Query 024463
Match_columns 267
No_of_seqs 191 out of 1124
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 3E-61 6.6E-66 449.2 29.3 266 2-267 130-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 2.8E-60 6E-65 432.7 27.3 246 2-267 50-322 (322)
3 PLN02857 octaprenyl-diphosphat 100.0 6.4E-60 1.4E-64 440.4 26.5 249 2-267 141-416 (416)
4 CHL00151 preA prenyl transfera 100.0 7.3E-60 1.6E-64 430.4 26.3 245 2-266 51-322 (323)
5 TIGR02748 GerC3_HepT heptapren 100.0 4.1E-59 8.8E-64 424.8 27.8 241 2-267 49-319 (319)
6 PRK10888 octaprenyl diphosphat 100.0 2.3E-58 5E-63 420.1 27.9 243 2-267 50-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 6.4E-58 1.4E-62 417.2 26.7 246 2-267 48-322 (322)
8 PRK10581 geranyltranstransfera 100.0 3E-53 6.5E-58 382.6 23.2 211 2-267 50-299 (299)
9 KOG0776 Geranylgeranyl pyropho 100.0 5.6E-53 1.2E-57 382.8 21.6 236 21-265 115-384 (384)
10 PF00348 polyprenyl_synt: Poly 100.0 5.8E-51 1.3E-55 361.8 15.3 207 2-226 19-259 (260)
11 cd00685 Trans_IPPS_HT Trans-Is 100.0 1.1E-49 2.3E-54 353.5 23.0 205 2-265 24-259 (259)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 1.9E-39 4.1E-44 283.1 22.9 204 3-265 5-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 2E-36 4.3E-41 255.6 18.3 209 32-244 54-293 (322)
14 KOG0711 Polyprenyl synthetase 100.0 2E-35 4.3E-40 259.9 19.6 238 25-267 70-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 1.1E-20 2.5E-25 161.5 23.4 199 36-262 13-241 (243)
16 PF07307 HEPPP_synt_1: Heptapr 96.6 0.053 1.2E-06 46.7 12.2 81 31-116 31-114 (212)
17 PF00494 SQS_PSY: Squalene/phy 95.5 0.26 5.6E-06 43.5 11.9 117 102-244 112-229 (267)
18 PLN02632 phytoene synthase 95.4 0.74 1.6E-05 42.5 14.7 118 102-244 161-280 (334)
19 TIGR03464 HpnC squalene syntha 94.8 1.4 3E-05 39.2 14.3 114 102-244 107-220 (266)
20 cd00683 Trans_IPPS_HH Trans-Is 94.7 1.6 3.4E-05 38.6 14.6 115 102-244 114-228 (265)
21 TIGR03465 HpnD squalene syntha 91.9 2.7 5.9E-05 37.2 11.4 114 102-244 106-219 (266)
22 TIGR01559 squal_synth farnesyl 90.7 1.4 3E-05 40.8 8.4 85 138-244 166-250 (336)
23 PRK12884 ubiA prenyltransferas 90.7 5 0.00011 35.7 11.9 142 34-187 38-198 (279)
24 PRK12882 ubiA prenyltransferas 89.1 14 0.00031 32.8 13.5 142 35-188 40-201 (276)
25 TIGR01474 ubiA_proteo 4-hydrox 86.4 11 0.00023 33.8 11.0 58 35-92 42-104 (281)
26 PRK09573 (S)-2,3-di-O-geranylg 85.4 26 0.00057 31.2 14.4 56 35-90 39-97 (279)
27 PRK07566 bacteriochlorophyll/c 83.4 21 0.00045 32.6 11.5 51 40-90 72-125 (314)
28 TIGR02056 ChlG chlorophyll syn 81.6 29 0.00064 31.4 11.8 51 39-89 60-113 (306)
29 PRK12848 ubiA 4-hydroxybenzoat 81.0 37 0.00081 30.3 12.2 140 36-187 45-205 (282)
30 PRK12872 ubiA prenyltransferas 80.8 38 0.00083 30.0 12.2 33 145-188 173-205 (285)
31 PRK12870 ubiA 4-hydroxybenzoat 79.4 37 0.00081 30.5 11.7 58 35-92 48-110 (290)
32 PRK12871 ubiA prenyltransferas 76.8 32 0.00069 31.2 10.4 47 44-91 53-113 (297)
33 PRK12883 ubiA prenyltransferas 75.2 34 0.00074 30.4 10.1 55 35-89 39-96 (277)
34 COG1562 ERG9 Phytoene/squalene 74.6 24 0.00051 32.0 8.9 87 137-245 153-239 (288)
35 PF01040 UbiA: UbiA prenyltran 73.2 59 0.0013 27.8 12.6 140 35-186 25-188 (257)
36 COG0382 UbiA 4-hydroxybenzoate 68.3 89 0.0019 27.9 13.6 145 33-188 47-211 (289)
37 PF06783 UPF0239: Uncharacteri 65.0 6.8 0.00015 28.7 2.6 28 132-159 15-42 (85)
38 TIGR01475 ubiA_other putative 64.2 1.1E+02 0.0023 27.3 11.5 52 34-85 37-93 (282)
39 PRK10888 octaprenyl diphosphat 64.2 1E+02 0.0022 28.2 10.9 45 128-184 59-103 (323)
40 PRK12847 ubiA 4-hydroxybenzoat 61.7 1.2E+02 0.0026 27.0 11.1 58 35-92 47-109 (285)
41 TIGR02748 GerC3_HepT heptapren 60.4 1.3E+02 0.0029 27.3 11.0 47 127-185 57-103 (319)
42 PRK10581 geranyltranstransfera 57.1 30 0.00064 31.4 6.0 62 35-96 205-278 (299)
43 PLN00012 chlorophyll synthetas 56.8 1.5E+02 0.0033 27.9 10.8 46 36-81 126-174 (375)
44 TIGR01476 chlor_syn_BchG bacte 56.2 1.5E+02 0.0032 26.4 11.8 50 39-88 44-96 (283)
45 cd00685 Trans_IPPS_HT Trans-Is 55.7 1.4E+02 0.0031 26.1 10.5 41 133-185 39-79 (259)
46 PF00348 polyprenyl_synt: Poly 55.6 1.4E+02 0.0031 26.1 10.5 50 124-185 24-73 (260)
47 PRK12878 ubiA 4-hydroxybenzoat 55.1 1.7E+02 0.0036 26.7 12.3 59 35-93 74-137 (314)
48 PRK13595 ubiA prenyltransferas 47.9 2.2E+02 0.0047 25.9 10.4 58 117-187 155-212 (292)
49 TIGR01476 chlor_syn_BchG bacte 46.5 44 0.00096 29.8 5.4 53 36-88 164-217 (283)
50 PRK13362 protoheme IX farnesyl 44.9 2.4E+02 0.0052 25.6 11.4 59 35-93 49-112 (306)
51 PLN02809 4-hydroxybenzoate non 41.3 2.7E+02 0.0058 25.1 11.2 61 35-95 47-112 (289)
52 PRK12874 ubiA prenyltransferas 39.6 2.8E+02 0.0061 24.9 11.0 56 33-88 47-107 (291)
53 TIGR02749 prenyl_cyano solanes 39.3 3E+02 0.0065 25.1 10.0 37 137-185 71-107 (322)
54 TIGR02056 ChlG chlorophyll syn 38.0 84 0.0018 28.5 5.9 55 35-89 185-240 (306)
55 CHL00151 preA prenyl transfera 34.3 3.2E+02 0.007 24.8 9.1 37 137-185 72-108 (323)
56 cd00687 Terpene_cyclase_nonpla 33.4 3.4E+02 0.0073 23.9 10.2 57 102-161 160-221 (303)
57 PRK13105 ubiA prenyltransferas 33.1 85 0.0019 28.2 5.0 33 145-188 172-204 (282)
58 PRK12888 ubiA prenyltransferas 32.7 3.6E+02 0.0079 24.1 14.1 54 33-86 39-97 (284)
59 cd00868 Terpene_cyclase_C1 Ter 30.8 3.5E+02 0.0076 23.3 13.6 59 102-161 153-215 (284)
60 PRK13591 ubiA prenyltransferas 30.0 4.4E+02 0.0094 24.1 9.8 28 39-66 64-91 (307)
61 PRK12886 ubiA prenyltransferas 29.8 4.1E+02 0.0089 23.8 10.7 48 34-81 43-95 (291)
62 PRK13106 ubiA prenyltransferas 27.7 4.6E+02 0.01 23.7 12.3 48 34-81 50-102 (300)
63 PRK12878 ubiA 4-hydroxybenzoat 27.4 2.1E+02 0.0046 26.0 6.6 76 102-181 30-119 (314)
64 PRK06080 1,4-dihydroxy-2-napht 27.3 4.4E+02 0.0096 23.3 8.8 85 102-186 3-92 (293)
65 PRK13105 ubiA prenyltransferas 26.5 2E+02 0.0043 25.9 6.2 60 34-93 161-221 (282)
66 PRK12869 ubiA protoheme IX far 26.1 4.2E+02 0.0091 23.5 8.2 58 34-91 37-99 (279)
67 PRK07566 bacteriochlorophyll/c 24.3 1.8E+02 0.0039 26.4 5.6 56 34-89 190-246 (314)
68 PRK12887 ubiA tocopherol phyty 23.7 5.5E+02 0.012 23.2 11.3 134 44-188 60-226 (308)
69 PLN02857 octaprenyl-diphosphat 22.9 2.3E+02 0.005 27.1 6.1 26 33-58 288-313 (416)
70 PRK04375 protoheme IX farnesyl 22.8 3.8E+02 0.0082 24.0 7.3 82 102-186 10-96 (296)
71 PRK12871 ubiA prenyltransferas 22.6 5.7E+02 0.012 23.0 8.6 75 102-179 5-95 (297)
72 COG0142 IspA Geranylgeranyl py 22.3 2.1E+02 0.0046 26.1 5.7 36 138-185 71-106 (322)
73 PRK12873 ubiA prenyltransferas 22.0 6E+02 0.013 23.0 10.2 61 35-95 46-111 (294)
74 PRK12875 ubiA prenyltransferas 21.0 2.3E+02 0.005 25.4 5.5 42 43-84 175-217 (282)
75 TIGR01473 cyoE_ctaB protoheme 20.4 2.8E+02 0.0061 24.5 6.0 81 104-186 2-87 (280)
76 PRK13387 1,4-dihydroxy-2-napht 20.3 2.4E+02 0.0053 25.7 5.6 85 102-186 3-93 (317)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=3e-61 Score=449.20 Aligned_cols=266 Identities=71% Similarity=1.021 Sum_probs=235.6
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++|+++++|...+...+..-.....++.+++++++|+++|+||+||||||||||++++|||+||+|.+||++.||++|
T Consensus 130 ~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaG 209 (422)
T PLN02890 130 TVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAG 209 (422)
T ss_pred HHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHH
Confidence 47999999998532211000000112345678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|+..++...+.+++ +++|++++.+|||+||+.+|++||+++|++++.
T Consensus 210 D~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~ 289 (422)
T PLN02890 210 DFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEV 289 (422)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHH
Confidence 99999999999887665433 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
.+.+++||+++|+||||+||++||+++++.+||+.++||++||+|+|++++++..+++++++.+...++++++++++++.
T Consensus 290 ~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~ 369 (422)
T PLN02890 290 AVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLG 369 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888999888888899999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++|++++|+.++++|.++|.+.|+.+|+++.++....|+.|..|++++++|+|
T Consensus 370 ~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 370 KSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999988632222368999999999999987
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=2.8e-60 Score=432.73 Aligned_cols=246 Identities=44% Similarity=0.689 Sum_probs=228.7
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|.. ++.++..+.+|+++|++|+||||||||||+|+.|||+||+|.+||+++||++|
T Consensus 50 ~l~ll~~~~~~~~--------------~~~~~~~~~~A~avEliH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~G 115 (322)
T TIGR02749 50 AIVLLVSRATAEQ--------------QELTPRHRRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAG 115 (322)
T ss_pred HHHHHHHHHcCCC--------------ccccHHHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHH
Confidence 3688888888742 12457789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.+++.++.+++ .++|++++.+|||+||+.||++|++++|.+++.
T Consensus 116 D~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~ 195 (322)
T TIGR02749 116 DFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQV 195 (322)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHH
Confidence 99999999999887654332 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
++.+++||+++|++|||+||++|++++++.+|||.++||++||+|+|++++++..+.+.+++.+...++++++++++++.
T Consensus 196 ~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~ 275 (322)
T TIGR02749 196 ANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVR 275 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888899888888889999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++|+++++++++++|.++|++.|+.+|+++ .++.|..|++++++|++
T Consensus 276 ~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 276 KSGGIKKARELAKEQAQLALQSLSFLPPSP------PREALKELVHFVLSRLY 322 (322)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999988 89999999999999974
No 3
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=6.4e-60 Score=440.44 Aligned_cols=249 Identities=40% Similarity=0.642 Sum_probs=230.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|.... ..+..++++++|+++|+||+||||||||||+|++|||+||+|.+||+.+|||+|
T Consensus 141 ~Lvll~a~a~g~~~g-----------~~~~~~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaG 209 (416)
T PLN02857 141 ALVFLVSRATAELAG-----------LKELTTEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAG 209 (416)
T ss_pred HHHHHHHHHhccccC-----------CCcchHHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHH
Confidence 478899999874110 012457889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.++++++++++ +++|++++++|||+||+.+|++|++++|++++.
T Consensus 210 D~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~ 289 (416)
T PLN02857 210 DFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSV 289 (416)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999887654432 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
.+.+.+||++||++|||+||++||+++++.+||+.++||++||+|+|++++++..+++++++.+...+++++++++++++
T Consensus 290 ~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~ 369 (416)
T PLN02857 290 KEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVN 369 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999888888899999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++|+++++++++++|.++|++.|+.+|.++ .++.|..+++++++|++
T Consensus 370 ~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~------~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 370 EGGGIERAQELAKEKADLAIQNLECLPRGA------FRSSLEDMVDYNLERIY 416 (416)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999988 88999999999999975
No 4
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=7.3e-60 Score=430.41 Aligned_cols=245 Identities=40% Similarity=0.655 Sum_probs=226.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|...+ ....++.+|+++|++|+||||||||||+|++|||+||+|.+||++.||++|
T Consensus 51 ~L~ll~~~~~~~~~~--------------~~~~~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~G 116 (323)
T CHL00151 51 AIVLLVAKATGGNME--------------IKTSQQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAG 116 (323)
T ss_pred HHHHHHHHHcCCCcc--------------ccHHHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCCcchhhhH
Confidence 368888888875221 335678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.++...+++.. +++|++++.+|||+||++||.+|++++|.+++.
T Consensus 117 D~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~ 196 (323)
T CHL00151 117 DFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKD 196 (323)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999998877654321 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
.+.+++||+++|++|||+||++|++++++.+|||.|+||++||+|||++++++..+++.+++.+...++++++++++++.
T Consensus 197 ~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 276 (323)
T CHL00151 197 HNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIK 276 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888877778889999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
++|++++|++.+++|.++|++.|+.+|.++ .++.|..+++++++|+
T Consensus 277 ~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~ 322 (323)
T CHL00151 277 ETNGIEKAKDLALEHMQAAIQCLKFLPPSS------AKDSLIEIANFIINRL 322 (323)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999987 8899999999999986
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=4.1e-59 Score=424.84 Aligned_cols=241 Identities=32% Similarity=0.517 Sum_probs=218.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++++|+++|+||+||||||||+|+|+.|||+||+|.+||+++||++|
T Consensus 49 ~L~ll~~~~~~~-----------------~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~G 111 (319)
T TIGR02748 49 VFVLLAGKFGDY-----------------DLDAIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTG 111 (319)
T ss_pred HHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHH
Confidence 367777777653 346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||++++++.++++++++++ +++|++++.+|||+||++||.+|++++|.+++.
T Consensus 112 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~ 191 (319)
T TIGR02748 112 DYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAI 191 (319)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999887654322 678999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh---HHHHHhccCCCChhhHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP---QLRAFINSSSDNPANVDVILE 211 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~---~~~~~l~~~~~~~~~~~~i~~ 211 (267)
++.+++||+++|++|||+||++||+++++.+|||.++||++||+|+|++++++..+ .+..++... ++++++.+++
T Consensus 192 ~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~--~~~~~~~~~~ 269 (319)
T TIGR02748 192 VKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEET--TAEEMEPLIE 269 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCC--CHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998543 344444433 5778999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 212 YLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 212 ~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++.++|++++|+.++++|.++|.+.|+.+|.++ .++.|..+++++++|++
T Consensus 270 ~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 270 EVKKSDAIEYAYAVSDRYLKKALELLDGLPDGR------AKKPLQEIAKYIGKRKY 319 (319)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999988 89999999999999975
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2.3e-58 Score=420.09 Aligned_cols=243 Identities=33% Similarity=0.526 Sum_probs=217.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++|+++++|. ..+..+++|+++|++|+||||||||+|+|++|||+||+|.+||+++||++|
T Consensus 50 ~l~ll~~~~~g~-----------------~~~~~~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~G 112 (323)
T PRK10888 50 MIAVLAARAVGY-----------------QGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVG 112 (323)
T ss_pred HHHHHHHHHcCC-----------------ChHHHHHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHH
Confidence 367788888764 346689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||++.+++.+++.++.+++ +++|++++.+|||+||++||.+|++++|.+++.
T Consensus 113 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~ 192 (323)
T PRK10888 113 DFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQ 192 (323)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999877654322 578999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-hHHHHHhcc---CCCChhhHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINS---SSDNPANVDVIL 210 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~~~~~~l~~---~~~~~~~~~~i~ 210 (267)
++.+++||+++|++|||+||++||+++++.+||+.|+||++||+|||++++++.. ++.++.+.. .....++++.++
T Consensus 193 ~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 272 (323)
T PRK10888 193 EKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVL 272 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999864 333333322 122356789999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 211 EYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 211 ~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++.++|+++++++++++|.++|++.|+.+|.++ .++.|..+++++++|++
T Consensus 273 ~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 273 EAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP------WREALIGLAHIAVQRDR 323 (323)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999999988 89999999999999974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-58 Score=417.18 Aligned_cols=246 Identities=38% Similarity=0.527 Sum_probs=221.0
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++| ++.. ...++++.+|++||++|++|||||||||+|++|||+||+|.+||++.||++|
T Consensus 48 ~l~l~~~~~~~-~~~~------------~~~~~~~~~aaavEliH~~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaG 114 (322)
T COG0142 48 LLVLLAAEALG-IDLE------------TGGNDALDLAAAIELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAG 114 (322)
T ss_pred HHHHHHHHHcC-CCcc------------cchhhHHHHHHHHHHHHHHHHHHhhcccCCCccCCCCCchhHhccHHHHHHH
Confidence 37899999998 3321 0167899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--hhHH--------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHH
Q 024463 82 DLLISRALVALASLKH--TEVI--------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREE 133 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~--~~~~--------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~ 133 (267)
|+|++.||+.+++..+ ++.. +++|++|+++|||+||++++++|+++++++++
T Consensus 115 D~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~ 194 (322)
T COG0142 115 DALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEE 194 (322)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999876 3322 58899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChH-HHHHhccCCCChhhHHHHHHH
Q 024463 134 VATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ-LRAFINSSSDNPANVDVILEY 212 (267)
Q Consensus 134 ~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~-~~~~l~~~~~~~~~~~~i~~~ 212 (267)
..+.+..||+++|++|||+||++|++++++.+||++|+|+++||+|||++++++..++ .. .+........++++++++
T Consensus 195 ~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 273 (322)
T COG0142 195 LLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANEDQK-LLRILLEGGGEVEEALEL 273 (322)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCchhhH-HHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997543 22 333322222299999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 213 LGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 213 i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+.++|+++++...+..|.++|++.|+.+|.++ .++.|..+++++++|++
T Consensus 274 ~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~------~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 274 LRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE------AKEALLELADFIIKRKY 322 (322)
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999667 89999999999999974
No 8
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=3e-53 Score=382.57 Aligned_cols=211 Identities=30% Similarity=0.421 Sum_probs=188.5
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|++|+|||||||| ||+|++|||+||+|.+||++.||+
T Consensus 50 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl 112 (299)
T PRK10581 50 FLVYATGQMFGV-----------------STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAIL 112 (299)
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHH
Confidence 366777777763 3467889999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCh--------hHH----------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLKHT--------EVI----------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~~--------~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||||++.|++.++....+ +.+ .++|++|+.+|||+||.+||.+
T Consensus 113 ~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ 192 (299)
T PRK10581 113 AGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRAAVRL 192 (299)
T ss_pred HHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999988764321 000 5689999999999999999999
Q ss_pred HHHHhCCCH-HHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCC
Q 024463 124 VAYLSGQRE-EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDN 202 (267)
Q Consensus 124 ga~la~~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~ 202 (267)
|++++|.++ +.++.+.+||+++|++|||+||++|++++++.+||+.++|+++||+|||++++
T Consensus 193 gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~----------------- 255 (299)
T PRK10581 193 GALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLG----------------- 255 (299)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHH-----------------
Confidence 999999864 57889999999999999999999999999999999999999999999999994
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++++++.+++|.++|++.|+.+|.++. .++.|..+++++++|+|
T Consensus 256 ----------------~e~a~~~a~~~~~~A~~~l~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 256 ----------------LEQARKKARDLIDDARQSLDQLAAQSL-----DTSALEALANYIIQRDK 299 (299)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHhCcCCch-----hHHHHHHHHHHHHhccC
Confidence 467889999999999999999998761 37899999999999986
No 9
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.6e-53 Score=382.79 Aligned_cols=236 Identities=45% Similarity=0.631 Sum_probs=224.7
Q ss_pred Cccccchhh-hhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 21 NVLGNTLIL-DLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 21 ~~l~~~~~~-~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
-.++|+.++ |+...+.++|+++||||++||||||| ||++++|||+||.|..||+++||++||||+++|++.++.+.|
T Consensus 115 ~~~~~e~~~~g~~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n 194 (384)
T KOG0776|consen 115 CLAACELVGSGDESSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLEN 194 (384)
T ss_pred hhhHHHhccccccHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccC
Confidence 456788888 89999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred hhHH-------------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 024463 98 TEVI-------------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLG 146 (267)
Q Consensus 98 ~~~~-------------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG 146 (267)
+.++ +++|+.+..+|||+|++.+|++|++++|.+++.++.+++||+++|
T Consensus 195 ~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lG 274 (384)
T KOG0776|consen 195 PVVVELMASAIADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLG 274 (384)
T ss_pred chHHHHHHHHHHHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6433 678999999999999999999999999999999999999999999
Q ss_pred HHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHH
Q 024463 147 LAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELA 226 (267)
Q Consensus 147 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~ 226 (267)
++||+.||++|++...+.+||+.+.|+..|+.|+|+++++++.|++.+.+.+.+.++.+.++..+.+. ++..|..++
T Consensus 275 L~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la 351 (384)
T KOG0776|consen 275 LAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLA 351 (384)
T ss_pred HHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888877777 899999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhc
Q 024463 227 LKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 265 (267)
Q Consensus 227 ~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 265 (267)
++|.++|.+.|+.+|.++ +|+.|.+|+..++.|
T Consensus 352 ~~~~~~Al~~l~~~p~s~------ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 352 RRHNNKALEALQSLPRSE------ARSALENLVLAVLTR 384 (384)
T ss_pred HHHHHHHHHHHhCCCCch------HHHHHHHHHHHHhcC
Confidence 999999999999999999 999999999999876
No 10
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=5.8e-51 Score=361.81 Aligned_cols=207 Identities=36% Similarity=0.554 Sum_probs=183.2
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.+..+|+++|++|++|||||||+|+|++|||+||+|.+||++.|||+|
T Consensus 19 ~l~~~~~~~~~~-----------------~~~~~~~~a~avEliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~~Ail~g 81 (260)
T PF00348_consen 19 LLVLLAAEALGG-----------------DPEKAIPLAAAVELIHAASLIHDDIIDNSDLRRGKPTVHKKFGNAIAILAG 81 (260)
T ss_dssp HHHHHHHHHTTC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccccccccccchhhhc
Confidence 367888888863 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--hh--HH-----------------------------HHHHHHHHhchHHHHHHHHHHHHHHHh
Q 024463 82 DLLISRALVALASLKH--TE--VI-----------------------------MECYMQKTYNKTAALVSNSCKAVAYLS 128 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~--~~--~~-----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la 128 (267)
|+|++.|++.++...+ +. .. +++|++|+++|||+||++||++|++++
T Consensus 82 d~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~la 161 (260)
T PF00348_consen 82 DYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILA 161 (260)
T ss_dssp HHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 9999999999988761 11 00 589999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh-HHHHHhccCCCChhhHH
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-QLRAFINSSSDNPANVD 207 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~-~~~~~l~~~~~~~~~~~ 207 (267)
|.+++..+.+++||+++|++|||+||++|++++++..||+.++||++||+|||+++++++.+ +.++++... .+..+.+
T Consensus 162 g~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~-~~~~~~~ 240 (260)
T PF00348_consen 162 GADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEA-YGKEDSE 240 (260)
T ss_dssp TSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHH-HHHSHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHH-HcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999864 455555543 3344667
Q ss_pred HHHHHHHhcchHHHHHHHH
Q 024463 208 VILEYLGKSHGIQRTTELA 226 (267)
Q Consensus 208 ~i~~~i~~~g~i~~a~~~~ 226 (267)
.+.+.+..++.++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 241 EALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7788888888888887765
No 11
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=1.1e-49 Score=353.50 Aligned_cols=205 Identities=42% Similarity=0.582 Sum_probs=189.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLR-RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILA 80 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~ 80 (267)
.++++.++++|. .+ +.+..+|+++|++|+||||||||+|+|+.|||+||+|.+||+..|||+
T Consensus 24 ~l~~~~~~~~g~-----------------~~~~~~~~la~aiEllh~asLIhDDI~D~s~~RRG~p~~~~~~G~~~Ail~ 86 (259)
T cd00685 24 LLVLLAARALGG-----------------PELEAALRLAAAIELLHTASLVHDDVMDNSDLRRGKPTVHKVFGNATAILA 86 (259)
T ss_pred HHHHHHHHHhCC-----------------CchHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCcHHHHhCcccHHHH
Confidence 367788888874 33 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC---hhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCC
Q 024463 81 GDLLISRALVALASLKH---TEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQ 130 (267)
Q Consensus 81 Gd~Ll~~a~~~l~~~~~---~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~ 130 (267)
||+|++.+++.+++..+ .+++ +++|++|+.+|||+||..+|.+|+++++.
T Consensus 87 gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~ 166 (259)
T cd00685 87 GDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALLAGA 166 (259)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999988765 3322 57899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHH
Q 024463 131 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVIL 210 (267)
Q Consensus 131 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~ 210 (267)
+++.++.+++||+++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 167 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l------------------------ 222 (259)
T cd00685 167 DEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL------------------------ 222 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhc
Q 024463 211 EYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 265 (267)
Q Consensus 211 ~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 265 (267)
++.++.|.++|+..|+.+|.+. .++.|..+++++++|
T Consensus 223 ------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6778999999999999999887 788999999999887
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=1.9e-39 Score=283.07 Aligned_cols=204 Identities=42% Similarity=0.587 Sum_probs=177.8
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhc-cchhHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV-MGNKLAILAG 81 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~-~G~~~Ai~~G 81 (267)
+++++++++|. ..+.+..+++++|++|++++|||||+|++..|||+||+|.+ ||+..|++.|
T Consensus 5 ~~~~~~~~~~~-----------------~~~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~ai~~g 67 (236)
T cd00867 5 LVLLLARALGG-----------------DLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAILAG 67 (236)
T ss_pred HHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHHHHHH
Confidence 57778888875 46889999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|++++.++..+.+....+.. +++|++++++|||++|+.+|..++.+++.+++.
T Consensus 68 d~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~ 147 (236)
T cd00867 68 DYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQ 147 (236)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHH
Confidence 99999999988875432211 678999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
.+.+.+||+++|++|||.||++|++++.+.+|| .++||++||+|||++++
T Consensus 148 ~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~----------------------------- 197 (236)
T cd00867 148 AEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA----------------------------- 197 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH-----------------------------
Confidence 899999999999999999999999999999999 99999999999999995
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhc
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 265 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 265 (267)
.+.+.++.+++.+.+..+++... ..+..+..++..+++|
T Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 --------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred --------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 44566666777777776655431 1567888888888765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-36 Score=255.62 Aligned_cols=209 Identities=24% Similarity=0.315 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH----------
Q 024463 32 RRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------- 101 (267)
Q Consensus 32 ~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~---------- 101 (267)
.++...+..++|++|++||..|||.|+|..|||.|+.|..||++..||+++|++++|++.+..+..|+.+
T Consensus 54 ~dkLaii~~ivemLHNsSLLIDDIEDNs~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleL 133 (322)
T KOG0777|consen 54 KDKLAIISQIVEMLHNSSLLIDDIEDNSPLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLEL 133 (322)
T ss_pred HHHHHHHHHHHHHHhccceeeccccccchhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999998877644
Q ss_pred ------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCcc
Q 024463 102 ------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSA 163 (267)
Q Consensus 102 ------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~ 163 (267)
+++|..|+..|||.||+++.+++..++...++ +..+-.-+|+.|||+|||+++...+.
T Consensus 134 HrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~key 209 (322)
T KOG0777|consen 134 HRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEY 209 (322)
T ss_pred hcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhh
Confidence 78999999999999999999999999976555 45666889999999999999988877
Q ss_pred ccCCCcccccccCcccHHHHHHhhhCh---HHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcC
Q 024463 164 SLGKASLTDLRNGIITAPILFAMEEFP---QLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 240 (267)
Q Consensus 164 ~~GK~~~~Dl~~gk~Tlp~l~al~~~~---~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~l 240 (267)
.-.|.+++||.|||.++|+++|+...+ +...++.+...+-+-...++.++++.|+++|++....+...+|+..++..
T Consensus 210 senKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~ 289 (322)
T KOG0777|consen 210 SENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKND 289 (322)
T ss_pred hcccchhhhhccCccCCcchhhhhcCCchHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999997643 56778888888888888999999999999999999999999999999998
Q ss_pred CCCC
Q 024463 241 PETH 244 (267)
Q Consensus 241 p~~~ 244 (267)
..++
T Consensus 290 g~Np 293 (322)
T KOG0777|consen 290 GENP 293 (322)
T ss_pred CCCc
Confidence 8877
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-35 Score=259.89 Aligned_cols=238 Identities=20% Similarity=0.121 Sum_probs=204.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccch-hHHHHHHHHHHHHHHHHHHcC----CC-h
Q 024463 25 NTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGN-KLAILAGDLLISRALVALASL----KH-T 98 (267)
Q Consensus 25 ~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~-~~Ai~~Gd~Ll~~a~~~l~~~----~~-~ 98 (267)
++........+..++|+||++++++||.|||||+|.+|||+||||++-|+ -.|||.+-+|-+....+|.+. .. .
T Consensus 70 ~~l~~~~~~~a~~lGw~vElLQaffLiaDDIMDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~ 149 (347)
T KOG0711|consen 70 RKLDEEELQLALILGWCVELLQAFFLVADDIMDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYV 149 (347)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHH
Confidence 45567788999999999999999999999999999999999999999999 589998877666555555421 11 0
Q ss_pred -------h----------------------HHHHHHHHHHhchHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Q 024463 99 -------E----------------------VIMECYMQKTYNKTAAL-VSNSCKAVAYLSGQ-REEVATLAFEYGKNLGL 147 (267)
Q Consensus 99 -------~----------------------~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~ 147 (267)
+ ..++.|..++.+|||.| |.+|..+|..++|. +.+.......+...+|.
T Consensus 150 ~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~ 229 (347)
T KOG0711|consen 150 DLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGE 229 (347)
T ss_pred HHHHHHHHHHHHHhhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHH
Confidence 0 11788999999999999 99999999999984 44566678899999999
Q ss_pred HhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhh-ChHHHHHhccCCC--ChhhHHHHHHHHHhcchHHHHHH
Q 024463 148 AYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSSD--NPANVDVILEYLGKSHGIQRTTE 224 (267)
Q Consensus 148 afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~i~~a~~ 224 (267)
.||++|||+|++||++.+|| .|+||+++||||.+.+|++. .+++.+++...+. +++.++.+..+..+.+......+
T Consensus 230 ~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~ 308 (347)
T KOG0711|consen 230 YFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLVVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIE 308 (347)
T ss_pred HHhcchHHHHhcCChhhcCC-CCCccccCceeeehHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999 58999999999999999998 5788888877664 56788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 225 LALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 225 ~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
.-.....+..+.|+.++.+..+ .+..+..+++.+.+|+|
T Consensus 309 yE~~~~~~Ik~~I~~~~~~~~~----~~~v~t~fl~kiykr~k 347 (347)
T KOG0711|consen 309 YEEGSYKKIKKLISQVDEDTGV----KVKVGTSFLNKIYKRSK 347 (347)
T ss_pred hhhhHHHHHHHHHHHccCCCcc----hhhhHHHHHHHHHhhcC
Confidence 9999999999999999876632 67788889999999975
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.88 E-value=1.1e-20 Score=161.53 Aligned_cols=199 Identities=34% Similarity=0.451 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhc---cchhHHHHHHHHHHHHHHHHHHcCCChhHH-----------
Q 024463 36 QCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV---MGNKLAILAGDLLISRALVALASLKHTEVI----------- 101 (267)
Q Consensus 36 ~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~---~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~----------- 101 (267)
..++.++|.+|+++++||||+|++..|+++|++|.. +|...+++.|++++..++..+.....+...
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999998 999999999999999999888765432111
Q ss_pred ----------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCcccc
Q 024463 102 ----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 165 (267)
Q Consensus 102 ----------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 165 (267)
+++|+++++.|||.++...+..++...+.+......+..++..+|.+||+.||+.|+..+....
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 5889999999999999999999998887777777889999999999999999999998776431
Q ss_pred CCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 024463 166 GKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHD 245 (267)
Q Consensus 166 GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~ 245 (267)
+|+.|+|.+++.+....... ...+..++.++.+...+..+.+++.+.+..+.....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAED---------------LLLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhH---------------HHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 58999999998876422111 116778889999999999999999999988776541
Q ss_pred ccchHHHHHHHHHHHHH
Q 024463 246 VDATNARTALVHITQKI 262 (267)
Q Consensus 246 ~~~~~~~~~L~~l~~~~ 262 (267)
.....+...+..+
T Consensus 229 ----~~~~~~~~~~~~~ 241 (243)
T cd00385 229 ----DVPRALLALALNL 241 (243)
T ss_pred ----HHHHHHHHHHHHH
Confidence 1344555554443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=96.58 E-value=0.053 Score=46.72 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH---HHHHHH
Q 024463 31 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---MECYMQ 107 (267)
Q Consensus 31 ~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~---~~~y~~ 107 (267)
.++.....+.++-++|.|...||.|-. +..+++...-.+ ...|++|||.=+.-+.+|+..++...+ -+..-+
T Consensus 31 ~~~~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~R----QLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~e 105 (212)
T PF07307_consen 31 SEEEAERYALATMLVQIALDTHDEVDN-AGDESEESSKER----QLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKE 105 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhh----hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456778888899999999999999977 333322221111 478999999999999999999987655 344455
Q ss_pred HHhchHHHH
Q 024463 108 KTYNKTAAL 116 (267)
Q Consensus 108 ~~~~KTa~l 116 (267)
+...|+..+
T Consensus 106 iNE~K~~ly 114 (212)
T PF07307_consen 106 INELKMSLY 114 (212)
T ss_pred HHHHHHHHH
Confidence 556666655
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=95.49 E-value=0.26 Score=43.53 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=69.8
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccc-cccCcccH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD-LRNGIITA 180 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~D-l~~gk~Tl 180 (267)
++++..-+++-+|++..+.+.+...- .+. .....++.++|.++|+.|=+.|+ +.| +..|++-+
T Consensus 112 ~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~-----------~~D~~~~gR~yl 175 (267)
T PF00494_consen 112 FADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI-----------PEDALRRGRIYL 175 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH-----------HHH-HHTT---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh-----------HHHHHhcccccC
Confidence 56666667777777766665554331 222 34678889999999999888887 478 78999999
Q ss_pred HHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 181 PILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 181 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
|.=..-+..=....++.....+ +.+.. .+......++.+.+++...+..+|+..
T Consensus 176 P~d~l~~~gv~~~dl~~~~~~~-~~~~~---------~~~~~~~~A~~~l~~a~~~~~~l~~~~ 229 (267)
T PF00494_consen 176 PLDDLRRFGVTPEDLLAGRPRS-ERLRA---------LIRELAARARAHLDEARAGLSALPPPR 229 (267)
T ss_dssp -HHHHHHTTSSHHHHHHHG-GG-HHHHH---------HHHHHHHHHHHHHHHHHHGGGGS--TT
T ss_pred CchhHHHcCCCHHHHHhcccCC-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHcCCHh
Confidence 8776543211111222111111 11222 244666778999999999999995554
No 18
>PLN02632 phytoene synthase
Probab=95.37 E-value=0.74 Score=42.48 Aligned_cols=118 Identities=13% Similarity=0.015 Sum_probs=70.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCccc
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQR--EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIIT 179 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~T 179 (267)
++++..-+++-.|.+..+++.+. +..+ ....+.+...+.++|+|+|+.|=+.|+ +.|+..|++-
T Consensus 161 ~~eL~~Ycy~vAgtVG~l~l~vl---g~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv-----------~eD~~~GRvY 226 (334)
T PLN02632 161 FDELYLYCYYVAGTVGLMSVPVM---GIAPESKASTESVYNAALALGIANQLTNILRDV-----------GEDARRGRVY 226 (334)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh---CCCCccccchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcee
Confidence 45555556665566555555442 2222 122244678899999999999988887 4778889999
Q ss_pred HHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 180 APILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 180 lp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
+|.=..-+..=....++... .++ .... .+.+-...++.|+++|...+..+|...
T Consensus 227 LP~e~L~~~Gv~~edl~~~~-~~~-~~~~---------l~~~~~~~Ar~~~~~a~~~l~~lp~~~ 280 (334)
T PLN02632 227 LPQDELAQFGLTDEDIFAGK-VTD-KWRA---------FMKFQIKRARMYFAEAEEGVSELDPAS 280 (334)
T ss_pred CCHHHHHHcCCCHHHHhcCC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHhHhhCCHHh
Confidence 88655333211112222221 111 1111 123334668888899999898888654
No 19
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=94.77 E-value=1.4 Score=39.19 Aligned_cols=114 Identities=10% Similarity=-0.055 Sum_probs=67.9
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp 181 (267)
++++..-+++-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+ +.|...|++.+|
T Consensus 107 ~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl-----------~eD~~~gR~YLP 168 (266)
T TIGR03464 107 WAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV-----------GVDYRKGRVYLP 168 (266)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-----------HHHHhcCCccCC
Confidence 4555555555555555555433 2223332 246789999999999888886 467778999998
Q ss_pred HHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 182 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 182 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
.=..-+..=...+++.. ..+ ..+.. .+......++.++.++...+..+|...
T Consensus 169 ~~~l~~~Gv~~edl~~~-~~~-~~~~~---------~~~~~~~~A~~~~~~a~~~~~~lp~~~ 220 (266)
T TIGR03464 169 RDDLARFGVSEEDLAAG-RAT-PALRE---------LMAFEVSRTRALLDRGAPLAARVDGRL 220 (266)
T ss_pred HHHHHHcCCCHHHHhcC-CCC-HHHHH---------HHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 65433221112222222 111 12222 244555668899999999999998553
No 20
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=94.74 E-value=1.6 Score=38.63 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp 181 (267)
++++..-+++-.|+...+++.+. +.... +....++.++|+|+|+.|=+.|+ +.|+..|++.+|
T Consensus 114 ~~eL~~Y~~~vAg~vg~l~~~i~---~~~~~---~~~~~~A~~lG~AlqltnilRdv-----------~eD~~~gR~YlP 176 (265)
T cd00683 114 LDELDEYCYYVAGVVGLMLLRVF---GASSD---EAALERARALGLALQLTNILRDV-----------GEDARRGRIYLP 176 (265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHh---CCCCC---hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHccCCCcCC
Confidence 45555555555555544444332 22112 23568899999999999988887 367788999998
Q ss_pred HHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 182 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 182 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
.=..-+..-...+++.. ..+ +.+.. .+.+....++.++..|...+..+|...
T Consensus 177 ~d~l~~~gv~~~~l~~~-~~~-~~~~~---------~~~~~~~~A~~~~~~a~~~~~~lp~~~ 228 (265)
T cd00683 177 REELARFGVTLEDLLAP-ENS-PAFRA---------LLRRLIARARAHYREALAGLAALPRRS 228 (265)
T ss_pred HHHHHHcCCCHHHHcCC-CCC-HHHHH---------HHHHHHHHHHHHHHHHHHhHHhCCHhh
Confidence 76644332122222221 111 22222 244556678999999999999999543
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=91.92 E-value=2.7 Score=37.21 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=70.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp 181 (267)
++++..-++.-.|++..+.+.+ ++..++ .....+.++|.++|+.|=+.|+ +.|+..|++.+|
T Consensus 106 ~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv-----------~eD~~~gR~ylP 167 (266)
T TIGR03465 106 FAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV-----------GEDARRGRIYLP 167 (266)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeecC
Confidence 5566666666666666655554 232222 2467889999999999988887 367788999998
Q ss_pred HHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 182 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 182 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
.=..-+..-...+++.. ..+ +.... .+.+-...++.+++++...+..+|...
T Consensus 168 ~~~l~~~gv~~~~l~~~-~~~-~~~~~---------~~~~l~~~A~~~l~~a~~~~~~~p~~~ 219 (266)
T TIGR03465 168 AEELQRFGVPAADILEG-RYS-PALAA---------LCRFQAERARAHYAEADALLPACDRRA 219 (266)
T ss_pred HHHHHHcCCCHHHhcCC-CCC-HHHHH---------HHHHHHHHHHHHHHHHHHhhhhCCHhh
Confidence 76543322112222222 111 12222 234445568888888888888888543
No 22
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=90.73 E-value=1.4 Score=40.79 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcc
Q 024463 138 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 217 (267)
Q Consensus 138 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g 217 (267)
..+++..+|+++|+.|=+.|+. +|+.+|++=||-=..-+.......+.. . +..+...+
T Consensus 166 ~~~~A~~lG~aLQlTNIlRDv~-----------ED~~~GR~YlP~e~l~~~g~~~~dl~~-~----~~~~~~~~------ 223 (336)
T TIGR01559 166 SEALSNSMGLFLQKTNIIRDYL-----------EDINEGRMFWPREIWSKYAKKLGDFKK-P----ENSDKALQ------ 223 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----------hHHhCCCCCCCHHHHHHcCCCHHHhcC-c----cccHHHHH------
Confidence 4688999999999999998883 677889998985532221111222111 1 11112221
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 218 GIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 218 ~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
.+++-...+..|++.|..-+..++...
T Consensus 224 ~l~~lv~~A~~~~~~al~yl~~l~~~~ 250 (336)
T TIGR01559 224 CLNELVTNALHHATDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344556678888889988888886544
No 23
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=90.69 E-value=5 Score=35.68 Aligned_cols=142 Identities=18% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC---CCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH---------
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------- 101 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~--------- 101 (267)
...-...++=++|.+.-+.+|+.|.+. .|..+|-+..+...+.|...+-.+...++-...-+ ++...
T Consensus 38 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 116 (279)
T PRK12884 38 EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLVVILVSVL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 345556677899999999999977654 35666666666667777766655555444322222 22211
Q ss_pred HHHHHHHHhchH--HH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccc
Q 024463 102 MECYMQKTYNKT--AA-----LVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 174 (267)
Q Consensus 102 ~~~y~~~~~~KT--a~-----l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~ 174 (267)
.=-|--..+..| +. .+..+...|....+......=.+.-+.--..+.+++.+|+.|.- +|-+
T Consensus 117 ~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e-----------~D~~ 185 (279)
T PRK12884 117 GILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE-----------GDRL 185 (279)
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHH
Confidence 112321111111 21 12333444444333322211122233344456677788888875 4557
Q ss_pred cCcccHHHHHHhh
Q 024463 175 NGIITAPILFAME 187 (267)
Q Consensus 175 ~gk~Tlp~l~al~ 187 (267)
.|+.|+|+.+.-+
T Consensus 186 ~G~~Tl~v~~G~~ 198 (279)
T PRK12884 186 RGARTLAILYGEK 198 (279)
T ss_pred cCCeeechHhcHH
Confidence 8999999988654
No 24
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=89.11 E-value=14 Score=32.77 Aligned_cols=142 Identities=16% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC---CCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH---------H
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI---------M 102 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~---------~ 102 (267)
..-+..+.=++|.++-+..|+.|.+. .|+++|-+..+...+.|...+-.+...++-....++ +... .
T Consensus 40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~-~~~~~~~~~~~~~~ 118 (276)
T PRK12882 40 TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLP-PLCLAIALFNSLLL 118 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 34455566789999999999977654 457888888888888888888777766654333332 2111 1
Q ss_pred HHHHHHHhchHH--HH-----HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccc
Q 024463 103 ECYMQKTYNKTA--AL-----VSNSCKAVAYLSGQR-EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 174 (267)
Q Consensus 103 ~~y~~~~~~KTa--~l-----~~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~ 174 (267)
--|-...+.++. .. ...+...|+...+.+ ....-.+.-+.-..-+++-+.+|+.|.. +|.+
T Consensus 119 ~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e-----------~D~~ 187 (276)
T PRK12882 119 VLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDVEDIE-----------GDRA 187 (276)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------hHHH
Confidence 234332232222 11 111222333333322 1111122222222345666777887774 4567
Q ss_pred cCcccHHHHHHhhh
Q 024463 175 NGIITAPILFAMEE 188 (267)
Q Consensus 175 ~gk~Tlp~l~al~~ 188 (267)
.|.+|+|+.+..+.
T Consensus 188 ~G~~tlpv~~G~~~ 201 (276)
T PRK12882 188 EGARTLPILIGVRK 201 (276)
T ss_pred cCCccccHHhhHHH
Confidence 89999999986654
No 25
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=86.37 E-value=11 Score=33.82 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCC----C-CCcCcchhccchhHHHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADT----R-RGIGSLSSVMGNKLAILAGDLLISRALVAL 92 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~----R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l 92 (267)
..-+..++=++|.+.-+..|+.|.+.. | +.+|-+..+...+.|...+-.+...++-..
T Consensus 42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~ 104 (281)
T TIGR01474 42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVL 104 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 444555567899999999999886433 3 467877788888888888777666665433
No 26
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=85.41 E-value=26 Score=31.16 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCC---CCcCcchhccchhHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILAGDLLISRALV 90 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~ 90 (267)
..-...++=++|.+.-+..|+.|-+..| +.+|-+..+...+.|...+-.+...++-
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 4455556779999999999998876544 6788888888888998888777776664
No 27
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=83.36 E-value=21 Score=32.59 Aligned_cols=51 Identities=12% Similarity=-0.009 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC---CCcCcchhccchhHHHHHHHHHHHHHHH
Q 024463 40 EITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILAGDLLISRALV 90 (267)
Q Consensus 40 aavEllH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~ 90 (267)
.+.-++|.++-++.|+.|.+..| +.+|....+...+.+...+-.++..++-
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 34456899999999999976644 5577777777888888877766665553
No 28
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=81.63 E-value=29 Score=31.45 Aligned_cols=51 Identities=12% Similarity=-0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCC---CCcCcchhccchhHHHHHHHHHHHHHH
Q 024463 39 AEITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILAGDLLISRAL 89 (267)
Q Consensus 39 AaavEllH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~ 89 (267)
..+.=++|.++-++.|+.|.+..| |.+|....+...+.+...+-.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 355579999999999999876433 456666666777788777765555443
No 29
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=81.03 E-value=37 Score=30.32 Aligned_cols=140 Identities=16% Similarity=0.045 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCC-----CCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH---------
Q 024463 36 QCIAEITEMIHVASLIHDDVLDDADTR-----RGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------- 101 (267)
Q Consensus 36 ~~~AaavEllH~asLIhDDI~D~s~~R-----Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~--------- 101 (267)
.-...+.=++|.+..+..|+.|.+-.| |.||-+-.+-....|...+-.++..+.-....+ ++...
T Consensus 45 ~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-~~~~~~l~~~~~~~ 123 (282)
T PRK12848 45 VVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-NTLTIWLSVAALAL 123 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 333444458999999999998864433 468888888888899888877777665433322 22111
Q ss_pred HHHHHHHHhchH-------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccc
Q 024463 102 MECYMQKTYNKT-------AALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLR 174 (267)
Q Consensus 102 ~~~y~~~~~~KT-------a~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~ 174 (267)
.=-|- ..++.| |..+..+..+|....+.+-.. ..+--+ -.-..+|+.-|+..-..|. -+|.+
T Consensus 124 ~~~Y~-~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~~-~~~~l~--~~~~~w~~~~~~~~a~~D~-------e~D~~ 192 (282)
T PRK12848 124 AWIYP-FMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPL-EAWLLF--LANILWTVAYDTQYAMVDR-------DDDLK 192 (282)
T ss_pred HHHHH-hHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCcH-HHHHHH--HHHHHHHHHHHHHHHhccH-------hhHHH
Confidence 11241 112222 222444444444333222111 111111 1223456666654333332 26778
Q ss_pred cCcccHHHHHHhh
Q 024463 175 NGIITAPILFAME 187 (267)
Q Consensus 175 ~gk~Tlp~l~al~ 187 (267)
.|.+|+|+.+-.+
T Consensus 193 ~G~~tlpv~~G~~ 205 (282)
T PRK12848 193 IGIKSTAILFGRY 205 (282)
T ss_pred cCCccccHHhccc
Confidence 9999999998654
No 30
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=80.85 E-value=38 Score=30.03 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=25.6
Q ss_pred HHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhh
Q 024463 145 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 188 (267)
Q Consensus 145 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 188 (267)
+-...++.+|+.|..+| -+.|+.|+|+.+..++
T Consensus 173 ~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~lG~~~ 205 (285)
T PRK12872 173 KSFIREIVFDIKDIEGD-----------RKSGLKTLPIVLGKER 205 (285)
T ss_pred HHHHHHHHHhcccchhH-----------HHcCCcccchhcchHH
Confidence 45677888999998654 4689999999997654
No 31
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.37 E-value=37 Score=30.53 Aligned_cols=58 Identities=16% Similarity=-0.035 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCC-----CCcCcchhccchhHHHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADTR-----RGIGSLSSVMGNKLAILAGDLLISRALVAL 92 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~R-----Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l 92 (267)
..-...+.=++|.+.-+..|+.|.+-.| |.+|-+-.+-....|+..+-.+...++-..
T Consensus 48 ~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~ 110 (290)
T PRK12870 48 VGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLA 110 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 4444555668999999999997765443 467877778888888888877766665433
No 32
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=76.80 E-value=32 Score=31.17 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhcCCCC-----CC---------CCcCcchhccchhHHHHHHHHHHHHHHHH
Q 024463 44 MIHVASLIHDDVLDDAD-----TR---------RGIGSLSSVMGNKLAILAGDLLISRALVA 91 (267)
Q Consensus 44 llH~asLIhDDI~D~s~-----~R---------Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~ 91 (267)
+.|.+ -++.|+.|.+. .| +.+|.+..+...+.|...+-.+...++-.
T Consensus 53 ~~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 53 GFEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34665 59999966532 12 46777777778888888776666655543
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=75.17 E-value=34 Score=30.38 Aligned_cols=55 Identities=18% Similarity=0.044 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC---CCCCcCcchhccchhHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDAD---TRRGIGSLSSVMGNKLAILAGDLLISRAL 89 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~ 89 (267)
......++=+.|.+.-+..|+.|-+. .|+.+|-+..+...+.|...+-.+...+.
T Consensus 39 ~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 39 LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 33344556677899999999977544 45667777667777777777666655554
No 34
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=74.55 E-value=24 Score=31.96 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhc
Q 024463 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKS 216 (267)
Q Consensus 137 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~ 216 (267)
........+|.++|+.|=+.|+ +.|.+.|+.=+|.=-..+-..+...+......+ ....
T Consensus 153 ~~~~~a~~lG~A~QlvNilRdv-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~-----~~~~----- 211 (288)
T COG1562 153 ATRAYARGLGLALQLVNILRDV-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDD-----AFRE----- 211 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchh-----HHHH-----
Confidence 3445556699999999988887 578888888888543222221222222211111 1222
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 024463 217 HGIQRTTELALKHASLAAAAIDSLPETHD 245 (267)
Q Consensus 217 g~i~~a~~~~~~~~~~a~~~L~~lp~~~~ 245 (267)
.+++-...++.+...+...+..+|....
T Consensus 212 -~~~~~~~~ar~~~~~a~~~~~~lp~~~~ 239 (288)
T COG1562 212 -LMRFEADRARDHLAEARRGLPALPGRAQ 239 (288)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhCCcccc
Confidence 2445566788999999999999998763
No 35
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=73.25 E-value=59 Score=27.85 Aligned_cols=140 Identities=18% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCC--Cc---CcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH--------
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADTRR--GI---GSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI-------- 101 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~RR--g~---pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~-------- 101 (267)
......++=++|.+.-+.||+.|-+.-|. ++ |-...+...+.+...+-.++..+.-..... ++...
T Consensus 25 ~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~-~~~~~~~~~~~~~ 103 (257)
T PF01040_consen 25 FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLL-GPWFLLILLLGFL 103 (257)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 33333333499999999999988877666 43 334555665666665555554443322222 22211
Q ss_pred -HHHHHHHHhc------hHHH---HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcc
Q 024463 102 -MECYMQKTYN------KTAA---LVSNSCKAVAYLSGQR-EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 170 (267)
Q Consensus 102 -~~~y~~~~~~------KTa~---l~~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 170 (267)
.=-|-.-.+. |.-. .+.....+|....+.+ +...-.+.-+.--++......+|+.|+.+
T Consensus 104 ~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---------- 173 (257)
T PF01040_consen 104 LGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEG---------- 173 (257)
T ss_pred HHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------
Confidence 1112210011 2111 1223333444444333 22222334444577888888889999865
Q ss_pred cccccCcccHHHHHHh
Q 024463 171 TDLRNGIITAPILFAM 186 (267)
Q Consensus 171 ~Dl~~gk~Tlp~l~al 186 (267)
|.+.|+.|+|+.+..
T Consensus 174 -D~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 174 -DRKAGRRTLPVLLGE 188 (257)
T ss_pred -HHHcCCcchHHHHHH
Confidence 456889999998843
No 36
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=68.31 E-value=89 Score=27.91 Aligned_cols=145 Identities=19% Similarity=0.125 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchh-----ccchhHHHHHHHHHHHHHHHHHHcCCChhHH------
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSS-----VMGNKLAILAGDLLISRALVALASLKHTEVI------ 101 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~-----~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~------ 101 (267)
....-...+.=+.-.+.-+.+|+.|.+.-|++.||-++ +-..+.|....-.++..++-...-++.....
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~ 126 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAAL 126 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555666667888999999999888776665554444 4555566655555554444332222211111
Q ss_pred --HHHHHHHHh------chHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccc
Q 024463 102 --MECYMQKTY------NKTAALVSNSCKAVAYLSGQ-REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTD 172 (267)
Q Consensus 102 --~~~y~~~~~------~KTa~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~D 172 (267)
.--|..+-+ .=-|..+..+.-.|+...+. .....-.+.-+.--..++|.+..|+.|.-+|.
T Consensus 127 ~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~---------- 196 (289)
T COG0382 127 VLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDR---------- 196 (289)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchH----------
Confidence 222311100 01344466666666655553 23334456677777889999999999987654
Q ss_pred cccCcccHHHHHHhhh
Q 024463 173 LRNGIITAPILFAMEE 188 (267)
Q Consensus 173 l~~gk~Tlp~l~al~~ 188 (267)
+.|..|.|+.+..+.
T Consensus 197 -~~G~~s~~~~~G~~~ 211 (289)
T COG0382 197 -KAGLKSLPVLFGIKK 211 (289)
T ss_pred -hcCCcchHHHhCchh
Confidence 577888888886554
No 37
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=65.00 E-value=6.8 Score=28.70 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhccc
Q 024463 132 EEVATLAFEYGKNLGLAYQLIDDILDFT 159 (267)
Q Consensus 132 ~~~~~~l~~~g~~lG~afQi~DD~ld~~ 159 (267)
++..+.+-+||..+|-.||+.==+--++
T Consensus 15 et~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 4577889999999999999875444443
No 38
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=64.24 E-value=1.1e+02 Score=27.31 Aligned_cols=52 Identities=15% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC-----CCCcCcchhccchhHHHHHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDADT-----RRGIGSLSSVMGNKLAILAGDLLI 85 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~~-----RRg~pt~~~~~G~~~Ai~~Gd~Ll 85 (267)
...-...+.=+++.+.-+..|+.|.+.. .+.+|-+..+.....|...+-.+.
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 93 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSL 93 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 3445556667999999999999886442 245676666777777777665443
No 39
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=64.20 E-value=1e+02 Score=28.25 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=31.3
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHH
Q 024463 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 128 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
.|.+.+....+...-+.+=.+..|-||+.|= +++|.|++|+-..|
T Consensus 59 ~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~ 103 (323)
T PRK10888 59 VGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAF 103 (323)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHh
Confidence 3444444445666667788889999999763 56788888876655
No 40
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=61.67 E-value=1.2e+02 Score=27.05 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC----CC-CCcCcchhccchhHHHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVAL 92 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l 92 (267)
..-...++=++|.+.-+..|+.|.+- .| +.+|-+-.+-..+.|...+-.++..+.-.+
T Consensus 47 ~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~ 109 (285)
T PRK12847 47 LVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVIL 109 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 44445556789999999999988643 33 467776667777788877776666665443
No 41
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=60.36 E-value=1.3e+02 Score=27.32 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=31.1
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 127 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 127 la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
+.+.+.+....+...-+.|=.+.=|-||+.|= +++|.|++|....|.
T Consensus 57 ~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~G 103 (319)
T TIGR02748 57 FGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKWG 103 (319)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHhC
Confidence 34555554445556667777888899999773 466777777655543
No 42
>PRK10581 geranyltranstransferase; Provisional
Probab=57.15 E-value=30 Score=31.39 Aligned_cols=62 Identities=27% Similarity=0.321 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC------------CCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCC
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDD------------ADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~ 96 (267)
+..+...-+.+=.++-|.|||.|- ++.+.|++|+=..+|...|-....-++..|.+.+..++
T Consensus 205 ~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 205 LPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445556667888999999999983 34566777776666666666655656666666666654
No 43
>PLN00012 chlorophyll synthetase; Provisional
Probab=56.82 E-value=1.5e+02 Score=27.85 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCC---CCcCcchhccchhHHHHHH
Q 024463 36 QCIAEITEMIHVASLIHDDVLDDADTR---RGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 36 ~~~AaavEllH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ai~~G 81 (267)
.-.-.+.-+++.++-+..|+.|.+.-| +.+|..-.......++..+
T Consensus 126 l~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 126 VCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHH
Confidence 334445668889999999998876533 4566666667777776633
No 44
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=56.20 E-value=1.5e+02 Score=26.37 Aligned_cols=50 Identities=10% Similarity=-0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCc---CcchhccchhHHHHHHHHHHHHH
Q 024463 39 AEITEMIHVASLIHDDVLDDADTRRGI---GSLSSVMGNKLAILAGDLLISRA 88 (267)
Q Consensus 39 AaavEllH~asLIhDDI~D~s~~RRg~---pt~~~~~G~~~Ai~~Gd~Ll~~a 88 (267)
..+.-++|.++-+..|+.|.+..|+++ |....+...+.+...+-.+...+
T Consensus 44 ~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 44 LMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 345668999999999999988766654 44444445555555554444333
No 45
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=55.74 E-value=1.4e+02 Score=26.05 Aligned_cols=41 Identities=32% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 133 EVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 133 ~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
+....+...-+-+=.++-|.||+.|= ++.|.|++|+-..|.
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~G 79 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVFG 79 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHhC
Confidence 44455667777888899999999662 345677777765553
No 46
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=55.57 E-value=1.4e+02 Score=26.07 Aligned_cols=50 Identities=30% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 124 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+.+.+.+.+....+...-+.+=.++=|.||+.|= +++|.|++|.-..|.
T Consensus 24 ~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~G 73 (260)
T PF00348_consen 24 AAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKFG 73 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCcccccccc
Confidence 33444455666667778888888999999999773 567888887666553
No 47
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=55.10 E-value=1.7e+02 Score=26.71 Aligned_cols=59 Identities=17% Similarity=-0.033 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC---CCC--CcCcchhccchhHHHHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDAD---TRR--GIGSLSSVMGNKLAILAGDLLISRALVALA 93 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~---~RR--g~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~ 93 (267)
..-...+.=++|.++-+..|+.|.+- .+| .||.+..+...+.|+..+-.+...++-.+.
T Consensus 74 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 74 LFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44455566799999999999977642 343 588888888888888777666555554433
No 48
>PRK13595 ubiA prenyltransferase; Provisional
Probab=47.93 E-value=2.2e+02 Score=25.89 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhh
Q 024463 117 VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAME 187 (267)
Q Consensus 117 ~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 187 (267)
+..+...|+...|......- + -...-.+++|++.-|+.|..+ |-+.|..|.|+.+.-+
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~-l-~a~~~w~~g~dii~ai~Dieg-----------Dr~~Gi~Slpv~lG~r 212 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP-L-LALMAWSVGKHAFDAAQDIPA-----------DRAAGTRTVATTLGVR 212 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH-H-HHHHHHHHHHHHHHhccChHh-----------HHHcCCeechHHhCcH
Confidence 46677777777765433211 1 223345689999999999754 5568999999998654
No 49
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=46.50 E-value=44 Score=29.75 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-CCCCCCCcCcchhccchhHHHHHHHHHHHHH
Q 024463 36 QCIAEITEMIHVASLIHDDVLD-DADTRRGIGSLSSVMGNKLAILAGDLLISRA 88 (267)
Q Consensus 36 ~~~AaavEllH~asLIhDDI~D-~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a 88 (267)
.-++..+-+.-.+.+..+|+.| +.+.+.|++|.=..+|.+.+...--.++..+
T Consensus 164 ~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 217 (283)
T TIGR01476 164 VVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVF 217 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHH
Confidence 3344455556666789999999 5567789999999999998877655544433
No 50
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=44.90 E-value=2.4e+02 Score=25.58 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCC----C-CCcCcchhccchhHHHHHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADT----R-RGIGSLSSVMGNKLAILAGDLLISRALVALA 93 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~----R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~ 93 (267)
..-...+.-++|.+.-+..|+.|.+.. | |.||-+-.+.....|+..|-.+...++-.+.
T Consensus 49 ~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~ 112 (306)
T PRK13362 49 MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLA 112 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333345677999999999999776543 3 5788888888999999988877777665443
No 51
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=41.29 E-value=2.7e+02 Score=25.06 Aligned_cols=61 Identities=15% Similarity=-0.035 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC----CC-CCcCcchhccchhHHHHHHHHHHHHHHHHHHcC
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVALASL 95 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~ 95 (267)
..-...++=+++.+..+..|+.|.+- .| |++|-+-.+.....|+..+-.+...++-.+..+
T Consensus 47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l 112 (289)
T PLN02809 47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL 112 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677799999999999977643 35 588888888888888877776666665544444
No 52
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=39.63 E-value=2.8e+02 Score=24.88 Aligned_cols=56 Identities=9% Similarity=-0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC---CC--CCcCcchhccchhHHHHHHHHHHHHH
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDDAD---TR--RGIGSLSSVMGNKLAILAGDLLISRA 88 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~s~---~R--Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a 88 (267)
....-...+.=+.+++.-+..|+.|.+- .+ ++||.+..+.....|...+-.+...+
T Consensus 47 ~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~ 107 (291)
T PRK12874 47 KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIF 107 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3344555566678999999999988753 33 46787777888888877776655433
No 53
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=39.34 E-value=3e+02 Score=25.09 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 137 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+...-+.+=.+.-|.||+.|- +++|.|++|+-..|.
T Consensus 71 ~~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~G 107 (322)
T TIGR02749 71 RLAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLFG 107 (322)
T ss_pred HHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHhC
Confidence 4555667777888999999773 567888888766653
No 54
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=37.96 E-value=84 Score=28.47 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCcCcchhccchhHHHHHHHHHHHHHH
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDA-DTRRGIGSLSSVMGNKLAILAGDLLISRAL 89 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s-~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~ 89 (267)
..-++..+=+.-.+.++.+|+.|-. +.|.|++|.-.++|.+.+......++..++
T Consensus 185 ~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~ 240 (306)
T TIGR02056 185 IAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHH
Confidence 3344444555666778889999854 467899999999999988877765555433
No 55
>CHL00151 preA prenyl transferase; Reviewed
Probab=34.31 E-value=3.2e+02 Score=24.85 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 137 LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 137 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+...-+.+=.+.-|-||+.|= +++|.|++|+-..|.
T Consensus 72 ~~A~aiEllH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 108 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVIDE------------CSIRRGIPTVHKIFG 108 (323)
T ss_pred HHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHhC
Confidence 3455556677788899999662 567888888766653
No 56
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=33.40 E-value=3.4e+02 Score=23.94 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHhchH-HHHHHHHHHHHHHHh--CCCHHHHH--HHHHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKT-AALVSNSCKAVAYLS--GQREEVAT--LAFEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KT-a~l~~~~~~~ga~la--~~~~~~~~--~l~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
.++|+++ +..| |..+.+.+ +-... ..++.... .+.++-+..+...-+.||+..|-.+
T Consensus 160 l~eYl~~-R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE 221 (303)
T cd00687 160 VAEYLEM-RRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHH-hhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5778764 4444 33332221 11112 23444333 3677888888899999999998543
No 57
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=33.09 E-value=85 Score=28.25 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=26.8
Q ss_pred HHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhh
Q 024463 145 LGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE 188 (267)
Q Consensus 145 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 188 (267)
...++.+.+++.|+.+| -++||.|+|+.+..+.
T Consensus 172 ~~~a~~ii~~irDie~D-----------r~~G~~Tlpv~lG~~~ 204 (282)
T PRK13105 172 WGMASHAFGAVQDVVAD-----------REAGIASIATVLGARR 204 (282)
T ss_pred HHHHHHHHHhCcchHhH-----------HHcCCccchHHhcHHH
Confidence 46789999999998654 4689999999997654
No 58
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=32.70 E-value=3.6e+02 Score=24.08 Aligned_cols=54 Identities=7% Similarity=0.057 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC----CC-CCcCcchhccchhHHHHHHHHHHH
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLIS 86 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~ 86 (267)
....-...++=++|.+.-+..|+.|.+- .| ++||-+-.+-..+.|+..+-.++.
T Consensus 39 ~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~ 97 (284)
T PRK12888 39 ADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALA 97 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3345556677799999999999988643 22 467777777777787776654443
No 59
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=30.80 E-value=3.5e+02 Score=23.31 Aligned_cols=59 Identities=12% Similarity=-0.051 Sum_probs=33.1
Q ss_pred HHHHHHHHhchHHHHHHHHH-HHHHHHhCCCH---HHHHHHHHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKTAALVSNSC-KAVAYLSGQRE---EVATLAFEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~-~~ga~la~~~~---~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
.++|+.+-..-.|..+.+.+ ..+.- -..++ .....+..+....+..-=+.||+..|-.+
T Consensus 153 ~~eYl~~R~~~~g~~~~~~l~~~~~g-~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE 215 (284)
T cd00868 153 FEEYLENRRVSIGYPPLLALSFLGMG-DILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKE 215 (284)
T ss_pred HHHHHHhceehhhHHHHHHHHHHHcC-CCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHH
Confidence 57787754443333332222 22211 12343 34456777778888888889999888543
No 60
>PRK13591 ubiA prenyltransferase; Provisional
Probab=29.96 E-value=4.4e+02 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCcC
Q 024463 39 AEITEMIHVASLIHDDVLDDADTRRGIG 66 (267)
Q Consensus 39 AaavEllH~asLIhDDI~D~s~~RRg~p 66 (267)
..+.-++-.+.-+.||..|-...|-++|
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P 91 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRS 91 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCc
Confidence 3344477788899999988877677777
No 61
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=29.85 E-value=4.1e+02 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC----C-CCcCcchhccchhHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDADT----R-RGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~~----R-Rg~pt~~~~~G~~~Ai~~G 81 (267)
...-...++=+.|.+.-+..|+.|.+-. | +++|-+-.+.....|...+
T Consensus 43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~ 95 (291)
T PRK12886 43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFI 95 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHH
Confidence 3555666777999999999999776543 3 4677777777788887764
No 62
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=27.73 E-value=4.6e+02 Score=23.71 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC-----CCCcCcchhccchhHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDADT-----RRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~~-----RRg~pt~~~~~G~~~Ai~~G 81 (267)
...-...++=+++.+.-+..|+.|.+-- .+.||-+..+.....|+..+
T Consensus 50 ~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 50 TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3455666778999999999999776542 24578777777888887665
No 63
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=27.37 E-value=2.1e+02 Score=26.04 Aligned_cols=76 Identities=16% Similarity=0.058 Sum_probs=47.6
Q ss_pred HHHHHHHH---hchHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHh-----cchhhhhccccCccccCC
Q 024463 102 MECYMQKT---YNKTAALVSNSCKAVAYLSGQR------EEVATLAFEYGKNLGLAY-----QLIDDILDFTGTSASLGK 167 (267)
Q Consensus 102 ~~~y~~~~---~~KTa~l~~~~~~~ga~la~~~------~~~~~~l~~~g~~lG~af-----Qi~DD~ld~~~~~~~~GK 167 (267)
+..|++.. +-+|-.+.-.|+..|..++... .... .-+---+|..+ .+.||+.|.--|. ...+
T Consensus 30 ~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~-~~~R 105 (314)
T PRK12878 30 LRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDA-KVAR 105 (314)
T ss_pred HHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCC
Confidence 56799998 7788888899999999887542 1111 11112233333 7899999965443 2233
Q ss_pred CcccccccCcccHH
Q 024463 168 ASLTDLRNGIITAP 181 (267)
Q Consensus 168 ~~~~Dl~~gk~Tlp 181 (267)
+...-+-.|+.|..
T Consensus 106 t~~RPl~sG~is~~ 119 (314)
T PRK12878 106 TRSRPLPSGQVSRK 119 (314)
T ss_pred CCCCCCCCCCcCHH
Confidence 33455778888733
No 64
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=27.28 E-value=4.4e+02 Score=23.33 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHhc-chhhhhccc-cCccccCCCcccccccC
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLS---GQREEVATLAFEYGKNLGLAYQ-LIDDILDFT-GTSASLGKASLTDLRNG 176 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la---~~~~~~~~~l~~~g~~lG~afQ-i~DD~ld~~-~~~~~~GK~~~~Dl~~g 176 (267)
...|++..+-+|-.....|+-+|..++ +..+-..-.+.-++--+..+.= +.|||-|+. +-+...-+....-+.+|
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G 82 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRG 82 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCC
Q ss_pred cccHHHHHHh
Q 024463 177 IITAPILFAM 186 (267)
Q Consensus 177 k~Tlp~l~al 186 (267)
+.|..-.+.+
T Consensus 83 ~is~~~~~~~ 92 (293)
T PRK06080 83 GISPKQVKRA 92 (293)
T ss_pred CCCHHHHHHH
No 65
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=26.54 E-value=2e+02 Score=25.92 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCcCcchhccchhHHHHHHHHHHHHHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDAD-TRRGIGSLSSVMGNKLAILAGDLLISRALVALA 93 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~-~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~ 93 (267)
...-++.++=+.-.+.++..++.|-+. .+.|+.|.-.++|.+.|....-.++..++-.+.
T Consensus 161 ~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 161 ALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777889999999999765 567999999999999999888888777765443
No 66
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=26.05 E-value=4.2e+02 Score=23.49 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC----CC-CCcCcchhccchhHHHHHHHHHHHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDAD----TR-RGIGSLSSVMGNKLAILAGDLLISRALVA 91 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~ 91 (267)
...-+..+.-+++.++.+..|+.|.+- .| +.||-+..+-....|...+-.++..++-.
T Consensus 37 ~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l 99 (279)
T PRK12869 37 PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTAL 99 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 455667778899999999999987543 33 57888888888888888887776666544
No 67
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=24.33 E-value=1.8e+02 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCcCcchhccchhHHHHHHHHHHHHHH
Q 024463 34 RQQCIAEITEMIHVASLIHDDVLDDAD-TRRGIGSLSSVMGNKLAILAGDLLISRAL 89 (267)
Q Consensus 34 ~~~~~AaavEllH~asLIhDDI~D~s~-~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~ 89 (267)
...-++...-+...+.++..|+.|-.. .|.|++|.-..+|.+.+....-+++..++
T Consensus 190 ~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 190 PIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 344444555555666688889988755 67899999999999988877665555554
No 68
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=23.69 E-value=5.5e+02 Score=23.23 Aligned_cols=134 Identities=13% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHH----HhhhcCCCCCCCCc---CcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH---------------
Q 024463 44 MIHVASLI----HDDVLDDADTRRGI---GSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI--------------- 101 (267)
Q Consensus 44 llH~asLI----hDDI~D~s~~RRg~---pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~--------------- 101 (267)
+.+.+.-+ ++|+.|-+..|.++ |-...++..+.+....-.+...++-.....+..-..
T Consensus 60 ~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~p 139 (308)
T PRK12887 60 IACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLP 139 (308)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q ss_pred ----------HHHHHHHHhchHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcc
Q 024463 102 ----------MECYMQKTYNKTAAL-VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASL 170 (267)
Q Consensus 102 ----------~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~ 170 (267)
..-..-.+.+=.-.+ +...........+.-+...=.+.-+.--.-.++.+.+|+.|.-
T Consensus 140 P~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~e----------- 208 (308)
T PRK12887 140 PIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDME----------- 208 (308)
T ss_pred chhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchh-----------
Q ss_pred cccccCcccHHHHHHhhh
Q 024463 171 TDLRNGIITAPILFAMEE 188 (267)
Q Consensus 171 ~Dl~~gk~Tlp~l~al~~ 188 (267)
+|.+.|+.|+|+.+.-+.
T Consensus 209 gD~~~Gi~Tlav~lG~~~ 226 (308)
T PRK12887 209 GDRQYQITTFTLRLGKQA 226 (308)
T ss_pred hHHHcCCcchhHHHhHHH
No 69
>PLN02857 octaprenyl-diphosphate synthase
Probab=22.89 E-value=2.3e+02 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDD 58 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~ 58 (267)
+....+...-+.+=.++-|.|||.|-
T Consensus 288 ~~~~~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 288 SVKEQMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555567788999999999984
No 70
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=22.77 E-value=3.8e+02 Score=24.02 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----cchhhhhccccCccccCCCcccccccC
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY-----QLIDDILDFTGTSASLGKASLTDLRNG 176 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~af-----Qi~DD~ld~~~~~~~~GK~~~~Dl~~g 176 (267)
...|++.++-++..+...++.+|..++... ..+...-+.--+|..+ .+.||+.| .+-+...-+....-|-.|
T Consensus 10 ~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~~~l~~l~~~l~~aa~~~iNd~~D-~~iD~~~~Rt~~Rpl~sG 86 (296)
T PRK04375 10 LKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLLLLLTLLGIALVAGAAGALNNYID-RDIDAKMERTKNRPLVTG 86 (296)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHhHHh-hccCCCCCccCCCCCCCC
Q ss_pred cccHHHHHHh
Q 024463 177 IITAPILFAM 186 (267)
Q Consensus 177 k~Tlp~l~al 186 (267)
+.|..-.+.+
T Consensus 87 ~is~~~a~~~ 96 (296)
T PRK04375 87 RISPREALIF 96 (296)
T ss_pred CcCHHHHHHH
No 71
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=22.63 E-value=5.7e+02 Score=23.02 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=42.3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHh----CC-CHHHH---HHHHHHHHHHHHHhcchhhhhccccCccc----cC---
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLS----GQ-REEVA---TLAFEYGKNLGLAYQLIDDILDFTGTSAS----LG--- 166 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la----~~-~~~~~---~~l~~~g~~lG~afQi~DD~ld~~~~~~~----~G--- 166 (267)
...|++.++-+|-.+.-.+...|+.+| |. +.... -...-+..+.| . +.||+.|..-|... ++
T Consensus 5 ~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag--~-~iND~~D~~~D~~~v~rtm~r~~ 81 (297)
T PRK12871 5 LKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAG--F-VLNDYVDRKRDRLDVENTLTRYW 81 (297)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH--H-HHhhHHHHhcCcchHhhhhhccc
Confidence 457889999887655545544666564 22 22211 12233444444 3 89999999776421 23
Q ss_pred CC-cccccccCccc
Q 024463 167 KA-SLTDLRNGIIT 179 (267)
Q Consensus 167 K~-~~~Dl~~gk~T 179 (267)
|| ...-+-.|+.|
T Consensus 82 ~P~~~Rpl~sG~is 95 (297)
T PRK12871 82 RPFKERPIPSGKLS 95 (297)
T ss_pred cCCCCCccCCCCcC
Confidence 33 23445677776
No 72
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=22.34 E-value=2.1e+02 Score=26.08 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 138 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 138 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
+...-+.+=.+.=|-||+.| .+|+|.|++|....|.
T Consensus 71 ~aaavEliH~~SLiHDDvmD------------~s~~RRG~pt~~~~~g 106 (322)
T COG0142 71 LAAAIELIHTASLIHDDLMD------------DDDLRRGKPTVHAKFG 106 (322)
T ss_pred HHHHHHHHHHHHHHHhhccc------------CCCccCCCCCchhHhc
Confidence 33444555566678899954 2678999999888873
No 73
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=22.01 E-value=6e+02 Score=23.00 Aligned_cols=61 Identities=20% Similarity=0.036 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCC-----CCcCcchhccchhHHHHHHHHHHHHHHHHHHcC
Q 024463 35 QQCIAEITEMIHVASLIHDDVLDDADTR-----RGIGSLSSVMGNKLAILAGDLLISRALVALASL 95 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D~s~~R-----Rg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~ 95 (267)
....-...-++-.+.-+..|++|.+-.| |.||-+-.+.....|+..+-.+...++-.+..+
T Consensus 46 ~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l 111 (294)
T PRK12873 46 LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSL 111 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678899999999997775443 688888888889999988877776665544333
No 74
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=21.01 E-value=2.3e+02 Score=25.41 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhcCCCC-CCCCcCcchhccchhHHHHHHHHH
Q 024463 43 EMIHVASLIHDDVLDDAD-TRRGIGSLSSVMGNKLAILAGDLL 84 (267)
Q Consensus 43 EllH~asLIhDDI~D~s~-~RRg~pt~~~~~G~~~Ai~~Gd~L 84 (267)
=++..+.++..++.|-+. .|.|++|.=.++|.+.+......+
T Consensus 175 ~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~ 217 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAAC 217 (282)
T ss_pred HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHH
Confidence 366777788899999755 778999999999999887543333
No 75
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=20.38 E-value=2.8e+02 Score=24.52 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----cchhhhhccccCccccCCCcccccccCcc
Q 024463 104 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAY-----QLIDDILDFTGTSASLGKASLTDLRNGII 178 (267)
Q Consensus 104 ~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~af-----Qi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 178 (267)
.|++.++-++..+...++..|..++.... ..+...-+.--+|..+ .+.||+.| .+-+...-+....-+-.|+.
T Consensus 2 ~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D-~~iD~~~~Rt~~Rpl~sG~i 79 (280)
T TIGR01473 2 DYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLLLLTLLGTTLAAASANAFNMYID-RDIDKKMKRTRNRPLVTGRI 79 (280)
T ss_pred chHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcCCCCCCCCCCCCCCCCc
Q ss_pred cHHHHHHh
Q 024463 179 TAPILFAM 186 (267)
Q Consensus 179 Tlp~l~al 186 (267)
|..-.+.+
T Consensus 80 s~~~a~~~ 87 (280)
T TIGR01473 80 SPREALAF 87 (280)
T ss_pred CHHHHHHH
No 76
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=20.32 E-value=2.4e+02 Score=25.67 Aligned_cols=85 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHhc----chhhhhccccCccccCCCcccc-ccc
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLG-LAYQ----LIDDILDFTGTSASLGKASLTD-LRN 175 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG-~afQ----i~DD~ld~~~~~~~~GK~~~~D-l~~ 175 (267)
...|++.++-+|-..-..|+-+|..++.......+...-+.--+| +++| +.|||-|+..+.+.......+. +.+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~ 82 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQ 82 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhcc
Q ss_pred CcccHHHHHHh
Q 024463 176 GIITAPILFAM 186 (267)
Q Consensus 176 gk~Tlp~l~al 186 (267)
|..|.--++.+
T Consensus 83 ~~ls~~~v~~~ 93 (317)
T PRK13387 83 HGLKPRNVLTV 93 (317)
T ss_pred CCCCHHHHHHH
Done!