BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024464
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 146 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSM 205
RG+ +H+ E+ R I++++ L+DLV G + K+ VL + I+YI+ LQ +
Sbjct: 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62
Query: 206 KLEAVNTR 213
K E ++ R
Sbjct: 63 KQENLSLR 70
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 144 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQR 200
A+ Q D+H+L ER RR I++R+K L L+P N K +L ++YI+ LQR
Sbjct: 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81
Query: 201 Q 201
+
Sbjct: 82 E 82
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 138 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINY 194
+Y + R A ++HS E+ RR+K++ + L LVP CN + + K VL + +
Sbjct: 2 EYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH 61
Query: 195 IQSLQ 199
+++L+
Sbjct: 62 MKTLR 66
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 153 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 201
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 16 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
Structure Of Human Clock-bmal1 Basic Helix-loop-helix
Domains With E-box Dna
Length = 73
Score = 31.6 bits (70), Expect = 0.42, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 143 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV---IGKALVLDEIINYIQSLQ 199
+ R A ++HS E+ RR+K++ + L LVP CN + + K VL + ++++L+
Sbjct: 3 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62
Query: 200 RQFL 203
+L
Sbjct: 63 GAWL 66
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 153 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 201
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 7 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 153 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 201
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 5 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 153 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQ 201
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+
Sbjct: 6 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 153 HSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQFLSMK 206
H+ ER RR+ I + L+D VP + +A +LD+ YIQ ++R+ +++
Sbjct: 8 HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQ 62
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 139 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA-----LVLDEIIN 193
IHV + +DS +LAERA +S +KI D+ P ++ GK + + EI +
Sbjct: 258 LIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICH 316
Query: 194 YIQS 197
+I +
Sbjct: 317 WISA 320
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 139 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA-----LVLDEIIN 193
IHV + +DS +LAERA +S +KI D+ P ++ GK + + EI +
Sbjct: 244 LIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDM-PHVFQMYGKFVNAADISIKEICH 302
Query: 194 YIQS 197
+I +
Sbjct: 303 WISA 306
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 218 IEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDW 254
++VF + QQ AG+P + A +EY G+S DW
Sbjct: 749 LDVFDAAERYQQ----AGLPLIVLAGKEYGAGSSRDW 781
>pdb|1Q5M|A Chain A, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
pdb|1Q5M|B Chain B, Binary Complex Of Rabbit 20alpha-Hydroxysteroid
Dehydrogenase With Nadph
Length = 322
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 195 IQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGM 236
+++LQ ++ + + T + PG+E+ P + + FDT +
Sbjct: 102 LKNLQLDYVDLYIIHFPTALKPGVEIIPTDEHGKAIFDTVDI 143
>pdb|1Q13|A Chain A, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
pdb|1Q13|B Chain B, Crystal Structure Of Rabbit 20alpha Hyroxysteroid
Dehydrogenase In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 195 IQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGM 236
+++LQ ++ + + T + PG+E+ P + + FDT +
Sbjct: 103 LKNLQLDYVDLYIIHFPTALKPGVEIIPTDEHGKAIFDTVDI 144
>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 61
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQR 200
R I++++ L+DLV G + K+ VL + I+YI+ LQ+
Sbjct: 1 RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQQ 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,089,899
Number of Sequences: 62578
Number of extensions: 316531
Number of successful extensions: 755
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 23
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)