RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024463
(267 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 80.1 bits (196), Expect = 3e-18
Identities = 54/262 (20%), Positives = 88/262 (33%), Gaps = 41/262 (15%)
Query: 32 RRRQQCIAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNK---------------- 75
+ Q I E+TEM+H ASL+ DD+ D++ RRG S+ G
Sbjct: 38 EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEK 97
Query: 76 ------------LAILAGDLLISRALVALASLKHTEVIMECYMQKTYNKTAALVSNSCKA 123
+L + L +T E Y KT L +
Sbjct: 98 VLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGL 157
Query: 124 VAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGIITAPIL 183
+ S +E++ LGL +Q+ DD + S K+ DL G + P +
Sbjct: 158 MQLFSDYKEDL----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTI 213
Query: 184 FAME---EFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAIDSL 240
A+ E Q++ + ++N + YL + T + + A ID+
Sbjct: 214 HAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDAR 273
Query: 241 PETHDVDATNARTALVHITQKI 262
ALV K+
Sbjct: 274 GG------NPELVALVKHLSKM 289
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 68.9 bits (167), Expect = 3e-14
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 96 KHTEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDI 155
++ + E Y++ K+ AL + + A L G+ E + G +G YQ+ DDI
Sbjct: 142 RYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDL---YNLGVTIGTIYQMFDDI 198
Query: 156 LDFTGTSASLGKASLTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGK 215
+DF G DL+NG+ + P++ AME+FP+ R + + ++ ++ +
Sbjct: 199 MDFAGMEKIGKDGF-LDLKNGVASFPLVTAMEKFPEARQMFENR-----DWSGLMSFMRE 252
Query: 216 SHGIQRTTELALKHASLAAAAIDSLPE 242
++ E L +
Sbjct: 253 KGILKECEETLKVLVKNVIIENSWLRD 279
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 67.0 bits (162), Expect = 2e-13
Identities = 40/273 (14%), Positives = 81/273 (29%), Gaps = 50/273 (18%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRRGIGSLSSVMGNKLAILAGDLLISRA--------- 88
+ E+ L+ DD++D + TRRG G L + L+ +
Sbjct: 83 VGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYC 142
Query: 89 ------------------------LVALASLKHTEVIMECYMQKTYNKTAALVSNSCKAV 124
++ L + ++V + + ++ Y +
Sbjct: 143 RQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFY 202
Query: 125 AYLSGQ-------REEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGI 177
++ +E A +G +Q+ DD LD G A GK TD+++
Sbjct: 203 LPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNK 261
Query: 178 ITAPILFAMEEF-PQLRAFINS--SSDNPANVDVILEYLGKSHGIQRTTELALKHASLAA 234
+ ++ ++ P+ R + P V + E +
Sbjct: 262 CSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQ 321
Query: 235 AAIDSLPETHDVDATNARTALVHITQKIITRNK 267
I+ + + + QKI R K
Sbjct: 322 ELIEKHSN------RLPKEIFLGLAQKIYKRQK 348
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 53.1 bits (126), Expect = 8e-09
Identities = 63/269 (23%), Positives = 94/269 (34%), Gaps = 77/269 (28%)
Query: 38 IAEITEMIHVASLIHDDVLDDADTRR--GIGSLSSVMGNKLAILAGDLLISRALVALASL 95
A E IH SLIHDD+ D G+ + G AILAGD L + A L+
Sbjct: 69 PAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDA 128
Query: 96 KHTEV------------------------------------IMECYMQKTYNKTAALVSN 119
EV ++ + +KT AL+
Sbjct: 129 DMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRA 188
Query: 120 SCKAVAYLSGQREEVATLAF-EYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 178
+ + A +G + A +Y +++GLA+Q+ DDILD G +A+LGK D + G
Sbjct: 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248
Query: 179 TAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKHASLAAAAID 238
T P L +E+ + A A ++
Sbjct: 249 TYPALLGLEQ---------------------------------ARKKARDLIDDARQSLK 275
Query: 239 SLPETHDVDATNARTALVHITQKIITRNK 267
L E + +AL + II RNK
Sbjct: 276 QLAEQ-----SLDTSALEALADYIIQRNK 299
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 41.2 bits (95), Expect = 6e-05
Identities = 46/190 (24%), Positives = 69/190 (36%), Gaps = 36/190 (18%)
Query: 35 QQCIAEITEMIHVASLIHDDVLDDADTRRG--IGSLSSVMGNKLAILAGDLLISRALVAL 92
A EMIH SLIHDD+ + + V G AILAGD L+++A +
Sbjct: 63 GMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 122
Query: 93 ASLKHTEVI----------------------------------MECYMQKTYNKTAALVS 118
+S +E KT AL++
Sbjct: 123 SSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLT 182
Query: 119 NSCKAVAYLSGQREEVATLAFEYGKNLGLAYQLIDDILDFTGTSASLGKASLTDLRNGII 178
+ + A ++ + Y +LG+ +Q+ DD+LD G A LGK +DL N
Sbjct: 183 FAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKS 242
Query: 179 TAPILFAMEE 188
T L +
Sbjct: 243 TYVSLLGKDG 252
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 25.8 bits (56), Expect = 7.4
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 170 LTDLRNGIITAPILFAMEEFPQLRAFINSSSDNPANVDVILEYLGKSHGIQRTTELALKH 229
L + + T L + FP F S+ + D EYL K + + L
Sbjct: 205 LYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQY-LLTHETLYYDL 263
Query: 230 ASLAAAAIDS 239
+ +
Sbjct: 264 YRKSMEGMKK 273
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 25.7 bits (56), Expect = 7.4
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 90 VALASLKH-TEVIMECYMQKTYNKTAALVSNSCKAVAYLSGQREEVATLAFEYGKNLGLA 148
+++ +L+H T +I Y+ + A + N+ A LS + L Y L
Sbjct: 501 ISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILANT 560
Query: 149 Y 149
Y
Sbjct: 561 Y 561
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.361
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,872
Number of extensions: 38224
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 13
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)