BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024463
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/292 (58%), Positives = 209/292 (71%), Gaps = 27/292 (9%)
Query: 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTR 62
++LLMATAL+V PE + + +LR RQ+ IAEITEMIHVASL+HDDVLDDADTR
Sbjct: 57 ILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTR 116
Query: 63 RGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------------- 101
RG+GSL+ VMGNK+++LAGD L+SRA ALA+LK+TEV+
Sbjct: 117 RGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSS 176
Query: 102 ------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 155
M+ YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+QLIDDI
Sbjct: 177 TAARYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDI 236
Query: 156 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 215
LDFTGTSASLGK SL+D+R+G+ITAPILFAMEEFPQLR ++ + +P NVD+ LEYLGK
Sbjct: 237 LDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVAADPRNVDIALEYLGK 296
Query: 216 SHGIQRTTEXXXXXXXXXXXXIDSLPETHDVDATNARTALVHITQKIITRNK 267
S GIQR E I SLPET + D +R AL+ +T ++ITRNK
Sbjct: 297 SKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/292 (58%), Positives = 208/292 (71%), Gaps = 27/292 (9%)
Query: 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTR 62
++LLMATAL+V PE + + +LR RQ+ IAEITEMIHVASL+HDDVLDDADTR
Sbjct: 57 ILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTR 116
Query: 63 RGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------------- 101
RG+GSL+ VMGNK+++LAGD L+SRA ALA+LK+TEV+
Sbjct: 117 RGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSS 176
Query: 102 ------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 155
M+ YMQKTY KTA+L+SNSCKAVA L+GQ EVA LAFEYG+NLGLA+QLIDDI
Sbjct: 177 TEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDI 236
Query: 156 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 215
LDFTGTSASLGK SL+D+R+G+ITAPILFAMEEFPQLR ++ +P NVD+ LEYLGK
Sbjct: 237 LDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGK 296
Query: 216 SHGIQRTTEXXXXXXXXXXXXIDSLPETHDVDATNARTALVHITQKIITRNK 267
S GIQR E I SLPET + D +R AL+ +T ++ITRNK
Sbjct: 297 SKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 29/172 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTE--- 99
E++H+ASL+HDD +D++D RRG S+ AI G L++RAL +A++ +++
Sbjct: 74 ELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQ 133
Query: 100 ------------------------VIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 135
V Y+++ KTA L+ SC A LS Q +E +
Sbjct: 134 IFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGA-LSSQLDEQS 192
Query: 136 TLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 186
T ++G +G++YQ+IDDILD+T A+LGK +D+RNG IT P++ A+
Sbjct: 193 TYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI 244
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 29/177 (16%)
Query: 41 ITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS------ 94
I EMI ASL+HDDV+D A RR + S++++ GN A++ GD+ S+A L+
Sbjct: 65 IVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMGELIA 124
Query: 95 ---------LKHTEV----IMECY---MQKTY----NKTAALVSNSCKAVAYLSGQREEV 134
L E+ + EC+ QK + +KTA + S K++A L +
Sbjct: 125 QALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--- 181
Query: 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ 191
A + ++G N G+A+Q+IDD+LD T + +LGK + +D + G T P L E+ Q
Sbjct: 182 AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQ 238
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 39 AEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT 98
A + E+ H+A+L HDDV+D+A RRG+ S ++ N +AILAGD+L++ A ++ L
Sbjct: 101 AVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTD 160
Query: 99 EVI-------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREE 133
V +E Y KT L++++ A +G E
Sbjct: 161 TVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPE 220
Query: 134 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM-EEFP-- 190
+G +G+ +Q++DDI+D + GK TDLR G+ T P+L+A+ E+ P
Sbjct: 221 HIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVG 280
Query: 191 -QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTEXXXXXXXXXXXXIDSLPET 243
+LR + ++ V+ +LE L +S G Q + +D LP++
Sbjct: 281 AELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDS 334
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLI----------------S 86
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 87 RALVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
AL + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLI----------------S 86
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 87 RALVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
AL + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLI----------------S 86
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 87 RALVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
AL + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLI----------------S 86
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKARR 130
Query: 87 RALVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
AL + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 27/176 (15%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALV------- 90
+A E IH A+L+HDDV+D++ RRG + + + NK ++L GD L +R+
Sbjct: 78 LAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGN 137
Query: 91 ---------ALASLKHTEVIM-----------ECYMQKTYNKTAALVSNSCKAVAYLSGQ 130
A A + EV+ + Y++ KTAAL S + + + G
Sbjct: 138 MRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGA 197
Query: 131 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 186
E+ F+YG LG+A+Q++DD+LD+ G SA +GK + D R +T P++ A+
Sbjct: 198 PEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 78/166 (46%), Gaps = 32/166 (19%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL------- 95
E+IH SL+HDD++D +TRRG ++ + G +AILAGDLL S+A A+A
Sbjct: 76 ELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKK 135
Query: 96 -------------------------KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQ 130
K + V +E YM+ KT AL S K +
Sbjct: 136 ARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTD 195
Query: 131 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 176
EE +G+N+G+A+Q+ DD+LD LGK +D+R G
Sbjct: 196 NEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKG 241
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E+ H+ASL+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELYHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+A L+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLAFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL------- 95
E++H+ SL+HDDV+D A RRG +++ + G+K A+ AGDL++ A + +
Sbjct: 71 ELVHLYSLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 96 -------------------KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
++ + E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A RG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ASL+HDDV+D A R G +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLASLLHDDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 27/178 (15%)
Query: 36 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA---LVAL 92
Q +A E IH A+L+HDDV+D + RRG + + G ++L GD L +RA +V
Sbjct: 88 QKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVET 147
Query: 93 ASLKHTEVIMEC------------------------YMQKTYNKTAALVSNSCKAVAYLS 128
S+K E++ Y++ KTA L + + +A A +
Sbjct: 148 NSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSA 207
Query: 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 186
G + +YG NLGLA+QL DD LD+ G + +LGK + D R G T P+L A+
Sbjct: 208 GVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 28/170 (16%)
Query: 36 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLIS--------- 86
Q A E++HV +LIHDDV+DD+ TRRG+ ++ G + AI AGD + +
Sbjct: 79 QAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKS 138
Query: 87 ---RALV-----ALASLKHTE-----------VIMECYMQKTYNKTAALVSNSCKAVAYL 127
R+L+ A+ + E + ++ Y+ + KTA L + SC A L
Sbjct: 139 TTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQL 198
Query: 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 177
+G + V + G +G AYQ++DDILD+ G K L DLR+G+
Sbjct: 199 AGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 28/170 (16%)
Query: 36 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLIS--------- 86
Q A E++HV +LIHDDV+DD+ TRRG+ ++ G + AI AGD + +
Sbjct: 72 QAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKS 131
Query: 87 ---RALV-----ALASLKHTE-----------VIMECYMQKTYNKTAALVSNSCKAVAYL 127
R+L+ A+ + E + ++ Y+ + KTA L + SC A L
Sbjct: 132 TTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQL 191
Query: 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 177
+G + V + G +G AYQ++DDILD+ G K L DLR+G+
Sbjct: 192 AGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGV 241
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA-------------- 88
E++H+ L+HDDV+D A RRG +++ + G+K A+ AGDL++ A
Sbjct: 71 ELVHLYFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 89 --LVALASLKHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
L + + E+I E Y++ K+ AL + + A L G E+
Sbjct: 131 AFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGE 187
Query: 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
+ G +G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 188 DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 30/168 (17%)
Query: 52 HDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA----------------LVALASL 95
HDDV+D A RRG +++ + G+K A+ AGDL++ A L + +
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKM 139
Query: 96 KHTEVI----------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNL 145
E+I E Y++ K+ AL + + A L G E+ + G +
Sbjct: 140 SEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEG---ELGEDLYNLGVTI 196
Query: 146 GLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLR 193
G YQ+ DDI+DF G +GK DL+NG+ + P++ AME+FP+ R
Sbjct: 197 GTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEAR 243
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 36/217 (16%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVIM 102
E++H ASL+HDDV+D++ RRG S++++ NK+++LAGD L++ +LV + E+I
Sbjct: 77 ELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIR 136
Query: 103 ---------------------------ECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 135
E Y KTAAL + +A A EE
Sbjct: 137 LVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEV 196
Query: 136 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM----EEFPQ 191
A G+ +G+ +Q+ DDI D+ S +GK + D+ G +T P L+A+ + + +
Sbjct: 197 AFARLLGEYIGICFQIKDDIFDYFD-SKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAE 255
Query: 192 LRAF-INSSSDNPANVDVILEYLGKSHGIQ---RTTE 224
AF + + P + ++E+ + GI+ RT E
Sbjct: 256 QIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIE 292
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 27/142 (19%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVIM 102
E H ASLIHDD+LD RR + S G A+L GD LI+++ +A S +VI
Sbjct: 72 EXXHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IAFISPYGEKVIQ 130
Query: 103 EC--------------------------YMQKTYNKTAALVSNSCKAVAYLSGQREEVAT 136
+ Y + Y KTA+L + S AY G EE+A
Sbjct: 131 DFGKAGXDXAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAE 190
Query: 137 LAFEYGKNLGLAYQLIDDILDF 158
+G LG AYQ++DDIL+F
Sbjct: 191 RFSHFGNALGTAYQIVDDILEF 212
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 86/204 (42%), Gaps = 52/204 (25%)
Query: 42 TEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS----- 94
EMIH SL+HDD+ +D+ D RRG + G +A+LAGD L+S A +A+
Sbjct: 72 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAAATKGA 131
Query: 95 --------------------------------------LKHTEVIMECYMQKTYNKTAAL 116
L H E I ++KTAAL
Sbjct: 132 PPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFI-------HHHKTAAL 184
Query: 117 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 176
+ S A L G +EE ++ +GL +Q++DDILD T +S LGK + DL
Sbjct: 185 LQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVAD 244
Query: 177 IITAPILFAMEEFPQLRAFINSSS 200
T P L +E+ + +N +
Sbjct: 245 KTTYPKLIGVEKSKEFADRLNREA 268
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 32/172 (18%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV-- 100
E++H SL+HDD++D + RR ++ V G AIL GD L + A L L E
Sbjct: 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR 143
Query: 101 -----------------------------IMECYMQKTYNKTAALVSNSCKAVAYLSGQR 131
+ EC ++ NKT AL++ + A L G
Sbjct: 144 ATRRLTKASRSLIDGQAQDISYEHRDRVSVEEC-LEMEGNKTGALLACASSIGAVLGGAD 202
Query: 132 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 183
E A +YG +LGLA+Q +DD+L G + GK + +DLR + P++
Sbjct: 203 ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVV 254
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 47/188 (25%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL-------- 92
EMIH SLIHDD+ +D+ D RRG + V G +A+LAGD L++ A+ L
Sbjct: 104 EMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEG 163
Query: 93 -ASLKHTEVIMEC----------------------------YMQKTYNKTAALVSNSCKA 123
++LK T++I + YM KT L+ S +
Sbjct: 164 KSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMH--LKKTGELIKASIMS 221
Query: 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDL---RNGIITA 180
A L+ E +G LGLA+Q+ DDILD G + LGK D +N IT
Sbjct: 222 GAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYIT- 280
Query: 181 PILFAMEE 188
+F +EE
Sbjct: 281 --IFGLEE 286
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 42/178 (23%)
Query: 39 AEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG----------------- 81
A I E+IH SLI+DD++D D RRG+ ++ G+ AIL G
Sbjct: 71 AAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKP 130
Query: 82 --------------------DLLI---SRALVALASLKHTEVIMECYMQKTYNKTAALVS 118
D+L R+ + EV ++ Y++ KT AL++
Sbjct: 131 TLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIA 190
Query: 119 NSCK-AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRN 175
+ K V +S R +A A+ +G G+A+Q+IDD+LD G GK D++
Sbjct: 191 AAAKWGVLSVSDDR-GLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKE 247
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 58/228 (25%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVM----------------GNKLAILAGDLLIS 86
E I +LIHDD++D +DTRRG ++ + G ++ILAGD +
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALV 157
Query: 87 RA----------LVALASLK------HTEVI----MECYMQKTYNKTAALVS--NSCKAV 124
A ALA + TEVI ++ Y++ N++ L N K
Sbjct: 158 WAEDXLQDSGLSAEALARTRDAWRGXRTEVIGGQLLDIYLESHANESVELADSVNRFKTA 217
Query: 125 AY-----------LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDL 173
AY ++G ++ YG ++G+A+QL DD+L G A GK + D+
Sbjct: 218 AYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDI 277
Query: 174 RNGIITAPILFAME----EFPQ----LRAFINSSSDNPANVDVILEYL 213
R G T + A++ + P+ +RA + + +P ++ VI E++
Sbjct: 278 REGKRTVLLALALQRADKQSPEAATAIRAGVGKVT-SPEDIAVITEHI 324
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVAL--ASLKHT 98
E IH SLIHDD+ D+AD RRGI +L AIL GD L + A + L A LK
Sbjct: 70 EFIHTYSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDE 129
Query: 99 EVI--------------------MECYMQKTY-----------NKTAALVSNSCKAVAYL 127
I ++C+ + +KTA L++ + K +
Sbjct: 130 IKIKLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEI 189
Query: 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 174
E + ++ G LGL +Q+ DDI+D T + GK + D+
Sbjct: 190 CELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH 236
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 36/169 (21%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALAS------ 94
EMIH SLIHDD+ +D+ D RRG + V G AILAGD L+++A ++S
Sbjct: 72 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTD 131
Query: 95 -------------LKHTEVI---------------MECYMQKTYNKTAALVSNSCKAVAY 126
H ++ +E KT AL++ + + A
Sbjct: 132 EVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAAD 191
Query: 127 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRN 175
++ + Y +LG+ +Q+ DD+LD G A LGK +DL N
Sbjct: 192 IANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLEN 240
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 39/199 (19%)
Query: 27 LILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLL 84
L+ D+ A E IH SLIHDD+ +D+ + RRG + AILAGD L
Sbjct: 59 LVGDISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDAL 118
Query: 85 ISRALVALA----------------------------------SLKHTEVIMECYMQKTY 110
+ A L+ S ++ + + Q
Sbjct: 119 QTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHV 178
Query: 111 NKTAALVSNSCKAVAYLSGQ--REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKA 168
+KT AL+ S + A +GQ E++A L Y +GLA+Q+ DDI+D T + +LGK
Sbjct: 179 HKTGALIKASVRMGALSTGQVKPEQLAKLD-AYAHAIGLAFQVQDDIIDLTSDTETLGKT 237
Query: 169 SLTDLRNGIITAPILFAME 187
+D T P L ++
Sbjct: 238 QFSDAEANKATYPKLLGLD 256
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 39 AEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHT 98
A I E++HV SL+ DDV+D D RRGI + ++ G+ AI+A D LI+ ++ +L
Sbjct: 74 AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGAD 133
Query: 99 EVI----------------MECYMQKTYN-KTAALVSNSCKAVAYLSGQREEVATLAFEY 141
V +E K KTA L+ + + G+RE + T A +
Sbjct: 134 VVTYLADVAQRLSVGQALDLEGERDKAAEFKTAPLIEAALVMPLVILGRRELIET-AKKL 192
Query: 142 GKNLGLAYQLIDDILD 157
G LG+ YQ DD D
Sbjct: 193 GTKLGILYQYSDDYSD 208
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 32/201 (15%)
Query: 36 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95
Q I E+TEM+H ASL+ DD+ D++ RRG S+ G I + + + L + +L
Sbjct: 48 QIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTL 107
Query: 96 KHTEVI---------------MECYMQKTY-------------NKTAALVSNSCKAVAYL 127
H + + ++ Y + Y KT L + +
Sbjct: 108 DHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLF 167
Query: 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 187
S +E++ L LGL +Q+ DD + S K+ DL G + P + A+
Sbjct: 168 SDYKEDLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW 223
Query: 188 EFPQLRAFINSSSDNPANVDV 208
P+ N N+D+
Sbjct: 224 SRPESTQVQNILRQRTENIDI 244
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 38 IAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95
+A E+ H ASLIHDD+ +D+AD RRG S G +A+LAGD L A ++ +
Sbjct: 71 VAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI 130
Query: 96 KHTEVIME----CY-------MQKTYNKTAALVSNSC--KAVAYLSGQREEVATLAFEY- 141
++ + E Y M + + VS + A+ +G A AF +
Sbjct: 131 GNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTG-----ALFAFCFS 185
Query: 142 ----------------GKNLGLAYQLIDDILDFTGTSASLGK 167
G+ G+A+Q+ DD+ D G+ +GK
Sbjct: 186 APFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSFEKVGK 227
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 41/161 (25%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 100
E IH SLIHDD+ D+ D RRG + V G +A+LAGD L+S A LAS +EV
Sbjct: 82 EXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEV 141
Query: 101 I---------------------------------------MECYMQKTYNKTAALVSNSC 121
+E +KTAAL+ S
Sbjct: 142 SPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA 201
Query: 122 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 162
+ G +E ++ + +GL +Q++DDILD T +S
Sbjct: 202 VLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS 242
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 38 IAEITEMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95
+A EMIH SLIHDD+ D RRG + V G AILAGD L++ A L+
Sbjct: 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135
Query: 96 KHTEVIMECYMQK---------------------------------TYNKTAALVSNSCK 122
+ MQ+ KT AL+ +
Sbjct: 136 QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALI 195
Query: 123 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 167
A L+ Q EEV L ++ + GLA+Q+ DD+LD T T A LGK
Sbjct: 196 AGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGK 240
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 39 AEITEMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96
A E IH SLIHDD+ D RRG+ + G AILAGD L + A L+
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 97 HTEV--------IME----------CYMQK------------------TYNKTAALVSNS 120
EV I E C Q +KT AL+ +
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 189
Query: 121 CKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 179
+ A +G + A + Y +++GLA+Q+ DDILD G +A+LGK D + G T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 180 APILFAMEE 188
P L +E+
Sbjct: 250 YPALLGLEQ 258
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 39 AEITEMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96
A E IH SLIHDD+ D RRG+ + G AILAGD L + A L+
Sbjct: 94 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAN 153
Query: 97 HTEV--------IME----------CYMQK------------------TYNKTAALVSNS 120
EV I E C Q +KT AL+ +
Sbjct: 154 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 213
Query: 121 CKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 179
+ A +G + A + Y +++GLA+Q+ DDILD G +A+LGK D + G T
Sbjct: 214 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 273
Query: 180 APILFAMEE 188
P L +E+
Sbjct: 274 YPALLGLEQ 282
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 39 AEITEMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96
A E IH SLIHDD+ D RRG+ + G AILAGD L + A L+
Sbjct: 71 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 130
Query: 97 HTEV--------IME----------CYMQK------------------TYNKTAALVSNS 120
EV I E C Q +KT AL+ +
Sbjct: 131 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAA 190
Query: 121 CKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 179
+ A +G + A + Y +++GLA+Q+ DDILD G +A+LGK D + G T
Sbjct: 191 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 250
Query: 180 APILFAMEE 188
P L +E+
Sbjct: 251 YPALLGLEQ 259
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 37/175 (21%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 100
E++H SLIHDD+ +D+ RRG + G +A LAGD L++ A L +
Sbjct: 80 ELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPAT 139
Query: 101 IMECYMQKT---------------------------------YNKTAALVSNSCKAVAYL 127
+ +Q KT AL+ + +A L
Sbjct: 140 MQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLIL 199
Query: 128 SGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181
GQ E A+ ++ GLA+Q+ DDILD + A +GKA+ D T P
Sbjct: 200 -GQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYP 253
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 44/196 (22%)
Query: 38 IAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGD------------- 82
IA E+ H SLIHDD+ +D+ D RRG S AIL GD
Sbjct: 75 IAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMR 134
Query: 83 ---LLISRALVA---------------------LASLKHTEVIMECYMQKTYNKTAALVS 118
LL + +VA L+ L + V E + KT L+
Sbjct: 135 LSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLIL 194
Query: 119 NSCKAVAYLSGQRE---EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRN 175
+ V L+ Q E ++ + YGK++GL +Q+ DD LD + LGK +D N
Sbjct: 195 ACFEMV--LAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQAN 252
Query: 176 GIITAPILFAMEEFPQ 191
T LF ++ +
Sbjct: 253 QKTTFATLFNKQQLEE 268
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 41/163 (25%)
Query: 43 EMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGD------------------ 82
E +H SL+HDD+ +D+ D RRG+ ++ + A+LAGD
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 131
Query: 83 ------------------LLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAV 124
++ +AL A + ++ ++ KT AL+S + +A
Sbjct: 132 ENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAG 191
Query: 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 167
A L+G T Y LGLA+Q+ DDILD G + GK
Sbjct: 192 AILAGADRGPLT---AYATALGLAFQIADDILDVEGNEEAAGK 231
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 53/195 (27%)
Query: 39 AEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA--- 93
A E IH SLIHDD+ +DD + RRG + AIL GD L + A LA
Sbjct: 76 ASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGD 135
Query: 94 ----------------------------------------SLKHTEVIMECYMQKTYNKT 113
SL+ E I NKT
Sbjct: 136 LSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHR-------NKT 188
Query: 114 AALVSNSCKAVAYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTD 172
AL+ + + A +G++ + Y + +GLA+Q+ DDILD + +LGK +D
Sbjct: 189 GALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD 248
Query: 173 LRNGIITAPILFAME 187
T P L +E
Sbjct: 249 QELNKSTYPALLGLE 263
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 38 IAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA-S 94
IA E +H SLIHDD+ +D+A RR +L + A+L GD L + + L+ +
Sbjct: 86 IALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNA 145
Query: 95 LKHTEVIME---------------------CYMQKT-----------YNKTAALVSNSCK 122
L + +I+E CY + T +KTA L+S S
Sbjct: 146 LLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLI 205
Query: 123 AVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 172
SG + EE+ +G +GL +Q++DDI+D T GK + D
Sbjct: 206 MGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD 256
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 38 IAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA-S 94
IA E +H SLIHDD+ +D+A RR +L + A+L GD L + + L+ +
Sbjct: 79 IALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNA 138
Query: 95 LKHTEVIME---------------------CYMQKT-----------YNKTAALVSNSCK 122
L + +I+E CY + T +KTA L+S S
Sbjct: 139 LLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLI 198
Query: 123 AVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 172
SG + EE+ +G +GL +Q++DDI+D T GK + D
Sbjct: 199 MGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD 249
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 112 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 171
KT AL+ +C+A A ++G + +G+ +GL++QL DD+LD T +A++GKA+
Sbjct: 221 KTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGK 280
Query: 172 DLRNG 176
D G
Sbjct: 281 DAARG 285
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALA-----SLKH 97
E+ L+HDD+ D ++ RRG +L + LA+ AGD + + LA L
Sbjct: 69 ELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFP 128
Query: 98 TEVIMECY---MQKTYNKTAALV-----------SNSCKAVAYLSGQREEVATL------ 137
EV++E + + Y + L+ + + VA+ + VA L
Sbjct: 129 PEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALL 188
Query: 138 -------AFEYGK-NLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF 189
A+E G LG A+Q++DD+L+ G A GK DL G T +L +EE
Sbjct: 189 AGKTPPAAYEEGGLRLGTAFQIVDDVLNLEGGEAY-GKERAGDLYEGKRTLILLRFLEEA 247
Query: 190 P 190
P
Sbjct: 248 P 248
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 59/150 (39%), Gaps = 48/150 (32%)
Query: 42 TEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI 101
EMIH SLIHDDV G +A+LAGD L+S A LAS +EV
Sbjct: 81 VEMIHTMSLIHDDV----------------YGEDVAVLAGDALLSFAFEHLASATSSEVS 124
Query: 102 --------------------------------MECYMQKTYNKTAALVSNSCKAVAYLSG 129
+E +KTAAL+ S + G
Sbjct: 125 PARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHLKFIHLHKTAALLEASAVLGGIIGG 184
Query: 130 QREEVATLAFEYGKNLGLAYQLIDDILDFT 159
+E ++ + +GL +Q++DDILD T
Sbjct: 185 GSDEEIERLRKFARCIGLLFQVVDDILDVT 214
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 28 ILDLRRRQQCI-AEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLIS 86
+++L + Q I ++I E++H +SL+ DD+ D+A RRG + + G I + +
Sbjct: 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYF 113
Query: 87 RALVALASLKHTEVI-----------------------------------MECYMQKTYN 111
RA+ ++ L E + E Y+ N
Sbjct: 114 RAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMN 173
Query: 112 KTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLT 171
KT L + + + LS +L + LG+ YQ+ DD L+ S K
Sbjct: 174 KTGGLFRLTLRLMEALSPSSHHGHSLV-PFINLLGIIYQIRDDYLNLKDFQMSSEKGFAE 232
Query: 172 DLRNGIITAPILFAM 186
D+ G ++ PI+ A+
Sbjct: 233 DITEGKLSFPIVHAL 247
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 43 EMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 100
E+IH SL+HDD+ D RRG + AILAGD L S A AL ++
Sbjct: 81 ELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDA 140
Query: 101 IMECYMQKT------------------------------------YNKTAALVSNSCKAV 124
E ++ +KT AL+ S
Sbjct: 141 SAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILG 200
Query: 125 AYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 183
A SG+ E+ A + Y + +GLA+Q+ DDILD +A+LGK D+ T P L
Sbjct: 201 ALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPAL 260
Query: 184 FAM 186
+
Sbjct: 261 LGL 263
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 43 EMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 100
E+IH SL+HDD+ D RRG + AILAGD L S A AL ++
Sbjct: 74 ELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDA 133
Query: 101 IMECYMQKT------------------------------------YNKTAALVSNSCKAV 124
E ++ +KT AL+ S
Sbjct: 134 SAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILG 193
Query: 125 AYLSGQREEVATLAFE-YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 183
A SG+ E+ A + Y + +GLA+Q+ DDILD +A+LGK D+ T P L
Sbjct: 194 ALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPAL 253
Query: 184 FAM 186
+
Sbjct: 254 LGL 256
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRAL------------- 89
E++H ASL DD++D TRRG + V GN+ I + LI AL
Sbjct: 79 EILHSASLALDDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALN 138
Query: 90 VALASLKHTEV--IMECYMQKTYN-----KTAALVSNSCKAVAYLSGQREEVATLAFEYG 142
++ K T V + + Y Y KT +L S AY S + + G
Sbjct: 139 TSIELEKDTSVGALRDMYDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQM-LDVG 197
Query: 143 KNLGLAYQLIDDILDF 158
K LG+ YQ+IDD +D+
Sbjct: 198 KYLGIIYQVIDDFVDY 213
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 43 EMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRAL------------- 89
E++H ASL D++D TRRG + V GN+ I + LI AL
Sbjct: 79 EILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALN 138
Query: 90 VALASLKHTEV--IMECYMQKTYN-----KTAALVSNSCKAVAYLSGQREEVATLAFEYG 142
++ K T V + + Y Y KT +L S AY S + + G
Sbjct: 139 TSIELWKDTSVGALRDMYDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQM-LDVG 197
Query: 143 KNLGLAYQLIDDILDF 158
K LG+ YQ+IDD +D+
Sbjct: 198 KYLGIIYQVIDDFVDY 213
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 111 NKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGK 167
KT AL+S + +A A L+G T Y LGLA+Q+ DDILD G + GK
Sbjct: 177 GKTGALISFAAQAGAILAGADRGPLT---AYATALGLAFQIADDILDVEGNEEAAGK 230
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 145 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSD 201
+G +Q+ DD LD G S GK +D++N +T P++ E E +++ N +
Sbjct: 278 MGEYFQIHDDYLDIFGDSTKTGKVG-SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336
Query: 202 NPANVDVILEYLGKSHGIQRTTE 224
N A V VI + L + + I++ E
Sbjct: 337 NLACVKVI-DSLYEQYKIRKHYE 358
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 145 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME---EFPQLRAFINSSSD 201
+G +Q+ DD LD G S GK +D++N +T P++ E E +++ N +
Sbjct: 279 MGEYFQIHDDYLDIFGDSTKTGKVG-SDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 337
Query: 202 NPANVDVILEYLGKSHGIQRTTE 224
N A V VI + L + + I++ E
Sbjct: 338 NLACVKVI-DSLYEQYKIRKHYE 359
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 66/183 (36%), Gaps = 39/183 (21%)
Query: 43 EMIHVASLIHDDVLDDADT--RRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEV 100
E IHV SLIHDD+ D RRG + AILAGD L + A LA V
Sbjct: 80 EFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAV 139
Query: 101 IME--CYMQKTY----------------------------------NKTAALVSNSCK-A 123
E M +T KT AL+ S + A
Sbjct: 140 PAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLA 199
Query: 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 183
G E Y K +GLA+Q+ DDILD + +LGK D + P L
Sbjct: 200 CLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPAL 259
Query: 184 FAM 186
+
Sbjct: 260 LGL 262
>pdb|2O1O|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2O1O|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Risedronate.
pdb|2Q58|A Chain A, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
pdb|2Q58|B Chain B, Cryptosporidium Parvum Putative Polyprenyl Pyrophosphate
Synthase (Cgd4_2550) In Complex With Zoledronate
Length = 368
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRAL-----VAL 92
+ + E I LI DD++D RRG V G AI D+ + L L
Sbjct: 100 LGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAI--NDIFFLKMLSLSLIFEL 157
Query: 93 ASLKHTEVIMECYMQKTYNKT 113
+S+ +++M+ +QK YN++
Sbjct: 158 SSVFGNDIVMK--IQKIYNES 176
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRRG 64
+ E+ ASL+ DD++D + TRRG
Sbjct: 102 VGWCIELFQAASLVADDIMDQSLTRRG 128
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRRG 64
+ E+ ASL+ DD++D + TRRG
Sbjct: 102 VGWCIELFQAASLVADDIMDQSLTRRG 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,516,951
Number of Sequences: 62578
Number of extensions: 230539
Number of successful extensions: 715
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 98
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)