Query 024464
Match_columns 267
No_of_seqs 210 out of 864
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 5.3E-17 1.8E-21 132.2 7.5 74 138-211 16-92 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 3.3E-17 1.1E-21 125.5 4.1 64 150-213 7-70 (82)
3 1an4_A Protein (upstream stimu 99.6 1.1E-15 3.8E-20 111.6 3.8 55 148-202 4-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.6 6.6E-16 2.3E-20 113.5 2.3 53 150-202 3-61 (63)
5 4h10_B Circadian locomoter out 99.5 3.2E-15 1.1E-19 112.9 4.6 53 151-203 10-62 (71)
6 1hlo_A Protein (transcription 99.5 1.1E-14 3.9E-19 110.4 5.6 61 151-212 14-76 (80)
7 4h10_A ARYL hydrocarbon recept 99.5 1.6E-15 5.6E-20 114.7 0.7 51 149-200 9-63 (73)
8 1nkp_B MAX protein, MYC proto- 99.5 1.9E-14 6.6E-19 109.6 6.4 61 151-212 4-66 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 4.2E-14 1.4E-18 109.9 6.3 58 152-209 9-68 (88)
10 1nlw_A MAD protein, MAX dimeri 99.4 7.5E-13 2.6E-17 101.3 6.9 61 152-212 4-66 (80)
11 3u5v_A Protein MAX, transcript 99.4 3.3E-13 1.1E-17 102.7 4.9 55 151-205 7-64 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 3.4E-10 1.2E-14 84.5 6.3 51 152-202 15-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 5.3E-10 1.8E-14 81.4 5.7 51 152-202 5-57 (60)
14 4f3l_A Mclock, circadian locom 99.0 4.5E-10 1.6E-14 103.0 6.1 53 149-201 12-64 (361)
15 4ath_A MITF, microphthalmia-as 98.9 2.3E-09 7.8E-14 83.2 6.8 53 160-212 3-58 (83)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.4E-10 2.2E-14 103.5 3.2 52 148-200 12-67 (387)
17 2lfh_A DNA-binding protein inh 98.6 1.7E-08 5.8E-13 75.7 2.1 46 155-200 20-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.2E-05 4.1E-10 63.9 6.6 47 157-203 33-81 (97)
19 3muj_A Transcription factor CO 40.9 34 0.0012 28.5 4.7 36 163-198 95-133 (138)
20 2l5g_A GPS2 protein, G protein 32.5 72 0.0025 21.2 4.3 29 182-210 4-32 (38)
21 2wt7_A Proto-oncogene protein 28.8 1.2E+02 0.0042 21.2 5.4 16 157-172 1-16 (63)
22 2jee_A YIIU; FTSZ, septum, coi 25.6 65 0.0022 24.5 3.6 25 187-211 14-38 (81)
23 2er8_A Regulatory protein Leu3 21.9 72 0.0025 21.9 3.1 22 192-213 48-69 (72)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.68 E-value=5.3e-17 Score=132.22 Aligned_cols=74 Identities=32% Similarity=0.426 Sum_probs=51.8
Q ss_pred ccccccccCCCCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024464 138 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQFLSMKLEAVN 211 (267)
Q Consensus 138 ~~i~~RaRR~~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~ 211 (267)
+..+..+++.+.+++|+++||+||++||++|.+|++|||+|.+ +++|++||++||+||++||++++.|+.+...
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888889999999999999999999999999999853 3589999999999999999999988765443
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=3.3e-17 Score=125.54 Aligned_cols=64 Identities=31% Similarity=0.473 Sum_probs=57.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464 150 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR 213 (267)
Q Consensus 150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~ 213 (267)
..+|+.+||+||++||++|.+|++|||+++.++||++||++||+||++||.+++.|+.+...++
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999855569999999999999999999998888877654
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=1.1e-15 Score=111.62 Aligned_cols=55 Identities=27% Similarity=0.428 Sum_probs=49.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc-----CCChhhHHHHHHHHHHHHHHHH
Q 024464 148 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQF 202 (267)
Q Consensus 148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qv 202 (267)
....+|+.+||+||++||+.|..|++|||.|.. .++|++||++||+||+.||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999862 3599999999999999998763
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.56 E-value=6.6e-16 Score=113.53 Aligned_cols=53 Identities=32% Similarity=0.453 Sum_probs=47.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccCCCCCc------CCChhhHHHHHHHHHHHHHHHH
Q 024464 150 TDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQF 202 (267)
Q Consensus 150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K------~~dKAsIL~eAI~YIk~LQ~qv 202 (267)
.++|+++||+||++||..|..|+.|||.+.+ ..+||+||+.||+||+.||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999997633 3479999999999999999875
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=112.86 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=48.5
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHH
Q 024464 151 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFL 203 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~ 203 (267)
.+|+.+||+||++||++|..|++|||++..++||++||++||+||+.||.++.
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999999999999999999875445999999999999999999854
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=1.1e-14 Score=110.43 Aligned_cols=61 Identities=30% Similarity=0.479 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464 151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT 212 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~ 212 (267)
..|+..||+||.+||+.|..|++|||.+ .| .+|+.||..||+||+.||++++.|+.+...+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 35 5999999999999999999999998887654
No 7
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=1.6e-15 Score=114.66 Aligned_cols=51 Identities=33% Similarity=0.557 Sum_probs=46.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhhccCCCC----CcCCChhhHHHHHHHHHHHHHH
Q 024464 149 ATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR 200 (267)
Q Consensus 149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ~ 200 (267)
...+|+.+||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999999987 454 999999999999999963
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.51 E-value=1.9e-14 Score=109.55 Aligned_cols=61 Identities=30% Similarity=0.479 Sum_probs=53.9
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464 151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT 212 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~ 212 (267)
.+|+..||+||++||+.|..|+++||.+ .| ++|++||..||+||+.||++++.|+.+...+
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999986 45 5999999999999999999877777666554
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=4.2e-14 Score=109.85 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=50.4
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEA 209 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~ 209 (267)
.|+..||+||++||++|..|+++||.+. .+.+|++||.+||+||++||.+.+.+..+.
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999863 335999999999999999999866554443
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=7.5e-13 Score=101.34 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464 152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT 212 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~ 212 (267)
.|+..||+||..||+.|..|+++||.+. .+.+|+.||.+||+||+.||++.+.|..+...+
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999762 234899999999999999999987777666554
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.37 E-value=3.3e-13 Score=102.68 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHHHH
Q 024464 151 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQFLSM 205 (267)
Q Consensus 151 ~~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qv~~L 205 (267)
..|+..||+||++||+.|..|+.+||.+ .|..+|+.||..||+||++||++++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999953 343368999999999999999998854
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.03 E-value=3.4e-10 Score=84.46 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC-CcCCChhhHHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQF 202 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~-~K~~dKAsIL~eAI~YIk~LQ~qv 202 (267)
.|+..||+|+..||+.|..|+++||.. +++.+|+.||..||+||..||+.+
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999975 344599999999999999998753
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.99 E-value=5.3e-10 Score=81.45 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHH
Q 024464 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQF 202 (267)
Q Consensus 152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv 202 (267)
.|+.-||+|+..||+.|..|+.+||.. +++.+|..+|..||+||..||+.+
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999976 345699999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=4.5e-10 Score=103.05 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHH
Q 024464 149 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 201 (267)
Q Consensus 149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~q 201 (267)
...+|+.+||+||++||..|..|+.|||....++||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999999995443459999999999999999754
No 15
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.90 E-value=2.3e-09 Score=83.21 Aligned_cols=53 Identities=30% Similarity=0.392 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464 160 RREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQFLSMKLEAVNT 212 (267)
Q Consensus 160 RRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~ 212 (267)
-|++||++|++|..|||.++. ..+|++||.++|+||++||++++.|+.+..+.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999998743 24899999999999999999988777666554
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=6.4e-10 Score=103.48 Aligned_cols=52 Identities=31% Similarity=0.478 Sum_probs=46.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhhccCCC----CCcCCChhhHHHHHHHHHHHHHH
Q 024464 148 QATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQR 200 (267)
Q Consensus 148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~----~~K~~dKAsIL~eAI~YIk~LQ~ 200 (267)
+++++|+.+||+||++||+.|..|+.|||. ..|+ ||++||..||.||+.|+.
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence 345689999999999999999999999994 4565 999999999999999974
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.57 E-value=1.7e-08 Score=75.75 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHH
Q 024464 155 LAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR 200 (267)
Q Consensus 155 ~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~ 200 (267)
--||+|...||+.|..|+.+||.. +++.+|.-+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 457888899999999999999976 3456999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.99 E-value=1.2e-05 Score=63.92 Aligned_cols=47 Identities=28% Similarity=0.397 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464 157 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFL 203 (267)
Q Consensus 157 ERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~ 203 (267)
||.|=..||+.|..|+.+||.. +++.+|.-+|.-||+||..||+.+.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 5778888999999999999976 4456999999999999999988765
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=40.92 E-value=34 Score=28.51 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.8
Q ss_pred HHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHH
Q 024464 163 KISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSL 198 (267)
Q Consensus 163 kIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~L 198 (267)
-|...|..|+.+||-- ....-|-.||+.|-+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5889999999999953 23347999999999998876
No 20
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.52 E-value=72 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024464 182 IGKALVLDEIINYIQSLQRQFLSMKLEAV 210 (267)
Q Consensus 182 ~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~ 210 (267)
+.-+..|+++-+-|..|+.++++|+.|.-
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999988764
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.85 E-value=1.2e+02 Score=21.16 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 024464 157 ERARREKISERMKILQ 172 (267)
Q Consensus 157 ERkRRekIner~~~Lr 172 (267)
||++|.+...++.+.+
T Consensus 1 Ekr~rrrerNR~AA~r 16 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAK 16 (63)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHH
Confidence 3444555555555544
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.63 E-value=65 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024464 187 VLDEIINYIQSLQRQFLSMKLEAVN 211 (267)
Q Consensus 187 IL~eAI~YIk~LQ~qv~~Lk~E~~~ 211 (267)
=++.||+-|.-||.++..|+.+...
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999998888888776654
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=21.87 E-value=72 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 024464 192 INYIQSLQRQFLSMKLEAVNTR 213 (267)
Q Consensus 192 I~YIk~LQ~qv~~Lk~E~~~~~ 213 (267)
-.||..|++++..|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999998887776653
Done!