Query 024459
Match_columns 267
No_of_seqs 127 out of 1015
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrd_A LH-1, light-harvesting 33.5 59 0.002 22.1 4.1 31 131-161 7-43 (52)
2 1p58_D Envelope protein M; fla 10.8 2.8E+02 0.0097 19.9 3.9 40 84-124 22-61 (75)
3 2kii_A Putative uncharacterize 8.9 3.3E+02 0.011 22.0 4.2 70 149-218 3-78 (181)
4 1rh5_B Preprotein translocase 7.5 3.3E+02 0.011 19.5 3.1 28 130-157 30-57 (74)
5 3cqx_C BAG family molecular ch 6.8 1.1E+02 0.0039 22.8 0.3 18 21-38 4-21 (88)
6 2zko_A NS1, NS1A, non-structur 6.5 1.8E+02 0.0061 20.6 1.2 20 14-33 34-53 (73)
7 2vqc_A Hypothetical 13.2 kDa p 5.9 1.2E+02 0.0043 23.0 0.1 27 115-142 31-57 (118)
8 3mp7_B Preprotein translocase 5.4 7.7E+02 0.026 16.7 4.8 27 130-156 26-52 (61)
9 4aw6_A CAAX prenyl protease 1 4.9 1.6E+03 0.054 21.2 7.2 49 141-190 131-186 (482)
10 1szw_A TRNA pseudouridine synt 4.8 2.4E+02 0.0081 26.2 1.2 29 232-260 205-234 (379)
No 1
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=33.50 E-value=59 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhHH------HHHHhh
Q 024459 131 SIDSIRTLRMAVYGMLILGPSQHYW------FNFLSR 161 (267)
Q Consensus 131 ~~D~~Rt~r~a~~G~~~~GP~~h~W------y~~Ldr 161 (267)
-+|++|++.......++.+-+-|+- |+|||.
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~ 43 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccC
Confidence 3799999877776666778888875 777773
No 2
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=10.77 E-value=2.8e+02 Score=19.87 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHhhhCChhHHHHHHHHHHHHHHHHHHhh
Q 024459 84 SSSKFGFVGWYLGKLESHPLTTKGISSSLIYVAADLTSQMI 124 (267)
Q Consensus 84 ~~~~~~l~~~Y~~~L~~~Pl~Tk~iTsgvl~~~gDllAQ~i 124 (267)
+++..+-+.+-+++.-+||..+-++. .+.+.+|+...|++
T Consensus 22 ~~~~~~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 22 SEGAWKHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred cchHHHHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 34555666777888999999998888 88888998888875
No 3
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=8.88 E-value=3.3e+02 Score=22.01 Aligned_cols=70 Identities=10% Similarity=-0.050 Sum_probs=45.4
Q ss_pred hhhHhHHHHHHhhhcCCCchhHHHHHHHHhhhhhhhhH------HHHHHHHHHhhcCCChHHHHHHHhhchHHHHh
Q 024459 149 GPSQHYWFNFLSRILPKRDALTTLKKIFMGQAIYGPLT------TTIFFSYNAALQGETTGEIVARLKRDLLPTMG 218 (267)
Q Consensus 149 GP~~h~Wy~~Ldrlfp~~~~~~vl~KVllDQ~v~aP~~------~~~F~~~~~~leG~s~~~i~~~lk~~~~~~l~ 218 (267)
|-+..-|-.++...++...+..++.+.-++..+|.|.- +.-.+...+-..|.+.+++++.+-+.+...+.
T Consensus 3 G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 44566778888888877777777777777666666653 22233334456688888888776665555433
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=7.51 E-value=3.3e+02 Score=19.49 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhHhHHHH
Q 024459 130 GSIDSIRTLRMAVYGMLILGPSQHYWFN 157 (267)
Q Consensus 130 ~~~D~~Rt~r~a~~G~~~~GP~~h~Wy~ 157 (267)
+.=++.++++....|++++|-+++.-+-
T Consensus 30 dr~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 30 TKDEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346779999999999999998876553
No 5
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=6.84 E-value=1.1e+02 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=12.6
Q ss_pred hhhhhhhchhhhhhhhhh
Q 024459 21 EQQQSLHGVSSFIQPLLT 38 (267)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (267)
||+.+||-|.+.|.-+..
T Consensus 4 ~Qe~aL~~vn~lID~~v~ 21 (88)
T 3cqx_C 4 GSEESLKHATRIIDEVVS 21 (88)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788999999999877665
No 6
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=6.54 E-value=1.8e+02 Score=20.60 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.3
Q ss_pred hHHHhhhhhhhhhhchhhhh
Q 024459 14 SFLLRLSEQQQSLHGVSSFI 33 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (267)
-||-||-..|.||.|-+|-+
T Consensus 34 PFldRlrRDQksLrGrgsTL 53 (73)
T 2zko_A 34 PFLDRLRRDQKSLRGRGSTL 53 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHhccCCccc
Confidence 58999999999999988754
No 7
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=5.95 E-value=1.2e+02 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 024459 115 VAADLTSQMITLPPSGSIDSIRTLRMAV 142 (267)
Q Consensus 115 ~~gDllAQ~i~~~~~~~~D~~Rt~r~a~ 142 (267)
.+-|++||.-... +..++..|+++|.+
T Consensus 31 sledilaqfeis~-~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISV-PSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHheecc-chHhHHHHHHHHHH
Confidence 4679999985432 23588889998865
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.44 E-value=7.7e+02 Score=16.74 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhHhHHH
Q 024459 130 GSIDSIRTLRMAVYGMLILGPSQHYWF 156 (267)
Q Consensus 130 ~~~D~~Rt~r~a~~G~~~~GP~~h~Wy 156 (267)
+.=++.++++....|+++.|-+.+.-+
T Consensus 26 d~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 26 NWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999876554
No 9
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=4.87 E-value=1.6e+03 Score=21.16 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHhhhhhhHhHHHH-HHhhhcCC--Cc----hhHHHHHHHHhhhhhhhhHHHHH
Q 024459 141 AVYGMLILGPSQHYWFN-FLSRILPK--RD----ALTTLKKIFMGQAIYGPLTTTIF 190 (267)
Q Consensus 141 a~~G~~~~GP~~h~Wy~-~Ldrlfp~--~~----~~~vl~KVllDQ~v~aP~~~~~F 190 (267)
.+++.+..=|+.. +-. .+|..++- .+ +.+.++..++.+++..|+...++
T Consensus 131 ~l~~~l~~LP~~~-Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~ 186 (482)
T 4aw6_A 131 TLFSALAGLPWSL-YNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLL 186 (482)
T ss_dssp HHHHHHHHHHHHH-HHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH-HHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556542 223 36766652 22 46788899999999988765443
No 10
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=4.82 E-value=2.4e+02 Score=26.21 Aligned_cols=29 Identities=3% Similarity=-0.065 Sum_probs=20.1
Q ss_pred hceecCCcchhhhhHH-HHHHHHHHHHHhc
Q 024459 232 FKFIPVHLQPLVNSSF-AYVWTIYLTYKAS 260 (267)
Q Consensus 232 F~~VP~~~Rvlf~n~v-s~~Wn~yLS~~a~ 260 (267)
+.-+|...|.+|++.. +++||-++|..-.
T Consensus 205 ~~~ipr~lr~~yv~AyQS~lfN~~lS~Ri~ 234 (379)
T 1szw_A 205 TPVRDRNKRSFWLSAARSALFNQIVAERLK 234 (379)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999988888775 8999999997654
Done!