 40 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889999999999998888777776654
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=4.75 E-value=4.3e+02 Score=23.32 Aligned_cols=105 Identities=11% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH--------------------HHHHHHHHHHHHHHH
Q 024458 28 SQEHADPPIAPPKSGLIFKLCLFFAIPYFYLLFYHYKIESELQRS--------------------ILINAGLSLAGFFIT 87 (267)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------i~~~~~~~l~aflvs 87 (267)
.+|.++|....||--........++.-.....+....-.++..+. ....+.+.+.+....
T Consensus 214 ~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 293 (445)
T 3l1l_A 214 AGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGW 293 (445)
T ss_dssp GGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCccCCcCCCCCCCCCCccCCCcchHHHHHHHHHHHHHH
Q 024458 88 QKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILF 139 (267)
Q Consensus 88 ~~l~p~~i~~~~r~~l~~~~i~k~gr~~H~~~tP~~GGIai~~~fli~~ll~ 139 (267)
....+....-+-|.|.+ .+.-.+.|++++|..+ +.+..+++.++.
T Consensus 294 ~~~~sR~~~~~a~dg~l----P~~~~~~~~~~~P~~a---~~~~~~~~~~~~ 338 (445)
T 3l1l_A 294 TLLAGQTAKAAADDGLF----PPIFARVNKAGTPVAG---LIIVGILMTIFQ 338 (445)
T ss_dssp HHHHHHHHHHHHHTTSS----CGGGGCCCTTCCCHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC----cHHHHhcCCCCCCHHH---HHHHHHHHHHHH
Done!