BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024461
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGW3|RP12A_ARATH 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis
thaliana GN=RPN12A PE=1 SV=1
Length = 267
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/267 (83%), Positives = 243/267 (91%)
Query: 1 MDPKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTL 60
MDP+LTEVSQQF+RFKAA RKDYNTC+ LLSQLKVLLT F SLPPLFE++PNA +ELT+
Sbjct: 1 MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTI 60
Query: 61 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQN 120
ARDIYEHAV+LSVK EDQDAFERDFFQLKPYY DA R+P SP E +ILGLNLLRLLVQN
Sbjct: 61 ARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQN 120
Query: 121 RIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLA 180
RIAEFHTELELLSS LE+PCIKHAVELEQSFMEGAYNRVLSA+Q P+ TY YFMDLLA
Sbjct: 121 RIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLLA 180
Query: 181 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKD 240
KT+RDEIAGCSEKAYDY+SI DA QMLLF+SDQELL YV +EHPEWE+K+GFV FQKAK+
Sbjct: 181 KTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELLTYVTDEHPEWEVKEGFVVFQKAKE 240
Query: 241 SAPCKEIPSLQLINQTLSYARELERIV 267
+APCKEIPSLQLINQTLSYARELERIV
Sbjct: 241 TAPCKEIPSLQLINQTLSYARELERIV 267
>sp|Q9FHY0|RP12B_ARATH 26S proteasome non-ATPase regulatory subunit RPN12B OS=Arabidopsis
thaliana GN=RPN12B PE=2 SV=2
Length = 233
Score = 324 bits (830), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 166/267 (62%), Positives = 194/267 (72%), Gaps = 34/267 (12%)
Query: 1 MDPKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTL 60
MDP+L EVSQQF+RFKAA KD++TC+ LLSQLK+
Sbjct: 1 MDPQLMEVSQQFERFKAAFIIKDFDTCSSLLSQLKLF----------------------- 37
Query: 61 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQN 120
D Y ++ L+ + A ++ R+PPSP E +I+GLNLLRLLVQN
Sbjct: 38 --DHYLISLSLNALLLLTCAL---------FFLCTRNRIPPSPQENLIMGLNLLRLLVQN 86
Query: 121 RIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLA 180
RIAEFHTEL LLSS LENPCIKHAVELEQSFMEGAYNRVLSA+Q P+ETY YFMDLLA
Sbjct: 87 RIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGAYNRVLSARQTAPDETYVYFMDLLA 146
Query: 181 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKD 240
KT+RDEIAGCSEKAYD+LSI + +MLLF+SDQ+LL YV EEHPEWE+KDG V FQK ++
Sbjct: 147 KTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQQLLTYVNEEHPEWEVKDGLVVFQKTRE 206
Query: 241 SAPCKEIPSLQLINQTLSYARELERIV 267
+APCKEIPSLQLINQTLSY RELERI+
Sbjct: 207 TAPCKEIPSLQLINQTLSYTRELERIL 233
>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8
OS=Dictyostelium discoideum GN=psmD8-1 PE=3 SV=2
Length = 263
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 167/265 (63%), Gaps = 6/265 (2%)
Query: 5 LTEVSQQFDRFKAAMT-RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIR-ELTLAR 62
+ + Q + FK + D T +L QLK+ T P + + ++ +L LAR
Sbjct: 3 FSSIEQNLNNFKKLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAR 62
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
+I E L S+K++D D+FER F QLK YY D + PS EY I+GLNL+RLL +++
Sbjct: 63 EILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKT 122
Query: 123 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 182
+EFH+E+EL+ L+N IK + +E+S EG+YN+++ ++ VP+E Y F+D+LA +
Sbjct: 123 SEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILADS 182
Query: 183 VRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKDSA 242
++++IA CSEK++ LS+KDA ++LLF + + +Y+KE + W+++ + F +
Sbjct: 183 IKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQGDVIQF--GNNDN 238
Query: 243 PCKEIPSLQLINQTLSYARELERIV 267
EIPSLQLI+QTL YA+ELERIV
Sbjct: 239 QTVEIPSLQLIHQTLHYAKELERIV 263
>sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo
abelii GN=PSMD8 PE=2 SV=2
Length = 289
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 155/267 (58%), Gaps = 8/267 (2%)
Query: 5 LTEVSQQFDRFKAAMTRKDYN--TCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLAR 62
L + +++ K RK N C + L +LK++L LP T ++L LAR
Sbjct: 27 LQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPT--TGTKLTKQQLILAR 84
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL QNR+
Sbjct: 85 DILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRV 144
Query: 123 AEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK 181
AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L
Sbjct: 145 AEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLD 204
Query: 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAKD 240
T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ W + + + F +
Sbjct: 205 TIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRG--WVLGPNNYYSFASQQQ 262
Query: 241 SAPCKEIPSLQLINQTLSYARELERIV 267
IPS +L Q + YAR+LE IV
Sbjct: 263 KPEDTTIPSTELAKQVIEYARQLEMIV 289
>sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus
GN=PSMD8 PE=2 SV=3
Length = 287
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 158/269 (58%), Gaps = 12/269 (4%)
Query: 5 LTEVSQQFDRFKAAMTRKDYN--TCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLAR 62
L + +++ K RK N C + L +LK++L LP T ++L LAR
Sbjct: 25 LQAAAGMYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPT--TGTKLTKQQLILAR 82
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL QNR+
Sbjct: 83 DIQEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRV 142
Query: 123 AEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK 181
AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L
Sbjct: 143 AEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLD 202
Query: 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFF---QKA 238
T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ + + + F QK
Sbjct: 203 TIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGINNYYSFASQQQKP 262
Query: 239 KDSAPCKEIPSLQLINQTLSYARELERIV 267
+D+ IPS +L Q + YAR+LE IV
Sbjct: 263 EDTT----IPSTELAKQVIEYARQLEMIV 287
>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus
GN=Psmd8 PE=1 SV=2
Length = 353
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 16/271 (5%)
Query: 5 LTEVSQQFDRFKAAMTRKDYN--TCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLAR 62
L + +++ K RK+ N C + L +LK++L LP T ++L LAR
Sbjct: 91 LQAAAGMYEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILAR 148
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL QNR+
Sbjct: 149 DILEIGAQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRV 208
Query: 123 AEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK 181
AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L
Sbjct: 209 AEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLD 268
Query: 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFF----Q 236
T+RDEIAGC EKAY+ + +A ++L F++ +++ +Y K+ W + + + F Q
Sbjct: 269 TIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKRG--WVLGPNNYYSFASQQQ 326
Query: 237 KAKDSAPCKEIPSLQLINQTLSYARELERIV 267
K +DS IPS +L Q + YAR+LE IV
Sbjct: 327 KPEDST----IPSTELAKQVIEYARQLEMIV 353
>sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens
GN=PSMD8 PE=1 SV=2
Length = 350
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/267 (40%), Positives = 155/267 (58%), Gaps = 8/267 (2%)
Query: 5 LTEVSQQFDRFKAAMTRKDYN--TCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLAR 62
L + +++ K RK N C + L +LK++L LP T ++L LAR
Sbjct: 88 LQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPT--TGTKLTKQQLILAR 145
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
DI E S+ +D +FER QLK YY D ++LP S + +LGLNLL LL QNR+
Sbjct: 146 DILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRV 205
Query: 123 AEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK 181
AEFHTELE L + ++ N IKH V LEQ MEG+YN+V AK N+P E+Y +F+D+L
Sbjct: 206 AEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLD 265
Query: 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAKD 240
T+RDEIAGC EKAY+ + +A ++L F + +++ +Y K+ W + + + F +
Sbjct: 266 TIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRG--WVLGPNNYYSFASQQQ 323
Query: 241 SAPCKEIPSLQLINQTLSYARELERIV 267
IPS +L Q + YAR+LE IV
Sbjct: 324 KPEDTTIPSTELAKQVIEYARQLEMIV 350
>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1
Length = 270
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 146/266 (54%), Gaps = 29/266 (10%)
Query: 21 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDA 80
RKD+N C + L +LKV L LF T + + + AR+++E+ VL+S++ D ++
Sbjct: 15 RKDWNACKKELLKLKVELAK----QNLFVPTSDK-EKASFARNVFEYGVLVSIQTCDIES 69
Query: 81 FERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTAL--E 138
F R Q+ P+Y D+ L PS ++ GLNLL LL +NRIAEFHT LE + +L
Sbjct: 70 FARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFER 126
Query: 139 NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYL 198
+P ++ + LEQ+ MEGA+++V S ++ + YFM ++ VR+EIA C+EK Y +
Sbjct: 127 DPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEI 186
Query: 199 SIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKDS----------------- 241
+ +A +L + +E E + EE W+++DG ++F K ++
Sbjct: 187 PLSNATSLLYLENTKE-TEKLAEERG-WDIRDGVIYFPKEANALETEDGMLIDEEDELEL 244
Query: 242 APCKEIPSLQLINQTLSYARELERIV 267
P ++ I Q LSY ELE+IV
Sbjct: 245 PPTASKHTISSIRQLLSYTSELEQIV 270
>sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis
elegans GN=rpn-12 PE=1 SV=1
Length = 250
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 128/210 (60%), Gaps = 10/210 (4%)
Query: 61 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQN 120
++D+YE +VLL++ D + F+ Q+ YYT A + S N++++ GL+L+ LL N
Sbjct: 48 SKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPEN---SENKHLMTGLHLMFLLAAN 104
Query: 121 RIAEFHTELELL-SSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL 179
R+++FH LE + N I V +EQS MEGAYN+V+ ++N+P+ Y F+ ++
Sbjct: 105 RLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIM 164
Query: 180 AKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDG--FVFFQK 237
T+R EIA EK++ L+ KDA MLLF +D+++ ++ +E +W + DG +VF +
Sbjct: 165 LDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWHL-DGERYVFEIE 221
Query: 238 AKDSAPCKEIPSLQLINQTLSYARELERIV 267
P + ++++ QTL YA++LE+IV
Sbjct: 222 VAQEKPVN-LDTVRVATQTLFYAKQLEQIV 250
>sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN12 PE=1 SV=3
Length = 274
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 22/280 (7%)
Query: 3 PKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV-LLTGFRSLPPLFEDTPNAIRELTLA 61
P L E+++ A DY C +LL +K+ L+ +P L + +L +
Sbjct: 2 PSLAELTKSL---SIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMIT 58
Query: 62 RDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNR 121
+ I E L S++ + D+FE F QLKPYY +L S + ++ L LL LL QN
Sbjct: 59 KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNN 118
Query: 122 IAEFHTELELLS---STALENPCIKHAVELEQSFMEGAYNRVL----SAKQNVPNETYGY 174
+FH+EL+ L ++ + + ++L++ MEG+Y + S QN+ +
Sbjct: 119 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNIS--EFDS 176
Query: 175 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVF 234
F D+L +RDEIA +E +YD+L + + +L F +++E ++ E + W + + V+
Sbjct: 177 FTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVY 234
Query: 235 F-----QKA--KDSAPCKEIPSLQLINQTLSYARELERIV 267
F +KA +D +E +I + + YA +E IV
Sbjct: 235 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>sp|A4QNR8|LENG8_DANRE Leukocyte receptor cluster member 8 homolog OS=Danio rerio GN=leng8
PE=2 SV=1
Length = 839
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
++YE ++++ D + F + QLK Y D PS N L+ +
Sbjct: 661 EVYETHARIALEKGDHEEFNQCQTQLKALYKDC-----PSDNVGEFTAYRLIYYIFTKNS 715
Query: 123 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 182
+ TEL L++ +PC+ HA+EL ++ G ++R Q P Y +D +
Sbjct: 716 GDLTTELVYLTTELRADPCVAHALELRTAWALGNFHRFFRLYQKAP-RMAAYLIDKFVER 774
Query: 183 VRD 185
R+
Sbjct: 775 ERN 777
>sp|Q96PV6|LENG8_HUMAN Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=2
SV=2
Length = 779
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
++YE ++++ D + F + QLK Y + LP + E+ +L +
Sbjct: 585 EVYETHARIALEKGDHEEFNQCQTQLKSLYAE---NLPGNVGEFTAY--RILYYIFTKNS 639
Query: 123 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 182
+ TEL L+ +PC+ HA+ L ++ G Y+R + P + GY +D A
Sbjct: 640 GDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMS-GYLVDKFADR 698
Query: 183 VR 184
R
Sbjct: 699 ER 700
>sp|Q54EQ1|EIF3K_DICDI Eukaryotic translation initiation factor 3 subunit K
OS=Dictyostelium discoideum GN=eif3K PE=3 SV=2
Length = 246
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 183 VRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQ 236
+R+ I+G Y +SI G++L + +L++Y++ + P W++ D V Q
Sbjct: 167 IRNFISGVLSITYQNISITMLGELLNLSDRTQLVDYIQSKQPTWKISDSTVSLQ 220
>sp|A4XQT3|SECA_PSEMY Protein translocase subunit SecA OS=Pseudomonas mendocina (strain
ymp) GN=secA PE=3 SV=2
Length = 911
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|A6VB75|SECA_PSEA7 Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
PA7) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|Q9LCT3|SECA_PSEAE Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=secA
PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|Q02H37|SECA_PSEAB Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|B7UZI1|SECA_PSEA8 Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain
LESB58) GN=secA PE=3 SV=1
Length = 916
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L NL+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|Q3J799|SECA_NITOC Protein translocase subunit SecA OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=secA PE=3 SV=1
Length = 903
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L NL+R+ RI+ L + A+E+P + A+E Q +EG
Sbjct: 577 PGSTRFYLSLEDNLMRIFASERISGLMQRLGMEEGEAIEHPWVTRAIENAQRKVEG 632
>sp|C1DQA8|SECA_AZOVD Protein translocase subunit SecA OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=secA PE=3 SV=1
Length = 915
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L NL+R+ +R+ F L + + A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDNLMRIFASDRVKNFMKALGMQAGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q1GZ36|SECA_METFK Protein translocase subunit SecA OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=secA PE=3 SV=1
Length = 908
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L LLR+ +R+ L++ A+E+P + A+E Q +
Sbjct: 577 AGRQGDPGSSRFYLSLEDQLLRIFASDRVGAIMERLKMPEGEAIEHPWVTRAIENAQRKV 636
Query: 154 EG 155
EG
Sbjct: 637 EG 638
>sp|A5W8P2|SECA_PSEP1 Protein translocase subunit SecA OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=secA PE=3 SV=2
Length = 911
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|B0KFR8|SECA_PSEPG Protein translocase subunit SecA OS=Pseudomonas putida (strain
GB-1) GN=secA PE=3 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q88N69|SECA_PSEPK Protein translocase subunit SecA OS=Pseudomonas putida (strain
KT2440) GN=secA PE=3 SV=2
Length = 911
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q7NQ59|SECA_CHRVO Protein translocase subunit SecA OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=secA PE=3 SV=1
Length = 903
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L LLR+ +R+A L++ A+E+P + ++E Q +EG
Sbjct: 583 PGSSRFYLCLEDPLLRIFASDRVAAIMDRLKMPEGEAIEHPWVTRSIENAQRKVEG 638
>sp|B1J3I9|SECA_PSEPW Protein translocase subunit SecA OS=Pseudomonas putida (strain
W619) GN=secA PE=3 SV=1
Length = 911
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +EG
Sbjct: 581 PGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAIEHRMVTNAIEKAQRKVEG 636
>sp|Q82W86|SECA_NITEU Protein translocase subunit SecA OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=secA PE=3 SV=1
Length = 909
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L LLR+ +R+A T L++ A+E+P + A+E Q +
Sbjct: 577 AGRQGDPGSSRFYLSLEDPLLRIFSSDRVANIMTRLKMPEGEAIEHPWVTRAIENAQRKV 636
Query: 154 EG 155
E
Sbjct: 637 EA 638
>sp|Q0AH18|SECA_NITEC Protein translocase subunit SecA OS=Nitrosomonas eutropha (strain
C91) GN=secA PE=3 SV=1
Length = 909
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 154
P S Y+ L LLR+ +R+A T L++ A+E+P + A+E Q +E
Sbjct: 583 PGSSRFYLSLEDPLLRIFSSDRVANIMTRLKMPEGEAIEHPWVTRAIENAQRKVE 637
>sp|A1S2G7|SECA_SHEAM Protein translocase subunit SecA OS=Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B) GN=secA PE=3 SV=1
Length = 908
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 154
P S Y+ + NL+R+ R+A +L + A+E+P + A+E Q +E
Sbjct: 581 PGSSRFYLSMEDNLMRIFASERVANMMKKLGMEEGEAIEHPWVTRAIENAQRKVE 635
>sp|Q32NW2|LENG8_XENLA Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis
GN=leng8 PE=2 SV=1
Length = 800
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 63 DIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRI 122
++YE ++++ D + F + QLK Y + L + E+ +L +
Sbjct: 622 EVYETHARIALEKGDHEEFNQCQAQLKSLYAE---NLAGNVGEFTAY--RILYYIFTKNS 676
Query: 123 AEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKT 182
+ TEL L+ + C+ HA+ L +++ Y+R + P + GY +D A+
Sbjct: 677 GDLTTELAHLTKELKADACVAHALSLREAWALSNYHRFFKLYRQAPRMS-GYLIDKFAER 735
Query: 183 VR 184
R
Sbjct: 736 ER 737
>sp|A4VPA3|SECA_PSEU5 Protein translocase subunit SecA OS=Pseudomonas stutzeri (strain
A1501) GN=secA PE=3 SV=2
Length = 913
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 95 AGKRLPPSPNE-YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM 153
AG++ P + Y+ L +L+R+ +R+ F L + S A+E+ + +A+E Q +
Sbjct: 575 AGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKALGMESGEAIEHRMVTNAIEKAQRKV 634
Query: 154 EG 155
EG
Sbjct: 635 EG 636
>sp|P09848|LPH_HUMAN Lactase-phlorizin hydrolase OS=Homo sapiens GN=LCT PE=1 SV=3
Length = 1927
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 13 DRFKAAMTRKDYNTCTQLLSQLKVLLTGF-RSLPPLFEDTPNAIRELTLARDIYEHAVLL 71
D K+ RK T ++ + L G R LPP + P+ +R T ++ A ++
Sbjct: 824 DSSKSRTPRKSAYFFTSIIEKNGFLTKGAKRLLPPNTVNLPSKVRAFTFPSEVPSKAKVV 883
Query: 72 SVKVEDQDAFERDFF 86
K Q FERD F
Sbjct: 884 WEKFSSQPKFERDLF 898
>sp|P47521|Y279_MYCGE Uncharacterized protein MG279 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG279 PE=4 SV=1
Length = 218
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 120 NRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
N+I+E++TE++ +S +N +K E+E+S EG
Sbjct: 47 NKISEYNTEIKKISQNIFQNNLVKTLSEVEKSLNEG 82
>sp|Q83F06|SECA_COXBU Protein translocase subunit SecA OS=Coxiella burnetii (strain RSA
493 / Nine Mile phase I) GN=secA PE=3 SV=1
Length = 913
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ + NLLR+ R++ L + +E+P I A+E Q +EG
Sbjct: 586 PGSSQFYLSMEDNLLRIFAAERMSNMMRRLGVKEDDVIEHPWITRAIEKAQRRVEG 641
>sp|Q2SA01|SECA_HAHCH Protein translocase subunit SecA OS=Hahella chejuensis (strain KCTC
2396) GN=secA PE=3 SV=1
Length = 908
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEG 155
P S Y+ L NL+R+ +R+ L + A+E+ + +A+E Q +EG
Sbjct: 580 PGSTRFYLSLEDNLMRIFASDRVKNIMQALGMQKGEAIEHRMVSNAIEKAQRKVEG 635
>sp|A3CM30|GLMM_STRSV Phosphoglucosamine mutase OS=Streptococcus sanguinis (strain SK36)
GN=glmM PE=3 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 86 FQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHA 145
QL + GK+L E I L+ + V+N + A+E P IK
Sbjct: 346 VQLTKVMQETGKKLSELAAEVTIYPQKLVNIRVENS----------MKDKAMEVPAIKTV 395
Query: 146 VELEQSFMEGAYNRVLSAKQNVP----------NETYGYFMDLLAKTVRDEIA 188
+E ++ M G ++ P +E Y++D +A VRDEI
Sbjct: 396 IERMEAEMAGNGRILVRPSGTEPLLRVMAEAPTDEEVNYYVDTIANVVRDEIG 448
>sp|Q2Y647|SECA1_NITMU Protein translocase subunit SecA 1 OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=secA1 PE=3 SV=1
Length = 917
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 100 PPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFME 154
P S Y+ L LLR+ +R+A L + A+E+P + A+E Q +E
Sbjct: 583 PGSSRFYLSLEDALLRIFASDRVASIMQRLNMPQGEAIEHPWVTRAIENAQRKVE 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,283,652
Number of Sequences: 539616
Number of extensions: 3757027
Number of successful extensions: 10350
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10296
Number of HSP's gapped (non-prelim): 43
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)