Query 024461
Match_columns 267
No_of_seqs 135 out of 283
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_T 26S proteasome regulato 100.0 9.8E-76 3.4E-80 535.7 13.4 260 6-267 2-274 (274)
2 4b0z_A RPN12, 26S proteasome r 100.0 2.7E-61 9.2E-66 429.6 23.6 216 12-237 11-228 (229)
3 1rz4_A Eukaryotic translation 100.0 1.5E-29 5.2E-34 224.9 8.0 158 77-238 25-192 (226)
4 3t5v_A Nuclear mRNA export pro 99.9 1.2E-21 4.2E-26 181.8 14.7 190 22-230 31-255 (316)
5 3txn_A 26S proteasome regulato 97.7 0.014 4.9E-07 55.2 23.6 198 21-238 152-362 (394)
6 4b4t_O 26S proteasome regulato 97.4 0.0089 3E-07 56.1 17.2 198 21-237 140-352 (393)
7 4b4t_P 26S proteasome regulato 97.2 0.023 7.9E-07 54.1 19.0 202 19-239 188-406 (445)
8 4b4t_R RPN7, 26S proteasome re 97.1 0.031 1.1E-06 52.8 18.7 201 18-238 178-393 (429)
9 4b4t_Q 26S proteasome regulato 96.7 0.26 9E-06 43.9 20.3 203 21-238 188-402 (434)
10 1ufm_A COP9 complex subunit 4; 93.2 0.25 8.6E-06 36.6 6.7 59 179-238 12-76 (84)
11 3t5x_A PCI domain-containing p 81.0 4.6 0.00016 34.2 7.4 71 146-220 84-169 (203)
12 3txn_A 26S proteasome regulato 80.9 8 0.00027 36.2 9.7 141 61-212 219-362 (394)
13 4b4t_S RPN3, 26S proteasome re 75.0 29 0.001 33.8 11.9 74 146-220 346-424 (523)
14 3chm_A COP9 signalosome comple 74.9 18 0.00061 29.9 9.1 99 117-220 34-132 (169)
15 1y6u_A XIS, excisionase from t 51.7 26 0.0009 24.6 5.0 40 197-237 16-57 (70)
16 2heo_A Z-DNA binding protein 1 45.7 52 0.0018 22.3 5.7 47 181-228 9-56 (67)
17 3e21_A HFAF1, FAS-associated f 38.4 18 0.0006 23.6 2.1 28 200-229 9-36 (45)
18 2lju_A Putative oxidoreductase 30.4 17 0.00058 28.1 1.2 22 206-229 63-84 (108)
19 1wjt_A Transcription elongatio 30.0 36 0.0012 25.8 3.0 35 1-36 8-42 (103)
20 2b4j_C PC4 and SFRS1 interacti 29.1 83 0.0028 23.8 4.8 31 6-36 6-38 (98)
21 1r1u_A CZRA, repressor protein 26.1 1.1E+02 0.0037 22.2 5.0 58 172-232 16-76 (106)
22 2cpt_A SKD1 protein, vacuolar 25.9 1.5E+02 0.0053 22.6 6.0 48 140-194 20-76 (117)
23 2gmg_A Hypothetical protein PF 24.6 45 0.0016 25.6 2.6 37 181-219 10-49 (105)
24 2jya_A AGR_C_3324P, uncharacte 24.5 19 0.00065 27.8 0.4 22 206-229 55-76 (106)
25 1r1t_A Transcriptional repress 24.3 1.3E+02 0.0044 22.7 5.3 55 172-229 36-91 (122)
26 1wfd_A Hypothetical protein 15 22.0 1.8E+02 0.0062 21.1 5.5 48 140-194 17-72 (93)
27 1z9e_A PC4 and SFRS1 interacti 21.9 1.2E+02 0.0041 24.0 4.7 32 6-37 6-39 (127)
28 2oqg_A Possible transcriptiona 21.7 1.4E+02 0.0047 21.4 4.9 55 172-229 11-66 (114)
29 1u2w_A CADC repressor, cadmium 21.7 1.8E+02 0.0063 21.5 5.7 57 171-229 31-88 (122)
30 1sr2_A Putative sensor-like hi 21.7 2.6E+02 0.0089 21.0 7.3 72 6-93 42-113 (116)
31 3cuo_A Uncharacterized HTH-typ 20.9 1.6E+02 0.0055 20.3 5.0 57 171-229 13-70 (99)
32 3jth_A Transcription activator 20.6 1E+02 0.0035 21.7 3.9 56 171-229 12-68 (98)
No 1
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-76 Score=535.66 Aligned_cols=260 Identities=27% Similarity=0.478 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Q 024461 6 TEVSQQFDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPL-FEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERD 84 (267)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~~~~~~lL~~lKi~L~~~~~L~~~-~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~ 84 (267)
.++.+++++|+++|+++|+++|.++|.++|+.|+++++|+|+ ..+++...+||.+||+|||+||++||+.+|+++|+||
T Consensus 2 ~~l~~l~~~l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~ 81 (274)
T 4b4t_T 2 PSLAELTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENY 81 (274)
T ss_dssp -----------------------------------------------------------CHHHHHHCCSSCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 457889999999999999999999999999999999999885 3345566789999999999999999999999999999
Q ss_pred HhhhhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHh---hhcCchhhhhHHHHHHHHhcchHHHH
Q 024461 85 FFQLKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSST---ALENPCIKHAVELEQSFMEGAYNRVL 161 (267)
Q Consensus 85 ~~qLk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~---~~~~~~I~~~i~leq~LmeG~Y~kv~ 161 (267)
++|||+||+|+.+++|+|+++++|+||||||||+|||++|||++||.||.. +++||+|+||++||+++|+|||+|+|
T Consensus 82 ~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff 161 (274)
T 4b4t_T 82 FNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAW 161 (274)
T ss_dssp HHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999963 45899999999999999999999999
Q ss_pred HhhhcC--CCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceeeCCeEEEecCC
Q 024461 162 SAKQNV--PNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQKAK 239 (267)
Q Consensus 162 ~~~~~~--P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~~g~i~f~~~~ 239 (267)
+..++. |+++|++||++|++|||.+||+||+|||++||+++++++|+|+|++|+.+|++ +|||+++||.++|+..+
T Consensus 162 ~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~--~~gW~~~~~~v~F~~~~ 239 (274)
T 4b4t_T 162 DLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFAL--ERNWPIVNSKVYFNNQS 239 (274)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHH--HTTCCCCSSCCCC----
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHH--HcCCEEeCCEeEECCcc
Confidence 976654 56789999999999999999999999999999999999999999999999984 68999999999998754
Q ss_pred CCC-------CCCCCChHHHHHHHHhHHHHhhhcC
Q 024461 240 DSA-------PCKEIPSLQLINQTLSYARELERIV 267 (267)
Q Consensus 240 ~~~-------~~~~ips~~li~~~L~YA~eLE~IV 267 (267)
+.. ...++||.++|+|+|+||+|||+||
T Consensus 240 ~~~~~~~~~~~~~~ips~~li~~~l~YA~elE~IV 274 (274)
T 4b4t_T 240 KEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274 (274)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccCcHHHHHHHHHHHHHHhhhcC
Confidence 221 2356899999999999999999998
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-61 Score=429.58 Aligned_cols=216 Identities=34% Similarity=0.624 Sum_probs=203.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhh
Q 024461 12 FDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPY 91 (267)
Q Consensus 12 ~~~L~~~~~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~ 91 (267)
+++|+.+|+++|+++|.++|+++|+.|++.+.++|+. ..+++.+||+|||+||++||+.+|+++|+||++|||+|
T Consensus 11 l~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~-----~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~ 85 (229)
T 4b0z_A 11 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTS-----DKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPF 85 (229)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCS-----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCC-----ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999842 24788999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhh--hcCchhhhhHHHHHHHHhcchHHHHHhhhcCCC
Q 024461 92 YTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTA--LENPCIKHAVELEQSFMEGAYNRVLSAKQNVPN 169 (267)
Q Consensus 92 Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~--~~~~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~ 169 (267)
|.++ +++|+++.+++||||||+|++|+++|||++|+.+|++. ++||+|+||++|||++|+|||++||++.+++|+
T Consensus 86 Y~~~---~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~ 162 (229)
T 4b0z_A 86 YHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNF 162 (229)
T ss_dssp HSSC---CCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHcc---CCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9875 78899999999999999999999999999999999764 599999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCceeeCCeEEEec
Q 024461 170 ETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWEMKDGFVFFQK 237 (267)
Q Consensus 170 ~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~~g~i~f~~ 237 (267)
+.|++||+.|++|+|.+|++||+|||++||+++++++|+|+|++++.+|++ ++||+++||.|||++
T Consensus 163 ~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~--~~gw~i~dg~i~F~~ 228 (229)
T 4b0z_A 163 PEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE--ERGWDIRDGVIYFPK 228 (229)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH--HHTCEEETTEEECC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH--HcCCEEeCCEEecCC
Confidence 999999999999999999999999999999999999999999999999985 589999999999986
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.96 E-value=1.5e-29 Score=224.93 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=130.2
Q ss_pred ChHHHHHHHhh--hhhhhhhcCC----C---CCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHH
Q 024461 77 DQDAFERDFFQ--LKPYYTDAGK----R---LPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVE 147 (267)
Q Consensus 77 D~~~F~r~~~q--Lk~~Y~~~~~----~---l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~ 147 (267)
.++.|++|++| .+++|+...+ . +.|+....+++|++||.+|+++..+|||+.++.||+++.+||+|+++|.
T Consensus 25 ~l~~le~Yv~qq~~~~~YD~~anlalLklYq~~p~~~~~~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~ 104 (226)
T 1rz4_A 25 NLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILY 104 (226)
T ss_dssp GHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHH
Confidence 45667777777 5666642211 1 3567778999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhhcCCCce
Q 024461 148 LEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKEEHPEWE 227 (267)
Q Consensus 148 leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW~ 227 (267)
|+++||+|+|++||...+.-| .+..++.-|.++||.+|+.|+++||++||+++++++||+.|++++.+|++ ++||+
T Consensus 105 L~~~L~~~~y~~fW~~l~~~~--~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~--~~GW~ 180 (226)
T 1rz4_A 105 LGDLLETCHFQAFWQALDENM--DLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS--KYGWS 180 (226)
T ss_dssp HHHHHHTTCHHHHHHHSCTTC--HHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH--HHTCE
T ss_pred HHHHHHcCCHHHHHHHHhcCh--hHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH--HCCCE
Confidence 999999999999999876522 23333344999999999999999999999999999998778999999996 46999
Q ss_pred ee-CCeEEEecC
Q 024461 228 MK-DGFVFFQKA 238 (267)
Q Consensus 228 v~-~g~i~f~~~ 238 (267)
++ +|.|+|++.
T Consensus 181 vd~~g~I~~~n~ 192 (226)
T 1rz4_A 181 ADESGQIFICSQ 192 (226)
T ss_dssp ECC--CEECCCH
T ss_pred ECCCccEEeCCC
Confidence 97 778877654
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=181.75 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh------hccCh--------HHHHHHHhh
Q 024461 22 KDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSV------KVEDQ--------DAFERDFFQ 87 (267)
Q Consensus 22 ~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si------~~~D~--------~~F~r~~~q 87 (267)
.++.=+..-+.-++-.|+--+.- + ..|.+|||.+|++.| ..+|. +.+..|..+
T Consensus 31 ~~y~fi~Dr~RsIRqDltvQ~i~------~-------~~~v~v~E~~aRf~i~~~~~L~~~~~~f~~~~~~eQl~~~L~s 97 (316)
T 3t5v_A 31 ESEGFLWDRMRSIRQDFTYQNYS------G-------PEAVDCNERIVRIHLLILHIMVKSNVEFSLQQELEQLHKSLIT 97 (316)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCC------S-------HHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhhhccCceeeccC------C-------chHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHH
Confidence 56777777777777777764431 1 237899999999986 34443 245555668
Q ss_pred hhhhhhhcCCCCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHH--------------
Q 024461 88 LKPYYTDAGKRLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFM-------------- 153 (267)
Q Consensus 88 Lk~~Y~~~~~~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~Lm-------------- 153 (267)
|+.+|.+.+..-..+++..++.||+||+.|.+. +++..+..+|+++++||.|++++.|++++.
T Consensus 98 L~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~---~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~ 174 (316)
T 3t5v_A 98 LSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDP---QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTEN 174 (316)
T ss_dssp HHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCT---HHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSS
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccc---hHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhccccccccccccc
Confidence 888899853322357899999999999988764 788899999999999999999999999985
Q ss_pred -hcchHHHHHhhhcCCCccH--HHHHHHHHHHHHHHHHHhHHHcc----CCCCHHHHHHhhCCCCHHHHHHHHhhcCCCc
Q 024461 154 -EGAYNRVLSAKQNVPNETY--GYFMDLLAKTVRDEIAGCSEKAY----DYLSIKDAGQMLLFTSDQELLEYVKEEHPEW 226 (267)
Q Consensus 154 -eG~Y~kv~~~~~~~P~~~~--~~fm~~L~~tiR~eia~~iekAY----~sl~l~~a~~lL~f~s~~e~~~f~~~~~rgW 226 (267)
.|||+++|+...+ |+..| +.+|+.+++++|..++.||.+|| .++|+++++++|+|+|++|+.+|+. ..||
T Consensus 175 ~~gNY~rFFrL~~~-~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~--~~gl 251 (316)
T 3t5v_A 175 CLNFYARFFQLMQS-PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN--YYSI 251 (316)
T ss_dssp CCCCHHHHHHHHTC-TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH--HTTC
T ss_pred ccchHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH--HCCC
Confidence 3999999999887 32234 89999999999999999999999 4899999999999999999999994 6899
Q ss_pred eeeC
Q 024461 227 EMKD 230 (267)
Q Consensus 227 ~v~~ 230 (267)
++.+
T Consensus 252 ~~~~ 255 (316)
T 3t5v_A 252 EIIN 255 (316)
T ss_dssp CEET
T ss_pred eEeC
Confidence 9985
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.69 E-value=0.014 Score=55.20 Aligned_cols=198 Identities=8% Similarity=0.078 Sum_probs=130.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh-hccChHH-HHHHHhhhhhhhhhcCCC
Q 024461 21 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSV-KVEDQDA-FERDFFQLKPYYTDAGKR 98 (267)
Q Consensus 21 ~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si-~~~D~~~-F~r~~~qLk~~Y~~~~~~ 98 (267)
-+|+.+++..+.+.+-.... .++ +| .+-=.+-|.+.++.+ ..+|+.. |..++.-.+. |..
T Consensus 152 ~~n~~k~k~~l~~a~~~~~a---i~~----~p------~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~-f~~---- 213 (394)
T 3txn_A 152 LSNLPKARAALTSARTTANA---IYC----PP------KVQGALDLQSGILHAADERDFKTAFSYFYEAFEG-FDS---- 213 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---SCC----CH------HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-HTT----
T ss_pred hccHHHHHHHHHHHHhhhcc---CCC----CH------HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc-ccc----
Confidence 46777777777776554322 211 12 234567789999999 8999754 3333333222 321
Q ss_pred CCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHHhhh----cCCCc-cHH
Q 024461 99 LPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQ----NVPNE-TYG 173 (267)
Q Consensus 99 l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~~~~----~~P~~-~~~ 173 (267)
.+++.+..++-+-+|.-|..++..|+...+..=......+|.|.....|-++.-.|+|..+..... .+..+ ...
T Consensus 214 -~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~ 292 (394)
T 3txn_A 214 -VDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQ 292 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHH
Confidence 234555666666556666677778887543211001127899999999999999999988776432 22222 224
Q ss_pred HHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecC
Q 024461 174 YFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 174 ~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~ 238 (267)
...+.|...||.....-+-+.|++|+++++++.++++ +++++..+.. ..-.=++| +|.++|..+
T Consensus 293 ~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 293 AHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 4467899999999999999999999999999999995 8888777732 22222677 677777654
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0089 Score=56.14 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCCCC
Q 024461 21 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLP 100 (267)
Q Consensus 21 ~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~ 100 (267)
.+|...|...|.++|..+-..+...| .+.-.+|+..+.+.-..+|.++|-++.-+--..|... ..+
T Consensus 140 ~~d~~~a~~~l~~~~~~l~~~~~~~~------------~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~-~~~- 205 (393)
T 4b4t_O 140 KNDLVKARDLLDDLEKTLDKKDSIPL------------RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS-TSI- 205 (393)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCSSS------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SSC-
T ss_pred cCCHHHHHHHHHHHHHhhhccCCccH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc-ccC-
Confidence 46889999999999987766543322 4567889999999999999988877655444444322 112
Q ss_pred CCcchhhHHHHHHHH-HHhcCCHHHHHHHHHhccHhhh-cCchhhhhHHHHHHHHhcchHHHHHhhh----cCCCccHHH
Q 024461 101 PSPNEYMILGLNLLR-LLVQNRIAEFHTELELLSSTAL-ENPCIKHAVELEQSFMEGAYNRVLSAKQ----NVPNETYGY 174 (267)
Q Consensus 101 ~S~~~~~llgL~LL~-LLsqn~i~efh~~LE~l~~~~~-~~~~I~~~i~leq~LmeG~Y~kv~~~~~----~~P~~~~~~ 174 (267)
+...-.-+++.++. -|...++-.|-.+|..-..... ++|.+....+|=+..-.|+|..+-.... +.| ....
T Consensus 206 -~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~--~l~~ 282 (393)
T 4b4t_O 206 -TLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIP--ILAQ 282 (393)
T ss_dssp -SHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSH--HHHH
T ss_pred -CHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCc--chhh
Confidence 23333344555444 4667778888887765443434 6788888899999999999999866321 222 3444
Q ss_pred HHHHHHHHHHHHHHHhHH--HccCCCCHHHHHHhhCCCCHHHHHHHHhh-----cCCCceee--CCeEEEec
Q 024461 175 FMDLLAKTVRDEIAGCSE--KAYDYLSIKDAGQMLLFTSDQELLEYVKE-----EHPEWEMK--DGFVFFQK 237 (267)
Q Consensus 175 fm~~L~~tiR~eia~~ie--kAY~sl~l~~a~~lL~f~s~~e~~~f~~~-----~~rgW~v~--~g~i~f~~ 237 (267)
....+...+|.-....+. +.|++||++++++.|+++ +++++.++.. .=+| ++| +|.|+|..
T Consensus 283 ~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~G-kIDQv~~~v~v~~ 352 (393)
T 4b4t_O 283 HESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKG-SIDQVNELVTISW 352 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSS-CEETTTTEECC--
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEE-EEcCCCCEEEEEe
Confidence 455566677765554333 457899999999999997 8999998842 1235 345 66666543
No 7
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.023 Score=54.06 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=127.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCC
Q 024461 19 MTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKR 98 (267)
Q Consensus 19 ~~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~ 98 (267)
...+|+.++..++.+++......+ + + . .+--.+++.++.+....+|+.+--+|+-++-.-|...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~---~----~----~--~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~--- 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNP---K----Y----E--SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK--- 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSS---C----C----H--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---
T ss_pred HHCCCHHHHHHHHHHHHHhhcccC---C----c----H--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc---
Confidence 345677777777777665444321 1 1 1 2345789999999999999877766666554444432
Q ss_pred CCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcch---HHHHHhhhcC--CC----
Q 024461 99 LPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAY---NRVLSAKQNV--PN---- 169 (267)
Q Consensus 99 l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y---~kv~~~~~~~--P~---- 169 (267)
..+......+..-+++++-.+...++...+.++-.+. ..+.|..--.|.+....++. ..+....... |.
T Consensus 252 -~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~ 329 (445)
T 4b4t_P 252 -SDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAF 329 (445)
T ss_dssp -SCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSC
T ss_pred -CCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhh
Confidence 1122334455566666555555556666666654322 33555555667777777754 4444433211 11
Q ss_pred --ccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecCC
Q 024461 170 --ETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKAK 239 (267)
Q Consensus 170 --~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~~ 239 (267)
+....-...|..++++.-...+.+.|++|+++.++++|+++ +++++.++.. ..-.=++| +|.|+|..++
T Consensus 330 ~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~ 406 (445)
T 4b4t_P 330 GGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPK 406 (445)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC----
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCC
Confidence 11144567799999999999999999999999999999997 8999999842 11222566 7777887643
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.031 Score=52.77 Aligned_cols=201 Identities=10% Similarity=0.045 Sum_probs=124.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCC
Q 024461 18 AMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGK 97 (267)
Q Consensus 18 ~~~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~ 97 (267)
....+|+..+...+.+++....+.+ .+. +. -.+-..++++.+..+|+..=-+++-..-.-|.
T Consensus 178 ~l~~~d~~~~~~~~~ka~~~~~~~~--------d~~----~~--~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~---- 239 (429)
T 4b4t_R 178 GFFYNDQLYVKEKLEAVNSMIEKGG--------DWE----RR--NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT---- 239 (429)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTCC--------CTH----HH--HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC----
T ss_pred HHHhccHHHHHHHHHHHHHhhhcCC--------CHH----HH--HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC----
Confidence 3446788888888888876544311 111 11 13456678888888887665554433322221
Q ss_pred CCCCCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccH--hh-hcCchhhhhHHHHHHHHhcchHHHHHhh----hcCC--
Q 024461 98 RLPPSPNEYMILGLNLLRLLVQNRIAEFHTELELLSS--TA-LENPCIKHAVELEQSFMEGAYNRVLSAK----QNVP-- 168 (267)
Q Consensus 98 ~l~~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~--~~-~~~~~I~~~i~leq~LmeG~Y~kv~~~~----~~~P-- 168 (267)
..+......+.-+..|.-+...+-.++..-+-.-|. .. ..+|.+.....+=.++..++|..+|... .+..
T Consensus 240 -~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (429)
T 4b4t_R 240 -SIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIP 318 (429)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTT
T ss_pred -ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcc
Confidence 122233444444444444444444444432211111 11 2567888888888999999999998742 1211
Q ss_pred CccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHH----hhcCCCceee--CCeEEEecC
Q 024461 169 NETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYV----KEEHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 169 ~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~----~~~~rgW~v~--~g~i~f~~~ 238 (267)
.+....-.+.|...||..+...+-+.|++|+++.+++.|+++ ++++++++ .+..-.=++| +|.|++..+
T Consensus 319 d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 319 CKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp CTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 223344467789999999999999999999999999999997 66666555 3333345677 677777654
No 9
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.26 Score=43.93 Aligned_cols=203 Identities=10% Similarity=0.110 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhhhhhhhcCCCCC
Q 024461 21 RKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDAGKRLP 100 (267)
Q Consensus 21 ~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~~qLk~~Y~~~~~~l~ 100 (267)
.+|+.++...+.+....-.. .+. ++ .+--.+++.+..+....+|...-.+|+.+.-..|... ....
T Consensus 188 ~~~~~~A~~~~~~al~~~~~---~~~----~~------~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~-~~~~ 253 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANS---IYC----PT------QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL-TTHN 253 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---SCC----CH------HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT-TTSS
T ss_pred hCcHHHHHHHHHHHHHHhhc---CCC----ch------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-hhhh
Confidence 46777777777665443222 111 11 2234678888888889999888777777665555543 1111
Q ss_pred CCcchhhHHHHHHHHHHhcCCHHHHHHHHHhccHhh-hcCchhhhhHHHHHHHHhcchHHHHHhhhc----C-CCccHHH
Q 024461 101 PSPNEYMILGLNLLRLLVQNRIAEFHTELELLSSTA-LENPCIKHAVELEQSFMEGAYNRVLSAKQN----V-PNETYGY 174 (267)
Q Consensus 101 ~S~~~~~llgL~LL~LLsqn~i~efh~~LE~l~~~~-~~~~~I~~~i~leq~LmeG~Y~kv~~~~~~----~-P~~~~~~ 174 (267)
........+.+.++.....+...+....+....... ..++.+..-..+......+++......... . ..+....
T Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T 4b4t_Q 254 SYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRS 333 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 222334455555555555555555555544432222 256777777778888888877666543221 1 1223455
Q ss_pred HHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecC
Q 024461 175 FMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 175 fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~ 238 (267)
.++.+..++|.....-+.+.|++|+++.++++|+++ +++++.++.. ..-.=+++ +|.+++...
T Consensus 334 ~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~ 402 (434)
T 4b4t_Q 334 HFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEGKLSQMILDKIFYGVLDQGNGWLYVYET 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSSCCEEETTTTEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHHHHHHHHhCCCcceecccccCeEeeCCC
Confidence 677889999999999999999999999999999997 7888776632 11122445 667766543
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=93.25 E-value=0.25 Score=36.65 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh----cCCCceee--CCeEEEecC
Q 024461 179 LAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE----EHPEWEMK--DGFVFFQKA 238 (267)
Q Consensus 179 L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~----~~rgW~v~--~g~i~f~~~ 238 (267)
|.+++.++-...+.+-|++|+++.++++|+++ ++++.+++.. ..-.=++| +|.|+|..+
T Consensus 12 L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 45566666667788899999999999999998 8888888742 22223555 677887653
No 11
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=80.98 E-value=4.6 Score=34.19 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=53.6
Q ss_pred HHHHHHHHhcchHHHHHhhhcCCCccHHHHHHH----HHHHHHHHHHHhHHH------ccCCCCHHHHHHhhCCC-----
Q 024461 146 VELEQSFMEGAYNRVLSAKQNVPNETYGYFMDL----LAKTVRDEIAGCSEK------AYDYLSIKDAGQMLLFT----- 210 (267)
Q Consensus 146 i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~----L~~tiR~eia~~iek------AY~sl~l~~a~~lL~f~----- 210 (267)
..|=+++-.||..++-....+-. ..|++. +++++|.-+....-| .|+.||+++++.-|.++
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~ 159 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHE----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDV 159 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTH----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHhH----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCC
Confidence 36779999999998877655411 345543 788888877766655 79999999999999774
Q ss_pred CHHHHHHHHh
Q 024461 211 SDQELLEYVK 220 (267)
Q Consensus 211 s~~e~~~f~~ 220 (267)
+++|++..+.
T Consensus 160 ~~~evE~ila 169 (203)
T 3t5x_A 160 DIDEVQCILA 169 (203)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6888887763
No 12
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.86 E-value=8 Score=36.24 Aligned_cols=141 Identities=12% Similarity=0.100 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHhhh-hhhhhhcCCCCCCCcchhhHHH-HHHHHHHhcCCHHHHHHHHHhccHhhhc
Q 024461 61 ARDIYEHAVLLSVKVEDQDAFERDFFQL-KPYYTDAGKRLPPSPNEYMILG-LNLLRLLVQNRIAEFHTELELLSSTALE 138 (267)
Q Consensus 61 ar~vlEi~al~si~~~D~~~F~r~~~qL-k~~Y~~~~~~l~~S~~~~~llg-L~LL~LLsqn~i~efh~~LE~l~~~~~~ 138 (267)
+.+++-++++.++..+|..++....++= ...|. . .++-. ..|+.....+++.+|-..|+...+....
T Consensus 219 ~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~-~----------pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~ 287 (394)
T 3txn_A 219 ALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYS-G----------RDIDAMKSVAEASHKRSLADFQAALKEYKKELAE 287 (394)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTC-S----------HHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhccccccccC-C----------ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 4678888999999999998888766543 22242 1 12323 3456678899999999999998777779
Q ss_pred Cchhh-hhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCH
Q 024461 139 NPCIK-HAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSD 212 (267)
Q Consensus 139 ~~~I~-~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~ 212 (267)
||+++ |.-.|.+.+.+.++-+++..+..+.-+.-+-....=.+-+-..++.+|...-=.=.++....++.+..+
T Consensus 288 D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 288 DVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 99975 467899999999999999887766532222222222667777888888765545556777777777543
No 13
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.00 E-value=29 Score=33.79 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHHHHhcchHHHHHhhhcCC-----CccHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 146 VELEQSFMEGAYNRVLSAKQNVP-----NETYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 146 i~leq~LmeG~Y~kv~~~~~~~P-----~~~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
..|-++.-.||-.++-....+-- ...|. .+..|...+...-...+.++|.+||+.+++..|+++|+++++..+.
T Consensus 346 ~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~-LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVA 424 (523)
T 4b4t_S 346 YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ-LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVS 424 (523)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH-HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcceeccCChhH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHH
Confidence 56888889999888755432200 11232 3445566666666788889999999999999999987777766663
No 14
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=74.91 E-value=18 Score=29.88 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=69.4
Q ss_pred HhcCCHHHHHHHHHhccHhhhcCchhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHhHHHccC
Q 024461 117 LVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLLAKTVRDEIAGCSEKAYD 196 (267)
Q Consensus 117 Lsqn~i~efh~~LE~l~~~~~~~~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L~~tiR~eia~~iekAY~ 196 (267)
|+..++=.|..+|..=+....++..-+...+|=+....|+|...-....+.|. -. +.+...+|.=....+...-+
T Consensus 34 l~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p~--L~---~~~~~KlrlLtL~sLa~~~~ 108 (169)
T 3chm_A 34 TSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPH--LS---PDQILKLKQLTVLTLAESNK 108 (169)
T ss_dssp HHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSCC--CC---HHHHHHHHHHHHHHHHHHCS
T ss_pred hcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCcc--hH---HHHHHHHHHHHHHHHHHhCC
Confidence 44555656766663322222333334667788888999999887665556673 12 56777777766665555678
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHh
Q 024461 197 YLSIKDAGQMLLFTSDQELLEYVK 220 (267)
Q Consensus 197 sl~l~~a~~lL~f~s~~e~~~f~~ 220 (267)
.||.+++++-|.++|..|++.|+-
T Consensus 109 ~lsy~~I~~~l~i~~~~evE~lvI 132 (169)
T 3chm_A 109 VLPYDTLMVELDVSNVRELEDFLI 132 (169)
T ss_dssp EEEHHHHHHHHTCCSHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999985
No 15
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=51.70 E-value=26 Score=24.61 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=32.6
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHhhc-CCCceee-CCeEEEec
Q 024461 197 YLSIKDAGQMLLFTSDQELLEYVKEE-HPEWEMK-DGFVFFQK 237 (267)
Q Consensus 197 sl~l~~a~~lL~f~s~~e~~~f~~~~-~rgW~v~-~g~i~f~~ 237 (267)
.|++++||+.|++. +.-+.+.+.+. ..+|.+. ++++.|..
T Consensus 16 ~LTi~EaAeylgIg-~~~l~~L~~~~~~~~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 16 TLTIEEASKYFRIG-ENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70)
T ss_dssp EEEHHHHHHHTCSC-HHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred eeCHHHHHHHHCcC-HHHHHHHHHcCCCCCcEEEeCCEEEEEH
Confidence 68899999999998 99999999653 4689888 45666665
No 16
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=45.67 E-value=52 Score=22.33 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCcee
Q 024461 181 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEM 228 (267)
Q Consensus 181 ~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v 228 (267)
+..|.+|...+...=..++..++++.|+++ ...+...++. ++.|+..
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEe
Confidence 346888999887643569999999999998 7877777743 3457844
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=38.36 E-value=18 Score=23.60 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhcCCCceee
Q 024461 200 IKDAGQMLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 200 l~~a~~lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
+.+.+.+.+.++.+++..|+. ..+|.++
T Consensus 9 ia~F~~iTG~~d~~~A~~~Le--a~nWDLe 36 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLE--QNNWDLV 36 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHH--HTTTCHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH--HcCCcHH
Confidence 578889999998899999994 5799985
No 18
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=30.36 E-value=17 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.5
Q ss_pred hhCCCCHHHHHHHHhhcCCCceee
Q 024461 206 MLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 206 lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
-|.|+|.+++.+||. ..||...
T Consensus 63 ~L~F~skE~AiayAe--k~G~~y~ 84 (108)
T 2lju_A 63 CLSFTTRELAIAYAV--AHKIDYT 84 (108)
T ss_dssp CEEESSHHHHHHHHH--HTTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 488999999999984 5799873
No 19
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=30.00 E-value=36 Score=25.83 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024461 1 MDPKLTEVSQQFDRFKAAMTRKDYNTCTQLLSQLKV 36 (267)
Q Consensus 1 m~~~~~~~~~l~~~L~~~~~~~~~~~~~~lL~~lKi 36 (267)
|+. .+++..+.++|.++....+.+.|..+|..|+-
T Consensus 8 M~~-e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~ 42 (103)
T 1wjt_A 8 MGL-EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS 42 (103)
T ss_dssp SCS-HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT
T ss_pred cch-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 443 67899999999987766777889999998864
No 20
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=29.09 E-value=83 Score=23.78 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 024461 6 TEVSQQFDRFKAAMT--RKDYNTCTQLLSQLKV 36 (267)
Q Consensus 6 ~~~~~l~~~L~~~~~--~~~~~~~~~lL~~lKi 36 (267)
+.+.++.++++.+.. +.|..+|-+.|.+++-
T Consensus 6 ~~l~~L~~~ik~~L~~~~~Dv~kcl~~L~~l~~ 38 (98)
T 2b4j_C 6 SRLQRIHAEIKNSLKIDNLDVNRCIEALDELAS 38 (98)
T ss_dssp HHHHHHHHHHHHHTCTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhc
Confidence 578889999998755 8899999999999986
No 21
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=26.10 E-value=1.1e+02 Score=22.16 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee--CCe
Q 024461 172 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK--DGF 232 (267)
Q Consensus 172 ~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~--~g~ 232 (267)
...++..|.+..|.+|...+. -..+++.++++.++++ ...+...++. .+.||... +|+
T Consensus 16 ~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~~~~gr 76 (106)
T 1r1u_A 16 VTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKAKRQGQ 76 (106)
T ss_dssp HHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455677788899999999886 3578999999999997 6666666532 24688764 454
No 22
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.90 E-value=1.5e+02 Score=22.62 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=32.7
Q ss_pred chhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHH---------HHHHHHHHHHhHHHc
Q 024461 140 PCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL---------AKTVRDEIAGCSEKA 194 (267)
Q Consensus 140 ~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L---------~~tiR~eia~~iekA 194 (267)
..+..+|+.++. |+|...+..+.+ -..+||..+ .+.+|.++...++||
T Consensus 20 ~lv~~Ave~D~a---g~y~eAl~lY~~----Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RA 76 (117)
T 2cpt_A 20 DLASKAAQEDKA---GNYEEALQLYQH----AVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRA 76 (117)
T ss_dssp HHHHHHHHHHHH---TCHHHHHHHHHH----HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---cCHHHHHHHHHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 355666666655 999999998765 245666655 456777777777664
No 23
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.56 E-value=45 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHccCCCCHHHHHHhhCCC--CHHH-HHHHH
Q 024461 181 KTVRDEIAGCSEKAYDYLSIKDAGQMLLFT--SDQE-LLEYV 219 (267)
Q Consensus 181 ~tiR~eia~~iekAY~sl~l~~a~~lL~f~--s~~e-~~~f~ 219 (267)
.|+|++|+..+.. .-++..+++..|+++ ++.+ +.+-+
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke~Vy~hL 49 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKKVILEDL 49 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHHHHHHHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHHHHHHHH
Confidence 5899999999973 689999999999994 4666 44443
No 24
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=24.54 E-value=19 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.2
Q ss_pred hhCCCCHHHHHHHHhhcCCCceee
Q 024461 206 MLLFTSDQELLEYVKEEHPEWEMK 229 (267)
Q Consensus 206 lL~f~s~~e~~~f~~~~~rgW~v~ 229 (267)
-|.|+|.+++.+||. ..||...
T Consensus 55 ~L~F~skE~AiayAe--k~G~~y~ 76 (106)
T 2jya_A 55 KLTFETQEQAEAYAQ--RKGIEYR 76 (106)
T ss_dssp EEEESSHHHHHHHHH--HHTCEEE
T ss_pred eEecCCHHHHHHHHH--HcCCEEE
Confidence 478999999999984 5799863
No 25
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.30 E-value=1.3e+02 Score=22.65 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee
Q 024461 172 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 229 (267)
Q Consensus 172 ~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~ 229 (267)
...++..|.+..|.+|...+.. ..+++.++++.|+++ ...+...++. ++.||...
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 4566777888899999998853 578999999999997 6666666532 24688874
No 26
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.97 E-value=1.8e+02 Score=21.14 Aligned_cols=48 Identities=27% Similarity=0.483 Sum_probs=33.9
Q ss_pred chhhhhHHHHHHHHhcchHHHHHhhhcCCCccHHHHHHHH--------HHHHHHHHHHhHHHc
Q 024461 140 PCIKHAVELEQSFMEGAYNRVLSAKQNVPNETYGYFMDLL--------AKTVRDEIAGCSEKA 194 (267)
Q Consensus 140 ~~I~~~i~leq~LmeG~Y~kv~~~~~~~P~~~~~~fm~~L--------~~tiR~eia~~iekA 194 (267)
..++-+|+.++. |+|...+..+.+ -..+||..+ .+.+|.++...+.||
T Consensus 17 ~lv~~Ave~D~~---g~y~eAl~~Y~~----Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RA 72 (93)
T 1wfd_A 17 AVLKRAVELDAE---SRYQQALVCYQE----GIDMLLQVLKGTKESSKRCVLRTKISGYMDRA 72 (93)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHH----HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCHHHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 355666666665 999999998765 245676654 457888888887775
No 27
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=21.89 E-value=1.2e+02 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 024461 6 TEVSQQFDRFKAAMT--RKDYNTCTQLLSQLKVL 37 (267)
Q Consensus 6 ~~~~~l~~~L~~~~~--~~~~~~~~~lL~~lKi~ 37 (267)
+.+.++.++++.+.. +.|..+|-+.|.+|+-.
T Consensus 6 ~~L~~L~~~Ik~~L~v~~~Dv~kCl~~Leel~~l 39 (127)
T 1z9e_A 6 SRLQRIHAEIKNSLKIDNLDVNRCIEALDELASL 39 (127)
T ss_dssp HHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHccc
Confidence 578889999998755 88999999999999873
No 28
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=21.73 E-value=1.4e+02 Score=21.38 Aligned_cols=55 Identities=13% Similarity=-0.011 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee
Q 024461 172 YGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 229 (267)
Q Consensus 172 ~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~ 229 (267)
...++..+.+..|.+|..++. -..++..++++.++++ ...+...++. .+.||...
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG--RADQSASSLATRLPVS-RQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--HSCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCChHHHHHHHHHH--cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeE
Confidence 455667777888999999883 3569999999999997 6666666532 24688864
No 29
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.72 E-value=1.8e+02 Score=21.53 Aligned_cols=57 Identities=12% Similarity=0.006 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee
Q 024461 171 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 229 (267)
Q Consensus 171 ~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~ 229 (267)
...-++..|.+..|.+|...+.. ...++..++++.|+++ ...+...++. .+.||...
T Consensus 31 ~~~~~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 31 GVSQILKAIADENRAKITYALCQ-DEELCVCDIANILGVT-IANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 35667777889999999998863 4679999999999997 6766666642 24688864
No 30
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=21.66 E-value=2.6e+02 Score=21.01 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Q 024461 6 TEVSQQFDRFKAAMTRKDYNTCTQLLSQLKVLLTGFRSLPPLFEDTPNAIRELTLARDIYEHAVLLSVKVEDQDAFERDF 85 (267)
Q Consensus 6 ~~~~~l~~~L~~~~~~~~~~~~~~lL~~lKi~L~~~~~L~~~~~~~~~~~~~l~lar~vlEi~al~si~~~D~~~F~r~~ 85 (267)
.+..+-.+.|..++..+|++....+.=+||-..--+++ ..|.-.-.-+|.. ++.++..+....+
T Consensus 42 ~s~~~Dl~~L~~A~~~~D~~~l~~~aHrLKGaa~~lG~------------~~L~~lc~~LE~~----~~~~~~~~l~~~i 105 (116)
T 1sr2_A 42 DTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNL------------VPGKQLCETLEHL----IREKDVPGIEKYI 105 (116)
T ss_dssp TTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHH----HHTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHHHHHHHH----HHcCCHHHHHHHH
Confidence 34566678888888899999999999999998666542 2233334445653 4788889999999
Q ss_pred hhhhhhhh
Q 024461 86 FQLKPYYT 93 (267)
Q Consensus 86 ~qLk~~Y~ 93 (267)
.+|..|+.
T Consensus 106 ~~L~~~l~ 113 (116)
T 1sr2_A 106 SDIDSYVK 113 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 31
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.89 E-value=1.6e+02 Score=20.27 Aligned_cols=57 Identities=5% Similarity=-0.094 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee
Q 024461 171 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 229 (267)
Q Consensus 171 ~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~ 229 (267)
....++..+.+..|.+|...+.. -..++.+++++.++++ ...+...++. .+.||...
T Consensus 13 ~~~~~~~~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 13 QAAALLKAMSHPKRLLILCMLSG-SPGTSAGELTRITGLS-ASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 45566777778899999988853 4479999999999997 6666655532 24688864
No 32
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=20.56 E-value=1e+02 Score=21.70 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHccCCCCHHHHHHhhCCCCHHHHHHHHhh-cCCCceee
Q 024461 171 TYGYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAGQMLLFTSDQELLEYVKE-EHPEWEMK 229 (267)
Q Consensus 171 ~~~~fm~~L~~tiR~eia~~iekAY~sl~l~~a~~lL~f~s~~e~~~f~~~-~~rgW~v~ 229 (267)
...-++..|.+..|.+|...+.. ..++.+++++.++++ ...+...++. .+.||...
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~ 68 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLHN--QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTT 68 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 45667788889999999998865 789999999999998 6666555532 24688764
Done!