Query 024463
Match_columns 267
No_of_seqs 191 out of 1124
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3apz_A Geranyl diphosphate syn 100.0 9.4E-61 3.2E-65 439.4 27.2 266 2-267 56-348 (348)
2 3oyr_A Trans-isoprenyl diphosp 100.0 3.8E-61 1.3E-65 440.2 24.2 242 2-266 71-344 (345)
3 3mzv_A Decaprenyl diphosphate 100.0 9.9E-61 3.4E-65 437.3 26.7 243 2-267 59-333 (341)
4 3rmg_A Octaprenyl-diphosphate 100.0 2.3E-60 7.7E-65 434.0 26.4 242 2-267 53-326 (334)
5 3nf2_A Putative polyprenyl syn 100.0 2.7E-60 9.3E-65 435.8 22.6 243 2-266 60-343 (352)
6 3lmd_A Geranylgeranyl pyrophos 100.0 4.4E-60 1.5E-64 434.9 23.8 243 2-267 80-352 (360)
7 3pko_A Geranylgeranyl pyrophos 100.0 5.2E-60 1.8E-64 431.6 23.6 231 31-267 74-334 (334)
8 1wy0_A Geranylgeranyl pyrophos 100.0 1E-59 3.4E-64 431.6 22.1 242 3-267 53-342 (342)
9 3aqb_B Component B of hexapren 100.0 4.4E-59 1.5E-63 424.5 23.4 241 2-267 50-325 (325)
10 1wmw_A Geranylgeranyl diphosph 100.0 3.9E-58 1.3E-62 419.1 21.3 240 2-267 45-330 (330)
11 4dhd_A Polyprenyl synthetase; 100.0 1.3E-57 4.5E-62 419.1 23.3 240 2-267 51-336 (358)
12 3lk5_A Geranylgeranyl pyrophos 100.0 3.5E-57 1.2E-61 418.8 25.2 248 2-266 68-372 (380)
13 3tc1_A Octaprenyl pyrophosphat 100.0 2.2E-57 7.4E-62 410.9 23.2 219 33-263 57-307 (315)
14 2q80_A Geranylgeranyl pyrophos 100.0 3.3E-57 1.1E-61 407.8 22.1 235 3-267 32-297 (301)
15 2e8v_A Geranylgeranyl pyrophos 100.0 3.3E-57 1.1E-61 414.3 19.9 243 3-264 47-339 (340)
16 1v4e_A Octoprenyl-diphosphate 100.0 1.9E-56 6.3E-61 402.5 22.6 218 2-244 46-289 (299)
17 1yhl_A Farnesyl pyrophosphate 100.0 9.6E-56 3.3E-60 408.0 21.5 253 2-267 53-362 (362)
18 2qis_A Farnesyl pyrophosphate 100.0 1.9E-55 6.6E-60 407.0 23.5 249 2-267 83-374 (374)
19 1uby_A FPS, farnesyl diphospha 100.0 4.9E-55 1.7E-59 403.4 23.1 249 2-267 76-367 (367)
20 3mav_A Farnesyl pyrophosphate 100.0 2.4E-54 8.2E-59 402.7 20.9 246 2-265 85-394 (395)
21 2ihi_A Pyrophosphate synthase; 100.0 3.3E-54 1.1E-58 400.5 20.7 247 2-266 85-395 (395)
22 1rtr_A Geranyltranstransferase 100.0 1.8E-54 6E-59 389.9 18.1 210 2-267 48-293 (301)
23 4f62_A Geranyltranstransferase 100.0 8.9E-54 3.1E-58 386.7 21.9 208 2-267 51-295 (317)
24 2her_A Fragment, farnesyl pyro 100.0 9E-55 3.1E-59 400.1 15.6 237 3-265 78-354 (368)
25 3dyh_A Farnesyl pyrophosphate 100.0 7.1E-54 2.4E-58 398.1 19.7 257 2-267 75-390 (390)
26 3lsn_A Geranyltranstransferase 100.0 9.1E-54 3.1E-58 385.3 19.8 208 2-267 50-296 (304)
27 3p8r_A Geranyltranstransferase 100.0 6.8E-54 2.3E-58 386.0 18.6 208 2-267 56-302 (302)
28 3uca_A Geranyltranstransferase 100.0 9.5E-54 3.3E-58 387.6 19.6 208 2-267 80-324 (324)
29 3p8l_A Geranyltranstransferase 100.0 5.8E-54 2E-58 386.0 18.0 209 2-265 56-302 (302)
30 3ts7_A Geranyltranstransferase 100.0 8.5E-54 2.9E-58 387.9 19.1 208 2-267 56-302 (324)
31 2h8o_A Geranyltranstransferase 100.0 3.2E-53 1.1E-57 386.2 20.3 208 2-267 91-335 (335)
32 1rqj_A Geranyltranstransferase 100.0 8.2E-54 2.8E-58 385.5 16.2 211 2-267 50-299 (299)
33 3m0g_A Farnesyl diphosphate sy 100.0 4.4E-53 1.5E-57 379.7 17.4 205 2-267 47-289 (297)
34 3lom_A Geranyltranstransferase 100.0 1E-52 3.6E-57 379.6 18.3 206 2-266 56-302 (313)
35 3pde_A Farnesyl-diphosphate sy 100.0 1.1E-52 3.9E-57 378.2 17.2 209 2-266 54-299 (309)
36 2ftz_A Geranyltranstransferase 100.0 4E-52 1.4E-56 371.3 20.2 202 2-265 52-284 (284)
37 3ipi_A Geranyltranstransferase 100.0 4.5E-52 1.5E-56 372.8 17.6 210 2-266 48-283 (295)
38 2q58_A Fragment, farnesyl pyro 100.0 1.6E-51 5.4E-56 380.2 17.3 238 3-266 78-359 (368)
39 3llw_A Geranyltranstransferase 100.0 1.8E-50 6E-55 364.7 21.4 214 2-266 54-304 (311)
40 3npk_A Geranyltranstransferase 100.0 1.2E-49 4E-54 356.3 20.6 205 2-264 45-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 2.7E-49 9.4E-54 353.9 16.4 203 2-266 55-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 4.3E-47 1.5E-51 340.8 21.0 194 3-267 59-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 4.8E-42 1.6E-46 305.3 12.2 158 2-176 51-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 1.7E-38 5.8E-43 282.2 18.8 137 2-155 46-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 8.5E-38 2.9E-42 277.6 18.2 137 2-156 51-223 (273)
46 4hd1_A Squalene synthase HPNC; 94.7 1 3.5E-05 39.4 14.9 84 138-243 154-237 (294)
47 3vj8_A Squalene synthase; farn 90.4 0.78 2.7E-05 41.2 7.8 119 102-243 138-256 (343)
48 3acx_A Dehydrosqualene synthas 89.5 1.9 6.6E-05 37.5 9.5 115 102-244 129-243 (293)
49 4f62_A Geranyltranstransferase 71.5 7.5 0.00025 34.4 6.3 65 33-97 202-278 (317)
50 1rtr_A Geranyltranstransferase 69.6 7.4 0.00025 34.0 5.8 65 32-96 197-273 (301)
51 3uca_A Geranyltranstransferase 68.6 8.9 0.0003 34.0 6.1 65 33-97 231-307 (324)
52 3lsn_A Geranyltranstransferase 68.3 7 0.00024 34.3 5.4 65 33-97 203-279 (304)
53 3rmg_A Octaprenyl-diphosphate 68.3 33 0.0011 30.3 9.9 46 129-186 63-108 (334)
54 1di1_A Aristolochene synthase; 67.0 57 0.002 27.5 11.0 61 102-162 154-214 (300)
55 2q80_A Geranylgeranyl pyrophos 66.4 64 0.0022 27.9 12.0 46 128-185 40-85 (301)
56 3mzv_A Decaprenyl diphosphate 65.7 28 0.00097 30.8 8.9 48 125-184 65-112 (341)
57 3p8r_A Geranyltranstransferase 64.8 7.4 0.00025 34.1 4.8 63 35-97 211-285 (302)
58 3ts7_A Geranyltranstransferase 64.0 8.4 0.00029 34.1 5.0 65 33-97 209-285 (324)
59 4fp4_A Polyprenyl synthetase; 63.8 49 0.0017 28.6 9.8 42 132-185 67-108 (285)
60 2h8o_A Geranyltranstransferase 61.2 10 0.00035 33.7 5.1 65 32-96 241-317 (335)
61 3p8l_A Geranyltranstransferase 60.7 11 0.00039 32.9 5.2 63 33-95 206-280 (302)
62 3lom_A Geranyltranstransferase 58.7 14 0.00048 32.5 5.5 65 33-97 210-286 (313)
63 2ftz_A Geranyltranstransferase 54.7 1E+02 0.0035 26.4 10.8 45 129-185 62-108 (284)
64 3pde_A Farnesyl-diphosphate sy 54.3 19 0.00066 31.5 5.6 61 35-95 207-279 (309)
65 3nf2_A Putative polyprenyl syn 52.9 59 0.002 28.9 8.7 50 124-185 65-114 (352)
66 3aqb_B Component B of hexapren 52.0 63 0.0021 28.2 8.7 44 129-184 60-103 (325)
67 1v4e_A Octoprenyl-diphosphate 51.9 75 0.0026 27.5 9.0 39 135-185 63-101 (299)
68 3pko_A Geranylgeranyl pyrophos 48.8 92 0.0032 27.3 9.3 44 130-185 73-116 (334)
69 3ipi_A Geranyltranstransferase 48.8 33 0.0011 29.7 6.2 41 33-73 187-233 (295)
70 2e8v_A Geranylgeranyl pyrophos 46.8 1.5E+02 0.0051 26.0 10.4 46 128-185 55-100 (340)
71 1wy0_A Geranylgeranyl pyrophos 46.0 78 0.0027 27.8 8.4 46 129-186 62-107 (342)
72 3m0g_A Farnesyl diphosphate sy 44.9 19 0.00064 31.4 4.0 61 37-97 200-272 (297)
73 3kb9_A EPI-isozizaene synthase 44.4 1.4E+02 0.0048 26.4 9.9 59 102-161 208-269 (382)
74 4dhd_A Polyprenyl synthetase; 41.9 1E+02 0.0035 27.4 8.5 39 135-185 67-105 (358)
75 2azj_A Geranylgeranyl pyrophos 40.6 1.4E+02 0.0048 25.6 8.9 45 129-185 65-109 (289)
76 1wmw_A Geranylgeranyl diphosph 40.1 1E+02 0.0034 26.9 8.1 48 125-184 51-98 (330)
77 1rqj_A Geranyltranstransferase 40.0 20 0.00068 31.2 3.4 64 32-95 202-277 (299)
78 3lmd_A Geranylgeranyl pyrophos 37.8 81 0.0028 28.1 7.1 49 125-185 86-135 (360)
79 3llw_A Geranyltranstransferase 33.5 1.5E+02 0.0052 25.7 8.1 40 133-184 74-115 (311)
80 3oyr_A Trans-isoprenyl diphosp 31.7 67 0.0023 28.4 5.5 52 104-157 58-109 (345)
81 3npk_A Geranyltranstransferase 27.2 2.9E+02 0.01 23.6 9.6 41 132-184 59-101 (291)
82 1ps1_A Pentalenene synthase; a 27.0 2.9E+02 0.0099 23.4 9.7 59 102-161 166-227 (337)
83 3n0f_A Isoprene synthase; terp 26.9 4.1E+02 0.014 25.1 10.5 57 102-160 395-456 (555)
84 3g4d_A (+)-delta-cadinene synt 24.9 4.4E+02 0.015 24.8 10.9 58 102-161 397-459 (554)
85 3aqb_A Component A of hexapren 24.2 1.1E+02 0.0036 23.6 4.6 39 77-115 72-113 (147)
86 3kra_B Geranyl diphosphate syn 23.6 2.7E+02 0.0094 23.4 7.8 51 104-156 33-83 (274)
87 3bny_A Aristolochene synthase; 22.7 3.4E+02 0.012 22.8 12.9 60 102-161 168-227 (320)
88 3v1v_A 2-MIB synthase, 2-methy 21.2 2.6E+02 0.0089 25.4 7.6 74 102-187 286-363 (433)
No 1
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=9.4e-61 Score=439.36 Aligned_cols=266 Identities=68% Similarity=0.994 Sum_probs=214.4
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|...+.+.++.......++..+.++.+|+++|+||+||||||||||+|++|||+||+|.+||+++|||+|
T Consensus 56 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 135 (348)
T 3apz_A 56 TILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAG 135 (348)
T ss_dssp HHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHH
Confidence 47888999988532210000000011234456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.++++.+.+++ +++|++|+++|||+||++||++|++++|.+++.
T Consensus 136 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 215 (348)
T 3apz_A 136 DFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEV 215 (348)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHH
Confidence 99999999999887765433 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLG 214 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~ 214 (267)
.+.+.+||.++|++|||+||++|++++++.+|||.|+||++||+|||+++|++..+++++++.+...++++++++++++.
T Consensus 216 ~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~ 295 (348)
T 3apz_A 216 AVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLG 295 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999888877889999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 215 KSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 215 ~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++|+++++++.+++|.++|++.|+.+|.++.......++.|..|++++++|++
T Consensus 296 ~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 296 KSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999987511111168899999999999985
No 2
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=3.8e-61 Score=440.18 Aligned_cols=242 Identities=30% Similarity=0.422 Sum_probs=192.7
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. ..+.++++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 71 ~l~ll~~~~~g~-----------------~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 133 (345)
T 3oyr_A 71 LMTVAAARLAGA-----------------DNDHFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVG 133 (345)
T ss_dssp HHHHHHHHHTTC-----------------CSSTHHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHH
Confidence 378889999985 225688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++||+.+++..+++++ +++|++|+.+|||+||++||++|++++|++++.
T Consensus 134 D~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 213 (345)
T 3oyr_A 134 DFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAK 213 (345)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999988775543 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-hH----HHHHhccCCCChhhHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQ----LRAFINSSSDNPANVDVI 209 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~~----~~~~l~~~~~~~~~~~~i 209 (267)
.+.+++||+++|++|||+||++|++++++.+|||+|+||++||+|||++++++.. ++ +++++.+...++++++++
T Consensus 214 ~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v 293 (345)
T 3oyr_A 214 SEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRA 293 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999874 33 445556555677899999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 210 LEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 210 ~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
+++++++|+++++++.+++|.++|++.|+.+|+++ .|+.|.+|++++++|+
T Consensus 294 ~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 294 RELIIGSGALDATLDLAADYADKAKAALAMFPAND------WREALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988 9999999999999996
No 3
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=9.9e-61 Score=437.27 Aligned_cols=243 Identities=27% Similarity=0.443 Sum_probs=208.5
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. ..+.+.++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 59 ~l~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~G 121 (341)
T 3mzv_A 59 MLTLAAARLVGY-----------------GGPFHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVG 121 (341)
T ss_dssp HHHHHHHHHTTC-----------------CCSHHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHH
Confidence 468888898875 235789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++||+.+++..+++++ +++|++|+.+|||+||++||++|++++|++++.
T Consensus 122 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 201 (341)
T 3mzv_A 122 DYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQ 201 (341)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999987765433 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh-----HHHHHhccCCCChhhHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----QLRAFINSSSDNPANVDVI 209 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~-----~~~~~l~~~~~~~~~~~~i 209 (267)
.+.++.||+++|++|||+||++|++++++.+||+.|+||++||+|||++++++..+ .+++++.+...++++++++
T Consensus 202 ~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i 281 (341)
T 3mzv_A 202 VQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHA 281 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999753 2456666666678899999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 210 LEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 210 ~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++|+++++++.+++|.++|++.|+.+|+++ .|+.|.+|++++++|+.
T Consensus 282 ~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 282 MALMTKHGTLEATRLAAIGWTDTARKALAKLPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHTGGGC
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999988 99999999999999963
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-60 Score=433.97 Aligned_cols=242 Identities=29% Similarity=0.446 Sum_probs=209.2
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++++|+++|+||+||||||||||+|++|||+||+|.+||+++|||+|
T Consensus 53 ~l~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~G 115 (334)
T 3rmg_A 53 ILVLLVARLYGA-----------------VTPATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAG 115 (334)
T ss_dssp HHHHHHHHHHSC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------ChHHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHH
Confidence 368888888875 347899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.+++..+++++ +++|++|+.+|||+||++||++|++++|++++.
T Consensus 116 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 195 (334)
T 3rmg_A 116 DYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEE 195 (334)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999887665433 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-----hHHHHHhccCCCChhhHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-----PQLRAFINSSSDNPANVDVI 209 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-----~~~~~~l~~~~~~~~~~~~i 209 (267)
.+.++.||.++|++|||+||++|++ +++.+|||+|+||++||+|||++++++.. +.+.+++.+...++++++++
T Consensus 196 ~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v 274 (334)
T 3rmg_A 196 VAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRL 274 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999 57889999999999999999999999874 24667777777889999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 210 LEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 210 ~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++|+++++++.+++|.++|++.|+.+|+++ .|+.|..|++++++|++
T Consensus 275 ~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 275 IEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999888 89999999999999964
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=2.7e-60 Score=435.83 Aligned_cols=243 Identities=26% Similarity=0.347 Sum_probs=219.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 60 ~l~ll~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~G 122 (352)
T 3nf2_A 60 ALAVLSAEVTGA-----------------APEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVG 122 (352)
T ss_dssp HHHHHHHHTTTC-----------------CGGGGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHH
Confidence 367888888875 335689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCh---hHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCC
Q 024463 82 DLLISRALVALASLKHT---EVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQR 131 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~---~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~ 131 (267)
|||+++|++.+++.+++ +++ +++|++|+++|||+||++||++|++++|++
T Consensus 123 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~ 202 (352)
T 3nf2_A 123 DALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGAD 202 (352)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCC
Confidence 99999999999998775 222 688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-h---HHHHHhccC-------C
Q 024463 132 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-P---QLRAFINSS-------S 200 (267)
Q Consensus 132 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~---~~~~~l~~~-------~ 200 (267)
++..+.++.||++||++|||+||++|++++++.+|||.|+||++||+|||++++++.. + ++.+++.+. .
T Consensus 203 ~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~ 282 (352)
T 3nf2_A 203 ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFAN 282 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999974 3 455666543 2
Q ss_pred CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 201 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 201 ~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
.+++++++++++++++|+++++++++++|.++|++.|+.+|++.. .|+.|..|++++++|+
T Consensus 283 ~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~~-----~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 283 FSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDR-----VRDRFTALADFVVVRK 343 (352)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHH-----HHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCcH-----HHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999999999999998432 8999999999999986
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=4.4e-60 Score=434.88 Aligned_cols=243 Identities=30% Similarity=0.467 Sum_probs=204.5
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.++++.++++|. +..+.++++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 80 ~L~ll~~~~~~~----------------~~~~~~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaG 143 (360)
T 3lmd_A 80 MFALLASEFGEK----------------PLSENVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAG 143 (360)
T ss_dssp HHHHHHHTTSSS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----------------CChHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHH
Confidence 366777777762 1346889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH--------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHH
Q 024463 82 DLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 135 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~--------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~ 135 (267)
|||+++||+.++++++ +.+ +++|++|+++|||+||++||++|++++|++++..
T Consensus 144 D~Ll~~A~~~l~~~~~-~~~~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~ 222 (360)
T 3lmd_A 144 DILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHI 222 (360)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999887653 322 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC----hHHHHHhccCCCChhhHHHHHH
Q 024463 136 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF----PQLRAFINSSSDNPANVDVILE 211 (267)
Q Consensus 136 ~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~----~~~~~~l~~~~~~~~~~~~i~~ 211 (267)
+.+++||++||++|||+||++|++++++.+||+.|+||++||+|||++++++.. +++++++.+...++++++++++
T Consensus 223 ~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ 302 (360)
T 3lmd_A 223 DALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLE 302 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 3577788877778899999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 212 YLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 212 ~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++|+++++++.+++|.++|++.|+.+|+++ .++.|.+|++++++|+.
T Consensus 303 ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 303 LLSQSGGRQAALDEVYRYMDIANAELDRLPDST------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHHHHTTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999987 89999999999999963
No 7
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=5.2e-60 Score=431.56 Aligned_cols=231 Identities=29% Similarity=0.499 Sum_probs=215.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC-hhHH--------
Q 024463 31 LRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH-TEVI-------- 101 (267)
Q Consensus 31 ~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~-~~~~-------- 101 (267)
.++.+.++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++..+ ++.+
T Consensus 74 ~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 153 (334)
T 3pko_A 74 TPAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMH 153 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999988654 4322
Q ss_pred -------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCc
Q 024463 102 -------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 162 (267)
Q Consensus 102 -------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 162 (267)
+++|++|+.+|||+||++||++|++++|++++..+.+++||+++|++|||+||++|+++++
T Consensus 154 ~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~ 233 (334)
T 3pko_A 154 RILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDP 233 (334)
T ss_dssp HHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccCcccHHHHHHhhhCh-HHHHHhc-cCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcC
Q 024463 163 ASLGKASLTDLRNGIITAPILFAMEEFP-QLRAFIN-SSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 240 (267)
Q Consensus 163 ~~~GK~~~~Dl~~gk~Tlp~l~al~~~~-~~~~~l~-~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~l 240 (267)
+.+|||+|+||++||+|||++++++..+ ++++++. +...+++++++++++++++|+++++++.++++.++|++.|+.+
T Consensus 234 ~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~l 313 (334)
T 3pko_A 234 KRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQL 313 (334)
T ss_dssp TSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999865 6777774 4446788999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 241 PETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 241 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
|.++ .++.|..|++++++|++
T Consensus 314 p~~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 314 PVGS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp CSSH------HHHHHHHHHHHHTTCC-
T ss_pred CCcH------HHHHHHHHHHHHHhccC
Confidence 9987 89999999999999975
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-59 Score=431.59 Aligned_cols=242 Identities=31% Similarity=0.407 Sum_probs=216.3
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 82 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd 82 (267)
+++++++++|. .++.++++|+++|+||+||||||||||+|++|||+||+|.+||+++|||+||
T Consensus 53 l~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD 115 (342)
T 1wy0_A 53 VVLTSTEAVGG-----------------DPLRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGD 115 (342)
T ss_dssp HHHHHTTTTTS-----------------CGGGGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHH
Confidence 56777777764 2356789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC-----ChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCC
Q 024463 83 LLISRALVALASLK-----HTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQ 130 (267)
Q Consensus 83 ~Ll~~a~~~l~~~~-----~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~ 130 (267)
||+++||+.+++.. +.+++ +++|++|+++|||+||.+||++|++++|+
T Consensus 116 ~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~ 195 (342)
T 1wy0_A 116 LLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTD 195 (342)
T ss_dssp HHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 99999999999873 22221 68899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-hHHHHHhccCCC--------
Q 024463 131 REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSSD-------- 201 (267)
Q Consensus 131 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~~~~~~l~~~~~-------- 201 (267)
+++..+.+.+||.++|++|||+||++|++++++.+|||.|+||++||+|||++++++.. +..++.+.+.+.
T Consensus 196 ~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~ 275 (342)
T 1wy0_A 196 NEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKG 275 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999875 344444443332
Q ss_pred -------ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 202 -------NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 202 -------~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+.++++++++++.++|+++++++.++++.++|++.|+.+|.++ .++.|..+++++++|++
T Consensus 276 ~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 276 RGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp ------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred ccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 3568899999999999999999999999999999999999877 89999999999999975
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=4.4e-59 Score=424.54 Aligned_cols=241 Identities=30% Similarity=0.470 Sum_probs=219.2
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++++|+++|++|+||||||||||+|++|||+||+|.+||+++|||+|
T Consensus 50 ~l~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 112 (325)
T 3aqb_B 50 MFVLLSGFLNDT-----------------QKDDLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTG 112 (325)
T ss_dssp HHHHHHHTTSSC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------ChHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHH
Confidence 367778888764 235789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH---------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 82 DLLISRALVALASLKHTEVI---------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~---------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
|||+++|++.+++..+++++ +++|++|+.+|||+||++||++|++++|++++.
T Consensus 113 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 192 (325)
T 3aqb_B 113 HFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQS 192 (325)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999887665433 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh-----HHH---HHhccCCCChhhH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-----QLR---AFINSSSDNPANV 206 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~-----~~~---~~l~~~~~~~~~~ 206 (267)
.+.+.+||.++|++|||+||++|++++++.+|||.|+||++||+|||++++++..+ .+. +++.+... ++++
T Consensus 193 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 271 (325)
T 3aqb_B 193 TYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSD-DEVY 271 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCC-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCC-HHHH
Confidence 99999999999999999999999999999999999999999999999999998743 244 55544332 6789
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 207 DVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 207 ~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++ +++++++.++++.++|++.|+.+|.++ .|+.|..+++++++|++
T Consensus 272 ~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 272 QYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhCcC
Confidence 9999999999 999999999999999999999999887 89999999999999975
No 10
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3.9e-58 Score=419.10 Aligned_cols=240 Identities=27% Similarity=0.303 Sum_probs=211.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++.+|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 45 ~l~l~~~~~~~~-----------------~~~~~~~~A~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 107 (330)
T 1wmw_A 45 LLTVYSALAHGA-----------------PLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAG 107 (330)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHH
Confidence 367888888864 346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC-----hhHH-----------------------------HHHHHHHHhchHHHH-HHHHHHHHHH
Q 024463 82 DLLISRALVALASLKH-----TEVI-----------------------------MECYMQKTYNKTAAL-VSNSCKAVAY 126 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~-----~~~~-----------------------------~~~y~~~~~~KTa~l-~~~~~~~ga~ 126 (267)
|||+++|++.+++..+ .+++ +++|++|+++|||+| |++||++|++
T Consensus 108 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~ 187 (330)
T 1wmw_A 108 DAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGAL 187 (330)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 9999999998876422 2221 367999999999999 9999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh-H----HHHHhccCCC
Q 024463 127 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP-Q----LRAFINSSSD 201 (267)
Q Consensus 127 la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~-~----~~~~l~~~~~ 201 (267)
++|.+++.. +++||.++|++|||+||++|++++++ +||+.|+||++||+|||++++++..+ + +.+.+.+...
T Consensus 188 lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~ 264 (330)
T 1wmw_A 188 LAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPRE 264 (330)
T ss_dssp HTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGG
T ss_pred HcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCccc
Confidence 999988766 99999999999999999999999999 99999999999999999999998753 3 3344443332
Q ss_pred C--hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhh----cCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 202 N--PANVDVILEYLGKSHGIQRTTELALKHASLAAAAID----SLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 202 ~--~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~----~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+ +++++++++++.++|+++++++.+++|.++|++.|+ .+|.++ .++.|..+++++++|++
T Consensus 265 ~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 265 AKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp GSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 3 678999999999999999999999999999999999 999876 89999999999999975
No 11
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.3e-57 Score=419.10 Aligned_cols=240 Identities=25% Similarity=0.337 Sum_probs=210.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.++++.++++|. .++.++.+|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 51 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~G 113 (358)
T 4dhd_A 51 LLTLAAAEAVSG-----------------QWRPALPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVG 113 (358)
T ss_dssp HHHHHHHHHHHS-----------------CCGGGHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHH
Confidence 367888888875 335688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCh-hH---------------------------------------HHHHHHHHHhchHHHHHHHHH
Q 024463 82 DLLISRALVALASLKHT-EV---------------------------------------IMECYMQKTYNKTAALVSNSC 121 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~-~~---------------------------------------~~~~y~~~~~~KTa~l~~~~~ 121 (267)
|||+++|++.+...... ++ .+++|++|+.+|||+||++||
T Consensus 114 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~ 193 (358)
T 4dhd_A 114 IWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA 193 (358)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH
Confidence 99999999988654321 11 146799999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcc-cHHHHHHhhhC-h----HHHHH
Q 024463 122 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII-TAPILFAMEEF-P----QLRAF 195 (267)
Q Consensus 122 ~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~-Tlp~l~al~~~-~----~~~~~ 195 (267)
++|++++|++++..+.+++||.++|++|||+||++|++++++.+|||.|+||++||+ |||++++++.. + .+.++
T Consensus 194 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~ 273 (358)
T 4dhd_A 194 KWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEI 273 (358)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999974 3 36677
Q ss_pred hccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 196 INSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 196 l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+.+...+.+++++++++++++|+++++++.++++.++|++.|+.+|++ . .|.+|++++++|++
T Consensus 274 l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~-------~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 274 LAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNN-------G--TLKELLDFIVAREY 336 (358)
T ss_dssp HHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC-------H--HHHHHHHHHTTTTT
T ss_pred HcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCC-------H--HHHHHHHHHHhccc
Confidence 777777889999999999999999999999999999999999999943 2 89999999999974
No 12
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=3.5e-57 Score=418.84 Aligned_cols=248 Identities=25% Similarity=0.321 Sum_probs=204.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhc----------
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSV---------- 71 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~---------- 71 (267)
.++++.++++|...+ .+...+.++++|+++|+||++|||||||||+|++|||+||+|++
T Consensus 68 ~l~l~~~~~~g~~~~-----------~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~ 136 (380)
T 3lk5_A 68 LYAWAGFLAAQGHKN-----------SSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNF 136 (380)
T ss_dssp HHHHHHHHHHHTTSC-----------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHcCCCcc-----------ccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhccc
Confidence 467888888875211 12356889999999999999999999999999999999999997
Q ss_pred ------cchhHHHHHHHHHHHHHHHHHHcCCCh-h----HH---------------------------HHHHHHHHhchH
Q 024463 72 ------MGNKLAILAGDLLISRALVALASLKHT-E----VI---------------------------MECYMQKTYNKT 113 (267)
Q Consensus 72 ------~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~-~----~~---------------------------~~~y~~~~~~KT 113 (267)
||+++|||+||||+++|++.+++...+ + ++ +++|++|+++||
T Consensus 137 ~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KT 216 (380)
T 3lk5_A 137 EGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKT 216 (380)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred ccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhc
Confidence 699999999999999999999886532 1 10 578999999999
Q ss_pred HHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC---
Q 024463 114 AAL-VSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF--- 189 (267)
Q Consensus 114 a~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~--- 189 (267)
|+| |++||++|++++|++++..+.++.||++||++|||+||++|++++++.+|||.|+||++||+|||++++++..
T Consensus 217 a~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~ 296 (380)
T 3lk5_A 217 AAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQ 296 (380)
T ss_dssp HHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccC
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -hH----HHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHh
Q 024463 190 -PQ----LRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIIT 264 (267)
Q Consensus 190 -~~----~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~ 264 (267)
|+ +++++.+ ..+++++++++++++++|+++++++++++|.++|++.|+.+|.++. .|+.|.+|++++..
T Consensus 297 ~~~~~~~L~~~l~~-~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~-----~r~~L~~La~~~~~ 370 (380)
T 3lk5_A 297 SPEAATAIRAGVGK-VTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRALAIRSTE 370 (380)
T ss_dssp CHHHHHHHHHHTTT-CCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH-----HHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHCC-CCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHH
Confidence 33 3444432 3467889999999999999999999999999999999999996532 89999999999998
Q ss_pred cc
Q 024463 265 RN 266 (267)
Q Consensus 265 R~ 266 (267)
|.
T Consensus 371 ~~ 372 (380)
T 3lk5_A 371 RR 372 (380)
T ss_dssp --
T ss_pred hh
Confidence 74
No 13
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.2e-57 Score=410.91 Aligned_cols=219 Identities=27% Similarity=0.423 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCChhHH-----------
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKHTEVI----------- 101 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~~~~~----------- 101 (267)
+++.++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+||||+++||+.+++.+ ++++
T Consensus 57 ~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~ 135 (315)
T 3tc1_A 57 DKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLS 135 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999998876 4332
Q ss_pred ----------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCcccc
Q 024463 102 ----------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASL 165 (267)
Q Consensus 102 ----------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 165 (267)
+++|++|+++|||+||++||++|++++|.+ .+.++.||.++|++|||+||++|++++++.+
T Consensus 136 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~ 212 (315)
T 3tc1_A 136 RGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTL 212 (315)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHh
Confidence 678999999999999999999999999998 5789999999999999999999999999999
Q ss_pred CCCcccccccCcccHHHHHHhhhC-hHHH----HHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcC
Q 024463 166 GKASLTDLRNGIITAPILFAMEEF-PQLR----AFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 240 (267)
Q Consensus 166 GK~~~~Dl~~gk~Tlp~l~al~~~-~~~~----~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~l 240 (267)
|||+|+||++||+|||++++++.. ++.+ +++.+. ++++++++++++.++|+++++++.+++|.++|++.|+.+
T Consensus 213 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~--~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~l 290 (315)
T 3tc1_A 213 GKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQD--SHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGE 290 (315)
T ss_dssp CCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999974 4444 444444 678899999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHH
Q 024463 241 PETHDVDATNARTALVHITQKII 263 (267)
Q Consensus 241 p~~~~~~~~~~~~~L~~l~~~~~ 263 (267)
|+++ .|+.|..+++++.
T Consensus 291 p~s~------~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 291 NNLI------LEKLAQDVISRTF 307 (315)
T ss_dssp CCHH------HHHHHHHHHCC--
T ss_pred CCcH------HHHHHHHHHHHHH
Confidence 9988 9999999998765
No 14
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.3e-57 Score=407.82 Aligned_cols=235 Identities=24% Similarity=0.284 Sum_probs=203.3
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 82 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd 82 (267)
+++++++++|. .++.+.++|+++|+||+||||||||||+|++|||+||+|.+||+++|||+||
T Consensus 32 l~l~~~~~~~~-----------------~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD 94 (301)
T 2q80_A 32 LSQAFNHWLKV-----------------PEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSAN 94 (301)
T ss_dssp HHHHHHHHHCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcchhhccCcHHHHHHHH
Confidence 67778888874 2356899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHH----------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHH
Q 024463 83 LLISRALVALASLKHTEVI----------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEV 134 (267)
Q Consensus 83 ~Ll~~a~~~l~~~~~~~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~ 134 (267)
||+++|++.+++.++++.+ +++|++|+++|||+||.++|++|+++++.++
T Consensus 95 ~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~-- 172 (301)
T 2q80_A 95 YVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE-- 172 (301)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH--
Confidence 9999999999987654322 5789999999999999999999999999873
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhCh---HHHHHhccCCCChhhHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFP---QLRAFINSSSDNPANVDVILE 211 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~---~~~~~l~~~~~~~~~~~~i~~ 211 (267)
.+.+||.++|++|||+||++|++++++.+||+.|+||++||+|||++++++..| .+.+++.+...+.+..+.+++
T Consensus 173 --~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 250 (301)
T 2q80_A 173 --DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVH 250 (301)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999998754 366677665544444556999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 212 YLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 212 ~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++|+++++++.+++|.++|++.|+.+|.++ .|..+++++..|.+
T Consensus 251 ~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 251 YLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALVKHLSKMFK 297 (301)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHHHHTTCC
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHHhc
Confidence 999999999999999999999999999999765 39999999988754
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=3.3e-57 Score=414.25 Aligned_cols=243 Identities=21% Similarity=0.318 Sum_probs=184.2
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 82 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd 82 (267)
+++++++++|. ..+.+.++|+++|+||+||||||||||+|++|||+||+|.+||+++|||+||
T Consensus 47 l~l~~~~~~~~-----------------~~~~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD 109 (340)
T 2e8v_A 47 LIVQINRVMNL-----------------PKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTAN 109 (340)
T ss_dssp HHHHHHHHHCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHH
Confidence 56777888864 2356899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChh-----HH------------------------------HHHHHHHHhchHHHHHHHHHHHHHHH
Q 024463 83 LLISRALVALASLKHTE-----VI------------------------------MECYMQKTYNKTAALVSNSCKAVAYL 127 (267)
Q Consensus 83 ~Ll~~a~~~l~~~~~~~-----~~------------------------------~~~y~~~~~~KTa~l~~~~~~~ga~l 127 (267)
||+++|++.+++..+++ ++ +++|++|+++|||+||+++|++|+++
T Consensus 110 ~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~l 189 (340)
T 2e8v_A 110 YMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEAL 189 (340)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999998876644 22 46799999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChH---------HHHHhcc
Q 024463 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQ---------LRAFINS 198 (267)
Q Consensus 128 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~---------~~~~l~~ 198 (267)
+|.++ ..+.+.+||+++|++|||+||++|++++++.+|||+|+||++||+|||++++++..+. +.+++.+
T Consensus 190 ag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~ 268 (340)
T 2e8v_A 190 SPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLL 268 (340)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhC
Confidence 99887 4788999999999999999999999999999999999999999999999999986432 5566666
Q ss_pred CCCChhhHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH-----hhcCCCCCCccchHHHHHHHHHHHHHHh
Q 024463 199 SSDNPANVDVILEYLG-KSHGIQRTTELALKHASLAAAA-----IDSLPETHDVDATNARTALVHITQKIIT 264 (267)
Q Consensus 199 ~~~~~~~~~~i~~~i~-~~g~i~~a~~~~~~~~~~a~~~-----L~~lp~~~~~~~~~~~~~L~~l~~~~~~ 264 (267)
...+.+..++++++++ ++|+++++++++++|.++|++. |+.+|+++.. ....|+.|..|++++.+
T Consensus 269 ~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 269 RTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp TCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 5555555568999999 9999999999999999999999 9999977510 01168899999998864
No 16
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.9e-56 Score=402.47 Aligned_cols=218 Identities=26% Similarity=0.431 Sum_probs=199.2
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|.. .++.+.++|+++|++|++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 46 ~l~l~~~~~~g~~----------------~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~G 109 (299)
T 1v4e_A 46 RLSILSFKNRGVE----------------IGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 109 (299)
T ss_dssp HHHHHHHHHHTCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCC----------------ChhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHH
Confidence 3688888888741 125688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH--------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHH
Q 024463 82 DLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 135 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~--------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~ 135 (267)
|||+++||+.+++..+++++ +++|++|+.+|||+||++||++|++++|.++
T Consensus 110 D~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--- 186 (299)
T 1v4e_A 110 DLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG--- 186 (299)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---
Confidence 99999999999887665433 5789999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHh
Q 024463 136 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 215 (267)
Q Consensus 136 ~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~ 215 (267)
+.+++||.++|++|||+||++|++++ +.+|||.|+||++||+|||++++++..+.+++++.+ ++++++++++++
T Consensus 187 ~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~ 260 (299)
T 1v4e_A 187 EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMRE 260 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHH
Confidence 78999999999999999999999999 999999999999999999999999987667777755 578899999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 216 SHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 216 ~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
+|+++++++.+++|.++|.+.|+.+|...
T Consensus 261 ~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 261 KGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999876
No 17
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=9.6e-56 Score=408.04 Aligned_cols=253 Identities=16% Similarity=0.137 Sum_probs=213.6
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccch--hHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGN--KLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~--~~Ai~ 79 (267)
.+++++++++|...+. ..+...+..+.+..+|+++|+||++|||||||||+|++|||+||+|.+||+ ++|||
T Consensus 53 ~l~l~~~~~~~~~~~~------~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail 126 (362)
T 1yhl_A 53 MTVVNVAEGFLAVTQH------DEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAIN 126 (362)
T ss_dssp HHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHH
T ss_pred HHHHHHHHHhCCCcCC------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHH
Confidence 3678888998752110 000001112333348899999999999999999999999999999999999 58999
Q ss_pred HHHHHHHHHHHHHHcCC-----ChhH-------------------------------------------HHHHHHHHHhc
Q 024463 80 AGDLLISRALVALASLK-----HTEV-------------------------------------------IMECYMQKTYN 111 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~-----~~~~-------------------------------------------~~~~y~~~~~~ 111 (267)
+||||++.+++.+++.. +.++ .+++|++|+++
T Consensus 127 ~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 206 (362)
T 1yhl_A 127 DGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKY 206 (362)
T ss_dssp HHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHh
Confidence 99999999998887641 1111 13679999999
Q ss_pred hHHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC
Q 024463 112 KTAAL-VSNSCKAVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF 189 (267)
Q Consensus 112 KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~ 189 (267)
|||+| |++||++|++++| .+++..+.+++||.++|++|||+||++|++++++.+|| .|+||++||+|||++++++..
T Consensus 207 KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~ 285 (362)
T 1yhl_A 207 KTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKA 285 (362)
T ss_dssp HTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhC
Confidence 99999 9999999999999 78888889999999999999999999999999999999 999999999999999999975
Q ss_pred -hHHHHHhccCC--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHH--HHHHHHHHHHHh
Q 024463 190 -PQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNAR--TALVHITQKIIT 264 (267)
Q Consensus 190 -~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~--~~L~~l~~~~~~ 264 (267)
++.++.+.+.+ .+++++++++++++++|++++++++++++.++|++.|+.+|.++ .+ +.|..+++++++
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~~~L~~l~~~i~~ 359 (362)
T 1yhl_A 286 NAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS------PTFAESVAVVWEKTHK 359 (362)
T ss_dssp CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHHHHh
Confidence 44444443322 24678899999999999999999999999999999999999988 78 999999999999
Q ss_pred ccC
Q 024463 265 RNK 267 (267)
Q Consensus 265 R~~ 267 (267)
|+|
T Consensus 360 R~~ 362 (362)
T 1yhl_A 360 RKK 362 (362)
T ss_dssp CCC
T ss_pred ccC
Confidence 986
No 18
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.9e-55 Score=406.96 Aligned_cols=249 Identities=19% Similarity=0.167 Sum_probs=213.8
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchh-HHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNK-LAILA 80 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~-~Ai~~ 80 (267)
.+|+++++++|...+ ......+.+..+|+++|+||++|||||||||+|++|||+||+|++||++ +||+.
T Consensus 83 ~l~l~~~~~~~~~~~----------~~~~~~~~a~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~ 152 (374)
T 2qis_A 83 LTVVVAFRELVEPRK----------QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIND 152 (374)
T ss_dssp HHHHHHHHHHSCGGG----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHH
T ss_pred HHHHHHHHHhCCCCc----------cchHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHH
Confidence 367888899875210 0012234688999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHcC----CC-hhHH--------------------------------HHHHHHHHhchHHHH-HHHHHH
Q 024463 81 GDLLISRALVALASL----KH-TEVI--------------------------------MECYMQKTYNKTAAL-VSNSCK 122 (267)
Q Consensus 81 Gd~Ll~~a~~~l~~~----~~-~~~~--------------------------------~~~y~~~~~~KTa~l-~~~~~~ 122 (267)
||++++.+|+.+++. .. .+++ +++|++|+.+|||+| |++||+
T Consensus 153 g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~ 232 (374)
T 2qis_A 153 ANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIA 232 (374)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHH
Confidence 999999999888753 11 1111 468999999999999 999999
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-hHHHHHhccCC
Q 024463 123 AVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSS 200 (267)
Q Consensus 123 ~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~~~~~~l~~~~ 200 (267)
+|++++| ++++..+.+.+||.++|++|||+||++|++++++.+|| .|+||++||+|||++++++.. ++.++.+.+.+
T Consensus 233 ~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~ 311 (374)
T 2qis_A 233 AAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENY 311 (374)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999 99999999999999999999999999999999999999 999999999999999999975 45555554433
Q ss_pred C--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 201 D--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 201 ~--~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
. ++++++++++++.++|+.++++..++++.++|++.|+.+|.++ .++.|..+++++++|+|
T Consensus 312 ~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 312 GQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFLGLARKIYKRRK 374 (374)
T ss_dssp TCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHHHHHHHHC----
T ss_pred cCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHcCcC
Confidence 2 3678899999999999999999999999999999999999888 78999999999999986
No 19
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=4.9e-55 Score=403.36 Aligned_cols=249 Identities=21% Similarity=0.186 Sum_probs=216.8
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchh-HHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNK-LAILA 80 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~-~Ai~~ 80 (267)
.+|+++++++|...+ ...+..+.+..+|+++|+||++|||||||||+|++|||+||+|++||++ ++|+.
T Consensus 76 ~l~l~~~~~~~~~~~----------~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~d 145 (367)
T 1uby_A 76 LTVVAAYRELSGPGQ----------KDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAIND 145 (367)
T ss_dssp HHHHHHHHHHCCGGG----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHH
T ss_pred HHHHHHHHHhCCCcc----------CChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHH
Confidence 367888888874110 0112335689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHcC-----CChhHH--------------------------------HHHHHHHHhchHHHH-HHHHHH
Q 024463 81 GDLLISRALVALASL-----KHTEVI--------------------------------MECYMQKTYNKTAAL-VSNSCK 122 (267)
Q Consensus 81 Gd~Ll~~a~~~l~~~-----~~~~~~--------------------------------~~~y~~~~~~KTa~l-~~~~~~ 122 (267)
|+++++.+|+.+++. ...+++ +++|++|+.+|||+| |++||+
T Consensus 146 g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~ 225 (367)
T 1uby_A 146 SFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVA 225 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHH
Confidence 999999999888764 111111 468999999999999 999999
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhh-ChHHHHHhccCC
Q 024463 123 AVAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSS 200 (267)
Q Consensus 123 ~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~-~~~~~~~l~~~~ 200 (267)
+|++++| ++++..+.+.+||.++|++|||+||++|++++++.+|| .|+||++||+|||++++++. .++.++.+.+.+
T Consensus 226 ~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~ 304 (367)
T 1uby_A 226 AAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNY 304 (367)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHT
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHh
Confidence 9999999 89999999999999999999999999999999999999 99999999999999999997 455555555433
Q ss_pred C--ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 201 D--NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 201 ~--~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
. +++++++++++++++|+.++++..++++.++|++.|+.+|.++ .++.|..+++++++|+|
T Consensus 305 ~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 305 GRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHHHHHHHHCCCCC
T ss_pred cCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhCcC
Confidence 2 3678899999999999888898999999999999999999887 78999999999999986
No 20
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.4e-54 Score=402.70 Aligned_cols=246 Identities=19% Similarity=0.184 Sum_probs=198.0
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+|++.++++|+.. ..+...+.++.+|++||+||+||||||||||+|++|||+||+|++||+++||++|
T Consensus 85 ~l~l~~~~~~~~~~-----------~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~G 153 (395)
T 3mav_A 85 ILVILIYEYVKNRD-----------INSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVN 153 (395)
T ss_dssp HHHHHHHHHHHC-C-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHH
T ss_pred HHHHHHHHHhCCCC-----------CCcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhh
Confidence 36888999998632 2456778899999999999999999999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHcCC--C---hhH---------------------------------------------------HHH
Q 024463 82 DLLIS--RALVALASLK--H---TEV---------------------------------------------------IME 103 (267)
Q Consensus 82 d~Ll~--~a~~~l~~~~--~---~~~---------------------------------------------------~~~ 103 (267)
|+|+. .++..+.... . .++ .++
T Consensus 154 D~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~ 233 (395)
T 3mav_A 154 DVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFG 233 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHH
T ss_pred hHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHH
Confidence 98774 4455544210 0 010 046
Q ss_pred HHHHHHhchHHHH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccH
Q 024463 104 CYMQKTYNKTAAL-VSNSCKAVAYLSGQR--EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 180 (267)
Q Consensus 104 ~y~~~~~~KTa~l-~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tl 180 (267)
+|++|+++|||+| |.+||.+|++++|.+ +...+.+++||.+||+||||+||++|++++++.+|| +|+||++||+||
T Consensus 234 ~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~ 312 (395)
T 3mav_A 234 VYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTW 312 (395)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchH
Confidence 7999999999999 899999999999875 346789999999999999999999999999999999 699999999999
Q ss_pred HHHHHhhhC-hHHHHHhccCC--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 024463 181 PILFAMEEF-PQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVH 257 (267)
Q Consensus 181 p~l~al~~~-~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~ 257 (267)
|+++|++.. ++.++.+.+.. .+.+.++.+.++++++|+.+++++.++++.++|.+.|+.+|... .+..|..
T Consensus 313 p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~------l~~ll~~ 386 (395)
T 3mav_A 313 PLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKY 386 (395)
T ss_dssp HHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCHH------HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcHH------HHHHHHH
Confidence 999999974 44454444322 35677889999999999999999999999999999999999776 7788888
Q ss_pred HHHHHHhc
Q 024463 258 ITQKIITR 265 (267)
Q Consensus 258 l~~~~~~R 265 (267)
+++.+.++
T Consensus 387 lle~i~~~ 394 (395)
T 3mav_A 387 LLEILFTG 394 (395)
T ss_dssp HHHHC---
T ss_pred HHHHHhcC
Confidence 88877664
No 21
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.3e-54 Score=400.47 Aligned_cols=247 Identities=19% Similarity=0.168 Sum_probs=199.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhH--HHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKL--AIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~--Ai~ 79 (267)
.+|+++++++|.... .....+.+..+|++||+||++|||||||||+|++|||+||+|+.||++. |||
T Consensus 85 ~Lvl~~~~~~g~~~~-----------~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~ 153 (395)
T 2ihi_A 85 ILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVN 153 (395)
T ss_dssp HHHHHHHHHHC---C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-----------ChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHH
Confidence 478899999985211 1234678899999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHcC-C-C---hhH---------------------------------------------------HHH
Q 024463 80 AGDLLISRALVALASL-K-H---TEV---------------------------------------------------IME 103 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~-~-~---~~~---------------------------------------------------~~~ 103 (267)
+||+|++.+++.+++. . . .++ .++
T Consensus 154 ~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~ 233 (395)
T 2ihi_A 154 DVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFG 233 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHH
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHH
Confidence 9999999999887653 1 1 111 136
Q ss_pred HHHHHHhchHHHH-HHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccH
Q 024463 104 CYMQKTYNKTAAL-VSNSCKAVAYLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITA 180 (267)
Q Consensus 104 ~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tl 180 (267)
+|++|+.+|||+| |.+||++|++++|++++. .+.+..||.+||++|||+||++|++++++.+|| .|+||++||+||
T Consensus 234 ~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~ 312 (395)
T 2ihi_A 234 VYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTW 312 (395)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchH
Confidence 7999999999999 999999999999998887 889999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhh-ChHHHHHhccCC--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHH
Q 024463 181 PILFAMEE-FPQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVH 257 (267)
Q Consensus 181 p~l~al~~-~~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~ 257 (267)
|++++++. .++.++.+.+.. .+++++++++++++++|+++++++.++++.++|++.|+.+|.++ .|+.|..
T Consensus 313 p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~r~~L~~ 386 (395)
T 2ihi_A 313 PLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKY 386 (395)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH------HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHH
Confidence 99999998 455555554332 25678999999999999999999999999999999999999987 9999999
Q ss_pred HHHHHHhcc
Q 024463 258 ITQKIITRN 266 (267)
Q Consensus 258 l~~~~~~R~ 266 (267)
|++++++|.
T Consensus 387 l~~~i~~R~ 395 (395)
T 2ihi_A 387 LLEILFTGV 395 (395)
T ss_dssp HHHC-----
T ss_pred HHHHHhccC
Confidence 999999984
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-54 Score=389.94 Aligned_cols=210 Identities=30% Similarity=0.372 Sum_probs=177.4
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.++++|+++|+||++||||||| ||+|++|||+||+|.+||+++||+
T Consensus 48 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIl 110 (301)
T 1rtr_A 48 VLLLLTLDSLNT-----------------EYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAIL 110 (301)
T ss_dssp HHHHHHHHHTTS-----------------CGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHH
Confidence 367888888874 1245788999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-C-C----hhHH----------------------------HHHHHHHHhchHHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASL-K-H----TEVI----------------------------MECYMQKTYNKTAALVSNSCKAVA 125 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~-~-~----~~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga 125 (267)
+||||+++||+.+++. . . .+++ +++|++|+++|||+||++||++|+
T Consensus 111 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga 190 (301)
T 1rtr_A 111 AGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAA 190 (301)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHH
Confidence 9999999999999886 1 1 1111 578999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhh
Q 024463 126 YLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPAN 205 (267)
Q Consensus 126 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~ 205 (267)
+++|++++..+.+++||.++|++|||+||++|++++++.+||++|+|+++||+|||++++
T Consensus 191 ~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a-------------------- 250 (301)
T 1rtr_A 191 DIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLG-------------------- 250 (301)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHH--------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 206 VDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 206 ~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++++++.++++.++|++.|+.+|+++ .++.|.++++++++|++
T Consensus 251 -------------l~~a~~~a~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 251 -------------KDGAEDKLTYHRDAAVDELTQIDEQF------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTSCTTS------CCHHHHHHHHHHHCC--
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhhc
Confidence 56789999999999999999999776 67899999999999964
No 23
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=8.9e-54 Score=386.68 Aligned_cols=208 Identities=29% Similarity=0.404 Sum_probs=165.7
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 51 ~Lvl~~~~~~g~-----------------~~~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIl 113 (317)
T 4f62_A 51 MLTYASAQLVGD-----------------ISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAIL 113 (317)
T ss_dssp HHHHHHHHHHSC-----------------CCHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHH
Confidence 367888888875 3467999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC--h----hHH----------------------------HHHHHHHHhchHHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLKH--T----EVI----------------------------MECYMQKTYNKTAALVSNSCKAVA 125 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~--~----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga 125 (267)
+||+|+++||+.+++..+ + +++ +++|++|+.+|||+||++||++|+
T Consensus 114 aGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga 193 (317)
T 4f62_A 114 AGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGA 193 (317)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999999999999988632 1 111 578999999999999999999999
Q ss_pred HHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChh
Q 024463 126 YLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA 204 (267)
Q Consensus 126 ~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~ 204 (267)
+++| ++++..+.+++||+++|++|||+||++|++++++.+||++|+|+++||+|||+++
T Consensus 194 ~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------------- 253 (317)
T 4f62_A 194 LSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLL-------------------- 253 (317)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHH--------------------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHH--------------------
Confidence 9999 8999899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 205 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 205 ~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.+|.. ++.|.+|++++++|++
T Consensus 254 -------------gle~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 254 -------------GLDGAKALVVRLHEQAIAQISEFGDK--------SQPLTDLANYIIDRNH 295 (317)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHGGGGGG--------GHHHHHHHHHHHC---
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 56889999999999999999999853 4799999999999964
No 24
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=9e-55 Score=400.14 Aligned_cols=237 Identities=17% Similarity=0.158 Sum_probs=207.6
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 82 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd 82 (267)
+|++.++++|... .+..+.+..+|+++|+||++|||||||||+|++|||+||+|++||+.+|||+||
T Consensus 78 l~l~~~~~~g~~~-------------~~~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD 144 (368)
T 2her_A 78 ILVLISSLSSAYS-------------NIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIF 144 (368)
T ss_dssp -CHHHHTTTTCCC-------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-------------cccHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHH
Confidence 4566667765311 125678999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHHHHHHHcC-CC-h--hHH----------------------------H-HHHHHHHhchHHHH-HHHHHHHHH
Q 024463 83 LLI---SRALVALASL-KH-T--EVI----------------------------M-ECYMQKTYNKTAAL-VSNSCKAVA 125 (267)
Q Consensus 83 ~Ll---~~a~~~l~~~-~~-~--~~~----------------------------~-~~y~~~~~~KTa~l-~~~~~~~ga 125 (267)
+|+ +.+++.+.+. .. + +++ . ++|++|+++|||+| |++||++|+
T Consensus 145 ~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa 224 (368)
T 2her_A 145 FLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGL 224 (368)
T ss_dssp HHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHH
Confidence 999 8888766543 21 1 111 1 78999999999999 999999999
Q ss_pred HHhCCCHHH--HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhh-ChHHHHHhccCCCC
Q 024463 126 YLSGQREEV--ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEE-FPQLRAFINSSSDN 202 (267)
Q Consensus 126 ~la~~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~-~~~~~~~l~~~~~~ 202 (267)
+++|++++. .+.++.||.++|++|||+||++|++ .+|| .|+||++||+|||++++++. .|+.++.+.+.+..
T Consensus 225 ~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~ 299 (368)
T 2her_A 225 TLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGK 299 (368)
T ss_dssp HHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTT
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 999998887 8889999999999999999999999 6899 99999999999999999997 46777777665554
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhc
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITR 265 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 265 (267)
++ ++++++++++|+++++++.++++.++|++.|+.+|.++ .|+.|..|+++++++
T Consensus 300 ~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 300 NS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQISEL 354 (368)
T ss_dssp CH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHH
Confidence 44 89999999999999999999999999999999999987 999999999999875
No 25
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=7.1e-54 Score=398.09 Aligned_cols=257 Identities=17% Similarity=0.139 Sum_probs=212.2
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAE----ITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLA 77 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Aa----avEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~A 77 (267)
.+|+++++++|...+..+ +.......++.++++|+ +||+||++|||||||||+|++|||+||+|+.||+++|
T Consensus 75 ~l~l~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~a 150 (390)
T 3dyh_A 75 LTVIDVAESLLSLSPNNN----GEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQ 150 (390)
T ss_dssp HHHHHHHHHTSCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHH
T ss_pred HHHHHHHHHhCCcccccc----ccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHH
Confidence 367888888874110000 00000113456666666 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHcC-CC-h---hHH-------------------------------------------HHHHHH
Q 024463 78 ILAGDLLISRA--LVALASL-KH-T---EVI-------------------------------------------MECYMQ 107 (267)
Q Consensus 78 i~~Gd~Ll~~a--~~~l~~~-~~-~---~~~-------------------------------------------~~~y~~ 107 (267)
|++||+++..+ ++.+++. .+ + +++ +++|++
T Consensus 151 il~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~ 230 (390)
T 3dyh_A 151 CAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKR 230 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHH
Confidence 99999999754 5666542 11 1 111 357999
Q ss_pred HHhchHHHH-HHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 108 KTYNKTAAL-VSNSCKAVAYLSGQREEV-ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 108 ~~~~KTa~l-~~~~~~~ga~la~~~~~~-~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
|+++|||+| |.+||++|++++|++++. .+.+.+||.+||++|||+||++|++++++.+|| .|+||++||+|||+++|
T Consensus 231 i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~a 309 (390)
T 3dyh_A 231 IVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTF 309 (390)
T ss_dssp HHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHH
Confidence 999999999 999999999999998774 788999999999999999999999999999999 99999999999999999
Q ss_pred hhh-ChHHHHHhccCC--CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHH
Q 024463 186 MEE-FPQLRAFINSSS--DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKI 262 (267)
Q Consensus 186 l~~-~~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~ 262 (267)
++. .|+.++.+.+.+ .+++++++++++++++|+++++++.++++.++|++.|+.||.++. ..++.|..|++++
T Consensus 310 l~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~----~~~~~l~~l~~~i 385 (390)
T 3dyh_A 310 LAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSP----GFAASVETLWGKT 385 (390)
T ss_dssp HHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHHH
Confidence 998 466666665544 367789999999999999999999999999999999999998871 0288999999999
Q ss_pred HhccC
Q 024463 263 ITRNK 267 (267)
Q Consensus 263 ~~R~~ 267 (267)
++|+|
T Consensus 386 ~~R~k 390 (390)
T 3dyh_A 386 YKRQK 390 (390)
T ss_dssp TTCCC
T ss_pred HcCCC
Confidence 99987
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=9.1e-54 Score=385.26 Aligned_cols=208 Identities=31% Similarity=0.388 Sum_probs=176.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 50 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIl 112 (304)
T 3lsn_A 50 LLAYAACEALGG-----------------KPEQANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAIL 112 (304)
T ss_dssp HHHHHHHHHTTC-----------------CGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHH
Confidence 367888888875 3356899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC----Chh----HH----------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK----HTE----VI----------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~----~~~----~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||+|+++||+.+++.. +++ .+ +++|++|+.+|||+||++||++
T Consensus 113 aGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ 192 (304)
T 3lsn_A 113 AGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVIL 192 (304)
T ss_dssp HHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999864 221 11 5789999999999999999999
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCC
Q 024463 124 VAYLSGQ-REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDN 202 (267)
Q Consensus 124 ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~ 202 (267)
|++++|+ +++..+.+++||++||++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 193 ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------------------ 254 (304)
T 3lsn_A 193 GALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALL------------------ 254 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHH------------------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHH------------------
Confidence 9999999 888899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.||.. ++.|.+|++++++|++
T Consensus 255 ---------------~l~~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 255 ---------------GLAAAKEYALELRDQALHALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 57889999999999999999999853 4799999999999963
No 27
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=6.8e-54 Score=385.96 Aligned_cols=208 Identities=27% Similarity=0.364 Sum_probs=161.0
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 56 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIl 118 (302)
T 3p8r_A 56 YLVYITGQMLGC-----------------ELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAIL 118 (302)
T ss_dssp HHHHHHHHTTTC-----------------CGGGTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHH
Confidence 367788888875 3456899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC--C--h----hHH----------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK--H--T----EVI----------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~--~--~----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||||+++||+.+++.. + + +++ +++|++|+++|||+||++||++
T Consensus 119 aGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ 198 (302)
T 3p8r_A 119 TGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRL 198 (302)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHH
Confidence 99999999999998864 1 1 011 5789999999999999999999
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCC
Q 024463 124 VAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDN 202 (267)
Q Consensus 124 ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~ 202 (267)
|++++| ++++..+.+++||+++|++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 199 ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------------------ 260 (302)
T 3p8r_A 199 GALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALL------------------ 260 (302)
T ss_dssp HHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHH------------------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHH------------------
Confidence 999999 7888888999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.+|.+. +.|.+|++++++|++
T Consensus 261 ---------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 261 ---------------GLEGAQQKAHTLLQEALLALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 567899999999999999999999764 689999999999975
No 28
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=9.5e-54 Score=387.56 Aligned_cols=208 Identities=28% Similarity=0.370 Sum_probs=172.6
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 80 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIl 142 (324)
T 3uca_A 80 ILMLLSYYIYKS-----------------DYKKILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVL 142 (324)
T ss_dssp HHHHHHHHTTCS-----------------CGGGGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHH
Confidence 367888888875 3357889999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC--C----hhHH-----------------------------HHHHHHHHhchHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK--H----TEVI-----------------------------MECYMQKTYNKTAALVSNSCKAV 124 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~--~----~~~~-----------------------------~~~y~~~~~~KTa~l~~~~~~~g 124 (267)
+||+|+++||+.+++.. + .+++ +++|++|+++|||+||++||++|
T Consensus 143 aGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~G 222 (324)
T 3uca_A 143 AGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSG 222 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999998887632 1 1111 57899999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChh
Q 024463 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA 204 (267)
Q Consensus 125 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~ 204 (267)
++++|++++..+.+++||+++|++|||+||++|++++++.+||++|+|+++||+|||+++
T Consensus 223 a~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------------- 282 (324)
T 3uca_A 223 AVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIF-------------------- 282 (324)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHH--------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 205 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 205 ~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.||.+. +.|.++++++++|++
T Consensus 283 -------------al~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 283 -------------GLEECKKKCVNITEECIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 567899999999999999999999754 789999999999975
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=5.8e-54 Score=386.01 Aligned_cols=209 Identities=31% Similarity=0.402 Sum_probs=173.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|.. ..+.++++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 56 ~L~l~~~~~~g~~----------------~~~~~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIl 119 (302)
T 3p8l_A 56 LLVLTTVAAFQKE----------------METQDYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAIL 119 (302)
T ss_dssp HHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCCC----------------ccHHHHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHH
Confidence 4678888998752 1137899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCh-----hHH----------------------------HHHHHHHHhchHHHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLKHT-----EVI----------------------------MECYMQKTYNKTAALVSNSCKAVAY 126 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~~-----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~ 126 (267)
+||+|+++||+.+++...+ +++ +++|++|+++|||+||++||++|++
T Consensus 120 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~ 199 (302)
T 3p8l_A 120 AGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGV 199 (302)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999999999875321 110 5789999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhH
Q 024463 127 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANV 206 (267)
Q Consensus 127 la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~ 206 (267)
++|++++..+.+++||+++|++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 200 laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------- 257 (302)
T 3p8l_A 200 LANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALL---------------------- 257 (302)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHH----------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCC---CCCccchHHHHHHHHHHHHHHhc
Q 024463 207 DVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPE---THDVDATNARTALVHITQKIITR 265 (267)
Q Consensus 207 ~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~---~~~~~~~~~~~~L~~l~~~~~~R 265 (267)
+++.+++.++++.++|++.|+.||. ++ .++.|.+|++++++|
T Consensus 258 -----------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 258 -----------GIAGAKDALTHQLAEGSAVLEKIKANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC------CHHHHHHHHHHTSCC
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcccccCCh------hHHHHHHHHHHHhhC
Confidence 5678999999999999999999975 55 578999999999887
No 30
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=8.5e-54 Score=387.88 Aligned_cols=208 Identities=29% Similarity=0.333 Sum_probs=175.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. ..+.+.++|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 56 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIl 118 (324)
T 3ts7_A 56 LLTYATGQTIGV-----------------AADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAIL 118 (324)
T ss_dssp HHHHHHHHHHTC-----------------CGGGTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHH
Confidence 367888888875 3356899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC--C--hh----HH----------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK--H--TE----VI----------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~--~--~~----~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||+|+++||+.+++.. + ++ ++ +++|++|+++|||+||++||++
T Consensus 119 aGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ 198 (324)
T 3ts7_A 119 AGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRL 198 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999998864 2 11 11 5789999999999999999999
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCC
Q 024463 124 VAYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDN 202 (267)
Q Consensus 124 ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~ 202 (267)
|++++| ++++..+.+++||++||++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 199 Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~------------------ 260 (324)
T 3ts7_A 199 ACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL------------------ 260 (324)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHH------------------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH------------------
Confidence 999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.+|.+. +.|.+|++++++|++
T Consensus 261 ---------------gle~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 261 ---------------GLSGAKEKAEEMHEAALESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 578899999999999999999998653 789999999999974
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3.2e-53 Score=386.16 Aligned_cols=208 Identities=27% Similarity=0.358 Sum_probs=170.7
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.++++|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 91 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIl 153 (335)
T 2h8o_A 91 FLVIESVALLGG-----------------DAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAIL 153 (335)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHH
Confidence 367888888874 3466899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--C-Ch----hHH----------------------------HHHHHHHHhchHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASL--K-HT----EVI----------------------------MECYMQKTYNKTAALVSNSCKAV 124 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~--~-~~----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~g 124 (267)
+||||+++||+.+++. . .+ +++ +++|++|+++|||+||++||++|
T Consensus 154 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~G 233 (335)
T 2h8o_A 154 AGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAG 233 (335)
T ss_dssp HHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHH
Confidence 9999999999999886 1 11 111 46899999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChh
Q 024463 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA 204 (267)
Q Consensus 125 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~ 204 (267)
++++|++++..+.+.+||+++|++|||+||++|++++++.+||++|+|+++||+|||+++
T Consensus 234 a~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------------- 293 (335)
T 2h8o_A 234 AIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALR-------------------- 293 (335)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHH--------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 205 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 205 ~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.+|. .++.|.+|++++++|++
T Consensus 294 -------------~le~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 294 -------------GEAWAREKLQEQVAEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 4678999999999999999999984 34789999999999974
No 32
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=8.2e-54 Score=385.50 Aligned_cols=211 Identities=30% Similarity=0.413 Sum_probs=190.0
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.++++|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 50 ~l~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail 112 (299)
T 1rqj_A 50 FLVYATGHMFGV-----------------STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAIL 112 (299)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHH
Confidence 367788888864 3467899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC----Ch----hHH----------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK----HT----EVI----------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~----~~----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||+|+++||+.+++.. .+ +++ +++|++|+++|||+||++||++
T Consensus 113 ~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ 192 (299)
T 1rqj_A 113 AGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRL 192 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999998751 11 111 5789999999999999999999
Q ss_pred HHHH-hCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCC
Q 024463 124 VAYL-SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDN 202 (267)
Q Consensus 124 ga~l-a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~ 202 (267)
|+++ +|.+++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+|||++++
T Consensus 193 ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~----------------- 255 (299)
T 1rqj_A 193 GALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLG----------------- 255 (299)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC-----------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHH-----------------
Confidence 9999 9988888999999999999999999999999999999999999999999999999995
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++..++++.++|++.|+.+|.+.. .++.|.+|++++++|++
T Consensus 256 ----------------l~~a~~~~~~~~~~A~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 256 ----------------LEQARKKARDLIDDARQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 457889999999999999999987331 56899999999999975
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.4e-53 Score=379.69 Aligned_cols=205 Identities=27% Similarity=0.338 Sum_probs=163.5
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 47 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIl 109 (297)
T 3m0g_A 47 FLAIESAAIHGI-----------------SMAQAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVL 109 (297)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHH
Confidence 367888888875 4578999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC--h----hHH------------------------------HHHHHHHHhchHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLKH--T----EVI------------------------------MECYMQKTYNKTAALVSNSCKA 123 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~--~----~~~------------------------------~~~y~~~~~~KTa~l~~~~~~~ 123 (267)
+||||+++||+.+++... + +++ +++|++|+.+|||+||++||++
T Consensus 110 aGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ 189 (297)
T 3m0g_A 110 AGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQA 189 (297)
T ss_dssp HHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHH
Confidence 999999999999887531 1 111 4789999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCCh
Q 024463 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNP 203 (267)
Q Consensus 124 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~ 203 (267)
|++++|.+++ .+++||.+||++|||+||++|++++++.+||++|+|+++||+|||++++
T Consensus 190 ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------------------ 248 (297)
T 3m0g_A 190 GAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLG------------------ 248 (297)
T ss_dssp HHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHC------------------
T ss_pred HHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHH------------------
Confidence 9999998876 7999999999999999999999999999999999999999999999994
Q ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 204 ANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 204 ~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
++++++.++++.++|++.|+.+|.+. +.|.+|++++++|++
T Consensus 249 ---------------l~~a~~~~~~~~~~A~~~L~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 249 ---------------LAGAKSRAADLVAEAEAALAPYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHTGGGGGGG--------HHHHHHHHHHTC---
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhcc
Confidence 56788999999999999999998754 789999999999964
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1e-52 Score=379.55 Aligned_cols=206 Identities=27% Similarity=0.355 Sum_probs=173.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.+.++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 56 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIl 118 (313)
T 3lom_A 56 ILVYLAGDLIDV-----------------DQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAIL 118 (313)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHH
Confidence 367788888874 4578999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCC-C--h-h----HH-----------------------------HHHHHHHHhchHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLK-H--T-E----VI-----------------------------MECYMQKTYNKTAALVSNSCK 122 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~-~--~-~----~~-----------------------------~~~y~~~~~~KTa~l~~~~~~ 122 (267)
+||+|+++||+.+++.. + + + .+ +++|++|+++|||+||+++|+
T Consensus 119 aGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~ 198 (313)
T 3lom_A 119 VGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFE 198 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999887651 1 1 1 11 578999999999999999999
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCC
Q 024463 123 AVAYLSG--QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSS 200 (267)
Q Consensus 123 ~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~ 200 (267)
+ ++++| ++++..+.+++||.+||++|||+||++|++++++.+||+.|+|+++||+|||+++
T Consensus 199 ~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------- 261 (313)
T 3lom_A 199 M-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------- 261 (313)
T ss_dssp H-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHS----------------
T ss_pred H-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHH----------------
Confidence 9 99999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 201 DNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 201 ~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
+++++++.++++.++|++.|+.||.+. +.|.+|++++++|+
T Consensus 262 -----------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la~~~~~R~ 302 (313)
T 3lom_A 262 -----------------NKQQLEEEIAVHYQIAMDSLRLFGSKA--------AALIELTKQLQNRS 302 (313)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHTTTTTGGGG--------HHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHHHHHHHHhcc
Confidence 568899999999999999999998643 78999999999996
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.1e-52 Score=378.24 Aligned_cols=209 Identities=25% Similarity=0.317 Sum_probs=176.0
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHH--HHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQ--QCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLA 77 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~A 77 (267)
.+++++++++|.. .+.+ .++|+++|+||++||||||| ||+|++|||+||+|++||+++|
T Consensus 54 ~L~l~~~~~~g~~-----------------~~~~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~A 116 (309)
T 3pde_A 54 LLTVATMQSLGVT-----------------FVPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMA 116 (309)
T ss_dssp HHHHHHHHHTTCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHH
T ss_pred HHHHHHHHHhCCC-----------------HHHHhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHH
Confidence 3678888888751 1345 89999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCh-----hHH----------------------------HHHHHHHHhchHHHHHHHHHHHH
Q 024463 78 ILAGDLLISRALVALASLKHT-----EVI----------------------------MECYMQKTYNKTAALVSNSCKAV 124 (267)
Q Consensus 78 i~~Gd~Ll~~a~~~l~~~~~~-----~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~g 124 (267)
||+||+|++.||+.+++...+ +++ +++|++|+++|||+||++||++|
T Consensus 117 IlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~g 196 (309)
T 3pde_A 117 TLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAG 196 (309)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999876432 111 57899999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChh
Q 024463 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPA 204 (267)
Q Consensus 125 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~ 204 (267)
++++|++++..+.+++||.++|++|||+||++|++++++.+||++|+|+++||+|||+++
T Consensus 197 a~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~-------------------- 256 (309)
T 3pde_A 197 LILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKL-------------------- 256 (309)
T ss_dssp HHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHH--------------------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH--------------------
Confidence 999999998889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 205 NVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 205 ~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
+++.+...++++.++|.+.|+.+|.+-. .+. |.++++++++|+
T Consensus 257 -------------al~~a~~~~~~~~~~a~~~l~~~~~~~~-----~~~-L~~l~~~~~~r~ 299 (309)
T 3pde_A 257 -------------GLIGANQALIDTIHSGQAALQGLPTSTQ-----RDD-LAAFFSYFDTER 299 (309)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHTSCCCHH-----HHH-HHGGGGGSCTTT
T ss_pred -------------HHHHhHHHHHHHHHHHHHHHHHhhhccC-----HHH-HHHHHHHHHHhh
Confidence 4567888899999999999999876531 233 999999999986
No 36
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4e-52 Score=371.30 Aligned_cols=202 Identities=28% Similarity=0.334 Sum_probs=174.7
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. .++.++.+|+++|+||++||||||| ||+|++|||+||+|.+||+++|||
T Consensus 52 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl 114 (284)
T 2ftz_A 52 LLVLTLGEDLGV-----------------EEEXLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALL 114 (284)
T ss_dssp HHHHHHHHHHTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHhCc-----------------CHHHHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHH
Confidence 367888888874 2466899999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChhHH----------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCC
Q 024463 80 AGDLLISRALVALASLKHTEVI----------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQR 131 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~~~~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~ 131 (267)
+||||+++||+.+++.++.+++ +++|++|+++|||+||++||++|++++|.+
T Consensus 115 ~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~ 194 (284)
T 2ftz_A 115 AGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXD 194 (284)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC
Confidence 9999999999999987553322 467999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHH
Q 024463 132 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILE 211 (267)
Q Consensus 132 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~ 211 (267)
++ .+.+||.++|++|||+||++|++++++.+||+.|+|++ |+|||++++
T Consensus 195 ~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~-------------------------- 243 (284)
T 2ftz_A 195 HT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVG-------------------------- 243 (284)
T ss_dssp CH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHC--------------------------
T ss_pred hh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHH--------------------------
Confidence 77 89999999999999999999999999999999999999 999999994
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHH-HHHHHHHHHhc
Q 024463 212 YLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTA-LVHITQKIITR 265 (267)
Q Consensus 212 ~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~-L~~l~~~~~~R 265 (267)
++++++.+++|.++|++.|+.+|. + .++. |.+|++++++|
T Consensus 244 -------l~~a~~~a~~~~~~A~~~L~~l~~-~------~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 244 -------IQXAREMADXYYEEVLXGIESEGL-F------RTLFLLXELXQMVEER 284 (284)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHTTC-H------HHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCc-h------hHHHHHHHHHHHHHcC
Confidence 567899999999999999999987 5 7788 99999999987
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=4.5e-52 Score=372.77 Aligned_cols=210 Identities=31% Similarity=0.447 Sum_probs=182.5
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.+.++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 48 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaG 110 (295)
T 3ipi_A 48 IILLLVSEICSG-----------------SYSRSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCG 110 (295)
T ss_dssp HHHHHHHHHHHS-----------------CCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHH
Confidence 367888888875 235688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH--------------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHH
Q 024463 82 DLLISRALVALASLKHTEVI--------------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVA 135 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~--------------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~ 135 (267)
|||+++||+.+++... +++ +++|++|+++|||+||++||++|++++|++++..
T Consensus 111 D~Ll~~a~~ll~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~ 189 (295)
T 3ipi_A 111 DYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELA 189 (295)
T ss_dssp HHHHHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHchH-HHHHHHHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999998887642 221 4789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHh
Q 024463 136 TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 215 (267)
Q Consensus 136 ~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~ 215 (267)
+.+++||+++|++|||+||++|++++++ || |+.+||+|||++|+++..+
T Consensus 190 ~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~~------------------------- 238 (295)
T 3ipi_A 190 ERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTSK------------------------- 238 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcCc-------------------------
Confidence 9999999999999999999999998763 54 6789999999999986432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhcc
Q 024463 216 SHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 216 ~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
.++++++++.+++|.++|++.|+.||+++ .++.|.+|+++++.|.
T Consensus 239 ~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 239 EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLFQITDYITVDM 283 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhC
Confidence 24699999999999999999999999888 8999999999999873
No 38
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.6e-51 Score=380.23 Aligned_cols=238 Identities=17% Similarity=0.154 Sum_probs=191.3
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGD 82 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~Gd 82 (267)
++++.++++|... ....+.++.+||+||+||+||||||||||+|++|||+||+|++||+++|||+||
T Consensus 78 l~~~~~~~~~~~~-------------~~~~e~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~~AIl~Gd 144 (368)
T 2q58_A 78 ILVLISSLSSAYS-------------NIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIF 144 (368)
T ss_dssp -CHHHHTTTTCCC-------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc-------------cCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcchhhHHHHHH
Confidence 5667777776422 124578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCh-------hHH-----------------------------HHHHHHHHhchHHHH-HHHHHHHHH
Q 024463 83 LLISRALVALASLKHT-------EVI-----------------------------MECYMQKTYNKTAAL-VSNSCKAVA 125 (267)
Q Consensus 83 ~Ll~~a~~~l~~~~~~-------~~~-----------------------------~~~y~~~~~~KTa~l-~~~~~~~ga 125 (267)
+|++.|++.+.++.+. +++ +++|++|+.+|||+| |.+|+.+|+
T Consensus 145 ~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~ 224 (368)
T 2q58_A 145 FLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGL 224 (368)
T ss_dssp HHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999999988665321 111 578999999999999 799999999
Q ss_pred HHhC--CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhC-hHHHHHhccCCCC
Q 024463 126 YLSG--QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEF-PQLRAFINSSSDN 202 (267)
Q Consensus 126 ~la~--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~-~~~~~~l~~~~~~ 202 (267)
+++| ++++..+.+..||.+||+||||+||++|+++ ||+.|+||++||+|||+++|++.. ++.++.+.+.+..
T Consensus 225 ~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~ 299 (368)
T 2q58_A 225 TLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGK 299 (368)
T ss_dssp HHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTT
T ss_pred HHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 9998 4566678899999999999999999999975 899999999999999999999974 5667766654432
Q ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHH----HHHHHhcc
Q 024463 203 PANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHI----TQKIITRN 266 (267)
Q Consensus 203 ~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l----~~~~~~R~ 266 (267)
. ...+.+++...+..+.+.+.++++.+++.+.++.+|... .++.|..+ .++++.|+
T Consensus 300 ~--~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 300 N--SSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp C--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHHHCC--
T ss_pred C--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHHHHHHHHHHhh
Confidence 2 233445555556666777888889999999999999876 56655554 45555554
No 39
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.8e-50 Score=364.71 Aligned_cols=214 Identities=25% Similarity=0.300 Sum_probs=173.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|... ...+..+.+.++|++||+||++||||||| ||+|++|||+||+|++||+.+|||
T Consensus 54 ~Lvl~~~~~~g~~~-----------~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIl 122 (311)
T 3llw_A 54 KLFLAVLCALVGQK-----------DYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVL 122 (311)
T ss_dssp HHHHHHHHHHSCHH-----------HHHHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCc-----------ccccchHHHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHH
Confidence 36788888887510 11234478999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCChh---HH----------------------------HHHHHHHHhchHHHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALAS--LKHTE---VI----------------------------MECYMQKTYNKTAALVSNSCKAVAY 126 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~--~~~~~---~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~ 126 (267)
+||+|++.||+.+++ +++.. ++ +++|++|+.+|||+||++||++|++
T Consensus 123 aGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~ 202 (311)
T 3llw_A 123 IGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLV 202 (311)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999987 32211 11 5789999999999999999999999
Q ss_pred HhCCCHHHH-HHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhh
Q 024463 127 LSGQREEVA-TLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPAN 205 (267)
Q Consensus 127 la~~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~ 205 (267)
++|++++.. +.+++||++||++|||+||++|++++++.+||+.++ ++||+|||+++
T Consensus 203 laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~--------------------- 259 (311)
T 3llw_A 203 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLL--------------------- 259 (311)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSCHHHHH---------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHH---------------------
Confidence 999998888 899999999999999999999999999999999876 99999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHH-HHHHHHHHHHHHhcc
Q 024463 206 VDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNA-RTALVHITQKIITRN 266 (267)
Q Consensus 206 ~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~-~~~L~~l~~~~~~R~ 266 (267)
+++.++..++++.++|.+.|..++.-.. . .+.|.++++++++|.
T Consensus 260 ------------~l~~a~~~~~~~~~~a~~~l~~~~~~~~-----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 260 ------------GLERANNYAQTLKTEVLNDLDALKPAYP-----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTTSTTTCH-----HHHHHHHHHHHHHHC--
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhhccccCc-----cHHHHHHHHHHHHHhcc
Confidence 4567888999999999999999663110 2 578999999999996
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.2e-49 Score=356.31 Aligned_cols=205 Identities=26% Similarity=0.347 Sum_probs=165.9
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAIL 79 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~ 79 (267)
.+++++++++|. ...+.+.++|+++|+||++||||||| ||+|++|||+||+|++||+++|||
T Consensus 45 ~L~l~~~~~~~~----------------~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIl 108 (291)
T 3npk_A 45 QLLLSVVQSNKP----------------ELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAIL 108 (291)
T ss_dssp HHHHHHHHHHCG----------------GGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCC----------------CcHHHHHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHH
Confidence 356777788764 13578999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC-hh----HH----------------------------HHHHHHHHhchHHHHHHHHHHHHHH
Q 024463 80 AGDLLISRALVALASLKH-TE----VI----------------------------MECYMQKTYNKTAALVSNSCKAVAY 126 (267)
Q Consensus 80 ~Gd~Ll~~a~~~l~~~~~-~~----~~----------------------------~~~y~~~~~~KTa~l~~~~~~~ga~ 126 (267)
+||+|++.||+.+++... ++ ++ +++|++|+++|||+||++||++|++
T Consensus 109 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~ 188 (291)
T 3npk_A 109 VGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCE 188 (291)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999987532 11 00 5789999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhH
Q 024463 127 LSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANV 206 (267)
Q Consensus 127 la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~ 206 (267)
++|++++..+.+++||++||++|||+||++|++++++.+||+.+.| +||+|||++++
T Consensus 189 laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~--------------------- 245 (291)
T 3npk_A 189 ICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLG--------------------- 245 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHC---------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHH---------------------
Confidence 9999999889999999999999999999999999999999998776 99999999994
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHh
Q 024463 207 DVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIIT 264 (267)
Q Consensus 207 ~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~ 264 (267)
++.+....+++.++|.+.|..++.+ ..+.|++++++.++
T Consensus 246 ------------l~~a~~~~~~~~~~a~~~l~~~~~~-------~~~~l~~la~~~~~ 284 (291)
T 3npk_A 246 ------------LEQAIKTKENLLNECEQDLEKLNEK-------LAQMIQNLIIQYLE 284 (291)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTSCHH-------HHHHHHHHHHHHC-
T ss_pred ------------HHHhHHHHHHHHHHHHHHHHHhchh-------HHHHHHHHHHHHHh
Confidence 5667788999999999999999743 25789999988654
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.7e-49 Score=353.95 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=177.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.+.++|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 55 ~L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaG 117 (289)
T 2azj_A 55 TLNMFFTVALGG-----------------DIKDSYGGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFIT 117 (289)
T ss_dssp HHHHHHHHHTTC-----------------CGGGGHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHH
Confidence 468888888874 124578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCChhHH--------------------HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 024463 82 DLLISRALVAL-ASLKHTEVI--------------------MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFE 140 (267)
Q Consensus 82 d~Ll~~a~~~l-~~~~~~~~~--------------------~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~ 140 (267)
|||+++||+.+ ++.++ +++ +++|++++++|||+||++||++|++++ ++++..+.+++
T Consensus 118 D~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~ 195 (289)
T 2azj_A 118 NYLIPTALRIIQTSYGD-DALNTSIELWKDTSVGALRDMYDNSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLD 195 (289)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 99999999999 77642 322 357999999999999999999999999 88888899999
Q ss_pred HHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHH
Q 024463 141 YGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQ 220 (267)
Q Consensus 141 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~ 220 (267)
||.++|++|||+||++|++++ || .|+++||+|||+++ . ... .+
T Consensus 196 ~g~~lG~aFQi~DDilD~~~~----~K---~dl~~gk~Tlp~l~-~-~~g----------------------------~~ 238 (289)
T 2azj_A 196 VGKYLGIIYQVIDDFVDYKTK----KV---EEIDGSAKQLFKYY-R-EGK----------------------------LE 238 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS----CT---TTCCTTGGGGHHHH-T-TTC----------------------------HH
T ss_pred HHHHHHHHHHHHHhhhhhcCC----CC---hhhhcCcccHHHHH-H-cCC----------------------------HH
Confidence 999999999999999999986 46 48999999999999 2 211 11
Q ss_pred HH-HHHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHHHHHHHHHhcc
Q 024463 221 RT-TELALKHASLAAAAIDSLPE-THDVDATNARTALVHITQKIITRN 266 (267)
Q Consensus 221 ~a-~~~~~~~~~~a~~~L~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~ 266 (267)
.+ +..+++|.++|++.|+.+|. ++ .++.|.++++++++|.
T Consensus 239 ~a~~~~a~~~~~~A~~~L~~lp~~~~------~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 239 EYVRSVYLEYKQKYDELISNIPFQSK------YLSEIRSLPEFLANGL 280 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCGG------GHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhcc
Confidence 11 45899999999999999998 55 7899999999999984
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=4.3e-47 Score=340.75 Aligned_cols=194 Identities=30% Similarity=0.415 Sum_probs=171.9
Q ss_pred HHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCcchhccchhHHHHH
Q 024463 3 VILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDV--LDDADTRRGIGSLSSVMGNKLAILA 80 (267)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI--~D~s~~RRg~pt~~~~~G~~~Ai~~ 80 (267)
++++.++++|. .++.++++|+++|+||++||||||| ||+|++|||+||+|.+||+++||++
T Consensus 59 L~l~~~~~~g~-----------------~~~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIla 121 (293)
T 2j1p_A 59 LCIAACELVGG-----------------EESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLA 121 (293)
T ss_dssp HHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHH
T ss_pred HHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHH
Confidence 56777777763 3467899999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC----h-h----------------HH------------------HHHHHHHHhchHHHHHHHHH
Q 024463 81 GDLLISRALVALASLKH----T-E----------------VI------------------MECYMQKTYNKTAALVSNSC 121 (267)
Q Consensus 81 Gd~Ll~~a~~~l~~~~~----~-~----------------~~------------------~~~y~~~~~~KTa~l~~~~~ 121 (267)
||+|+++||+.+++... + . .+ +++|+.|+++|||+||++||
T Consensus 122 GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~ 201 (293)
T 2j1p_A 122 GDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASA 201 (293)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999998876421 1 0 00 46799999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCC
Q 024463 122 KAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSD 201 (267)
Q Consensus 122 ~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~ 201 (267)
++|++++|++++..+.+++||.++|++|||+||++|+++++ |.|+|+++
T Consensus 202 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K~T~p~l~----------------- 250 (293)
T 2j1p_A 202 VLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------KLTYPKLM----------------- 250 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHH-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------cccHHHHH-----------------
Confidence 99999999999999999999999999999999999999764 89999999
Q ss_pred ChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHHHhccC
Q 024463 202 NPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETHDVDATNARTALVHITQKIITRNK 267 (267)
Q Consensus 202 ~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 267 (267)
+++++++.++++.++|++.|+.+| ++ .++.|.++++++++|++
T Consensus 251 ----------------gle~a~~~a~~~~~~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 251 ----------------GLEKSREFAEKLNTEARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 578999999999999999999998 33 46899999999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=4.8e-42 Score=305.26 Aligned_cols=158 Identities=28% Similarity=0.372 Sum_probs=130.3
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|.. ....+.+..+|+++|+||++|||||||||+|++|||+||+|.+||+++|||+|
T Consensus 51 ~Lvll~~~~~g~~--------------~~~~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaG 116 (285)
T 4fp4_A 51 LLLLTFTYSIDRR--------------SIMDPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVAS 116 (285)
T ss_dssp HHHHHHHHHHCGG--------------GGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhCCC--------------CCChHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHH
Confidence 4678888888741 11457889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHH-----------HHHHHH-------HHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 024463 82 DLLISRALVALASLKHTEVI-----------MECYMQ-------KTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGK 143 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~~~~-----------~~~y~~-------~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~ 143 (267)
|||+++|++.+++.++ +++ .-++++ |+++|||+||++||++|++++|++ +..+.+++||+
T Consensus 117 D~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~~~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~ 194 (285)
T 4fp4_A 117 DWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERDKAAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGT 194 (285)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhccccchhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Confidence 9999999999998754 333 112222 899999999999999999999999 88889999999
Q ss_pred HHHHHhcchhhhhccccCccccCCCcccccccC
Q 024463 144 NLGLAYQLIDDILDFTGTSASLGKASLTDLRNG 176 (267)
Q Consensus 144 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~g 176 (267)
++|++|||+||++|++++++ .||+.|+||+++
T Consensus 195 ~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 195 KLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 99999999999999999876 578899999998
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=1.7e-38 Score=282.18 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=122.8
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCCcCcchhccchhHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVL-DDADTRRGIGSLSSVMGNKLAILA 80 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~-D~s~~RRg~pt~~~~~G~~~Ai~~ 80 (267)
.+++++++++|. .++.+.++|+++|+||++|||||||+ |+++.|||+||+|.+||+++|||+
T Consensus 46 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIla 108 (274)
T 3kra_B 46 TLCLAACELVGG-----------------DRSQAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLT 108 (274)
T ss_dssp HHHHHHHHHTTC-----------------CGGGGHHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHH
Confidence 467888888875 34568999999999999999999998 666689999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCh-------hHH-------------------------------HHHHHHHHhchHHHHHHHHHH
Q 024463 81 GDLLISRALVALASLKHT-------EVI-------------------------------MECYMQKTYNKTAALVSNSCK 122 (267)
Q Consensus 81 Gd~Ll~~a~~~l~~~~~~-------~~~-------------------------------~~~y~~~~~~KTa~l~~~~~~ 122 (267)
||+|+++||+.+++..++ ..+ +++|++|+++|||+||++||+
T Consensus 109 GD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~ 188 (274)
T 3kra_B 109 GDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAA 188 (274)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876542 110 478999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhh
Q 024463 123 AVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 155 (267)
Q Consensus 123 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ 155 (267)
+|++++|++++.++.+++||++||++|||+||.
T Consensus 189 lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 189 CGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=8.5e-38 Score=277.63 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=121.1
Q ss_pred hHHHHHHHhhccCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCcchhccchhHHHHHH
Q 024463 2 QVILLMATALNVCTPELSPNVLGNTLILDLRRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAG 81 (267)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~AaavEllH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ai~~G 81 (267)
.+++++++++|. .++.++++|+++|+||++|||||||+|+|+ |||+||+|++||+++|||+|
T Consensus 51 ~L~l~~~~~~g~-----------------~~~~~~~~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaG 112 (273)
T 3qkc_B 51 ALCVAACELVGG-----------------DRSDAMAAAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTG 112 (273)
T ss_dssp HHHHHHHHHTTC-----------------CGGGTHHHHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHH
Confidence 367888888875 345689999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCh------hH----------------H-------------HHHHHHH-HhchHHHHHHHHHHHHH
Q 024463 82 DLLISRALVALASLKHT------EV----------------I-------------MECYMQK-TYNKTAALVSNSCKAVA 125 (267)
Q Consensus 82 d~Ll~~a~~~l~~~~~~------~~----------------~-------------~~~y~~~-~~~KTa~l~~~~~~~ga 125 (267)
|+|+++||+.+++..++ .. + .++|+++ +++|||+||++||++|+
T Consensus 113 D~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGa 192 (273)
T 3qkc_B 113 DGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGA 192 (273)
T ss_dssp HHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999875431 11 1 2467765 59999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcchhhhh
Q 024463 126 YLSGQREEVATLAFEYGKNLGLAYQLIDDIL 156 (267)
Q Consensus 126 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~l 156 (267)
+++|++++..+.+++||.++|++|||+||+.
T Consensus 193 ilaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 193 ILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.74 E-value=1 Score=39.37 Aligned_cols=84 Identities=15% Similarity=0.018 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcc
Q 024463 138 AFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSH 217 (267)
Q Consensus 138 l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g 217 (267)
...++.++|+|||+.|=+.|+ +.|+..|++-+|.-..-+..-....+.. ...++ .+..
T Consensus 154 ~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP~~~l~~~gv~~~dl~~-~~~~~-~~~~--------- 211 (294)
T 4hd1_A 154 RARLSDATCTALQVANHMQDI-----------DRDLALGRIYVPRADLEQFGATLDDIRA-RRATD-GVRR--------- 211 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCBCSCHHHHHTTTCCHHHHHT-TCCCH-HHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------hhhhccCceeCCHHHHHHcCCCHHHHhc-CCCCH-HHHH---------
Confidence 346789999999999988887 4678889998887654332211122222 22221 2222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCC
Q 024463 218 GIQRTTELALKHASLAAAAIDSLPET 243 (267)
Q Consensus 218 ~i~~a~~~~~~~~~~a~~~L~~lp~~ 243 (267)
.+..-...++.++++|...+..+|..
T Consensus 212 ~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 212 CIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 12333455677777777777777643
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=90.39 E-value=0.78 Score=41.17 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp 181 (267)
++++..-+++-.|....+.+.+...-...++. .......+.++|.|||+.|=+.|+ +.|+..|++-||
T Consensus 138 ~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YlP 205 (343)
T 3vj8_A 138 EQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNIIRDY-----------LEDQQGGREFWP 205 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHHHHTH-----------HHHHHTTCCCSC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHh-----------HHHHhCCCeeCC
Confidence 45555555665566666666554443222232 334567899999999999988887 477888999888
Q ss_pred HHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 024463 182 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPET 243 (267)
Q Consensus 182 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~ 243 (267)
.=..-+..-....++ .+..-..+.. .+..-...++.|+.+|...+..+|..
T Consensus 206 ~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 206 QEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp HHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred HHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 754322111111111 1111122222 23455566778888888888888764
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=89.50 E-value=1.9 Score=37.47 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=67.3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHH
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAP 181 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp 181 (267)
++++..-+++=.|+...+++.+- +..+.+ .....+.++|.|+|+.|=+.|+ +.|...|++-||
T Consensus 129 ~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~~---~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~YLP 191 (293)
T 3acx_A 129 DAELFGYCYGVAGTVGEVLTPIL---SDHETH---QTYDVARRLGESLQLINILRDV-----------GEDFENERIYFS 191 (293)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH---CSSCCH---HHHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh---CCCCcH---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEEeC
Confidence 44454445554455444444432 222312 3567899999999999977777 467888999999
Q ss_pred HHHHhhhChHHHHHhccCCCChhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024463 182 ILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSLPETH 244 (267)
Q Consensus 182 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~i~~a~~~~~~~~~~a~~~L~~lp~~~ 244 (267)
.=..-+..-....+.... .++ .+.. .+..-...++.++.+|...+..+|...
T Consensus 192 ~d~l~~~gv~~e~l~~~~-~~~-~~~~---------~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 192 KQRLKQYEVDIAEVYQNG-VNN-HYID---------LWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp HHHHHHHTCCHHHHHHHC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred HHHHHHcCCCHHHhcccC-CCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 854433221111222211 121 1222 234455667888888888888888753
No 49
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=71.47 E-value=7.5 Score=34.36 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
+....+...-+.+=.++-|.|||.| .++.|.|++|+=..+|...|--...-+..+|.+.|..++.
T Consensus 202 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 202 EQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3444566666788899999999987 4577889999999999999988888888999988887753
No 50
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=69.59 E-value=7.4 Score=34.05 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCC
Q 024463 32 RRRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96 (267)
Q Consensus 32 ~~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~ 96 (267)
++....+...-+.+=.++-|.|||.| .++.+.|++|+=..+|...|--...-+..+|.+.|..++
T Consensus 197 ~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 197 DTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555666788889999999987 577888999998888888888888888888888888775
No 51
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=68.57 E-value=8.9 Score=33.98 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
+....+...-+.+=.++-|.|||.| .++.|.|++|+=..+|...|--...-+...|.+.|..++.
T Consensus 231 ~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 307 (324)
T 3uca_A 231 GDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG 307 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344555556778899999999976 3567888899999999999888888888899888888764
No 52
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=68.33 E-value=7 Score=34.30 Aligned_cols=65 Identities=25% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
+....+...-+.+=.++-|.|||.| .++.|.|++|+=..+|...|--...-+...|...|..++.
T Consensus 203 ~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 279 (304)
T 3lsn_A 203 GELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA 279 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3444566666788899999999987 5789999999999999999988888888889888887764
No 53
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=68.25 E-value=33 Score=30.27 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHh
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 186 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al 186 (267)
|.+.+....+...-+.|=.++=|-||+.|= +|+|.|++|+-..|.-
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G~ 108 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFNN 108 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcCh
Confidence 444444445666778888899999999763 6778899998877753
No 54
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=66.95 E-value=57 Score=27.50 Aligned_cols=61 Identities=7% Similarity=0.055 Sum_probs=41.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCc
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTS 162 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~ 162 (267)
+++|+++-..-+|..+......-+.--..+++..+.+.++-+..+...-+.||+..|-.+.
T Consensus 154 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 154 LGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7899997655555443332222222123567766678888899999999999999996543
No 55
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=66.37 E-value=64 Score=27.88 Aligned_cols=46 Identities=30% Similarity=0.319 Sum_probs=33.2
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 128 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+.+.+....+...-+.+=.++=|.||+.|= +|+|.|++|+-..|.
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 85 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIYG 85 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhccC
Confidence 3455554555667777788888999999762 567888888776654
No 56
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=65.74 E-value=28 Score=30.81 Aligned_cols=48 Identities=27% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHH
Q 024463 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 125 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
+.+.|.+.+....+...-+.|=.++-|-||+.|= +|+|.|++|+-..|
T Consensus 65 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 65 ARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 3333444444445667777888899999999663 56788888876655
No 57
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=64.82 E-value=7.4 Score=34.09 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 35 QQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
...+...-+.+=.++-|.||+.| .++.+.|++|+=..+|...|-....-+..+|.+.|..++.
T Consensus 211 ~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 211 LPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33455556778889999999977 3567888899988899988888888888889888888764
No 58
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=63.97 E-value=8.4 Score=34.12 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
+....+...-+.+=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++.
T Consensus 209 ~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 209 EQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444566666788899999999977 3567889999999999988888888888888887777754
No 59
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=63.77 E-value=49 Score=28.60 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 132 EEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 132 ~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+....+...-+.+=.+.-|-||+.|= +|+|.|++|+-..|.
T Consensus 67 ~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~G 108 (285)
T 4fp4_A 67 DPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMYG 108 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhcC
Confidence 333445666777888899999999652 667888888877663
No 60
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=61.17 E-value=10 Score=33.69 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCC
Q 024463 32 RRRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLK 96 (267)
Q Consensus 32 ~~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~ 96 (267)
.+....+...-+.+=.++-|.|||.| .++.+.|++|+=..+|...+-....-+..+|.+.|..++
T Consensus 241 ~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 241 QAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34445566666788899999999977 356778888888888887777777777777777776664
No 61
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=60.67 E-value=11 Score=32.91 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC------------CCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLDD------------ADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~ 95 (267)
+....+...-+.+=.++-|.|||.|- ++.+.|++|+=..+|...|--...-+...|.+.|..+
T Consensus 206 ~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 206 EVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555667788899999999873 5677888888888888888877777777777777665
No 62
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=58.67 E-value=14 Score=32.50 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
+....+...-+.+=.++-|.|||.| .++.|.|++|+=..+|...|--...-+...|.+.|..++.
T Consensus 210 ~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 286 (313)
T 3lom_A 210 QIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS 286 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3444556666788899999999976 3567889999999999999888888888888887776653
No 63
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=54.75 E-value=1e+02 Score=26.41 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhh--hccccCccccCCCcccccccCcccHHHHHH
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
+.+++..-.+...-+.|=.+.=|-||+ .|= +|+|.|++|+-..|.
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~G 108 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTYG 108 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhcC
Confidence 445554445666677777888899999 873 567888998877763
No 64
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=54.31 E-value=19 Score=31.54 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcC
Q 024463 35 QQCIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95 (267)
Q Consensus 35 ~~~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~ 95 (267)
...+...-+.+=.++-|.|||.| .++.+.|++|+=..+|...|--.-.-++..|...+..+
T Consensus 207 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 207 WPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33445555678889999999977 46788899998888888888777777777777777663
No 65
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=52.88 E-value=59 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.040 Sum_probs=34.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 124 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
++.+.|.+.+....+...-+.|=.++=|-||+.|= +|+|.|++|+-..|.
T Consensus 65 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 114 (352)
T 3nf2_A 65 SAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVHG 114 (352)
T ss_dssp HHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhcC
Confidence 34444555444445666677788889999999773 567888888766653
No 66
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=52.00 E-value=63 Score=28.22 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHH
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
|.+.+..-.+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 60 g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 60 DTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 433333445666667777888999999772 56788888876554
No 67
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=51.86 E-value=75 Score=27.46 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
...+...-+.+=.++=|.||+.|= +|+|.|++|+-..|.
T Consensus 63 ~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 101 (299)
T 1v4e_A 63 AISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMYG 101 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhcC
Confidence 344556666777788899999772 567888888776663
No 68
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=48.84 E-value=92 Score=27.32 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 130 QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 130 ~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+.+....+...-+.|=.++=|-||+.|= +|+|.|++|+-..|.
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTYG 116 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHcC
Confidence 46665556777778888899999999762 667889998876654
No 69
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=48.81 E-value=33 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC------CCCCCCCcCcchhccc
Q 024463 33 RRQQCIAEITEMIHVASLIHDDVLD------DADTRRGIGSLSSVMG 73 (267)
Q Consensus 33 ~~~~~~AaavEllH~asLIhDDI~D------~s~~RRg~pt~~~~~G 73 (267)
+....+...-+.+=.++-|.|||.| +.+.+.|++|+=..|+
T Consensus 187 ~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 187 ELAERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHH
Confidence 3344555556778889999999987 3455667776666555
No 70
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=46.78 E-value=1.5e+02 Score=25.98 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.7
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 128 SGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 128 a~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
.+.+.+....+...-+.|=.++=|.||+.|= +|+|.|++|+-..|.
T Consensus 55 ~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 100 (340)
T 2e8v_A 55 MNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIFG 100 (340)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhccC
Confidence 3445554445666667777888899999762 567888888765553
No 71
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=45.96 E-value=78 Score=27.80 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHHh
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFAM 186 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al 186 (267)
+.+.+....+...-+.|=.++-|.||+.|= +|+|.|++|+-..|.-
T Consensus 62 g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~G~ 107 (342)
T 1wy0_A 62 GGDPLRAIYPAVAIELIHNYSLVHDDIMDM------------DETRRGKPTVHRIWGV 107 (342)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCCSTTSCCHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCcccC------------CCCCCCCCccccccCh
Confidence 434333344566667777888999999772 5678888887766643
No 72
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=44.89 E-value=19 Score=31.40 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcCCC
Q 024463 37 CIAEITEMIHVASLIHDDVLD------------DADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASLKH 97 (267)
Q Consensus 37 ~~AaavEllH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~~~ 97 (267)
.+...-+.+=.++-|.|||.| .++.|.|++|+=..+|...|--...-++..|...|..++.
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 272 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGE 272 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445677889999999987 3567888999988999988888888888888888877653
No 73
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=44.41 E-value=1.4e+02 Score=26.40 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=34.3
Q ss_pred HHHHHHHHhchHHHHHHHH-HHHHHHHhCCCHHHHH--HHHHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVAT--LAFEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~-~~~ga~la~~~~~~~~--~l~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
+++|+++-..-+|..+... +.++. --..+++..+ .+.++-+..+...-+.||+..|..+
T Consensus 208 ~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 208 VEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887444444333222 22221 1123444332 4566778888899999999998644
No 74
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=41.95 E-value=1e+02 Score=27.36 Aligned_cols=39 Identities=28% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 135 ATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 135 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
...+...-+.|=.++-|-||+.|= +|+|.|++|+-..|.
T Consensus 67 ~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 105 (358)
T 4dhd_A 67 ALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAFG 105 (358)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhcC
Confidence 344566667788899999999662 667888998877663
No 75
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=40.56 E-value=1.4e+02 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 129 GQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 129 ~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
|.+++..-.+...-+.+=.++=|-||+.|= +|+|.|++|+-..|.
T Consensus 65 g~~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G 109 (289)
T 2azj_A 65 GGDIKDSYGGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVYG 109 (289)
T ss_dssp TCCGGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhcC
Confidence 444333344556667777788899999662 677889998877664
No 76
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=40.13 E-value=1e+02 Score=26.95 Aligned_cols=48 Identities=23% Similarity=0.034 Sum_probs=32.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHH
Q 024463 125 AYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 125 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
+...+.+.+..-.+...-+.|=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 51 ~~~~~~~~~~~~~~A~avEliH~asLihDDi~D~------------s~~RRG~pt~h~~~ 98 (330)
T 1wmw_A 51 ALAHGAPLEAGLEAATALELFQNWVLVHDDIEDG------------SEERRGRPALHRLH 98 (330)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHS
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC------------CCCCCCCCcccccc
Confidence 3334445554455667777788889999999762 56788888866554
No 77
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=40.00 E-value=20 Score=31.15 Aligned_cols=64 Identities=30% Similarity=0.363 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC------------CCCCCCcCcchhccchhHHHHHHHHHHHHHHHHHHcC
Q 024463 32 RRRQQCIAEITEMIHVASLIHDDVLDD------------ADTRRGIGSLSSVMGNKLAILAGDLLISRALVALASL 95 (267)
Q Consensus 32 ~~~~~~~AaavEllH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ai~~Gd~Ll~~a~~~l~~~ 95 (267)
++....+...-+.+=.++-|.||+.|- ++.|.|++|+=..+|...+-....-+..+|.+.|..+
T Consensus 202 ~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l 277 (299)
T 1rqj_A 202 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQL 277 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445566667888999999999773 3346677777777777666666666666666655544
No 78
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=37.81 E-value=81 Score=28.11 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHhC-CCHHHHHHHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcccHHHHHH
Q 024463 125 AYLSG-QREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPILFA 185 (267)
Q Consensus 125 a~la~-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~a 185 (267)
+.+.+ .+.+....+...-+.|=.+.=|-||+.|= +|+|.|++|+-..|.
T Consensus 86 ~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~G 135 (360)
T 3lmd_A 86 SEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARWD 135 (360)
T ss_dssp HTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhcC
Confidence 33444 34444445566677788899999999762 567788888766653
No 79
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=33.51 E-value=1.5e+02 Score=25.68 Aligned_cols=40 Identities=18% Similarity=-0.008 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhcchhhh--hccccCccccCCCcccccccCcccHHHHH
Q 024463 133 EVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 133 ~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
+....+...-+.|=.++=|-||+ .|= +|+|.|++|+-..|
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 115 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMDN------------AALRRNHPTLHAKY 115 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccCC------------CcccCCCCchhhhc
Confidence 33444555666777788899998 662 67788888876665
No 80
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=31.68 E-value=67 Score=28.43 Aligned_cols=52 Identities=21% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhc
Q 024463 104 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILD 157 (267)
Q Consensus 104 ~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld 157 (267)
.|+-...+|- +-..-+.+++.+.|.+.+....+...-+.|=.++=|-||+.|
T Consensus 58 ~y~~~~gGKr--lRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 58 EHLIAAGGKR--LRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHTTTCCC--HHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 4554445663 112222333344444444444566677788889999999976
No 81
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=27.19 E-value=2.9e+02 Score=23.56 Aligned_cols=41 Identities=22% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhh--hccccCccccCCCcccccccCcccHHHHH
Q 024463 132 EEVATLAFEYGKNLGLAYQLIDDI--LDFTGTSASLGKASLTDLRNGIITAPILF 184 (267)
Q Consensus 132 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~~gk~Tlp~l~ 184 (267)
.+....+...-+.|=.++-|-||+ .|= +|+|.|++|+-..|
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD~------------s~~RRG~pt~h~~~ 101 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMDN------------ADFRRGIPTLHKSY 101 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcccccC------------CCCCCCCCchhhhc
Confidence 344455666667788899999999 552 56788888876665
No 82
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=27.04 E-value=2.9e+02 Score=23.44 Aligned_cols=59 Identities=8% Similarity=-0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHhchHHHHHHHH-HHHHHHHhCCCHHHHH--HHHHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKTAALVSNS-CKAVAYLSGQREEVAT--LAFEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~-~~~ga~la~~~~~~~~--~l~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
+++|+++-..-.|..+..+ +.++. --..+++..+ .+.++-+..+...-+.||+..|..+
T Consensus 166 ~eEYl~~r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 166 AAQYLAMRRHTIGVQPTVDLAERAG-RFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcccccchhhHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5678765433333332222 22221 1123444332 4556777888888999999999644
No 83
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=26.86 E-value=4.1e+02 Score=25.07 Aligned_cols=57 Identities=7% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHhchHHHHHH-HHHHHHHHHhC-CCHHHHHHH---HHHHHHHHHHhcchhhhhcccc
Q 024463 102 MECYMQKTYNKTAALVS-NSCKAVAYLSG-QREEVATLA---FEYGKNLGLAYQLIDDILDFTG 160 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~-~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~afQi~DD~ld~~~ 160 (267)
+++|++...--+|..+. ..+.+|. +. .+.+..+.+ -++-+..+...-+.||+..+-.
T Consensus 395 ~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~ 456 (555)
T 3n0f_A 395 FDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASA 456 (555)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhh
Confidence 67787765444443221 2222221 22 456654433 3566778888889999999854
No 84
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=24.88 E-value=4.4e+02 Score=24.82 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=34.7
Q ss_pred HHHHHHHHhchHHHHHH-HHHHHHHHHh-CCCHHHHHHH---HHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKTAALVS-NSCKAVAYLS-GQREEVATLA---FEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~-~~~~~ga~la-~~~~~~~~~l---~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
+++|++.-.--+|..+. ..+.+|. + ..+.+..+.+ .++-+..+...-+.||+..+-.+
T Consensus 397 ~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 397 FEEFKANALPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhccceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhh
Confidence 67888875554444322 2222221 1 1456655543 36778889999999999998644
No 85
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=24.17 E-value=1.1e+02 Score=23.63 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHH---HHHHHHHHhchHHH
Q 024463 77 AILAGDLLISRALVALASLKHTEVI---MECYMQKTYNKTAA 115 (267)
Q Consensus 77 Ai~~Gd~Ll~~a~~~l~~~~~~~~~---~~~y~~~~~~KTa~ 115 (267)
-|++|||+=+.-+.+|+.......+ -+...++.+.|+..
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl 113 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIR 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999977665542 45566667777654
No 86
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=23.63 E-value=2.7e+02 Score=23.45 Aligned_cols=51 Identities=22% Similarity=0.072 Sum_probs=29.1
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhh
Q 024463 104 CYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDIL 156 (267)
Q Consensus 104 ~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~l 156 (267)
.|.-...+|.=. ..-+.+++.+.|.+.+....+...-+.|=.+.-|-||+.
T Consensus 33 ~y~~~~gGKrlR--P~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~ 83 (274)
T 3kra_B 33 HHLTFAAPATAA--STLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHHHSCCCHH--HHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCcHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 354445566422 111222333344455544456666778888999999998
No 87
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=22.71 E-value=3.4e+02 Score=22.76 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchhhhhccccC
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGT 161 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 161 (267)
+++|+++-..-+|..+......-+.--..+++..+...++-+..+...-+.||+..|-.+
T Consensus 168 ~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 168 LGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 789998866666654333222222212356776667788889999999999999999644
No 88
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=21.17 E-value=2.6e+02 Score=25.38 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=41.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHh-CCCHHHHH--HHHHHHHHHHHHhcchhhhhccccCccccCCCcccccccCcc
Q 024463 102 MECYMQKTYNKTAALVSNSCKAVAYLS-GQREEVAT--LAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 178 (267)
Q Consensus 102 ~~~y~~~~~~KTa~l~~~~~~~ga~la-~~~~~~~~--~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~~gk~ 178 (267)
+++|+++ +..||....+.+ +....+ ..+++..+ .+.++-+..+...-+.||+..|-.+.+. .|..
T Consensus 286 leEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~----------gg~~ 353 (433)
T 3v1v_A 286 VWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNS----------PGRH 353 (433)
T ss_dssp HHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTS----------SSCC
T ss_pred HHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhc----------CCCC
Confidence 6788886 445543321111 111122 23444333 4566778888888999999999643321 1333
Q ss_pred -cHHHHHHhh
Q 024463 179 -TAPILFAME 187 (267)
Q Consensus 179 -Tlp~l~al~ 187 (267)
+.+.+|..+
T Consensus 354 ~N~V~~~mke 363 (433)
T 3v1v_A 354 LNLPVVIAER 363 (433)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 777777543
Done!