Query 024464
Match_columns 267
No_of_seqs 210 out of 864
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.4E-13 7.3E-18 95.5 4.9 53 150-202 5-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 1.1E-12 2.4E-17 93.0 5.3 48 152-199 4-55 (55)
3 smart00353 HLH helix loop heli 99.3 3.6E-12 7.8E-17 88.9 6.5 50 154-203 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 2E-11 4.4E-16 118.6 7.1 61 141-201 225-288 (411)
5 KOG1319 bHLHZip transcription 99.1 9.7E-11 2.1E-15 104.5 4.3 63 152-214 65-140 (229)
6 KOG4304 Transcriptional repres 98.4 1.5E-07 3.2E-12 86.7 2.4 50 152-201 35-91 (250)
7 KOG2588 Predicted DNA-binding 98.2 1.7E-06 3.6E-11 91.3 5.7 62 148-209 275-336 (953)
8 KOG3561 Aryl-hydrocarbon recep 98.2 1.5E-06 3.3E-11 90.9 5.2 52 150-201 21-75 (803)
9 KOG2483 Upstream transcription 98.0 9.8E-06 2.1E-10 74.3 6.6 52 150-201 60-113 (232)
10 KOG3582 Mlx interactors and re 97.3 2E-05 4.3E-10 81.5 -2.7 91 149-241 651-746 (856)
11 KOG0561 bHLH transcription fac 97.2 0.00033 7.1E-09 67.0 3.9 49 152-201 63-113 (373)
12 PLN03217 transcription factor 97.0 0.0017 3.6E-08 52.1 5.9 53 161-213 19-76 (93)
13 KOG3960 Myogenic helix-loop-he 97.0 0.0017 3.7E-08 60.8 6.8 55 152-206 121-176 (284)
14 KOG4029 Transcription factor H 97.0 0.00069 1.5E-08 60.8 3.9 52 152-203 112-166 (228)
15 KOG3910 Helix loop helix trans 96.4 0.0055 1.2E-07 62.0 5.6 54 151-204 528-584 (632)
16 KOG4447 Transcription factor T 91.2 0.11 2.5E-06 45.7 1.7 49 152-201 81-131 (173)
17 KOG3558 Hypoxia-inducible fact 82.5 1 2.2E-05 47.7 2.8 45 153-197 50-97 (768)
18 KOG3898 Transcription factor N 81.3 4.1 8.8E-05 37.9 6.1 49 152-201 75-126 (254)
19 KOG3560 Aryl-hydrocarbon recep 75.3 3.1 6.6E-05 43.4 3.7 40 157-197 33-76 (712)
20 KOG3559 Transcriptional regula 72.1 4 8.6E-05 41.4 3.5 45 154-198 6-53 (598)
21 KOG4395 Transcription factor A 72.0 11 0.00024 35.9 6.2 50 152-201 177-228 (285)
22 KOG3582 Mlx interactors and re 49.3 6.5 0.00014 42.0 0.5 62 151-215 789-854 (856)
23 KOG4447 Transcription factor T 37.0 35 0.00076 30.4 3.0 23 156-178 29-51 (173)
24 KOG0139 Short-chain acyl-CoA d 28.7 42 0.00092 33.5 2.4 28 187-214 288-328 (398)
25 TIGR00986 3a0801s05tom22 mitoc 27.3 43 0.00094 29.3 2.0 35 163-198 50-84 (145)
26 COG3074 Uncharacterized protei 23.7 1.2E+02 0.0026 23.9 3.6 24 188-211 13-36 (79)
27 KOG4571 Activating transcripti 20.9 1.6E+02 0.0034 28.7 4.5 39 165-203 251-289 (294)
28 PF14689 SPOB_a: Sensor_kinase 20.7 1.9E+02 0.0041 21.1 4.0 42 156-205 15-56 (62)
29 PRK13729 conjugal transfer pil 20.5 7.2E+02 0.016 25.8 9.3 56 152-213 68-124 (475)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=3.4e-13 Score=95.50 Aligned_cols=53 Identities=38% Similarity=0.657 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHH
Q 024464 150 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQF 202 (267)
Q Consensus 150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv 202 (267)
...|+..||+||++||+.|..|++|||.+ ....+|+.||+.||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34799999999999999999999999999 344599999999999999999874
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.36 E-value=1.1e-12 Score=92.99 Aligned_cols=48 Identities=38% Similarity=0.749 Sum_probs=44.4
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC----CcCCChhhHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ 199 (267)
.|+..||+||++||+.|..|+.|||.+ ....+|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999987 234699999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=3.6e-12 Score=88.88 Aligned_cols=50 Identities=42% Similarity=0.587 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464 154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFL 203 (267)
Q Consensus 154 s~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~ 203 (267)
+..||+||++||+.|..|+.|||.+ ....+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999964 2334999999999999999998864
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.21 E-value=2e-11 Score=118.63 Aligned_cols=61 Identities=36% Similarity=0.598 Sum_probs=52.0
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHH
Q 024464 141 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 141 ~~RaRR~~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~q 201 (267)
..-.|.+++++.|+.+||+||++||++|+.|..|||.|+. ...|..||..+++||+.||+.
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~ 288 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQT 288 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence 3334555667889999999999999999999999999942 237999999999999999875
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.07 E-value=9.7e-11 Score=104.48 Aligned_cols=63 Identities=32% Similarity=0.611 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCc------CCChhhHHHHHHHHHHHHHHH-------HHHHHHHHHhCCC
Q 024464 152 SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQ-------FLSMKLEAVNTRM 214 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~~K------~~dKAsIL~eAI~YIk~LQ~q-------v~~Lk~E~~~~~~ 214 (267)
.|..+||+||+-|+..+..|++|||.|.. +..||.||.++|+||.+|.++ +.+|..++..++|
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~i 140 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI 140 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998842 247999999999999999876 6677777777764
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.38 E-value=1.5e-07 Score=86.73 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCCc-------CCChhhHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGCNK-------VIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~~K-------~~dKAsIL~eAI~YIk~LQ~q 201 (267)
.|-+.||+||++||+.+..|++|||.+-+ +.+||.||+-|++|++.||..
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999999997633 248999999999999999886
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.20 E-value=1.7e-06 Score=91.33 Aligned_cols=62 Identities=34% Similarity=0.564 Sum_probs=53.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024464 148 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEA 209 (267)
Q Consensus 148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~ 209 (267)
..+.+||.+|++-|..||++|..|+++||+..-+..|..+|..||+||++||...+.++++.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 45789999999999999999999999999985545899999999999999998744444433
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.20 E-value=1.5e-06 Score=90.88 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccCCCCC---cCCChhhHHHHHHHHHHHHHHH
Q 024464 150 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~---K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
..+|+.+||+||+++|.-|.+|.+|||.|. .++||-+||.+||.+|+.+...
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 357999999999999999999999999996 5569999999999999999773
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.04 E-value=9.8e-06 Score=74.25 Aligned_cols=52 Identities=31% Similarity=0.434 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccCCCCCcCC--ChhhHHHHHHHHHHHHHHH
Q 024464 150 TDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~--dKAsIL~eAI~YIk~LQ~q 201 (267)
...|+..||+||..|+++|..|+.+||...... ..++||++|++||+.|+.+
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~ 113 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERK 113 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhH
Confidence 457999999999999999999999999874322 2589999999999999775
No 10
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=97.34 E-value=2e-05 Score=81.47 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhhccCCCCCcC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccCCCc
Q 024464 149 ATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPK 224 (267)
Q Consensus 149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~----~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~~~~~ie~~~~~ 224 (267)
....|+.+|++||++|.-.|..|..++.+...+ +.++.-|+++++||..+|++...+.+|...++ .+|++++..
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr--~~~s~~~A~ 728 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR--KEISELNAV 728 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh--hhhHHHHHH
Confidence 457899999999999999999999999876443 35677799999999999999888888877766 667777777
Q ss_pred ccc-cccCCCCCCccccc
Q 024464 225 DFT-QQTFDTAGMPFVSQ 241 (267)
Q Consensus 225 ~~~-q~~~~~~G~p~~~q 241 (267)
+.. +|+.+++|+|.+..
T Consensus 729 ~~~~~q~p~aT~vp~~r~ 746 (856)
T KOG3582|consen 729 ISACQQPPPATGVPGTRL 746 (856)
T ss_pred HHHhhcCCCccCCcchhh
Confidence 644 89999999999988
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.19 E-value=0.00033 Score=67.00 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
.-|..||+|=.-||-.|..|+.|+|.- .|+ +||.||+.+.+||..|..+
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH 113 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999964 455 9999999999999999876
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.04 E-value=0.0017 Score=52.06 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhccCCCCCc-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464 161 REKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR 213 (267)
Q Consensus 161 RekIner~~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~ 213 (267)
-+.|++-+..|+.|+|.... +..-+-||+||..||+.|+++|..|.+.+..+.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999997521 125567999999999999999988887766653
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.03 E-value=0.0017 Score=60.79 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhc-cCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQD-LVPGCNKVIGKALVLDEIINYIQSLQRQFLSMK 206 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~-LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk 206 (267)
+-.+-||+|=.|+|+.|.+|+. -+++-+....|.-||..||+||..||.-++++-
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~ 176 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD 176 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999975 456667767899999999999999998766544
No 14
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.00 E-value=0.00069 Score=60.84 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQFL 203 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qv~ 203 (267)
.++..||.|=..+|..|..|+.+||.. .|+..|.-+|.-||.||++|++-++
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~ 166 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA 166 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence 577779999999999999999999963 4566999999999999999987654
No 15
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.38 E-value=0.0055 Score=62.02 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCC---CCcCCChhhHHHHHHHHHHHHHHHHHH
Q 024464 151 DSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQFLS 204 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~---~~K~~dKAsIL~eAI~YIk~LQ~qv~~ 204 (267)
...+.-||-|=..||+.|++|-.+.-- ..|..-|-.||..||.-|-.|+|||.+
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999988753 234446899999999999999999764
No 16
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=91.20 E-value=0.11 Score=45.72 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
.|++-||+|-..+|+.|.+|+.++|.. .|. +|.-.|+-|--||-+|=+-
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhhc
Confidence 599999999999999999999999976 454 8888999999999999544
No 17
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=82.48 E-value=1 Score=47.71 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHH
Q 024464 153 HSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQS 197 (267)
Q Consensus 153 Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~ 197 (267)
---|-|.||.|=|+-|.+|..+||-- .-..|||+|+.-||-|++-
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 34578999999999999999999932 2224999999999999864
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=81.28 E-value=4.1 Score=37.89 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=41.3
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
.=+.-||.|=-.+|+-|+.|+.+||.. .|+ .|.-.|.-+=+||..|++-
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhccc
Confidence 356679999999999999999999953 344 8999999999999999754
No 19
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=75.33 E-value=3.1 Score=43.40 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhccCCC----CCcCCChhhHHHHHHHHHHH
Q 024464 157 ERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQS 197 (267)
Q Consensus 157 ERkRRekIner~~~Lr~LVP~----~~K~~dKAsIL~eAI~YIk~ 197 (267)
-++-|+++|--++.|.+|+|- ++|+ ||-+||.-+|-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 355689999999999999994 4676 999999999999853
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=72.07 E-value=4 Score=41.40 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHH
Q 024464 154 SLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 198 (267)
Q Consensus 154 s~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~L 198 (267)
..+.|.||++=|.-|..|..|+|-. .-..||++|+.-|-.|||--
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 3467899999999999999999954 22359999999999999853
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=71.97 E-value=11 Score=35.88 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
+-+..||+|=..+|..|+.|+..||... ++.+|--.|+-+-.||--|-..
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHh
Confidence 4677899999999999999999999763 3347888999999999888544
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=49.31 E-value=6.5 Score=42.04 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=50.9
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCCC----CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 024464 151 DSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMN 215 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~~~ 215 (267)
..|+-++|++|-.+-++|..|..|.|.. .++..+++||. +.|+.+|+.-..+.+....++|.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~krl~ 854 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKRLE 854 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhhccc
Confidence 4688899999999999999999999964 44568899998 89999999877777666666553
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=36.99 E-value=35 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC
Q 024464 156 AERARREKISERMKILQDLVPGC 178 (267)
Q Consensus 156 aERkRRekIner~~~Lr~LVP~~ 178 (267)
.||.|..++++.+.-|..|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58889999999999999999987
No 24
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=28.69 E-value=42 Score=33.52 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHhCCC
Q 024464 187 VLDEIINYIQS-------------LQRQFLSMKLEAVNTRM 214 (267)
Q Consensus 187 IL~eAI~YIk~-------------LQ~qv~~Lk~E~~~~~~ 214 (267)
-++.||+|++. ||.|+..|..|+...|+
T Consensus 288 c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRl 328 (398)
T KOG0139|consen 288 CFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARL 328 (398)
T ss_pred HHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46889999865 88888888777766553
No 25
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=27.29 E-value=43 Score=29.30 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHH
Q 024464 163 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSL 198 (267)
Q Consensus 163 kIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~L 198 (267)
-|-+||.+|+++||..... .-.++..-+..++|.+
T Consensus 50 Tl~ERi~ALkDm~Pp~~R~-~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTRG-WIYHKYSTTTNFVKST 84 (145)
T ss_pred cHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 4778899999999976432 2244455555555553
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=1.2e+02 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024464 188 LDEIINYIQSLQRQFLSMKLEAVN 211 (267)
Q Consensus 188 L~eAI~YIk~LQ~qv~~Lk~E~~~ 211 (267)
++-||+-|.-||.++..|+.+...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567888999888888877765543
No 27
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.94 E-value=1.6e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHH
Q 024464 165 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFL 203 (267)
Q Consensus 165 ner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~ 203 (267)
..-+.+|..|==-..++.+.+.=|..=|.|+|.|-.++.
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333345789999999999999866654
No 28
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.73 E-value=1.9e+02 Score=21.06 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHH
Q 024464 156 AERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSM 205 (267)
Q Consensus 156 aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~L 205 (267)
.=|.-|-.+...+.++..|+--. + .++|.+||+.+-.+++.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllqlg-~-------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQLG-K-------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC-C-------HHHHHHHHHHHHHHHHHH
Confidence 34677778888888888887533 2 357899999998876654
No 29
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.49 E-value=7.2e+02 Score=25.77 Aligned_cols=56 Identities=7% Similarity=0.031 Sum_probs=38.0
Q ss_pred cccHHHHH-HHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464 152 SHSLAERA-RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR 213 (267)
Q Consensus 152 ~Hs~aERk-RRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~ 213 (267)
.+.+.|.+ +...|..+|..|+.=+--. ...+++...-|+.|+.+++.|+.++..+.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~------saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVL------NKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36677777 8888999999995221111 14455667777888888888888875543
Done!