Query 024461
Match_columns 267
No_of_seqs 135 out of 283
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3151 26S proteasome regulat 100.0 2.3E-81 4.9E-86 553.0 24.4 257 9-267 2-260 (260)
2 PF10075 PCI_Csn8: COP9 signal 100.0 2.1E-28 4.6E-33 203.6 9.8 130 104-236 2-133 (143)
3 PF03399 SAC3_GANP: SAC3/GANP/ 99.9 1.1E-27 2.3E-32 208.0 11.3 147 61-209 55-204 (204)
4 KOG1861 Leucine permease trans 99.9 2.4E-27 5.1E-32 226.5 13.8 171 59-237 345-517 (540)
5 KOG4414 COP9 signalosome, subu 99.5 3.3E-13 7.2E-18 113.0 10.9 133 98-237 33-171 (197)
6 KOG3252 Uncharacterized conser 97.6 0.00054 1.2E-08 59.9 9.6 130 106-239 62-192 (217)
7 KOG1860 Nuclear protein export 97.5 0.0018 3.8E-08 67.9 13.2 168 60-232 215-419 (927)
8 COG5079 SAC3 Nuclear protein e 97.3 0.0077 1.7E-07 59.9 14.2 161 61-229 181-377 (646)
9 PF01399 PCI: PCI domain; Int 97.1 0.012 2.5E-07 44.9 11.1 49 171-220 34-82 (105)
10 KOG2908 26S proteasome regulat 95.0 2.6 5.6E-05 40.5 17.4 197 20-237 127-339 (380)
11 smart00088 PINT motif in prote 94.9 0.14 3E-06 38.4 7.1 62 176-238 3-70 (88)
12 smart00753 PAM PCI/PINT associ 94.9 0.14 3E-06 38.4 7.1 62 176-238 3-70 (88)
13 KOG2582 COP9 signalosome, subu 88.9 2.5 5.3E-05 41.0 8.7 75 179-258 299-376 (422)
14 KOG2581 26S proteasome regulat 73.0 20 0.00044 35.5 8.4 78 141-219 317-399 (493)
15 KOG1464 COP9 signalosome, subu 67.3 49 0.0011 31.5 9.4 117 100-220 264-386 (440)
16 KOG0687 26S proteasome regulat 60.5 1.7E+02 0.0037 28.4 14.0 165 71-240 150-364 (393)
17 PLN00156 histone H2AX; Provisi 53.6 46 0.00099 28.0 6.1 81 140-233 26-112 (139)
18 COG2522 Predicted transcriptio 52.9 40 0.00087 27.6 5.5 45 176-225 3-48 (119)
19 PF03374 ANT: Phage antirepres 52.0 32 0.00068 26.8 4.7 33 194-229 21-53 (111)
20 cd02677 MIT_SNX15 MIT: domain 51.7 52 0.0011 24.4 5.6 47 141-194 9-63 (75)
21 COG5187 RPN7 26S proteasome re 49.0 2.5E+02 0.0055 27.0 13.9 102 138-240 266-378 (412)
22 PF07743 HSCB_C: HSCB C-termin 46.9 35 0.00077 24.9 4.1 30 7-36 39-68 (78)
23 KOG3389 NADH:ubiquinone oxidor 45.0 8.6 0.00019 32.7 0.5 32 196-229 118-149 (178)
24 KOG1076 Translation initiation 40.3 2.1E+02 0.0045 30.5 9.5 111 124-237 633-763 (843)
25 PF14559 TPR_19: Tetratricopep 39.9 1.1E+02 0.0025 20.6 5.6 59 80-145 6-64 (68)
26 PF10098 DUF2336: Uncharacteri 38.0 88 0.0019 28.1 6.0 91 111-209 166-260 (262)
27 PF02203 TarH: Tar ligand bind 37.0 1.2E+02 0.0027 24.6 6.3 72 24-95 84-160 (171)
28 PF12833 HTH_18: Helix-turn-he 36.8 1.3E+02 0.0028 21.5 5.7 59 155-220 10-68 (81)
29 PF09976 TPR_21: Tetratricopep 36.4 2.2E+02 0.0048 22.7 11.3 113 59-181 9-125 (145)
30 PF05687 DUF822: Plant protein 33.4 32 0.00069 29.2 2.1 49 179-236 17-71 (150)
31 KOG2495 NADH-dehydrogenase (ub 30.9 48 0.001 33.2 3.2 64 166-229 174-251 (491)
32 PF04800 ETC_C1_NDUFA4: ETC co 30.6 26 0.00056 27.9 1.1 23 205-229 51-73 (101)
33 PF11467 LEDGF: Lens epitheliu 30.4 66 0.0014 25.7 3.4 31 6-36 2-34 (106)
34 KOG3250 COP9 signalosome, subu 30.4 87 0.0019 28.6 4.5 26 138-163 117-142 (258)
35 PLN00153 histone H2A; Provisio 28.9 2.2E+02 0.0048 23.6 6.3 82 140-234 21-108 (129)
36 PLN00157 histone H2A; Provisio 28.5 2.9E+02 0.0062 23.1 6.9 81 140-233 23-109 (132)
37 PTZ00017 histone H2A; Provisio 27.3 2.4E+02 0.0053 23.6 6.3 81 141-234 25-111 (134)
38 TIGR01764 excise DNA binding d 25.9 1.7E+02 0.0036 18.3 4.3 38 198-237 2-40 (49)
39 PF06627 DUF1153: Protein of u 24.4 2.2E+02 0.0047 22.3 5.2 39 182-221 34-72 (90)
40 PF09339 HTH_IclR: IclR helix- 24.0 1.6E+02 0.0034 19.6 4.0 44 186-230 7-51 (52)
41 PF10668 Phage_terminase: Phag 23.5 1.8E+02 0.0038 21.0 4.2 31 196-229 21-51 (60)
42 PTZ00252 histone H2A; Provisio 23.4 2E+02 0.0042 24.1 5.1 80 141-233 23-110 (134)
43 PF03683 UPF0175: Uncharacteri 22.9 1.8E+02 0.004 21.3 4.5 38 179-220 17-56 (76)
44 PF12728 HTH_17: Helix-turn-he 22.7 2.3E+02 0.005 18.5 5.0 22 198-220 2-23 (51)
45 smart00414 H2A Histone 2A. 22.6 2.7E+02 0.0059 22.1 5.6 81 141-234 7-93 (106)
46 PF12840 HTH_20: Helix-turn-he 21.4 2.8E+02 0.0061 19.0 5.0 43 175-219 3-45 (61)
47 KOG2753 Uncharacterized conser 21.0 2.9E+02 0.0062 26.9 6.3 66 153-220 251-316 (378)
48 PHA01082 putative transcriptio 20.8 1.8E+02 0.0038 24.2 4.2 74 193-267 25-133 (133)
49 PF04212 MIT: MIT (microtubule 20.4 3.1E+02 0.0067 19.3 5.2 48 140-194 7-62 (69)
50 PRK11032 hypothetical protein; 20.1 5.6E+02 0.012 22.0 8.2 74 5-104 5-78 (160)
No 1
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-81 Score=552.95 Aligned_cols=257 Identities=54% Similarity=0.803 Sum_probs=242.8
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhh
Q 024461 9 SQQFDRFKAAMTRK-DYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQ 87 (267)
Q Consensus 9 ~~l~~~L~~~~~~~-~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~q 87 (267)
.+++++|+++|..+ |+.+|+++|.+||++|++.+++||+.+.++.++++|.+||+|||+||++||.+.|+++|+|||+|
T Consensus 2 s~l~~~l~a~w~k~~d~~aC~klL~~lKveL~K~n~l~~~~~~~~~~k~~l~~aR~ilEi~vl~SI~t~D~~sFerY~~Q 81 (260)
T KOG3151|consen 2 SELYKNLKAEWAKRPDLVACEKLLDQLKVELTKNNLLPPDLNISDIDKQQLIIARDILEIGVLLSILTKDFESFERYMNQ 81 (260)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 57899999999966 99999999999999999999999987777788999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhh-cCchhhhhHHHHHHHHhcchHHHHHhhhc
Q 024461 88 LKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTAL-ENPCIKHAVELEQSFMEGAYNRVLSAKQN 166 (267)
Q Consensus 88 Lk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~-~~~~I~~~i~leq~LmeG~Y~kv~~~~~~ 166 (267)
|+|||+|+...+|+|+++++++||||||||||||++||||+||+||...+ .||||+|||+||||+|||+|||||.++++
T Consensus 82 lk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~s 161 (260)
T KOG3151|consen 82 LKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNRIAEFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQS 161 (260)
T ss_pred hcchhcccccccCcchhhhHHHHHHHHHHHHhccHHHHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988 77999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceeeCCeEEEecCCCCCCCCC
Q 024461 167 VPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAKDSAPCKE 246 (267)
Q Consensus 167 ~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~~g~i~f~~~~~~~~~~~ 246 (267)
+|+++|.+|||+|++|||+|||.|+||||+.||+++|++||+|++++++..|+ .+|+|.++.+.++++...+.+...+
T Consensus 162 ~p~~~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~~e~~~~~--~~r~W~l~~~~~~~~~~~~~~p~~~ 239 (260)
T KOG3151|consen 162 IPSEEYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNNDKELKKFA--TERQWPLDEKGVFSFASKETAPYEE 239 (260)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHH--HhcCCcccccccccchhhccCchhc
Confidence 99999999999999999999999999999999999999999999999999997 4689999866666665444455567
Q ss_pred CChHHHHHHHHhHHHHhhhcC
Q 024461 247 IPSLQLINQTLSYARELERIV 267 (267)
Q Consensus 247 ips~~li~~~L~YA~eLE~IV 267 (267)
+|+.++++|+|+||+|||+||
T Consensus 240 ~ps~~la~qtlsYar~LE~Iv 260 (260)
T KOG3151|consen 240 IPSTELAEQTLSYARELEMIV 260 (260)
T ss_pred cCcHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998
No 2
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=99.95 E-value=2.1e-28 Score=203.60 Aligned_cols=130 Identities=28% Similarity=0.447 Sum_probs=104.5
Q ss_pred chhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhc-CchhhhhHHHHHHHHhcchHHHHHh-hhcCCCccHHHHHHHHHH
Q 024461 104 NEYMILGLNLLRLLVQNRIAEFHTELELLSSTALE-NPCIKHAVELEQSFMEGAYNRVLSA-KQNVPNETYGYFMDLLAK 181 (267)
Q Consensus 104 ~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~-~~~I~~~i~leq~LmeG~Y~kv~~~-~~~~P~~~~~~fm~~L~~ 181 (267)
....+.|++|+.+|.+|++++||.+|++||.+++. ||+|+.+|.|+|+||+|+|+++|.. +.+.|++.|..||..|.+
T Consensus 2 ~~~~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (143)
T PF10075_consen 2 LNPEIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFED 81 (143)
T ss_dssp --HHHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHH
T ss_pred CchhHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 35789999999999999999999999999999995 7999999999999999999999995 445788999999999999
Q ss_pred HHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceeeCCeEEEe
Q 024461 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQ 236 (267)
Q Consensus 182 tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~~g~i~f~ 236 (267)
+||++|+.||++||++|++++++++||++ ++++.+|++ ++||+++++.++|+
T Consensus 82 ~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~--~~gW~~d~~~~~~~ 133 (143)
T PF10075_consen 82 TIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFIK--SRGWTVDGDGVLFP 133 (143)
T ss_dssp HHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHH--HHT-EE-----EE-
T ss_pred HHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHH--HcCCEECCCccEEe
Confidence 99999999999999999999999999999 999999995 46999995555555
No 3
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=99.95 E-value=1.1e-27 Score=208.04 Aligned_cols=147 Identities=35% Similarity=0.554 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCc
Q 024461 61 ARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENP 140 (267)
Q Consensus 61 ar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~ 140 (267)
+++|||.+|+++|..+|.++|++|++||+.+|.+. ...++++++.+++|+|||++|++|+.++||..++.+|.+..+||
T Consensus 55 ~i~v~E~~ar~~i~~~d~~qf~~c~~~L~~lY~~~-~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~ 133 (204)
T PF03399_consen 55 AIKVYERIARFAIESGDLEQFNQCLSQLKELYDDL-RDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSP 133 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCH
Confidence 99999999999999999999999999999999996 33577899999999999999999999999999999999988999
Q ss_pred hhhhhHHHHHHHHhcchHHHHHhh--hcCCCccHHHHHHHHHHHHHHHHHHhHHHccCC-CCHHHHHHhhCC
Q 024461 141 CIKHAVELEQSFMEGAYNRVLSAK--QNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDY-LSIKDAGQMLLF 209 (267)
Q Consensus 141 ~I~~~i~leq~LmeG~Y~kv~~~~--~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~s-l~l~~a~~lL~f 209 (267)
.|+++++|++++++|||.++|+.. .++| ..++.+|+.++++||..++.++++||.+ +|++.++++|+|
T Consensus 134 ~i~~al~l~~a~~~gny~~ff~l~~~~~~~-~l~~~l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 134 YIQFALELCRALMEGNYVRFFRLYRSKSAP-YLFACLMERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HHHHHHHHHHHH--TTHHHHHHHHT-TTS--HHHHHHHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 999999999999999999999987 5544 5899999999999999999999999998 999999999987
No 4
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=99.95 E-value=2.4e-27 Score=226.55 Aligned_cols=171 Identities=19% Similarity=0.345 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhc
Q 024461 59 TLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALE 138 (267)
Q Consensus 59 ~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~ 138 (267)
.++++|||+||++|+++||.++|++|++|||.+|. .++|+. ..+|+++.|||.+-..+..+..++|..|+.++++
T Consensus 345 eFTveVYEtHARIALEkGD~~EfNQCQtQLk~LY~---egipg~--~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ke 419 (540)
T KOG1861|consen 345 EFTVEVYETHARIALEKGDLEEFNQCQTQLKALYS---EGIPGA--YLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKE 419 (540)
T ss_pred ceeeeeehhhhHHHHhcCCHHHHHHHHHHHHHHHc---cCCCCc--hhhHHHHHHHHHHHhcCchHHHHHHHhccHhhcc
Confidence 35789999999999999999999999999999995 347765 7999999999977666666999999999999999
Q ss_pred CchhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccC-CCCHHHHHHhhCCCCHHHHHH
Q 024461 139 NPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD-YLSIKDAGQMLLFTSDQELLE 217 (267)
Q Consensus 139 ~~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~-sl~l~~a~~lL~f~s~~e~~~ 217 (267)
|++|.|+++|+.++..|||+|+|+.+.++|. +-+++||.|+++.|..+...|.|||+ +||++.+++.|.|++-++|..
T Consensus 420 d~~V~hAL~vR~A~~~GNY~kFFrLY~~AP~-M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~~~e~c~~ 498 (540)
T KOG1861|consen 420 DEAVAHALEVRSAVTLGNYHKFFRLYLTAPN-MSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFDSMEDCVN 498 (540)
T ss_pred CHHHHHHHHHHHHHHhccHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhchHHHHHH
Confidence 9999999999999999999999999999997 78999999999999999999999999 999999999999999999999
Q ss_pred HHhhcCCCceee-CCeEEEec
Q 024461 218 YVKEEHPEWEMK-DGFVFFQK 237 (267)
Q Consensus 218 f~~~~~rgW~v~-~g~i~f~~ 237 (267)
|. ++.+|+-+ .|..+...
T Consensus 499 ~l--~~~~~~~~~~g~~~~~~ 517 (540)
T KOG1861|consen 499 FL--NEQNLTYDSLGPQILDK 517 (540)
T ss_pred HH--hccCccccccCCccccc
Confidence 97 46889987 56555544
No 5
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.48 E-value=3.3e-13 Score=113.04 Aligned_cols=133 Identities=11% Similarity=0.126 Sum_probs=117.4
Q ss_pred CCCCCc--chhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhh-cCchhhhhHHHHHHHHhcchHHHHHhhhcCC-CccHH
Q 024461 98 RLPPSP--NEYMILGLNLLRLLVQNRIAEFHTELELLSSTAL-ENPCIKHAVELEQSFMEGAYNRVLSAKQNVP-NETYG 173 (267)
Q Consensus 98 ~l~~S~--~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~-~~~~I~~~i~leq~LmeG~Y~kv~~~~~~~P-~~~~~ 173 (267)
|+...+ -+...++.|++ -|+-.+...+|+|||+.++ .+|++.-+|.++|.+|..+|..||.+.+.-. |++..
T Consensus 33 GIa~~~dw~Ya~~L~~Yf~----~dD~dnARfLWKRIP~AIKe~k~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak 108 (197)
T KOG4414|consen 33 GIATHDDWPYAIHLAGYFL----HDDCDNARFLWKRIPPAIKEAKPELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAK 108 (197)
T ss_pred CccCCCcchHHHHHHHHHH----hccchhHHHHHHhCCHHHhhcCchhhhhhhhhHHHHhcccchHHHHHhhhcchHHHH
Confidence 555444 67778888888 8999999999999999999 8999999999999999999999999876555 88999
Q ss_pred HHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee-CCeEE-Eec
Q 024461 174 YFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVF-FQK 237 (267)
Q Consensus 174 ~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~-~g~i~-f~~ 237 (267)
.+|..|-|..|.+....+-.||+||..++.+..||+. +++...++. +.||+++ ..++. .++
T Consensus 109 ~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~-~ddAtk~il--EnGWqaDaasqMasl~k 171 (197)
T KOG4414|consen 109 DIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLP-EDDATKGIL--ENGWQADAASQMASLKK 171 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHH--HcccchhhHHHHhhccc
Confidence 9999999999999999999999999999999999999 888888884 5799998 55555 444
No 6
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00054 Score=59.91 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 024461 106 YMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRD 185 (267)
Q Consensus 106 ~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~ 185 (267)
..+++-=||.-|..=--+||-...=.||...+.+..++..+.|...|-.|+|..+|.....-| .++..+ -=|-|.||.
T Consensus 62 t~itaqILlKaL~~lP~tDF~l~kcli~~~~~~ee~~r~ii~L~~~LEt~~Fq~FW~~~~~N~-~mle~i-tGFedsvr~ 139 (217)
T KOG3252|consen 62 TTITAQILLKALTNLPHTDFTLAKCLIDERVQMEEPFRSIIDLGDYLETCRFQQFWQEADENR-DMLEGI-TGFEDSVRK 139 (217)
T ss_pred hHHHHHHHHHHHhcCCCcchhHHHHhcCHHHhcccchhHHHhHHHHHhhchHHHHhhhhccch-HHhcCC-CcHHHHHHH
Confidence 446666667777777788999999999998889999999999999999999999998543212 122221 226899999
Q ss_pred HHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee-CCeEEEecCC
Q 024461 186 EIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQKAK 239 (267)
Q Consensus 186 eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~-~g~i~f~~~~ 239 (267)
=+...+.-+|.+|+-.-.+++||-.+..++..+++ ..||..+ .|.|+.+..+
T Consensus 140 yachvv~iTyQkI~k~lLaellG~~sDs~le~~~~--~~GW~a~e~G~ifv~~qE 192 (217)
T KOG3252|consen 140 YACHVVGITYQKIDKWLLAELLGGLSDSQLEVWMT--KYGWIADESGQIFVASQE 192 (217)
T ss_pred HHHHheechHhhchHHHHHHhhCcccHHHHHHHHH--HccceecCCceEEEeccc
Confidence 99999999999999999999999999999999984 5799999 7766666643
No 7
>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0018 Score=67.88 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhhc----cCh-HHH---------HHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHH
Q 024461 60 LARDIYEHAVLLSVKV----EDQ-DAF---------ERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEF 125 (267)
Q Consensus 60 lar~vlEi~al~si~~----~D~-~~F---------~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~ef 125 (267)
.|..++|-.|++=|.. .|. +.| .-|..-|..+|.|.+.+=-+.++..++-|||+|. +-|+- +.
T Consensus 215 ~Av~llE~i~RfhI~~~h~Lce~~~~Fda~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl--~Lgd~-~~ 291 (927)
T KOG1860|consen 215 EAVELLERIARFHILFRHRLCEEPEQFDAQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLL--SLGDP-QV 291 (927)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--hcCCc-hH
Confidence 3556666665544422 233 344 3444556778999866666789999999999984 44443 44
Q ss_pred HHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHH-----------------hhhcCC-C-ccHHHHHHHHHHHHHHH
Q 024461 126 HTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLS-----------------AKQNVP-N-ETYGYFMDLLAKTVRDE 186 (267)
Q Consensus 126 h~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~-----------------~~~~~P-~-~~~~~fm~~L~~tiR~e 186 (267)
-.....+|+++..++.+++++.+.++.-.|||-.+|+ .....| . ..-..++..+..-||.-
T Consensus 292 ~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~f~~ir~~ 371 (927)
T KOG1860|consen 292 VRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELFFPDIRWA 371 (927)
T ss_pred HHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999863 122334 1 13466788889999999
Q ss_pred HHHhHHHccC----CCCHHHHHHhhCCCCHHHHHHHHhhcCCCceeeCCe
Q 024461 187 IAGCSEKAYD----YLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGF 232 (267)
Q Consensus 187 ia~~iekAY~----sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~~g~ 232 (267)
+...++.+|. .+|+.....+|.|+++++...+. +.+|-+++.|.
T Consensus 372 al~~~~~~~~~~~~~vp~~~l~~~l~f~~~e~~~~~~--~~y~Leis~~~ 419 (927)
T KOG1860|consen 372 ALRAMSHAYNSKHVPVPLGKLDRILLFDGEEELKVVC--NYYGLEISVDD 419 (927)
T ss_pred HHHHHHHHHhccCCCcchhHHHHHHhcCChhhhHhhh--hheeeEeeccc
Confidence 9999999995 79999999999999999999998 47898887343
No 8
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=97.26 E-value=0.0077 Score=59.87 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhh----ccChHHHHHHHh--hhh-------hhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHH
Q 024461 61 ARDIYEHAVLLSVK----VEDQDAFERDFF--QLK-------PYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHT 127 (267)
Q Consensus 61 ar~vlEi~al~si~----~~D~~~F~r~~~--qLk-------~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~ 127 (267)
|+++.|-.|++-|- ..|...|.+=+. ||+ .+|.+.+.+-...+|..++-++-+|-=| +| ...-.
T Consensus 181 AV~c~EriaRfhIl~lh~L~~~p~Fs~qqeleQL~ksL~sL~elYdd~r~~~~~cpneaEFraYaiL~sl--gD-p~yv~ 257 (646)
T COG5079 181 AVECHERIARFHILFLHLLHDHPHFSKQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYAILASL--GD-PRYVA 257 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--CC-chhhh
Confidence 56677777765543 245566655443 544 6899988777889999999999877333 32 23445
Q ss_pred HHHhccHhhhcCchhhhhHHHHHHHHhcchH---------------HHHHhhhcCCCccHHHHHHHHHH----HHHHHHH
Q 024461 128 ELELLSSTALENPCIKHAVELEQSFMEGAYN---------------RVLSAKQNVPNETYGYFMDLLAK----TVRDEIA 188 (267)
Q Consensus 128 ~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~---------------kv~~~~~~~P~~~~~~fm~~L~~----tiR~eia 188 (267)
-...+|..+..++-++-++.+.|-...|+|. ++|+..+ ++...+||..|++ .||.-++
T Consensus 258 ~iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rnteac~nlytrFfkl~q---Spsv~~lmg~lle~h~~sir~~aL 334 (646)
T COG5079 258 GIQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQ---SPSVQYLMGCLLEKHNISIRGGAL 334 (646)
T ss_pred ccccCCccccccchHHHHHHHHHHhhccCeeeccccchhhhhHHHHHHHHHHh---CccHHHHHHHHHHHhhHHHHHHHH
Confidence 5678888888999999999999988888754 4444433 3457888887766 5787777
Q ss_pred HhHHHcc----CCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee
Q 024461 189 GCSEKAY----DYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 189 ~~iekAY----~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
..++++| ..+|.-+...+|.|++.++..+|++ -.|-++.
T Consensus 335 kAm~k~~~sahk~ipf~~l~~il~f~~~~e~~efck--yy~lei~ 377 (646)
T COG5079 335 KAMEKEIESAHKNIPFVDLSGILDFEEKGEGEEFCK--YYGLEIR 377 (646)
T ss_pred HHHHHHHHHhhcCCCeehhhhhccccccchhHHHhh--hcceeee
Confidence 6655555 6899999999999999999999984 4677775
No 9
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=97.08 E-value=0.012 Score=44.94 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 171 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 171 ~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
.....++.+...+|......+.+.|++++++.++++++++ .++++.++.
T Consensus 34 ~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~-~~~vE~~l~ 82 (105)
T PF01399_consen 34 FLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLS-EEEVESILI 82 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccc-hHHHHHHHH
Confidence 3445778899999999999999999999999999999999 799988884
No 10
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=2.6 Score=40.49 Aligned_cols=197 Identities=20% Similarity=0.224 Sum_probs=119.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhc-CCC
Q 024461 20 TRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDA-GKR 98 (267)
Q Consensus 20 ~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~-~~~ 98 (267)
+.+|+..|+++|..+|-.|-+.+..||. +.-..|=.++.+-=..+|+++|-|+- -.|-... .+.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~~~------------Vh~~fY~lssqYyk~~~d~a~yYr~~---L~YL~~~d~~~ 191 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVTSN------------VHSSFYSLSSQYYKKIGDFASYYRHA---LLYLGCSDIDD 191 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCChh------------hhhhHHHHHHHHHHHHHhHHHHHHHH---HHHhccccccc
Confidence 4689999999999999988877666552 22234444555555556666654433 2232211 456
Q ss_pred CCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHHhhh---cCCCccHHHH
Q 024461 99 LPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQ---NVPNETYGYF 175 (267)
Q Consensus 99 l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~~~~---~~P~~~~~~f 175 (267)
+|.|+....-.-|-+--||..| +=+|-.+|-.=--+-..+-...+-.++=.++-.|+..++.+..+ ..| ..+--
T Consensus 192 l~~se~~~lA~~L~~aALLGe~-iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p--~L~~~ 268 (380)
T KOG2908|consen 192 LSESEKQDLAFDLSLAALLGEN-IYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQP--DLASN 268 (380)
T ss_pred cCHHHHHHHHHHHHHHHHhccc-cccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCc--hHHHH
Confidence 7888743333333334445543 44565444322112235666777888889999999999988654 334 34444
Q ss_pred HHHHHHHHHHHHHHhHHHccC------CCCHHHHHHhhCCCCHHHHHHHH-----hhcCCCceee-CCeEEEec
Q 024461 176 MDLLAKTVRDEIAGCSEKAYD------YLSIKDAGQMLLFTSDQELLEYV-----KEEHPEWEMK-DGFVFFQK 237 (267)
Q Consensus 176 m~~L~~tiR~eia~~iekAY~------sl~l~~a~~lL~f~s~~e~~~f~-----~~~~rgW~v~-~g~i~f~~ 237 (267)
-+.|.+.|| +.+.||-.|. ++|++++++...++ .++++-.+ .+-=+||-=+ +|.+++.-
T Consensus 269 e~~L~qKI~--LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip-~~eVE~LVMKAlslgLikG~Idqv~~~v~~sw 339 (380)
T KOG2908|consen 269 EDFLLQKIR--LLALIEITFSRPANERTLSFKEIAEATKIP-NKEVELLVMKALSLGLIKGSIDQVEGVVYMSW 339 (380)
T ss_pred HHHHHHHHH--HHHHHHHHhcCcchhccccHHHHHHHhCCC-HHHHHHHHHHHHhccceeeeecccccEEEEec
Confidence 455666665 4577887774 69999999999998 45544333 1112355433 67777765
No 11
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=94.87 E-value=0.14 Score=38.39 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecC
Q 024461 176 MDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 176 m~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~ 238 (267)
.+.+...+|........+.|++|+++++++.++++ .++++.++.. ..-..+++ +|.++|...
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00088 3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCC
Confidence 46688999999999999999999999999999998 5578887742 23467887 677777653
No 12
>smart00753 PAM PCI/PINT associated module.
Probab=94.87 E-value=0.14 Score=38.39 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecC
Q 024461 176 MDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 176 m~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~ 238 (267)
.+.+...+|........+.|++|+++++++.++++ .++++.++.. ..-..+++ +|.++|...
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~ 70 (88)
T smart00753 3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCC
Confidence 46688999999999999999999999999999998 5578887742 23467887 677777653
No 13
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.87 E-value=2.5 Score=41.05 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh---cCCCceeeCCeEEEecCCCCCCCCCCChHHHHHH
Q 024461 179 LAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE---EHPEWEMKDGFVFFQKAKDSAPCKEIPSLQLINQ 255 (267)
Q Consensus 179 L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~---~~rgW~v~~g~i~f~~~~~~~~~~~ips~~li~~ 255 (267)
.+...-.+-.....|.|.||++++++++..+.+.+|+.+++-+ ..+-..+-||.|+|...+ .+.+|.++++|
T Consensus 299 av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iNG~v~f~~n~-----e~~~SpeM~~n 373 (422)
T KOG2582|consen 299 AVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASINGMVFFTDNP-----EKYNSPEMHEN 373 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEecceEEEecCc-----ccCCCHHHHhh
Confidence 3334444445566789999999999999999999999999853 234455458888887644 23455566664
Q ss_pred HHh
Q 024461 256 TLS 258 (267)
Q Consensus 256 ~L~ 258 (267)
-+.
T Consensus 374 k~~ 376 (422)
T KOG2582|consen 374 KID 376 (422)
T ss_pred HHH
Confidence 333
No 14
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=20 Score=35.48 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHhcchHHHHHhhhc----CCC-ccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHH
Q 024461 141 CIKHAVELEQSFMEGAYNRVLSAKQN----VPN-ETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQEL 215 (267)
Q Consensus 141 ~I~~~i~leq~LmeG~Y~kv~~~~~~----~P~-~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~ 215 (267)
.+.+=..|-++.-.|+-.|+=.-..+ .-. ..|..+ -.|-..|=..-...|.-+|+.||+.|+|+-|+++|++++
T Consensus 317 sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~Li-vRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~ 395 (493)
T KOG2581|consen 317 SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLI-VRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDA 395 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhH
Confidence 55566677777777777666332111 111 112221 223333333445788899999999999999999998866
Q ss_pred HHHH
Q 024461 216 LEYV 219 (267)
Q Consensus 216 ~~f~ 219 (267)
+-.+
T Consensus 396 EyiV 399 (493)
T KOG2581|consen 396 EYIV 399 (493)
T ss_pred HHHH
Confidence 5554
No 15
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.30 E-value=49 Score=31.49 Aligned_cols=117 Identities=16% Similarity=0.224 Sum_probs=75.4
Q ss_pred CCCcchhhHHHHHHHH-HHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchH---HHHHhhh-cC-CCccHH
Q 024461 100 PPSPNEYMILGLNLLR-LLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYN---RVLSAKQ-NV-PNETYG 173 (267)
Q Consensus 100 ~~S~~~~~llgL~LL~-LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~---kv~~~~~-~~-P~~~~~ 173 (267)
.+|+++..-+-+-.|- .|-...|.-|.+.= -=| -++||+|-..-.+=++--.++-. ++..+.. ++ ..|-..
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iNPFDsQE-AKP--yKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGINPFDSQE-AKP--YKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcccc-cCC--CCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHH
Confidence 3566665544433222 45566666665431 111 24788887777776666555533 3444322 21 123344
Q ss_pred HHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 174 YFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 174 ~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
.-|+-|+..||-.+.--.-|-|..|.+..+++-|..+ +.++...+.
T Consensus 341 eh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~-~~dV~~LLV 386 (440)
T KOG1464|consen 341 EHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVP-EADVESLLV 386 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCC-HHHHHHHHH
Confidence 5567799999999998888999999999999999998 888887763
No 16
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.50 E-value=1.7e+02 Score=28.44 Aligned_cols=165 Identities=14% Similarity=0.126 Sum_probs=103.1
Q ss_pred HHhhccChHHHHHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHH-HHhccH---------------
Q 024461 71 LSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTE-LELLSS--------------- 134 (267)
Q Consensus 71 ~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~-LE~l~~--------------- 134 (267)
+.+--.|..=-++.....++.|..+ ...++++.+-.++=+|.+|-.+..++-.+ |+.+|.
T Consensus 150 lglfy~D~~lV~~~iekak~liE~G----gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 150 LGLFYLDHDLVTESIEKAKSLIEEG----GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhC----CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 3334466677777777777777654 24567777777777777777666665543 233331
Q ss_pred ------------h----hhcCchhh-------hhHHHHHHHHhcchHHHHHhhhcC------CCccHHHHHHHHHHHHHH
Q 024461 135 ------------T----ALENPCIK-------HAVELEQSFMEGAYNRVLSAKQNV------PNETYGYFMDLLAKTVRD 185 (267)
Q Consensus 135 ------------~----~~~~~~I~-------~~i~leq~LmeG~Y~kv~~~~~~~------P~~~~~~fm~~L~~tiR~ 185 (267)
+ +...|.|. ...++=-+|-+-+|..+|.....+ +.-..+++.+.++--+|.
T Consensus 226 tv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~ 305 (393)
T KOG0687|consen 226 TVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRR 305 (393)
T ss_pred HHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHH
Confidence 1 11344433 333444567789999998844211 222233344444667788
Q ss_pred HHHHhHHHccCCCCHHHHHHhhCCC---CHHHHHHHHhhcCCCcee-e-CCeEEEecCCC
Q 024461 186 EIAGCSEKAYDYLSIKDAGQMLLFT---SDQELLEYVKEEHPEWEM-K-DGFVFFQKAKD 240 (267)
Q Consensus 186 eia~~iekAY~sl~l~~a~~lL~f~---s~~e~~~f~~~~~rgW~v-~-~g~i~f~~~~~ 240 (267)
.+-+-.--||++++++..|+-.|.+ =+.|+..|+.+ .|=|-. | =+.|+..++++
T Consensus 306 rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~rFI~~-grL~ckIDrVnGVVEtNrpD 364 (393)
T KOG0687|consen 306 RVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGRFIAA-GRLHCKIDRVNGVVETNRPD 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHHhhcc-CceeeeeecccceeecCCcc
Confidence 8877777799999999999999986 23589999964 566654 4 24566666553
No 17
>PLN00156 histone H2AX; Provisional
Probab=53.64 E-value=46 Score=28.02 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=50.8
Q ss_pred chhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHc---cC--CCCHHHHHHhhCCCCHH
Q 024461 140 PCIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKA---YD--YLSIKDAGQMLLFTSDQ 213 (267)
Q Consensus 140 ~~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekA---Y~--sl~l~~a~~lL~f~s~~ 213 (267)
.-++||| .++++|.+|+|.+ +-....| .|+...++-+=-||..+...+ -. .|.-..+ .|...|.+
T Consensus 26 AgL~FPVgRi~R~Lk~g~ya~--RVga~Ap-----VYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi--~lAIrnDe 96 (139)
T PLN00156 26 AGLQFPVGRIARFLKAGKYAE--RVGAGAP-----VYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHI--QLAVRNDE 96 (139)
T ss_pred cCcccchHHHHHHHhcCChhh--ccCCccH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHH--HhhccCcH
Confidence 3578888 5999999999997 3333333 355555554444454433332 22 4544544 35567889
Q ss_pred HHHHHHhhcCCCceeeCCeE
Q 024461 214 ELLEYVKEEHPEWEMKDGFV 233 (267)
Q Consensus 214 e~~~f~~~~~rgW~v~~g~i 233 (267)
|+..++ .+|++..|.|
T Consensus 97 EL~~Ll----~~vTIa~GGV 112 (139)
T PLN00156 97 ELSKLL----GSVTIAAGGV 112 (139)
T ss_pred HHHHHH----CCCccCCCcc
Confidence 999997 3899986554
No 18
>COG2522 Predicted transcriptional regulator [General function prediction only]
Probab=52.94 E-value=40 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHh-HHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCC
Q 024461 176 MDLLAKTVRDEIAGC-SEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPE 225 (267)
Q Consensus 176 m~~L~~tiR~eia~~-iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rg 225 (267)
.+.++-+||-.+|.- +++ -+|...+|+|||++ ...+.+|++. .||
T Consensus 3 ~~~vlPaiRa~lA~~L~ee---G~Sq~~iA~LLGlt-qaAVS~Yls~-krg 48 (119)
T COG2522 3 VEEVLPAIRALLAKELIEE---GLSQYRIAKLLGLT-QAAVSQYLSG-KRG 48 (119)
T ss_pred hHHHHHHHHHHHHHHHHHc---CCcHHHHHHHhCCC-HHHHHHHHcc-CCc
Confidence 456788999999954 444 78899999999998 8999999964 455
No 19
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=52.05 E-value=32 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.450 Sum_probs=28.8
Q ss_pred ccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee
Q 024461 194 AYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 194 AY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
+=.++++.++|++|++. +..+.+|+ ++.||-.+
T Consensus 21 ~~~~~ti~~~AK~L~i~-~~~l~~~L--r~~g~l~~ 53 (111)
T PF03374_consen 21 SDGLYTIREAAKLLGIG-RNKLFQWL--REKGWLYR 53 (111)
T ss_pred CCCCccHHHHHHHhCCC-HHHHHHHH--HhCCceEE
Confidence 44789999999999999 99999999 45788887
No 20
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=51.67 E-value=52 Score=24.44 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHH--------HHHHHHHHHHHHhHHHc
Q 024461 141 CIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMD--------LLAKTVRDEIAGCSEKA 194 (267)
Q Consensus 141 ~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~--------~L~~tiR~eia~~iekA 194 (267)
.|+.+++.++. |+|...+..+.+ -..+||. .-.+++|.+++.++.+|
T Consensus 9 l~~~Ave~d~~---~~y~eA~~~Y~~----~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 9 LIRLALEKEEE---GDYEAAFEFYRA----GVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHH---hhHHHHHHHHHH----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 45666777766 999999998766 3466666 35789999999999887
No 21
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.99 E-value=2.5e+02 Score=27.01 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred cCchhhhhHHHHHHHHhcchHHHHHhh------hcCCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCC
Q 024461 138 ENPCIKHAVELEQSFMEGAYNRVLSAK------QNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTS 211 (267)
Q Consensus 138 ~~~~I~~~i~leq~LmeG~Y~kv~~~~------~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s 211 (267)
++.-++-.+++--.|-+-+|...|.-. .=.|....+-+.|.++--+|.++-+-.--||+.++++..|.-.+.+-
T Consensus 266 ~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgVSV 345 (412)
T COG5187 266 SSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFGVSV 345 (412)
T ss_pred chhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCccH
Confidence 556677778888899999999777621 12234445667777888899998877777999999999999999861
Q ss_pred ---HHHHHHHHhhcCCCceeeC--CeEEEecCCC
Q 024461 212 ---DQELLEYVKEEHPEWEMKD--GFVFFQKAKD 240 (267)
Q Consensus 212 ---~~e~~~f~~~~~rgW~v~~--g~i~f~~~~~ 240 (267)
+.++-+|+- ..+-|-+-| +.|++.++++
T Consensus 346 ~yvdrDLg~FIp-~~~LncvIDRvnGvVetnrpd 378 (412)
T COG5187 346 EYVDRDLGEFIP-EGRLNCVIDRVNGVVETNRPD 378 (412)
T ss_pred HHHhhhHHhhCC-CCceeeeeecccceEeccCcc
Confidence 247888985 456776642 4566666553
No 22
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=46.94 E-value=35 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024461 7 EVSQQFDRFKAAMTRKDYNTCTQLLSQLKV 36 (267)
Q Consensus 7 ~~~~l~~~L~~~~~~~~~~~~~~lL~~lKi 36 (267)
....+.++|..+|+++|++.+...+.+||=
T Consensus 39 ~~~~~~~~l~~~f~~~d~~~A~~~~~kLky 68 (78)
T PF07743_consen 39 RIKELIKELAEAFDAKDWEEAKEALRKLKY 68 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 355667777778888899999999888864
No 23
>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]
Probab=44.97 E-value=8.6 Score=32.69 Aligned_cols=32 Identities=16% Similarity=0.442 Sum_probs=27.1
Q ss_pred CCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee
Q 024461 196 DYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 196 ~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
.-=|++++---|.|++++++..|+ +..||..+
T Consensus 118 TaDPlsNvgm~L~F~tkEdA~sFa--EkngW~yd 149 (178)
T KOG3389|consen 118 TADPLSNVGMALAFDTKEDAKSFA--EKNGWDYD 149 (178)
T ss_pred cCCcccccceeeeeccHHHHHHHH--HHcCCccc
Confidence 345788888889999999999997 46899986
No 24
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=40.27 E-value=2.1e+02 Score=30.46 Aligned_cols=111 Identities=16% Similarity=0.352 Sum_probs=75.0
Q ss_pred HHHHHHHhccHhhh-cCch--hhhhHHHHHHHHhcchHHHHHhhhc-------CCCccHHHHHHHHHHHHHHHHHHhH--
Q 024461 124 EFHTELELLSSTAL-ENPC--IKHAVELEQSFMEGAYNRVLSAKQN-------VPNETYGYFMDLLAKTVRDEIAGCS-- 191 (267)
Q Consensus 124 efh~~LE~l~~~~~-~~~~--I~~~i~leq~LmeG~Y~kv~~~~~~-------~P~~~~~~fm~~L~~tiR~eia~~i-- 191 (267)
.||-.||....... .=|+ =-|++.--++|..|++.+-+.-.-+ .| .-.-+.++|.++|++|.+..=
T Consensus 633 ~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfp--n~d~V~~Ml~~rIqEEsLRTYLf 710 (843)
T KOG1076|consen 633 SFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFP--NADTVLDMLTERIQEESLRTYLF 710 (843)
T ss_pred HHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665543322 2222 3477888899999999876662211 23 346688999999999988643
Q ss_pred --HHccCCCCHHHHHHhhCCCCHHHHHHHHhh----c--CCCceeeCCeEEEec
Q 024461 192 --EKAYDYLSIKDAGQMLLFTSDQELLEYVKE----E--HPEWEMKDGFVFFQK 237 (267)
Q Consensus 192 --ekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~--~rgW~v~~g~i~f~~ 237 (267)
...|.|+|+...|.|.-++ +..|...++. . .-.|.=..+.|+|..
T Consensus 711 tYss~Y~SvSl~~LA~mFdLp-~~~VhsIiSkmiineEl~AslDqpt~~iv~hr 763 (843)
T KOG1076|consen 711 TYSSVYDSVSLAKLADMFDLP-EPKVHSIISKMIINEELHASLDQPTQCIVMHR 763 (843)
T ss_pred HhhhhhhhccHHHHHHHhCCC-chhHHHHHHHHHHHHHhhhccCCCcceEEEee
Confidence 3456899999999999998 8888887742 2 235554356777776
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=39.95 E-value=1.1e+02 Score=20.57 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhh
Q 024461 80 AFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHA 145 (267)
Q Consensus 80 ~F~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~ 145 (267)
.|+.....++...... |. ...+.-..--.++.+|+..+....|+++.....+||.+...
T Consensus 6 ~~~~A~~~~~~~l~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 6 DYDEAIELLEKALQRN----PD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHHHT----TT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3445555555555443 22 23333334444677999999999999998766666666543
No 26
>PF10098 DUF2336: Uncharacterized protein conserved in bacteria (DUF2336); InterPro: IPR019285 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.03 E-value=88 Score=28.05 Aligned_cols=91 Identities=25% Similarity=0.253 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHHhhh--cCCCccHHHHHHHHHHHHHH--H
Q 024461 111 LNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQ--NVPNETYGYFMDLLAKTVRD--E 186 (267)
Q Consensus 111 L~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~~~~--~~P~~~~~~fm~~L~~tiR~--e 186 (267)
=-|++.+.+|+...|...|..+..- -+-.+++.|..++...+.-..+ .+|...|.-|...+....+. .
T Consensus 166 ~lL~~a~~~g~~~~f~aaLA~lsgl--------~~~~v~~il~d~~~~~L~~l~kaaGL~~~~~~~~~~~~~~~~~~~~~ 237 (262)
T PF10098_consen 166 ALLLRAACSGRLAFFAAALAELSGL--------PPARVRRILADGGGEALAALCKAAGLPWATFPAFLAALAPWRRISRG 237 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHCc--------CHHHHHHHHhCCCchHHHHHHHHcCCCHHHHHHHHHHHhhhcccCcc
Confidence 3456778899999999999887531 1346889999999999877533 66777788887776655442 2
Q ss_pred HHHhHHHccCCCCHHHHHHhhCC
Q 024461 187 IAGCSEKAYDYLSIKDAGQMLLF 209 (267)
Q Consensus 187 ia~~iekAY~sl~l~~a~~lL~f 209 (267)
-..-....|..|+.+.+..+|.|
T Consensus 238 ~~~~~~~~y~~L~~~~A~~~L~~ 260 (262)
T PF10098_consen 238 DLEEALALYDRLSPDAAQRVLRF 260 (262)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23446679999999999888753
No 27
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=37.02 E-value=1.2e+02 Score=24.57 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHH-HHHH---HHHHhhccChHHHHHH-Hhhhhhhhhhc
Q 024461 24 YNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDI-YEHA---VLLSVKVEDQDAFERD-FFQLKPYYTDA 95 (267)
Q Consensus 24 ~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~v-lEi~---al~si~~~D~~~F~r~-~~qLk~~Y~~~ 95 (267)
.+.+.+.+.+.+-.+-.+-..|+.......-.+++.-.++. ++.+ ++-+++.+|.++|.+. ..++.|.|..+
T Consensus 84 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~~~~~~~~~~~~~~~~~ 160 (171)
T PF02203_consen 84 LARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAAFMQLPNEKIQPLFDAF 160 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHHHHHHHHHhcchhHHHH
Confidence 56777777777777777666665332222334566666666 6555 6778999999999888 66888888754
No 28
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=36.82 E-value=1.3e+02 Score=21.48 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=34.9
Q ss_pred cchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 155 GAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 155 G~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
....++|......+. .. ++...|-+.|.-.-..+...|+.+++...||.|...+....+
T Consensus 10 ~~l~~~f~~~~g~s~--~~-----~~~~~R~~~a~~~L~~~~~~~i~~ia~~~Gf~~~~~f~~~fk 68 (81)
T PF12833_consen 10 RYLSRIFKKETGMSF--KQ-----YLRELRLQRAKELLRQNTDLSIAEIAEECGFSSQSHFSRAFK 68 (81)
T ss_dssp HHHHHHHHHHHSS-H--HH-----HHHHHHHHHHHHHHHHHTT--HHHHHHHTT-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCH--HH-----HHHHHHHHHHHHHHHHhhcccHHHHHHHcCCCCHHHHHHHHH
Confidence 344566665444331 12 345556555544333478999999999999999988877664
No 29
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.42 E-value=2.2e+02 Score=22.72 Aligned_cols=113 Identities=24% Similarity=0.305 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCCCCCCcchhhHHHHHHHH-HHhcCCHHHHHHHHHhccHhhh
Q 024461 59 TLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLPPSPNEYMILGLNLLR-LLVQNRIAEFHTELELLSSTAL 137 (267)
Q Consensus 59 ~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~-LLsqn~i~efh~~LE~l~~~~~ 137 (267)
.-+..+|+-... ++..+|...-...+.+|..-|. .+ .+...-.|.|=. +..+|+..+....|+.+....
T Consensus 9 ~~a~~~y~~~~~-~~~~~~~~~~~~~~~~l~~~~~-------~s-~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~- 78 (145)
T PF09976_consen 9 EQASALYEQALQ-ALQAGDPAKAEAAAEQLAKDYP-------SS-PYAALAALQLAKAAYEQGDYDEAKAALEKALANA- 78 (145)
T ss_pred HHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCC-------CC-hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 345666665443 3468888887666666655442 22 233344444433 456899999999999987654
Q ss_pred cCchhhhhHHH---HHHHHhcchHHHHHhhhcCCCccHHHHHHHHHH
Q 024461 138 ENPCIKHAVEL---EQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAK 181 (267)
Q Consensus 138 ~~~~I~~~i~l---eq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~ 181 (267)
.|+.++....+ .-.+-.|.|.+.......+|.+.|..+...+.+
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLG 125 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHH
Confidence 56666655554 445679999999998877777777776554433
No 30
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=33.39 E-value=32 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhHHH---ccC--CCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee-CCeEEEe
Q 024461 179 LAKTVRDEIAGCSEK---AYD--YLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK-DGFVFFQ 236 (267)
Q Consensus 179 L~~tiR~eia~~iek---AY~--sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~-~g~i~f~ 236 (267)
.-++=|..||+-|-. +|- .||- .-| ..||..-+. .+-||.|+ ||..|-.
T Consensus 17 ~RERrRRAIaakIfaGLR~~Gny~Lp~-------~aD-~NeVLkALc-~eAGw~Ve~DGTtyr~ 71 (150)
T PF05687_consen 17 RRERRRRAIAAKIFAGLRAHGNYKLPK-------HAD-NNEVLKALC-REAGWTVEPDGTTYRK 71 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC-------cCC-HHHHHHHHH-HhCCEEEccCCCeecc
Confidence 456677777776643 232 2221 123 455554432 57899999 8877753
No 31
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=30.87 E-value=48 Score=33.16 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=49.8
Q ss_pred cCC-CccHHHHHHHH--HHHHHHHHHHhHHHccC-CCCHHHHHHhhCC----------CCHHHHHHHHhhcCCCceee
Q 024461 166 NVP-NETYGYFMDLL--AKTVRDEIAGCSEKAYD-YLSIKDAGQMLLF----------TSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 166 ~~P-~~~~~~fm~~L--~~tiR~eia~~iekAY~-sl~l~~a~~lL~f----------~s~~e~~~f~~~~~rgW~v~ 229 (267)
+.| -.++++|.... ...||.+++.|+|+|=. .++-.+-+++|+| +=..|+.+|+-+.-+.|-=+
T Consensus 174 gipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~ 251 (491)
T KOG2495|consen 174 GIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPE 251 (491)
T ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhc
Confidence 445 56899998876 56799999999999876 8999999999987 23469999986555566443
No 32
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=30.58 E-value=26 Score=27.86 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=18.0
Q ss_pred HhhCCCCHHHHHHHHhhcCCCceee
Q 024461 205 QMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 205 ~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
--|.|+|.+++.+||. ..||...
T Consensus 51 v~l~F~skE~Ai~yae--r~G~~Y~ 73 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAE--RNGWDYE 73 (101)
T ss_dssp CEEEESSHHHHHHHHH--HCT-EEE
T ss_pred eEeeeCCHHHHHHHHH--HcCCeEE
Confidence 4578999999999984 5799873
No 33
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=30.39 E-value=66 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Q 024461 6 TEVSQQFDRFKAAM--TRKDYNTCTQLLSQLKV 36 (267)
Q Consensus 6 ~~~~~l~~~L~~~~--~~~~~~~~~~lL~~lKi 36 (267)
+.+.++..+++.+. +++|..+|.+.|.+|+-
T Consensus 2 ~~L~~l~~~Ik~~L~~~~~Dv~kcL~~LdeL~~ 34 (106)
T PF11467_consen 2 RRLQELHSEIKSSLKVDNPDVKKCLKALDELKS 34 (106)
T ss_dssp HHHHHHHHHHHHTCETTEE-HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Confidence 35788889999875 68999999999999876
No 34
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.39 E-value=87 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.8
Q ss_pred cCchhhhhHHHHHHHHhcchHHHHHh
Q 024461 138 ENPCIKHAVELEQSFMEGAYNRVLSA 163 (267)
Q Consensus 138 ~~~~I~~~i~leq~LmeG~Y~kv~~~ 163 (267)
..+..+..-+||-++||-=|+.|.+.
T Consensus 117 ~~l~~~nvrelEd~iieamya~IlrG 142 (258)
T KOG3250|consen 117 RLLPSRNVRELEDLIIEAMYADILRG 142 (258)
T ss_pred hhccCCchhHHHHHHHHHHHHHHHHh
Confidence 56667778899999999999999873
No 35
>PLN00153 histone H2A; Provisional
Probab=28.90 E-value=2.2e+02 Score=23.63 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=50.9
Q ss_pred chhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHc---c--CCCCHHHHHHhhCCCCHH
Q 024461 140 PCIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKA---Y--DYLSIKDAGQMLLFTSDQ 213 (267)
Q Consensus 140 ~~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekA---Y--~sl~l~~a~~lL~f~s~~ 213 (267)
.-++||| .++++|.+|+|.+ +-....| .|+...++-+=-||..+...+ - ..|.-..+ .|...|.+
T Consensus 21 agL~FpVgRi~R~Lr~g~~a~--Rvga~A~-----VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi--~lAI~nDe 91 (129)
T PLN00153 21 AGLQFPVGRIARYLKKGKYAE--RIGAGAP-----VYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHI--QLAIRNDE 91 (129)
T ss_pred cCcccchHHHHHHHhcCchhh--ccCCCch-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHH--HhhccCcH
Confidence 3577777 5999999999986 3333334 344444444444444433333 2 24554554 35567889
Q ss_pred HHHHHHhhcCCCceeeCCeEE
Q 024461 214 ELLEYVKEEHPEWEMKDGFVF 234 (267)
Q Consensus 214 e~~~f~~~~~rgW~v~~g~i~ 234 (267)
|+..++ .||++..|.++
T Consensus 92 EL~~Ll----~~vTIa~GGV~ 108 (129)
T PLN00153 92 ELGKLL----GEVTIASGGVL 108 (129)
T ss_pred HHHHHH----CCCccCCCccC
Confidence 999997 38999866554
No 36
>PLN00157 histone H2A; Provisional
Probab=28.48 E-value=2.9e+02 Score=23.08 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=50.6
Q ss_pred chhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHc---cC--CCCHHHHHHhhCCCCHH
Q 024461 140 PCIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKA---YD--YLSIKDAGQMLLFTSDQ 213 (267)
Q Consensus 140 ~~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekA---Y~--sl~l~~a~~lL~f~s~~ 213 (267)
.-++||| .++++|.+|+|.+ +-...+| .|+...++-+=-||..+...+ -. .|+-..+ .|...|.+
T Consensus 23 agL~FPVgRi~R~Lk~g~~a~--RIg~~A~-----VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi--~lAI~nDe 93 (132)
T PLN00157 23 AGLQFPVGRIARYLKAGKYAT--RVGAGAP-----VYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHI--QLAVRNDE 93 (132)
T ss_pred cCcccchHHHHHHHhcCchhh--hcCCCcH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHH--hhcccCcH
Confidence 3577777 5999999999986 3333334 355555555555555444333 21 4444444 35667889
Q ss_pred HHHHHHhhcCCCceeeCCeE
Q 024461 214 ELLEYVKEEHPEWEMKDGFV 233 (267)
Q Consensus 214 e~~~f~~~~~rgW~v~~g~i 233 (267)
|+.+++ .||++..|.|
T Consensus 94 EL~~Ll----~~vtIa~GGV 109 (132)
T PLN00157 94 ELSKLL----GGVTIAAGGV 109 (132)
T ss_pred HHHHHH----cCceecCCcc
Confidence 999997 3899986655
No 37
>PTZ00017 histone H2A; Provisional
Probab=27.33 E-value=2.4e+02 Score=23.56 Aligned_cols=81 Identities=14% Similarity=0.283 Sum_probs=48.4
Q ss_pred hhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHH---ccC--CCCHHHHHHhhCCCCHHH
Q 024461 141 CIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEK---AYD--YLSIKDAGQMLLFTSDQE 214 (267)
Q Consensus 141 ~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iek---AY~--sl~l~~a~~lL~f~s~~e 214 (267)
-++||| .++++|.+|+|.+ +-...+| .|+...++-+=.||..+... --. .|.-.++ .|.+.|.+|
T Consensus 25 gL~FPVgRi~R~Lk~g~~a~--RV~a~A~-----VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi--~lAI~nDeE 95 (134)
T PTZ00017 25 GLQFPVGRVHRYLKKGRYAK--RVGAGAP-----VYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHI--QLAIRNDEE 95 (134)
T ss_pred CcccchHHHHHHHhccchhc--cccccch-----hhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHH--HhhccCcHH
Confidence 467776 5899999999997 2233344 23444444444444433322 222 4444444 355678899
Q ss_pred HHHHHhhcCCCceeeCCeEE
Q 024461 215 LLEYVKEEHPEWEMKDGFVF 234 (267)
Q Consensus 215 ~~~f~~~~~rgW~v~~g~i~ 234 (267)
+..++ .++++..|.|+
T Consensus 96 L~~Ll----~~vtIa~GGV~ 111 (134)
T PTZ00017 96 LNKLL----AGVTIASGGVL 111 (134)
T ss_pred HHHHH----cCCcccCCccC
Confidence 99997 38899866553
No 38
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=25.87 E-value=1.7e+02 Score=18.33 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHhhcC-CCceeeCCeEEEec
Q 024461 198 LSIKDAGQMLLFTSDQELLEYVKEEH-PEWEMKDGFVFFQK 237 (267)
Q Consensus 198 l~l~~a~~lL~f~s~~e~~~f~~~~~-rgW~v~~g~i~f~~ 237 (267)
+++.+++++|+++ ...+..++++.. ....+ ++...|+.
T Consensus 2 lt~~e~a~~lgis-~~ti~~~~~~g~i~~~~~-g~~~~~~~ 40 (49)
T TIGR01764 2 LTVEEAAEYLGVS-KDTVYRLIHEGELPAYRV-GRHYRIPR 40 (49)
T ss_pred CCHHHHHHHHCCC-HHHHHHHHHcCCCCeEEe-CCeEEEeH
Confidence 6889999999997 899999985311 12333 45555544
No 39
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=24.44 E-value=2.2e+02 Score=22.25 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh
Q 024461 182 TVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE 221 (267)
Q Consensus 182 tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~ 221 (267)
++|.+++--..-.|--|+.++|++.-+++ ++|+..|..+
T Consensus 34 va~RKAaVV~aV~~Glis~~EA~~rY~Ls-~eEf~~W~~a 72 (90)
T PF06627_consen 34 VARRKAAVVRAVRGGLISVEEACRRYGLS-EEEFESWQRA 72 (90)
T ss_dssp -HHHHHHHHHHHHCTTS-HHHHHHCTTSS-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHH
Confidence 46777777777788999999999999998 8999999754
No 40
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=23.99 E-value=1.6e+02 Score=19.65 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=31.9
Q ss_pred HHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceeeC
Q 024461 186 EIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMKD 230 (267)
Q Consensus 186 eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~~ 230 (267)
.|..++..+=..++++++++.++++ ...+..+++. .+.||...|
T Consensus 7 ~iL~~l~~~~~~~t~~eia~~~gl~-~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 7 RILEALAESGGPLTLSEIARALGLP-KSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHCHHCTBSCEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCcCeecC
Confidence 4677787777789999999999998 6666655532 246887654
No 41
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=23.54 E-value=1.8e+02 Score=20.96 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=25.4
Q ss_pred CCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceee
Q 024461 196 DYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 196 ~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
-.+++.++|+.|+.+ +..+..+= ..-.|.-.
T Consensus 21 g~i~lkdIA~~Lgvs-~~tIr~WK--~~dkW~~~ 51 (60)
T PF10668_consen 21 GKIKLKDIAEKLGVS-ESTIRKWK--SRDKWDEK 51 (60)
T ss_pred CCccHHHHHHHHCCC-HHHHHHHh--hhcchhhH
Confidence 489999999999998 89999883 34578765
No 42
>PTZ00252 histone H2A; Provisional
Probab=23.43 E-value=2e+02 Score=24.15 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=52.2
Q ss_pred hhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHcc-------CCCCHHHHHHhhCCCCH
Q 024461 141 CIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAY-------DYLSIKDAGQMLLFTSD 212 (267)
Q Consensus 141 ~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY-------~sl~l~~a~~lL~f~s~ 212 (267)
-++||| .++++|.+|+|.+ +-... -.+|+...++-+=-||..+...+- ..|.-..+ .|...|.
T Consensus 23 GL~FPVgRi~R~Lr~g~ya~--RIga~-----ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi--~lAIrND 93 (134)
T PTZ00252 23 GLIFPVGRVGSLLRRGQYAR--RIGAS-----GAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTV--TLAVRHD 93 (134)
T ss_pred CccCchHHHHHHHHcCCccc--ccCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHH--HhhccCh
Confidence 477887 6999999999985 22222 345666666666666666555442 24555554 4566788
Q ss_pred HHHHHHHhhcCCCceeeCCeE
Q 024461 213 QELLEYVKEEHPEWEMKDGFV 233 (267)
Q Consensus 213 ~e~~~f~~~~~rgW~v~~g~i 233 (267)
+|+.++++ |=++..|.|
T Consensus 94 eEL~~Ll~----~vTIa~GGV 110 (134)
T PTZ00252 94 DDLGSLLK----NVTLSRGGV 110 (134)
T ss_pred HHHHHHHc----CCccCCCcc
Confidence 99999973 446654444
No 43
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=22.92 E-value=1.8e+02 Score=21.34 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHccC--CCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 179 LAKTVRDEIAGCSEKAYD--YLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 179 L~~tiR~eia~~iekAY~--sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
+...+|..+|- +-|. .||+..|++++|++ .-++.++++
T Consensus 17 ~~~~~r~~~Ai---~lY~~g~iS~gkAAelag~s-~~eF~~~L~ 56 (76)
T PF03683_consen 17 FEQELREELAI---KLYEEGKISLGKAAELAGMS-RWEFLELLK 56 (76)
T ss_pred HHHHHHHHHHH---HHHHcCCCCHHHHHHHhCCC-HHHHHHHHH
Confidence 34556666653 3565 99999999999996 999999985
No 44
>PF12728 HTH_17: Helix-turn-helix domain
Probab=22.70 E-value=2.3e+02 Score=18.49 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=19.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHh
Q 024461 198 LSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 198 l~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
++.++++++|+.+ ...+..+++
T Consensus 2 lt~~e~a~~l~is-~~tv~~~~~ 23 (51)
T PF12728_consen 2 LTVKEAAELLGIS-RSTVYRWIR 23 (51)
T ss_pred CCHHHHHHHHCcC-HHHHHHHHH
Confidence 6789999999997 888999985
No 45
>smart00414 H2A Histone 2A.
Probab=22.55 E-value=2.7e+02 Score=22.15 Aligned_cols=81 Identities=12% Similarity=0.241 Sum_probs=48.2
Q ss_pred hhhhhH-HHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHH---ccC--CCCHHHHHHhhCCCCHHH
Q 024461 141 CIKHAV-ELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEK---AYD--YLSIKDAGQMLLFTSDQE 214 (267)
Q Consensus 141 ~I~~~i-~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iek---AY~--sl~l~~a~~lL~f~s~~e 214 (267)
-++||| .++++|.+|+|.+= -...+ ..|+...++-+=.||...... --. .|+-.++ .+...|.+|
T Consensus 7 gL~fPVgRi~r~Lk~~~~~~R--v~~~A-----~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi--~lAi~nD~E 77 (106)
T smart00414 7 GLQFPVGRIHRLLRKGTYAKR--VGAGA-----PVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHL--QLAIRNDEE 77 (106)
T ss_pred CccCchHHHHHHHHcCccccc--ccccc-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--hhhccCCHH
Confidence 456676 68999999999872 22233 334444444444444433222 122 3444444 355677899
Q ss_pred HHHHHhhcCCCceeeCCeEE
Q 024461 215 LLEYVKEEHPEWEMKDGFVF 234 (267)
Q Consensus 215 ~~~f~~~~~rgW~v~~g~i~ 234 (267)
+.+.. .|+++.+|.+.
T Consensus 78 L~~L~----~~vti~~ggv~ 93 (106)
T smart00414 78 LNKLL----KGVTIAQGGVL 93 (106)
T ss_pred HHHHH----cCcccCCCccC
Confidence 99886 37888866654
No 46
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=21.36 E-value=2.8e+02 Score=18.97 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHH
Q 024461 175 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYV 219 (267)
Q Consensus 175 fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~ 219 (267)
+.+.|.+..|.+|...+ ..-...+.+++++.++++ ...+..-+
T Consensus 3 i~~aL~~p~R~~Il~~L-~~~~~~t~~ela~~l~~~-~~t~s~hL 45 (61)
T PF12840_consen 3 IFKALSDPTRLRILRLL-ASNGPMTVSELAEELGIS-QSTVSYHL 45 (61)
T ss_dssp HHHHHTSHHHHHHHHHH-HHCSTBEHHHHHHHHTS--HHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH-hcCCCCCHHHHHHHHCCC-HHHHHHHH
Confidence 56778899999999999 677899999999999998 55555554
No 47
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=21.01 E-value=2.9e+02 Score=26.88 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=46.2
Q ss_pred HhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 153 MEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 153 meG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
|..+|-+++...... ..+++.-=+..+-.+|-=....+...-..||.+++++-|..+ ++|++.|+-
T Consensus 251 ~L~aYveF~~~N~~F-vqs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~-edeVE~fVI 316 (378)
T KOG2753|consen 251 KLDAYVEFVAANSGF-VQSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQIN-EDEVELFVI 316 (378)
T ss_pred chHHHHHHHHhChHH-HHHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccC-HHHHHHHHH
Confidence 445666665543211 234555556788888876665555466699999999999998 899999984
No 48
>PHA01082 putative transcription regulator
Probab=20.78 E-value=1.8e+02 Score=24.18 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=45.9
Q ss_pred HccC-CCCHHHHHHhhCCCCHHHHHHHHhh-----------------------cCCCceeeCCeEEEecCCCCCC-----
Q 024461 193 KAYD-YLSIKDAGQMLLFTSDQELLEYVKE-----------------------EHPEWEMKDGFVFFQKAKDSAP----- 243 (267)
Q Consensus 193 kAY~-sl~l~~a~~lL~f~s~~e~~~f~~~-----------------------~~rgW~v~~g~i~f~~~~~~~~----- 243 (267)
+-|+ -||+.++|++- |+|...+.+|=+. .=.||.+..|+..+|...-..+
T Consensus 25 RefeCgLsveeaa~LC-fKsVrtVk~WD~G~~IPPeCkRLMr~~~gRELs~~e~W~~FrM~~~rLelPTGq~VtpQqILt 103 (133)
T PHA01082 25 REFECGLSVEEAAKLC-FKTVSEVKQWDAGEKIPPICKRLMRWHSRRELYYGDEWWGFRMEGGRLIFPTGDRVAPQQLLA 103 (133)
T ss_pred hhhccCccHHHHHHHH-HHhHHHHhhccCCCcCChHHHHHHHHhcccccccchhhhhhhhccCceecCCcCcccHHHHHH
Confidence 3444 56666666655 4556666666321 1138899889999998541110
Q ss_pred ------CCCCChHHHHHHHHhHHHHhhhcC
Q 024461 244 ------CKEIPSLQLINQTLSYARELERIV 267 (267)
Q Consensus 244 ------~~~ips~~li~~~L~YA~eLE~IV 267 (267)
-..-+-.....+-|.||+-|-+|.
T Consensus 104 GiALLEIgAe~D~~~~~kiLKyAR~L~~i~ 133 (133)
T PHA01082 104 AIAILQIQAPDDAMTRSKLLKYARAMARIK 133 (133)
T ss_pred HhHhhhccCcchHHHHHHHHHHHHHHHhcC
Confidence 112345567788999999997764
No 49
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.45 E-value=3.1e+02 Score=19.25 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=32.8
Q ss_pred chhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHH--------HHHHHHHHHhHHHc
Q 024461 140 PCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLA--------KTVRDEIAGCSEKA 194 (267)
Q Consensus 140 ~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~--------~tiR~eia~~iekA 194 (267)
++++-+++.++ .|+|...+..+.+ -..+||..+. +.+|.++-..+.+|
T Consensus 7 ~~~~~Av~~D~---~g~~~~A~~~Y~~----ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 7 ELIKKAVEADE---AGNYEEALELYKE----AIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHH---TTSHHHHHHHHHH----HHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHH----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 56777888888 8999999987754 2345555443 33677776666654
No 50
>PRK11032 hypothetical protein; Provisional
Probab=20.10 E-value=5.6e+02 Score=21.96 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Q 024461 5 LTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERD 84 (267)
Q Consensus 5 ~~~~~~l~~~L~~~~~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~ 84 (267)
.+.=.+++.+++..+.... .+...++.+.|-.+...+-| ..+|+.+.... -+.|+++|-+
T Consensus 5 ~~~Y~~ll~~v~~~l~~~~-~~l~~~ve~a~~~~~~~~el---------T~dEl~lv~~y---------lkRDL~ef~~- 64 (160)
T PRK11032 5 AQYYRELVASLTERLRNGE-RDIDALVESARKRVDAAGEL---------TRDEVDLITRA---------VRRDLEEFAR- 64 (160)
T ss_pred HHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHhc---------CHHHHHHHHHH---------HHHHHHHHHH-
Confidence 3444555666665554332 46777888888877765544 13455544432 3788999887
Q ss_pred HhhhhhhhhhcCCCCCCCcc
Q 024461 85 FFQLKPYYTDAGKRLPPSPN 104 (267)
Q Consensus 85 ~~qLk~~Y~~~~~~l~~S~~ 104 (267)
+|.+....+..|..
T Consensus 65 ------~~~~~~~~~~~s~~ 78 (160)
T PRK11032 65 ------SYEESKEEFSDSVF 78 (160)
T ss_pred ------HHHhccccccccHH
Confidence 45555555666654
Done!