BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024459
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GMY|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
           Protein (Blp), Selenomethionine Derivative
 pdb|3GMY|B Chain B, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
           Protein (Blp), Selenomethionine Derivative
          Length = 154

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
           GP  H++FN   +++ KR            +    P  T    +YN    G T  +  A 
Sbjct: 48  GPQGHFFFNAADKLIHKR----------QXELFPAPKPTXRLATYNKTQTGXTEAQFWAA 97

Query: 209 LKRDLLPTMGRNLVYWP 225
           +  D    +      WP
Sbjct: 98  VPSDTCSALAEQYPNWP 114


>pdb|3GMX|B Chain B, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
           Protein (Blp) At 1.05 Angstrom Resolution
 pdb|3GMX|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-Like
           Protein (Blp) At 1.05 Angstrom Resolution
          Length = 154

 Score = 27.3 bits (59), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLTTTIFFSYNAALQGETTGEIVAR 208
           GP  H++FN   +++ KR            +    P  T    +YN    G T  +  A 
Sbjct: 48  GPQGHFFFNAADKLIHKRQM----------ELFPAPKPTMRLATYNKTQTGMTEAQFWAA 97

Query: 209 LKRDLLPTMGRNLVYWP 225
           +  D    +      WP
Sbjct: 98  VPSDTCSALAEQYPNWP 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,451,294
Number of Sequences: 62578
Number of extensions: 219684
Number of successful extensions: 458
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 3
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)