Query 024458
Match_columns 267
No_of_seqs 234 out of 1188
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 08:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024458.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024458hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 18.2 58 0.0042 17.6 2.9 23 245-267 7-29 (30)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 4.3 4.4E+02 0.032 17.1 4.1 21 78-98 35-55 (100)
3 d1rh5b_ f.23.28.1 (B:) Preprot 3.4 3.5E+02 0.026 16.5 2.5 13 158-170 31-43 (56)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 3.3 5.5E+02 0.04 15.8 4.7 14 84-97 12-25 (86)
5 d1pv7a_ f.38.1.2 (A:) Lactose 3.1 1.7E+02 0.012 22.2 0.8 14 88-101 273-286 (417)
6 d2axth1 f.23.33.1 (H:2-65) Pho 3.0 3.9E+02 0.028 16.7 2.4 8 119-126 26-33 (64)
7 d1rkla_ f.23.30.1 (A:) Oligosa 2.7 4.9E+02 0.036 14.1 3.7 16 242-257 5-20 (36)
8 d1xrda1 f.3.1.1 (A:1-52) Light 2.7 6.1E+02 0.045 15.1 3.6 19 227-245 27-45 (52)
9 d2gqba1 a.282.1.1 (A:1-130) Hy 2.5 6.9E+02 0.051 17.6 3.7 11 37-47 43-53 (130)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.3 6.7E+02 0.049 16.4 3.4 16 82-97 45-60 (107)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.25 E-value=58 Score=17.63 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Q 024458 245 NGLEVGQTVVIASAVSINLVILY 267 (267)
Q Consensus 245 DGLa~G~siI~~~~l~i~~~~~~ 267 (267)
.|+.-|..=+....+.+.+++||
T Consensus 7 ~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHHHHh
Confidence 45566666667777777777775
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.33 E-value=4.4e+02 Score=17.10 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024458 78 GLSLAGFFITQKMIPVASRYV 98 (267)
Q Consensus 78 ~~~l~aflvs~~l~p~~i~~~ 98 (267)
+..++..++...+...+.|+-
T Consensus 35 i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 334444556666666665553
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.41 E-value=3.5e+02 Score=16.48 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 024458 158 LASICFMLLLGFV 170 (267)
Q Consensus 158 l~~~~~~~liG~~ 170 (267)
-++.++++++||.
T Consensus 31 ~iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 31 ALGISLLGIIGYI 43 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666664
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.26 E-value=5.5e+02 Score=15.76 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 024458 84 FFITQKMIPVASRY 97 (267)
Q Consensus 84 flvs~~l~p~~i~~ 97 (267)
+.+++.....+.+.
T Consensus 12 l~i~~~i~~~i~~~ 25 (86)
T d2vv5a3 12 IIVGLIIARMISNA 25 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=1.7e+02 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.085 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHc
Q 024458 88 QKMIPVASRYVLRR 101 (267)
Q Consensus 88 ~~l~p~~i~~~~r~ 101 (267)
........++.+|.
T Consensus 273 ~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 273 ASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred ccchhhhhhhhccc
Confidence 33333334444443
No 6
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.01 E-value=3.9e+02 Score=16.70 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=5.1
Q ss_pred cCCCcchH
Q 024458 119 KVPESLGI 126 (267)
Q Consensus 119 ~tP~~GGI 126 (267)
.||.||..
T Consensus 26 TTplMgv~ 33 (64)
T d2axth1 26 TTPLMAVF 33 (64)
T ss_dssp THHHHHHH
T ss_pred ccHHHHHH
Confidence 47877753
No 7
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.74 E-value=4.9e+02 Score=14.09 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=9.0
Q ss_pred hchhHHHHHHHHHHHH
Q 024458 242 AGLNGLEVGQTVVIAS 257 (267)
Q Consensus 242 DGlDGLa~G~siI~~~ 257 (267)
|-+||++....+....
T Consensus 5 ~qln~~~i~fgi~mmt 20 (36)
T d1rkla_ 5 EQLNSLAITFGIVMMT 20 (36)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred hhcCcEEeehhHHHHH
Confidence 4567777655544433
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.68 E-value=6.1e+02 Score=15.07 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhchh
Q 024458 227 MFLLAVFCTNSINIHAGLN 245 (267)
Q Consensus 227 ~v~~ivg~~NAvNl~DGlD 245 (267)
++=.+.-.++-+|..||-+
T Consensus 27 ~IHfiLLSt~rfNWleg~~ 45 (52)
T d1xrda1 27 LIHFILLSTERFNWLEGAS 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhccCccccccCCC
Confidence 3334566889999999864
No 9
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=2.50 E-value=6.9e+02 Score=17.59 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=4.5
Q ss_pred CCCchhHHHHH
Q 024458 37 APPKSGLIFKL 47 (267)
Q Consensus 37 ~~~~~~~~~~~ 47 (267)
+.+..-+..++
T Consensus 43 ~~~~VDV~aiL 53 (130)
T d2gqba1 43 AAPSIDVAPIL 53 (130)
T ss_dssp CCSSEECHHHH
T ss_pred CCCcccHHHHH
Confidence 33444444333
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.35 E-value=6.7e+02 Score=16.38 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 024458 82 AGFFITQKMIPVASRY 97 (267)
Q Consensus 82 ~aflvs~~l~p~~i~~ 97 (267)
+..++...+.....|+
T Consensus 45 I~~~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 45 VTIFVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3344555555555554
Done!