Query 024465
Match_columns 267
No_of_seqs 177 out of 1469
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 1.9E-32 4.2E-37 282.7 26.4 191 59-259 687-880 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 6.4E-32 1.4E-36 278.0 26.5 189 59-258 663-854 (854)
3 PRK00275 glnD PII uridylyl-tra 100.0 1.4E-29 2.9E-34 261.8 26.9 200 58-265 686-893 (895)
4 TIGR01693 UTase_glnD [Protein- 100.0 2.5E-29 5.4E-34 259.3 26.2 194 58-257 653-849 (850)
5 COG2844 GlnD UTP:GlnB (protein 100.0 1.9E-28 4.2E-33 243.8 22.4 194 57-260 668-864 (867)
6 PRK05092 PII uridylyl-transfer 100.0 6E-28 1.3E-32 250.9 26.6 199 59-264 718-921 (931)
7 PRK04374 PII uridylyl-transfer 100.0 8.7E-28 1.9E-32 247.4 26.7 189 59-258 675-867 (869)
8 PRK03381 PII uridylyl-transfer 100.0 8.3E-27 1.8E-31 238.1 25.1 186 59-254 586-773 (774)
9 PRK03059 PII uridylyl-transfer 100.0 1.3E-26 2.8E-31 238.8 26.0 190 58-258 663-855 (856)
10 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.7E-20 3.7E-25 138.8 10.3 72 188-259 1-74 (75)
11 cd04895 ACT_ACR_1 ACT domain-c 99.8 9.5E-20 2.1E-24 133.8 9.7 68 188-255 1-70 (72)
12 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.8E-19 6E-24 132.3 11.1 73 73-146 1-73 (75)
13 cd04896 ACT_ACR-like_3 ACT dom 99.8 2E-19 4.3E-24 133.1 10.1 71 189-260 1-75 (75)
14 cd04895 ACT_ACR_1 ACT domain-c 99.7 3.6E-16 7.7E-21 114.9 10.7 69 73-142 1-69 (72)
15 cd04896 ACT_ACR-like_3 ACT dom 99.6 5.2E-15 1.1E-19 109.5 10.4 71 74-146 1-73 (75)
16 cd04900 ACT_UUR-like_1 ACT dom 99.6 6.6E-15 1.4E-19 108.1 10.6 72 73-145 1-73 (73)
17 cd04925 ACT_ACR_2 ACT domain-c 99.6 8.1E-15 1.8E-19 108.1 11.0 72 74-146 1-73 (74)
18 PRK11589 gcvR glycine cleavage 99.6 1.4E-14 2.9E-19 125.4 14.0 138 71-236 6-145 (190)
19 cd04925 ACT_ACR_2 ACT domain-c 99.6 7.8E-15 1.7E-19 108.2 10.4 70 189-258 1-73 (74)
20 cd04927 ACT_ACR-like_2 Second 99.6 1.1E-14 2.3E-19 108.2 10.7 72 190-261 2-75 (76)
21 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.7E-14 5.8E-19 104.8 10.6 69 189-257 2-73 (73)
22 cd04927 ACT_ACR-like_2 Second 99.5 9.9E-14 2.1E-18 102.9 11.2 70 75-146 2-72 (76)
23 PRK00275 glnD PII uridylyl-tra 99.4 2.4E-12 5.3E-17 134.0 13.8 88 59-147 800-887 (895)
24 PRK05007 PII uridylyl-transfer 99.4 2.8E-12 6.1E-17 133.4 12.4 86 59-146 794-879 (884)
25 PRK01759 glnD PII uridylyl-tra 99.4 2.6E-12 5.7E-17 133.2 11.8 85 59-145 769-853 (854)
26 COG2716 GcvR Glycine cleavage 99.4 3.4E-12 7.5E-17 107.3 9.5 156 71-255 3-161 (176)
27 cd04928 ACT_TyrKc Uncharacteri 99.4 6.9E-12 1.5E-16 91.1 9.6 52 74-126 2-54 (68)
28 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.9E-11 4E-16 88.0 10.4 69 189-257 1-70 (70)
29 PRK04374 PII uridylyl-transfer 99.3 1.3E-11 2.9E-16 128.0 13.2 86 59-146 782-867 (869)
30 cd04926 ACT_ACR_4 C-terminal 99.3 1.9E-11 4.2E-16 89.5 10.4 66 74-141 2-67 (72)
31 cd04926 ACT_ACR_4 C-terminal 99.3 2.4E-11 5.2E-16 89.0 10.1 66 188-253 1-67 (72)
32 PRK05092 PII uridylyl-transfer 99.3 3.2E-11 6.9E-16 126.3 13.6 88 59-147 829-916 (931)
33 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 6.7E-11 1.4E-15 85.1 10.4 69 74-144 1-69 (70)
34 PRK00227 glnD PII uridylyl-tra 99.3 1.2E-10 2.5E-15 118.0 15.4 143 74-257 547-690 (693)
35 PRK03381 PII uridylyl-transfer 99.2 5E-11 1.1E-15 122.6 12.0 80 59-141 693-772 (774)
36 PRK03059 PII uridylyl-transfer 99.2 9E-11 2E-15 121.8 13.2 83 59-145 772-854 (856)
37 TIGR01693 UTase_glnD [Protein- 99.2 1.5E-10 3.3E-15 120.2 12.1 85 59-145 765-849 (850)
38 COG2844 GlnD UTP:GlnB (protein 99.0 9E-10 2E-14 111.2 10.6 84 60-145 778-861 (867)
39 cd04873 ACT_UUR-ACR-like ACT d 99.0 3.5E-09 7.7E-14 75.5 10.3 69 189-257 1-70 (70)
40 cd04873 ACT_UUR-ACR-like ACT d 99.0 4.1E-09 8.9E-14 75.2 10.4 69 74-144 1-69 (70)
41 cd04928 ACT_TyrKc Uncharacteri 98.9 1.1E-08 2.3E-13 74.5 9.8 64 189-257 2-67 (68)
42 PF13740 ACT_6: ACT domain; PD 98.6 4.9E-07 1.1E-11 66.7 10.3 65 73-145 2-66 (76)
43 PF01842 ACT: ACT domain; Int 98.5 1.3E-06 2.7E-11 61.4 10.0 61 74-143 1-63 (66)
44 PF13740 ACT_6: ACT domain; PD 98.5 1.2E-06 2.6E-11 64.6 9.5 64 188-256 2-65 (76)
45 PF01842 ACT: ACT domain; Int 98.4 5.6E-07 1.2E-11 63.2 5.9 39 189-227 1-39 (66)
46 cd04893 ACT_GcvR_1 ACT domains 98.4 2.2E-06 4.8E-11 63.4 9.1 62 74-143 2-63 (77)
47 cd04870 ACT_PSP_1 CT domains f 98.3 4.7E-06 1E-10 61.1 8.1 64 75-145 1-64 (75)
48 cd04870 ACT_PSP_1 CT domains f 98.3 3.2E-06 7E-11 62.0 7.0 46 190-235 1-46 (75)
49 cd04894 ACT_ACR-like_1 ACT dom 98.3 3.8E-06 8.3E-11 59.6 6.6 66 74-143 1-66 (69)
50 PRK00194 hypothetical protein; 98.1 3E-05 6.5E-10 58.6 8.7 47 188-234 3-49 (90)
51 cd04875 ACT_F4HF-DF N-terminal 98.1 1.4E-05 3.1E-10 58.2 6.6 44 190-235 1-44 (74)
52 cd04893 ACT_GcvR_1 ACT domains 98.0 4.7E-05 1E-09 56.3 8.9 40 189-228 2-41 (77)
53 cd04872 ACT_1ZPV ACT domain pr 98.0 2.6E-05 5.6E-10 58.9 7.5 64 74-143 2-65 (88)
54 cd04869 ACT_GcvR_2 ACT domains 98.0 2.8E-05 6.2E-10 57.2 7.3 45 191-235 2-48 (81)
55 cd04875 ACT_F4HF-DF N-terminal 98.0 2.6E-05 5.6E-10 56.8 6.7 65 75-143 1-65 (74)
56 cd04872 ACT_1ZPV ACT domain pr 98.0 5E-05 1.1E-09 57.3 8.5 46 189-234 2-47 (88)
57 cd04869 ACT_GcvR_2 ACT domains 98.0 6.5E-05 1.4E-09 55.3 8.8 36 75-110 1-36 (81)
58 COG4747 ACT domain-containing 97.9 0.00035 7.6E-09 55.9 12.4 114 74-236 4-118 (142)
59 PF13291 ACT_4: ACT domain; PD 97.9 5.2E-05 1.1E-09 55.9 7.3 63 188-254 6-70 (80)
60 PRK00194 hypothetical protein; 97.9 8.5E-05 1.9E-09 56.1 8.1 48 73-120 3-50 (90)
61 cd04894 ACT_ACR-like_1 ACT dom 97.8 7.4E-05 1.6E-09 53.1 6.2 67 189-256 1-67 (69)
62 PF13291 ACT_4: ACT domain; PD 97.7 0.0003 6.4E-09 51.9 8.9 62 74-142 7-70 (80)
63 PRK11589 gcvR glycine cleavage 97.6 0.00018 3.9E-09 62.5 7.3 49 187-235 7-55 (190)
64 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00061 1.3E-08 49.0 8.5 61 191-255 2-63 (74)
65 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00098 2.1E-08 48.0 9.6 61 76-143 2-63 (74)
66 cd04905 ACT_CM-PDT C-terminal 97.5 0.0014 3.1E-08 48.3 9.8 66 189-255 2-68 (80)
67 PRK13010 purU formyltetrahydro 97.5 0.0032 7E-08 58.1 13.6 36 72-107 8-43 (289)
68 PRK06027 purU formyltetrahydro 97.4 0.0011 2.3E-08 61.1 10.0 44 188-235 6-51 (286)
69 COG3830 ACT domain-containing 97.4 0.00021 4.5E-09 54.5 4.4 40 188-227 3-42 (90)
70 PRK06027 purU formyltetrahydro 97.4 0.0074 1.6E-07 55.6 15.3 67 72-144 5-73 (286)
71 cd04889 ACT_PDH-BS-like C-term 97.4 0.00068 1.5E-08 46.4 6.3 46 191-236 1-47 (56)
72 cd04877 ACT_TyrR N-terminal AC 97.3 0.0011 2.5E-08 48.2 7.0 35 190-224 2-36 (74)
73 cd04908 ACT_Bt0572_1 N-termina 97.3 0.0013 2.8E-08 46.8 7.0 45 189-235 2-46 (66)
74 cd04877 ACT_TyrR N-terminal AC 97.3 0.0016 3.4E-08 47.4 7.4 59 75-143 2-60 (74)
75 cd04879 ACT_3PGDH-like ACT_3PG 97.2 0.0022 4.8E-08 44.6 7.9 44 191-234 2-47 (71)
76 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0033 7.1E-08 44.1 8.7 62 76-143 1-66 (73)
77 TIGR00655 PurU formyltetrahydr 97.2 0.002 4.4E-08 59.1 9.1 63 75-143 2-66 (280)
78 PRK13011 formyltetrahydrofolat 97.2 0.0013 2.7E-08 60.7 7.7 46 188-235 7-52 (286)
79 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0037 8.1E-08 43.8 8.3 34 191-224 1-34 (73)
80 PRK13011 formyltetrahydrofolat 97.1 0.019 4.1E-07 52.9 14.9 66 72-144 6-73 (286)
81 cd04878 ACT_AHAS N-terminal AC 97.1 0.0024 5.2E-08 44.7 7.0 60 190-254 2-63 (72)
82 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.1 0.0037 7.9E-08 44.5 7.7 61 190-254 2-64 (79)
83 COG3830 ACT domain-containing 97.1 0.001 2.2E-08 50.8 4.7 67 73-145 3-69 (90)
84 cd04909 ACT_PDH-BS C-terminal 97.1 0.0067 1.5E-07 43.0 8.9 47 189-235 2-50 (69)
85 cd04902 ACT_3PGDH-xct C-termin 97.1 0.0035 7.6E-08 44.6 7.4 57 191-250 2-60 (73)
86 PRK13010 purU formyltetrahydro 97.0 0.0037 8E-08 57.7 9.1 35 188-222 9-43 (289)
87 TIGR00119 acolac_sm acetolacta 97.0 0.0051 1.1E-07 51.9 9.1 66 189-257 2-67 (157)
88 cd04931 ACT_PAH ACT domain of 97.0 0.0089 1.9E-07 45.7 9.5 70 188-259 14-84 (90)
89 TIGR00655 PurU formyltetrahydr 97.0 0.006 1.3E-07 56.0 10.2 44 190-235 2-45 (280)
90 COG0788 PurU Formyltetrahydrof 97.0 0.0023 5E-08 58.0 7.1 39 72-110 6-44 (287)
91 cd04903 ACT_LSD C-terminal ACT 96.9 0.0078 1.7E-07 42.0 8.3 33 191-223 2-34 (71)
92 cd04888 ACT_PheB-BS C-terminal 96.9 0.0092 2E-07 42.9 8.8 62 75-143 2-65 (76)
93 PRK06737 acetolactate synthase 96.9 0.007 1.5E-07 44.9 8.1 64 189-255 3-66 (76)
94 cd04888 ACT_PheB-BS C-terminal 96.9 0.0047 1E-07 44.4 7.1 63 190-255 2-65 (76)
95 CHL00100 ilvH acetohydroxyacid 96.9 0.0059 1.3E-07 52.3 8.7 36 189-224 3-38 (174)
96 PRK08178 acetolactate synthase 96.9 0.0091 2E-07 46.2 8.5 66 187-256 7-72 (96)
97 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.011 2.4E-07 42.0 8.6 62 75-142 2-64 (79)
98 cd04882 ACT_Bt0572_2 C-termina 96.8 0.0067 1.5E-07 42.1 7.2 35 191-225 2-36 (65)
99 PRK13562 acetolactate synthase 96.8 0.0073 1.6E-07 45.6 7.7 65 74-143 3-67 (84)
100 COG0788 PurU Formyltetrahydrof 96.8 0.0051 1.1E-07 55.8 8.0 63 187-251 6-73 (287)
101 PRK08178 acetolactate synthase 96.8 0.01 2.2E-07 46.0 8.4 66 71-143 6-71 (96)
102 PRK06737 acetolactate synthase 96.8 0.01 2.2E-07 44.0 8.0 64 74-143 3-66 (76)
103 PRK11895 ilvH acetolactate syn 96.8 0.012 2.5E-07 49.9 9.2 65 189-256 3-67 (161)
104 cd04901 ACT_3PGDH C-terminal A 96.7 0.002 4.3E-08 45.5 3.6 44 191-234 2-45 (69)
105 cd04880 ACT_AAAH-PDT-like ACT 96.7 0.026 5.7E-07 40.8 9.5 63 192-255 3-66 (75)
106 cd04878 ACT_AHAS N-terminal AC 96.6 0.026 5.7E-07 39.3 9.1 40 75-114 2-42 (72)
107 cd04889 ACT_PDH-BS-like C-term 96.6 0.0091 2E-07 40.7 6.4 44 76-119 1-45 (56)
108 cd04909 ACT_PDH-BS C-terminal 96.6 0.028 6.1E-07 39.8 9.1 37 74-110 2-38 (69)
109 cd04874 ACT_Af1403 N-terminal 96.6 0.021 4.6E-07 39.9 8.3 36 75-110 2-37 (72)
110 cd04904 ACT_AAAH ACT domain of 96.6 0.018 4E-07 42.0 8.1 62 190-254 2-64 (74)
111 PRK00227 glnD PII uridylyl-tra 96.6 0.0097 2.1E-07 61.0 8.9 72 188-260 546-620 (693)
112 PRK13562 acetolactate synthase 96.6 0.015 3.2E-07 44.0 7.7 64 190-256 4-68 (84)
113 cd04874 ACT_Af1403 N-terminal 96.6 0.014 3E-07 40.8 7.3 35 190-224 2-36 (72)
114 PRK08577 hypothetical protein; 96.5 0.019 4E-07 46.9 8.8 39 187-225 55-93 (136)
115 cd04883 ACT_AcuB C-terminal AC 96.5 0.022 4.7E-07 40.5 8.1 46 189-234 2-49 (72)
116 cd04908 ACT_Bt0572_1 N-termina 96.4 0.011 2.4E-07 41.8 6.1 45 74-120 2-46 (66)
117 TIGR00119 acolac_sm acetolacta 96.4 0.031 6.7E-07 47.1 9.2 62 75-143 3-65 (157)
118 PRK08577 hypothetical protein; 96.3 0.081 1.8E-06 43.1 11.5 49 62-110 43-93 (136)
119 CHL00100 ilvH acetohydroxyacid 96.3 0.034 7.3E-07 47.7 9.4 66 74-145 3-68 (174)
120 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.017 3.8E-07 40.0 6.5 44 76-119 2-47 (71)
121 PRK11895 ilvH acetolactate syn 96.3 0.041 8.9E-07 46.6 9.8 63 74-143 3-66 (161)
122 PRK11152 ilvM acetolactate syn 96.2 0.027 5.8E-07 41.8 7.3 46 189-234 4-51 (76)
123 cd02116 ACT ACT domains are co 96.2 0.022 4.8E-07 36.4 6.3 35 191-225 1-35 (60)
124 cd04884 ACT_CBS C-terminal ACT 96.2 0.033 7.1E-07 40.0 7.7 34 76-109 2-35 (72)
125 cd04903 ACT_LSD C-terminal ACT 96.2 0.054 1.2E-06 37.6 8.6 34 76-109 2-35 (71)
126 cd04884 ACT_CBS C-terminal ACT 96.2 0.036 7.8E-07 39.8 7.7 34 191-224 2-35 (72)
127 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.088 1.9E-06 35.3 9.1 35 76-110 1-35 (71)
128 PRK07334 threonine dehydratase 96.0 0.034 7.4E-07 53.4 9.0 64 188-255 326-394 (403)
129 cd04882 ACT_Bt0572_2 C-termina 96.0 0.045 9.7E-07 37.8 7.4 36 75-110 1-36 (65)
130 cd04905 ACT_CM-PDT C-terminal 96.0 0.12 2.6E-06 37.9 9.9 65 74-142 2-67 (80)
131 PRK04435 hypothetical protein; 96.0 0.091 2E-06 43.7 10.3 76 62-143 58-134 (147)
132 PRK07334 threonine dehydratase 96.0 0.054 1.2E-06 52.0 10.0 63 74-143 327-394 (403)
133 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.038 8.3E-07 37.2 6.7 35 191-225 1-35 (71)
134 cd02116 ACT ACT domains are co 95.9 0.041 8.8E-07 35.1 6.4 35 76-110 1-35 (60)
135 PRK11152 ilvM acetolactate syn 95.9 0.063 1.4E-06 39.8 7.9 61 74-143 4-66 (76)
136 COG2716 GcvR Glycine cleavage 95.8 0.0059 1.3E-07 51.9 2.4 50 187-236 4-53 (176)
137 TIGR00656 asp_kin_monofn aspar 95.8 0.67 1.4E-05 44.3 16.7 108 71-219 258-371 (401)
138 cd04929 ACT_TPH ACT domain of 95.7 0.076 1.6E-06 39.0 7.7 51 190-240 2-53 (74)
139 TIGR00719 sda_beta L-serine de 95.7 0.051 1.1E-06 47.7 7.9 60 186-248 146-207 (208)
140 cd04901 ACT_3PGDH C-terminal A 95.6 0.011 2.3E-07 41.7 2.6 38 76-113 2-39 (69)
141 PRK04435 hypothetical protein; 95.4 0.11 2.3E-06 43.2 8.4 66 186-254 67-133 (147)
142 cd04883 ACT_AcuB C-terminal AC 95.4 0.091 2E-06 37.2 7.0 36 74-109 2-37 (72)
143 PRK11899 prephenate dehydratas 95.3 0.1 2.2E-06 48.0 8.9 54 188-241 194-248 (279)
144 PF13710 ACT_5: ACT domain; PD 95.3 0.042 9.2E-07 39.0 5.0 39 197-235 1-39 (63)
145 cd04902 ACT_3PGDH-xct C-termin 95.3 0.061 1.3E-06 38.1 5.8 44 76-119 2-47 (73)
146 PRK06635 aspartate kinase; Rev 95.2 0.6 1.3E-05 44.6 14.2 111 71-220 260-375 (404)
147 PRK06291 aspartate kinase; Pro 95.2 2.3 5.1E-05 41.7 18.4 110 70-220 318-433 (465)
148 PRK11092 bifunctional (p)ppGpp 95.1 0.16 3.5E-06 52.4 10.3 63 74-143 627-690 (702)
149 PRK10872 relA (p)ppGpp synthet 95.0 0.097 2.1E-06 54.2 8.6 63 188-255 666-731 (743)
150 cd04885 ACT_ThrD-I Tandem C-te 95.0 0.17 3.7E-06 36.0 7.5 60 77-143 2-61 (68)
151 PRK10872 relA (p)ppGpp synthet 95.0 0.16 3.4E-06 52.7 9.8 63 74-143 667-731 (743)
152 PRK11092 bifunctional (p)ppGpp 94.9 0.17 3.6E-06 52.2 10.0 62 188-254 626-689 (702)
153 cd04898 ACT_ACR-like_4 ACT dom 94.9 0.046 1E-06 40.3 4.2 67 191-257 3-74 (77)
154 PRK11790 D-3-phosphoglycerate 94.7 0.067 1.5E-06 51.6 6.2 61 187-250 337-397 (409)
155 cd04898 ACT_ACR-like_4 ACT dom 94.7 0.076 1.7E-06 39.2 4.9 70 76-145 3-74 (77)
156 PF13710 ACT_5: ACT domain; PD 94.6 0.12 2.7E-06 36.6 5.8 56 82-143 1-56 (63)
157 cd04880 ACT_AAAH-PDT-like ACT 94.5 0.61 1.3E-05 33.5 9.4 63 76-142 2-65 (75)
158 COG0077 PheA Prephenate dehydr 94.4 0.21 4.5E-06 45.9 8.3 55 188-242 194-249 (279)
159 TIGR00691 spoT_relA (p)ppGpp s 94.4 0.26 5.7E-06 50.7 10.0 62 188-254 610-673 (683)
160 cd04930 ACT_TH ACT domain of t 94.4 0.15 3.2E-06 40.8 6.4 53 188-240 41-94 (115)
161 TIGR00691 spoT_relA (p)ppGpp s 94.3 0.36 7.8E-06 49.7 10.8 64 73-143 610-674 (683)
162 COG0317 SpoT Guanosine polypho 93.8 0.41 8.9E-06 49.2 9.8 76 61-143 612-691 (701)
163 PF13840 ACT_7: ACT domain ; P 93.6 0.25 5.4E-06 35.1 5.8 47 70-121 3-53 (65)
164 cd04931 ACT_PAH ACT domain of 93.4 1.5 3.2E-05 33.4 10.1 73 68-145 9-82 (90)
165 PRK10622 pheA bifunctional cho 93.3 0.48 1E-05 45.5 8.9 54 188-241 297-351 (386)
166 COG1707 ACT domain-containing 93.2 0.29 6.3E-06 41.8 6.4 45 75-119 4-48 (218)
167 PRK08210 aspartate kinase I; R 93.2 5.2 0.00011 38.3 15.9 100 71-218 269-372 (403)
168 PLN02551 aspartokinase 93.0 5.3 0.00011 40.0 16.1 123 70-234 363-491 (521)
169 PRK09181 aspartate kinase; Val 92.9 7.8 0.00017 38.3 16.9 105 71-220 327-436 (475)
170 COG4747 ACT domain-containing 92.8 0.65 1.4E-05 37.5 7.5 40 75-114 71-110 (142)
171 cd04885 ACT_ThrD-I Tandem C-te 92.8 0.4 8.6E-06 34.1 5.8 59 192-255 2-61 (68)
172 PRK08818 prephenate dehydrogen 92.8 0.31 6.7E-06 46.6 6.7 51 187-238 294-345 (370)
173 COG0317 SpoT Guanosine polypho 92.6 0.73 1.6E-05 47.4 9.5 41 188-228 627-667 (701)
174 PRK06382 threonine dehydratase 92.4 0.36 7.9E-06 46.4 6.7 35 188-222 330-364 (406)
175 PRK09436 thrA bifunctional asp 92.1 11 0.00024 39.8 17.8 114 70-220 312-431 (819)
176 cd04906 ACT_ThrD-I_1 First of 92.0 1.5 3.3E-05 32.6 8.4 61 75-143 3-64 (85)
177 COG1707 ACT domain-containing 91.7 0.55 1.2E-05 40.1 6.2 45 190-234 4-50 (218)
178 cd04871 ACT_PSP_2 ACT domains 91.5 0.13 2.8E-06 38.6 2.0 32 75-106 1-33 (84)
179 cd04871 ACT_PSP_2 ACT domains 91.2 0.16 3.4E-06 38.1 2.3 31 191-221 2-33 (84)
180 PRK13581 D-3-phosphoglycerate 91.2 0.57 1.2E-05 46.7 6.9 62 187-251 451-514 (526)
181 TIGR00657 asp_kinases aspartat 91.2 9.5 0.00021 37.0 15.2 109 71-220 300-413 (441)
182 TIGR01327 PGDH D-3-phosphoglyc 91.0 0.46 1E-05 47.4 5.9 62 187-251 450-513 (525)
183 TIGR00719 sda_beta L-serine de 90.8 1.8 3.9E-05 37.9 8.9 43 70-112 145-187 (208)
184 PRK09034 aspartate kinase; Rev 90.7 18 0.00039 35.4 17.6 113 70-223 305-423 (454)
185 cd04904 ACT_AAAH ACT domain of 90.3 2.7 5.9E-05 30.4 8.1 46 76-121 3-49 (74)
186 PRK06545 prephenate dehydrogen 90.3 0.62 1.3E-05 44.0 5.9 49 186-234 288-336 (359)
187 PRK07431 aspartate kinase; Pro 90.2 22 0.00048 35.8 20.7 137 70-257 436-580 (587)
188 PRK11898 prephenate dehydratas 89.8 1.9 4.1E-05 39.6 8.5 67 188-255 196-264 (283)
189 PRK08198 threonine dehydratase 89.6 3.7 8E-05 39.3 10.7 67 71-143 325-395 (404)
190 PF13840 ACT_7: ACT domain ; P 89.5 0.71 1.5E-05 32.7 4.3 42 188-234 6-51 (65)
191 PLN02317 arogenate dehydratase 89.3 2.6 5.6E-05 40.5 9.3 67 188-255 283-364 (382)
192 TIGR01268 Phe4hydrox_tetr phen 89.1 2.4 5.2E-05 41.4 8.9 53 188-240 16-69 (436)
193 PRK06382 threonine dehydratase 88.9 3.1 6.6E-05 40.0 9.6 66 71-143 328-398 (406)
194 cd04929 ACT_TPH ACT domain of 88.7 4.5 9.7E-05 29.5 8.3 46 76-121 3-49 (74)
195 TIGR01270 Trp_5_monoox tryptop 88.6 2.3 5E-05 41.8 8.5 54 187-240 30-85 (464)
196 COG0527 LysC Aspartokinases [A 88.5 27 0.00058 34.4 16.9 119 70-234 304-428 (447)
197 PRK06349 homoserine dehydrogen 88.3 2.4 5.2E-05 41.1 8.5 50 187-236 347-396 (426)
198 COG0440 IlvH Acetolactate synt 88.2 1.8 4E-05 36.7 6.6 67 189-258 5-71 (163)
199 PRK11790 D-3-phosphoglycerate 88.1 1.3 2.9E-05 42.7 6.5 48 72-119 337-384 (409)
200 PRK14646 hypothetical protein; 87.3 11 0.00024 31.6 10.8 60 85-146 8-67 (155)
201 PRK06545 prephenate dehydrogen 86.7 3 6.6E-05 39.3 8.0 49 71-119 288-336 (359)
202 PRK07431 aspartate kinase; Pro 86.4 23 0.00051 35.7 14.6 123 71-221 346-473 (587)
203 TIGR01127 ilvA_1Cterm threonin 86.2 2.8 6.2E-05 39.7 7.6 35 188-222 305-339 (380)
204 PRK11899 prephenate dehydratas 86.1 15 0.00033 33.7 12.0 52 73-126 194-246 (279)
205 PRK09224 threonine dehydratase 86.0 39 0.00083 33.6 16.8 129 71-222 326-456 (504)
206 cd04906 ACT_ThrD-I_1 First of 86.0 4 8.7E-05 30.3 6.8 61 190-255 3-64 (85)
207 TIGR01127 ilvA_1Cterm threonin 85.7 7.8 0.00017 36.7 10.3 34 74-107 306-339 (380)
208 PRK14634 hypothetical protein; 84.0 15 0.00033 30.7 10.1 61 84-146 7-67 (155)
209 PRK14636 hypothetical protein; 83.8 16 0.00034 31.3 10.3 63 82-146 3-65 (176)
210 PRK10820 DNA-binding transcrip 83.6 1.4 3.1E-05 43.8 4.4 36 190-225 2-37 (520)
211 PRK14640 hypothetical protein; 83.6 17 0.00036 30.4 10.2 58 86-147 8-65 (152)
212 cd04930 ACT_TH ACT domain of t 83.4 10 0.00022 30.2 8.3 49 73-121 41-90 (115)
213 PRK08198 threonine dehydratase 82.8 7.9 0.00017 37.0 9.0 35 188-222 327-361 (404)
214 cd04935 ACT_AKiii-DAPDC_1 ACT 82.8 11 0.00024 27.3 7.8 57 195-255 11-67 (75)
215 PLN02550 threonine dehydratase 82.1 63 0.0014 33.0 16.5 153 72-254 416-571 (591)
216 cd04922 ACT_AKi-HSDH-ThrA_2 AC 82.0 13 0.00029 25.1 8.3 44 190-235 3-49 (66)
217 PRK14647 hypothetical protein; 81.9 21 0.00046 30.0 10.2 58 86-147 10-67 (159)
218 PRK09084 aspartate kinase III; 81.7 51 0.0011 32.2 14.3 105 70-214 303-413 (448)
219 PRK14645 hypothetical protein; 81.5 27 0.00058 29.3 10.6 61 84-146 9-69 (154)
220 PRK00092 ribosome maturation p 81.3 24 0.00052 29.3 10.3 58 86-147 9-66 (154)
221 PRK14639 hypothetical protein; 81.1 19 0.0004 29.7 9.4 54 90-147 3-56 (140)
222 PRK14638 hypothetical protein; 80.7 25 0.00055 29.3 10.2 59 86-147 10-68 (150)
223 PRK08818 prephenate dehydrogen 80.6 4.7 0.0001 38.6 6.5 49 72-121 294-343 (370)
224 COG0440 IlvH Acetolactate synt 80.2 7.3 0.00016 33.1 6.7 65 74-144 5-69 (163)
225 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.1 16 0.00034 24.8 8.5 33 74-106 2-37 (66)
226 cd04932 ACT_AKiii-LysC-EC_1 AC 79.9 20 0.00044 26.0 8.8 56 195-255 11-67 (75)
227 PRK14637 hypothetical protein; 79.5 29 0.00064 28.9 10.2 62 81-146 5-66 (151)
228 PRK13581 D-3-phosphoglycerate 79.2 7.1 0.00015 39.0 7.5 42 71-112 450-491 (526)
229 PRK14630 hypothetical protein; 78.6 33 0.00071 28.3 10.1 61 82-146 6-66 (143)
230 PRK06349 homoserine dehydrogen 77.5 14 0.00029 35.9 8.8 51 72-122 347-397 (426)
231 PRK14633 hypothetical protein; 77.3 38 0.00083 28.1 10.3 56 86-146 6-61 (150)
232 PF05088 Bac_GDH: Bacterial NA 77.3 26 0.00056 39.6 11.6 88 59-147 473-567 (1528)
233 COG0779 Uncharacterized protei 77.1 29 0.00063 29.1 9.5 59 84-146 8-66 (153)
234 KOG2663 Acetolactate synthase, 77.0 6.7 0.00014 35.7 5.9 43 72-114 76-118 (309)
235 PRK14643 hypothetical protein; 76.5 37 0.00079 28.8 10.0 60 85-146 10-71 (164)
236 TIGR01327 PGDH D-3-phosphoglyc 76.2 6.5 0.00014 39.2 6.3 43 71-113 449-491 (525)
237 cd04937 ACT_AKi-DapG-BS_2 ACT 76.1 23 0.00049 24.4 8.3 28 75-102 3-33 (64)
238 COG0077 PheA Prephenate dehydr 75.9 37 0.0008 31.3 10.6 65 72-143 193-258 (279)
239 PRK14631 hypothetical protein; 75.8 43 0.00093 28.6 10.4 61 85-146 9-84 (174)
240 cd04913 ACT_AKii-LysC-BS-like_ 75.4 8.4 0.00018 26.5 5.1 27 195-221 9-35 (75)
241 PRK14632 hypothetical protein; 75.3 39 0.00085 28.8 10.0 57 86-147 10-66 (172)
242 cd04937 ACT_AKi-DapG-BS_2 ACT 75.0 25 0.00053 24.3 8.4 28 190-217 3-33 (64)
243 PRK12483 threonine dehydratase 74.9 97 0.0021 31.1 17.3 139 71-233 343-484 (521)
244 KOG2663 Acetolactate synthase, 74.1 3.9 8.3E-05 37.2 3.6 42 187-228 76-117 (309)
245 cd04934 ACT_AK-Hom3_1 CT domai 74.0 21 0.00046 25.8 7.0 53 197-255 13-65 (73)
246 TIGR02079 THD1 threonine dehyd 74.0 32 0.00069 33.2 10.2 67 71-143 323-390 (409)
247 cd04890 ACT_AK-like_1 ACT doma 73.0 26 0.00056 23.7 7.4 37 196-236 11-47 (62)
248 cd04891 ACT_AK-LysC-DapG-like_ 72.5 14 0.00031 24.1 5.5 41 195-235 8-49 (61)
249 COG2150 Predicted regulator of 71.8 7.6 0.00016 32.9 4.6 34 72-105 94-127 (167)
250 PRK10622 pheA bifunctional cho 71.5 73 0.0016 30.7 11.9 52 73-126 297-349 (386)
251 PRK14646 hypothetical protein; 71.3 47 0.001 27.8 9.4 68 200-267 8-76 (155)
252 COG2150 Predicted regulator of 71.0 7.1 0.00015 33.1 4.3 59 190-250 95-156 (167)
253 cd04868 ACT_AK-like ACT domain 70.6 10 0.00022 24.4 4.4 25 197-221 12-36 (60)
254 PRK09466 metL bifunctional asp 70.5 1.5E+02 0.0033 31.4 15.8 105 71-219 315-425 (810)
255 cd04919 ACT_AK-Hom3_2 ACT doma 70.1 31 0.00068 23.4 8.3 27 197-223 13-39 (66)
256 PRK08526 threonine dehydratase 69.8 36 0.00077 32.9 9.5 67 71-143 324-394 (403)
257 COG4492 PheB ACT domain-contai 68.9 9.5 0.00021 31.4 4.5 65 187-254 71-136 (150)
258 PRK08961 bifunctional aspartat 68.8 87 0.0019 33.3 12.8 105 70-216 319-429 (861)
259 PRK08526 threonine dehydratase 68.4 20 0.00043 34.6 7.4 65 187-255 325-394 (403)
260 PRK14634 hypothetical protein; 68.2 52 0.0011 27.5 9.0 68 200-267 8-76 (155)
261 PF02576 DUF150: Uncharacteris 67.5 37 0.00081 27.6 7.9 53 90-146 2-54 (141)
262 cd04919 ACT_AK-Hom3_2 ACT doma 66.9 37 0.0008 23.0 8.6 35 74-108 2-39 (66)
263 cd04912 ACT_AKiii-LysC-EC-like 66.3 45 0.00097 23.8 7.7 56 196-255 12-67 (75)
264 PRK11898 prephenate dehydratas 65.7 1.1E+02 0.0023 28.1 11.3 52 73-126 196-249 (283)
265 COG3978 Acetolactate synthase 64.4 57 0.0012 24.5 7.4 53 188-241 3-57 (86)
266 cd04924 ACT_AK-Arch_2 ACT doma 63.6 42 0.00091 22.5 8.5 37 197-235 13-49 (66)
267 PRK14645 hypothetical protein; 63.4 73 0.0016 26.6 9.0 69 199-267 9-78 (154)
268 PRK14644 hypothetical protein; 63.4 82 0.0018 25.8 9.2 49 91-146 5-53 (136)
269 PRK08639 threonine dehydratase 63.2 63 0.0014 31.2 9.8 67 71-143 334-401 (420)
270 TIGR01124 ilvA_2Cterm threonin 62.8 67 0.0015 31.9 10.1 129 71-223 323-453 (499)
271 cd04868 ACT_AK-like ACT domain 62.5 15 0.00032 23.7 3.9 32 75-106 2-36 (60)
272 cd04915 ACT_AK-Ectoine_2 ACT d 62.5 47 0.001 23.2 6.7 34 198-234 14-48 (66)
273 cd04911 ACT_AKiii-YclM-BS_1 AC 62.3 27 0.00058 25.8 5.5 62 196-263 12-73 (76)
274 cd04891 ACT_AK-LysC-DapG-like_ 61.5 41 0.0009 21.7 6.5 41 80-120 8-49 (61)
275 cd04918 ACT_AK1-AT_2 ACT domai 60.6 53 0.0012 22.7 7.7 35 197-234 12-47 (65)
276 PRK14636 hypothetical protein; 60.5 77 0.0017 27.1 8.8 69 199-267 5-74 (176)
277 cd04924 ACT_AK-Arch_2 ACT doma 60.2 49 0.0011 22.2 8.5 34 75-108 3-39 (66)
278 PLN02317 arogenate dehydratase 60.2 1.4E+02 0.0031 28.8 11.4 36 74-109 284-319 (382)
279 cd04913 ACT_AKii-LysC-BS-like_ 60.1 51 0.0011 22.3 7.1 27 80-106 9-35 (75)
280 cd04912 ACT_AKiii-LysC-EC-like 59.9 60 0.0013 23.1 8.8 61 75-142 3-66 (75)
281 cd04933 ACT_AK1-AT_1 ACT domai 59.9 48 0.001 24.4 6.5 38 195-236 11-48 (78)
282 cd04921 ACT_AKi-HSDH-ThrA-like 59.7 60 0.0013 22.9 7.4 60 196-261 12-72 (80)
283 cd04892 ACT_AK-like_2 ACT doma 59.5 23 0.0005 23.2 4.5 25 197-221 12-36 (65)
284 TIGR01270 Trp_5_monoox tryptop 59.1 49 0.0011 32.7 8.2 51 71-121 29-81 (464)
285 cd04932 ACT_AKiii-LysC-EC_1 AC 58.1 18 0.00039 26.2 4.0 44 74-121 2-48 (75)
286 PRK06635 aspartate kinase; Rev 57.3 67 0.0015 30.6 8.8 34 71-104 338-374 (404)
287 COG3283 TyrR Transcriptional r 57.0 11 0.00024 36.4 3.2 36 190-225 2-37 (511)
288 PRK00907 hypothetical protein; 56.4 61 0.0013 24.8 6.7 64 74-142 18-83 (92)
289 KOG0456 Aspartate kinase [Amin 56.0 93 0.002 30.4 9.2 121 72-234 392-517 (559)
290 PRK00092 ribosome maturation p 55.9 1.2E+02 0.0025 25.2 9.0 66 201-267 9-74 (154)
291 PRK02047 hypothetical protein; 55.8 69 0.0015 24.3 7.0 65 73-142 16-82 (91)
292 COG3978 Acetolactate synthase 54.6 49 0.0011 24.9 5.7 48 73-120 3-52 (86)
293 TIGR02079 THD1 threonine dehyd 54.5 1E+02 0.0022 29.7 9.6 65 187-255 324-390 (409)
294 PRK14639 hypothetical protein; 54.4 96 0.0021 25.4 8.1 62 205-267 3-64 (140)
295 cd04918 ACT_AK1-AT_2 ACT domai 53.4 72 0.0016 22.0 8.3 45 75-121 3-49 (65)
296 PRK14638 hypothetical protein; 53.1 1.3E+02 0.0029 24.9 9.1 67 201-267 10-76 (150)
297 TIGR01268 Phe4hydrox_tetr phen 52.1 1.1E+02 0.0023 30.2 9.2 52 73-126 16-68 (436)
298 PRK12483 threonine dehydratase 52.0 72 0.0016 32.0 8.3 45 188-234 345-389 (521)
299 PTZ00324 glutamate dehydrogena 51.6 1.1E+02 0.0024 33.2 9.8 67 59-126 215-286 (1002)
300 PRK14637 hypothetical protein; 51.5 1.4E+02 0.0031 24.8 8.9 61 199-260 8-68 (151)
301 COG4492 PheB ACT domain-contai 51.2 42 0.00091 27.7 5.3 45 70-114 69-113 (150)
302 cd04916 ACT_AKiii-YclM-BS_2 AC 51.2 72 0.0016 21.3 8.4 33 191-223 4-39 (66)
303 cd04890 ACT_AK-like_1 ACT doma 50.6 74 0.0016 21.3 7.2 37 81-121 11-47 (62)
304 cd04921 ACT_AKi-HSDH-ThrA-like 50.4 87 0.0019 22.1 8.8 34 74-107 2-38 (80)
305 PRK08841 aspartate kinase; Val 49.9 2.4E+02 0.0053 27.1 14.5 61 187-258 317-377 (392)
306 PRK08639 threonine dehydratase 49.9 71 0.0015 30.8 7.7 65 187-255 335-401 (420)
307 TIGR00656 asp_kin_monofn aspar 49.8 1.1E+02 0.0023 29.2 8.8 34 70-103 334-370 (401)
308 cd04935 ACT_AKiii-DAPDC_1 ACT 49.5 97 0.0021 22.3 9.0 57 80-143 11-67 (75)
309 PRK14640 hypothetical protein; 49.4 1.5E+02 0.0033 24.6 9.0 65 201-267 8-73 (152)
310 PRK00341 hypothetical protein; 49.1 96 0.0021 23.6 6.8 63 74-142 18-82 (91)
311 cd04916 ACT_AKiii-YclM-BS_2 AC 48.1 81 0.0018 21.1 8.5 34 75-108 3-39 (66)
312 PRK08210 aspartate kinase I; R 48.0 1E+02 0.0022 29.4 8.4 33 71-103 337-372 (403)
313 PRK10820 DNA-binding transcrip 45.4 34 0.00074 34.0 4.9 36 75-110 2-37 (520)
314 cd07247 SgaA_N_like N-terminal 43.5 97 0.0021 22.8 6.2 51 71-128 60-110 (114)
315 PRK14641 hypothetical protein; 42.8 2.1E+02 0.0046 24.4 9.6 49 95-147 20-68 (173)
316 cd04914 ACT_AKi-DapG-BS_1 ACT 41.6 28 0.0006 24.5 2.6 35 197-235 11-45 (67)
317 PF02576 DUF150: Uncharacteris 40.6 1.3E+02 0.0028 24.3 6.9 55 205-260 2-56 (141)
318 cd04923 ACT_AK-LysC-DapG-like_ 40.2 1.1E+02 0.0023 20.1 7.8 25 196-220 11-35 (63)
319 TIGR01124 ilvA_2Cterm threonin 39.2 1.6E+02 0.0036 29.2 8.5 62 188-255 325-387 (499)
320 PRK09224 threonine dehydratase 39.0 1.9E+02 0.0042 28.7 9.0 62 188-254 328-390 (504)
321 PRK14635 hypothetical protein; 38.5 2.4E+02 0.0051 23.7 9.1 60 85-147 7-68 (162)
322 cd04936 ACT_AKii-LysC-BS-like_ 37.0 1.2E+02 0.0026 19.8 7.8 25 196-220 11-35 (63)
323 PRK04998 hypothetical protein; 36.3 1.8E+02 0.004 21.7 6.7 65 73-142 15-79 (88)
324 PLN02550 threonine dehydratase 36.2 2.1E+02 0.0045 29.3 8.8 33 188-222 417-449 (591)
325 cd04892 ACT_AK-like_2 ACT doma 36.1 1.2E+02 0.0026 19.5 8.2 32 75-106 2-36 (65)
326 PRK14647 hypothetical protein; 35.3 2.7E+02 0.0057 23.3 9.2 66 201-267 10-75 (159)
327 TIGR00657 asp_kinases aspartat 31.7 3.1E+02 0.0068 26.5 9.0 35 71-105 376-413 (441)
328 cd04920 ACT_AKiii-DAPDC_2 ACT 31.3 1.7E+02 0.0038 20.0 8.0 27 75-101 2-31 (63)
329 PF09383 NIL: NIL domain; Int 31.2 1.9E+02 0.0042 20.4 8.4 60 76-142 7-67 (76)
330 cd07247 SgaA_N_like N-terminal 31.2 2E+02 0.0043 21.1 6.2 49 187-241 61-110 (114)
331 PRK14643 hypothetical protein; 30.2 3.4E+02 0.0073 22.9 9.3 67 201-267 11-80 (164)
332 cd04914 ACT_AKi-DapG-BS_1 ACT 29.4 1E+02 0.0022 21.5 4.0 43 75-121 3-46 (67)
333 cd04933 ACT_AK1-AT_1 ACT domai 29.3 58 0.0012 24.0 2.7 38 80-121 11-48 (78)
334 COG2061 ACT-domain-containing 29.1 67 0.0015 27.2 3.3 35 74-108 6-40 (170)
335 PRK09034 aspartate kinase; Rev 29.1 3.2E+02 0.007 26.7 8.7 38 71-108 383-423 (454)
336 PRK06291 aspartate kinase; Pro 28.8 3.7E+02 0.008 26.3 9.1 49 71-121 396-447 (465)
337 PLN02551 aspartokinase 26.5 4.1E+02 0.0088 26.7 9.0 49 71-121 443-493 (521)
338 COG2902 NAD-specific glutamate 26.2 95 0.0021 34.9 4.6 48 57-104 70-119 (1592)
339 cd04915 ACT_AK-Ectoine_2 ACT d 25.9 2.3E+02 0.005 19.6 8.6 33 74-106 3-37 (66)
340 PRK14632 hypothetical protein; 25.8 4.1E+02 0.0089 22.5 8.8 64 201-267 10-74 (172)
341 PF14226 DIOX_N: non-haem diox 25.8 17 0.00038 27.8 -0.7 50 195-263 10-59 (116)
342 PTZ00324 glutamate dehydrogena 25.5 7.6E+02 0.017 27.1 11.1 46 194-239 239-286 (1002)
343 PRK14633 hypothetical protein; 24.6 4E+02 0.0087 22.0 8.8 58 201-261 6-64 (150)
344 COG3603 Uncharacterized conser 24.5 52 0.0011 26.6 1.8 23 195-217 73-95 (128)
345 PRK14630 hypothetical protein; 23.9 4.1E+02 0.0089 21.8 8.9 62 197-260 6-68 (143)
346 cd07253 Glo_EDI_BRP_like_2 Thi 23.9 2.1E+02 0.0045 21.0 5.2 53 72-128 67-120 (125)
347 PRK08841 aspartate kinase; Val 23.6 4.5E+02 0.0098 25.2 8.4 33 71-103 316-348 (392)
348 PRK14631 hypothetical protein; 23.5 4.6E+02 0.01 22.3 9.4 61 201-261 10-87 (174)
349 PRK14635 hypothetical protein; 23.2 4.5E+02 0.0097 22.0 8.2 65 201-267 8-75 (162)
350 PF05088 Bac_GDH: Bacterial NA 22.6 1.2E+03 0.027 26.9 21.0 205 57-266 325-573 (1528)
351 cd07245 Glo_EDI_BRP_like_9 Thi 22.4 2.1E+02 0.0046 20.2 4.8 47 188-241 65-112 (114)
352 PRK00907 hypothetical protein; 22.3 3.2E+02 0.007 20.8 5.7 35 188-222 17-51 (92)
353 PRK15385 magnesium transport p 22.1 5.7E+02 0.012 22.8 8.9 38 188-225 142-181 (225)
354 cd04917 ACT_AKiii-LysC-EC_2 AC 21.6 2.6E+02 0.0057 18.8 8.3 24 74-97 2-28 (64)
355 PRK09181 aspartate kinase; Val 20.3 6E+02 0.013 25.2 8.7 36 71-106 400-437 (475)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=1.9e-32 Score=282.72 Aligned_cols=191 Identities=24% Similarity=0.286 Sum_probs=168.6
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 137 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl 137 (267)
.+|.|.++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|.++|. +|+|+|++. +|.++ +++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999855 699999997 88888 46789999
Q ss_pred HHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccE
Q 024465 138 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDV 216 (267)
Q Consensus 138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I 216 (267)
+++|.++|.+.... .. . .+ +.+++.+.+..+++|.|+++.+. +|+|+|.|.||||||++|+++|.++|++|
T Consensus 765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I 836 (884)
T PRK05007 765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL 836 (884)
T ss_pred HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence 99999999763211 11 1 11 12345667889999999998865 99999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 024465 217 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 259 (267)
Q Consensus 217 ~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~ 259 (267)
++|+|+|.|++|+|+|||++ +|.|++++.++.|+++|..+|+.
T Consensus 837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 99999977889999999999965
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=6.4e-32 Score=278.03 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=165.1
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERI 137 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl 137 (267)
.+|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+ .++|+|+|++. +|.++. ++++++|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence 46889999999999999999999999999999999999999999999999655 55799999997 898884 6789999
Q ss_pred HHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccE
Q 024465 138 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDV 216 (267)
Q Consensus 138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I 216 (267)
++.|.++|.+... ... .. +.+++.+.+..+++|.|+++.+. +|+|+|.+.||||||++|+++|.++|++|
T Consensus 741 ~~~L~~aL~~~~~-~~~-------~~-~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i 811 (854)
T PRK01759 741 EQALTKALNTNKL-KKL-------NL-EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL 811 (854)
T ss_pred HHHHHHHHcCCCC-cch-------hc-cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 9999999976321 010 01 12235567888999999998875 99999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 024465 217 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 258 (267)
Q Consensus 217 ~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~ 258 (267)
+.|+|+|.|++|+|+|||++ +|+|++++.++.|+++|.++|.
T Consensus 812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~ 854 (854)
T PRK01759 812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS 854 (854)
T ss_pred EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999 9999998866999999998874
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=261.79 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=169.0
Q ss_pred CCCCEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCC-ChH
Q 024465 58 IPMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPD 132 (267)
Q Consensus 58 ~~~p~V~i~~~~~---~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~-~~~ 132 (267)
...|.|.+....+ .++++|+|+|+||||||++||++|+.+|+||++|+|+|+++|+ +|+|+|++. +|.++. +++
T Consensus 686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~ 764 (895)
T PRK00275 686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPA 764 (895)
T ss_pred CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHH
Confidence 3457788877665 5999999999999999999999999999999999999998876 699999997 888753 457
Q ss_pred HHHHHHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHh
Q 024465 133 LLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIAD 211 (267)
Q Consensus 133 ~~erl~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~ 211 (267)
++++|++.|.++|.+.. .....+++ +.+++...++.++.|.+.++.+ .+|.|+|++.||||||++|+++|++
T Consensus 765 r~~~i~~~L~~~L~~~~-~~~~~~~~------~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~ 837 (895)
T PRK00275 765 RIEQIREGLTEALRNPD-DYPTIIQR------RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLE 837 (895)
T ss_pred HHHHHHHHHHHHHcCCC-ccchhhhh------hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHH
Confidence 89999999999997632 21223321 1234556678888998888775 4999999999999999999999999
Q ss_pred CCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCccC
Q 024465 212 VNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDID 265 (267)
Q Consensus 212 ~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~~~~~~ 265 (267)
+|++|..|+|.|.|+++.|+|||++ +|.|++++ .++.|+++|..+|..++....
T Consensus 838 ~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~ 893 (895)
T PRK00275 838 FDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKDT 893 (895)
T ss_pred CCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999 99999886 789999999999977765443
No 4
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=2.5e-29 Score=259.26 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=166.5
Q ss_pred CCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChHHHHH
Q 024465 58 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLER 136 (267)
Q Consensus 58 ~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~~~er 136 (267)
.+.|.|.+.+....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++.+++++++
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~ 731 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQE 731 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHH
Confidence 4568899988777899999999999999999999999999999999999966554 5799999997 8888877778999
Q ss_pred HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465 137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD 215 (267)
Q Consensus 137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~ 215 (267)
|++.|.++|.+.. .....+ ..+.+.+++...+.++++|.|++..+. +|+|+|.|.||||||++|+++|+++|++
T Consensus 732 i~~~L~~~L~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~ 806 (850)
T TIGR01693 732 LLQGLVDVLAGLA-KDPDTI----SARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLS 806 (850)
T ss_pred HHHHHHHHHcCCC-cccccc----ccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCe
Confidence 9999999997632 101111 111112345667889999999998875 9999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465 216 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l 257 (267)
|++|+|+|.|+++.|+|||++ .|.|++++.++.|+++|..+|
T Consensus 807 i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 807 IQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998 999999888899999999876
No 5
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=243.79 Aligned_cols=194 Identities=27% Similarity=0.316 Sum_probs=171.3
Q ss_pred CCCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHH
Q 024465 57 YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLE 135 (267)
Q Consensus 57 ~~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~e 135 (267)
+..+|.|.+......+.++|+|+++|+|.||+.+|.++...|+||++|+|+|+.+|+ .|+|+|.++ +|.++. +++..
T Consensus 668 ~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~ 745 (867)
T COG2844 668 DLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRA 745 (867)
T ss_pred hccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHH
Confidence 356799998877777999999999999999999999999999999999999999985 799999997 898886 67888
Q ss_pred HHHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCc
Q 024465 136 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNV 214 (267)
Q Consensus 136 rl~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl 214 (267)
.++..|.+++..+... + +.+.+.+++..+|+++|+|.|.+..++ .++||+.+.||||||++|+++|++.|+
T Consensus 746 ~~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l 817 (867)
T COG2844 746 ALRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGL 817 (867)
T ss_pred HHHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccc
Confidence 8888888878664332 1 123356677889999999999998876 999999999999999999999999999
Q ss_pred cEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 024465 215 DVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 260 (267)
Q Consensus 215 ~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~ 260 (267)
+|.+|+|+|.|++|+|+|||++ .|.+++++.++.+.+.|...+...
T Consensus 818 ~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 818 SLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred ceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999 999998888899999998887643
No 6
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=6e-28 Score=250.91 Aligned_cols=199 Identities=21% Similarity=0.299 Sum_probs=169.7
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI 137 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl 137 (267)
.++.|.+.+..+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence 5688889998889999999999999999999999999999999999999987766 699999986 88877778899999
Q ss_pred HHHHHHHhhccCCCchhHhhhccccCccCC-CcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465 138 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD 215 (267)
Q Consensus 138 ~~~L~~~L~~~~~~~~~~la~~~~~~~~~~-~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~ 215 (267)
++.|..++.+. ......+. .+ ..+ .+...+..++.|.|+++.+. ++.|+|.+.||||||++|+++|+++|++
T Consensus 797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~ 870 (931)
T PRK05092 797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN 870 (931)
T ss_pred HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence 99999988652 22111111 11 112 13467788899999888765 8999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 024465 216 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI 264 (267)
Q Consensus 216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~~~~~ 264 (267)
|.+|+|.|.|+++.|+|||++ +|.++.++ .++.|+++|..+|..+..++
T Consensus 871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~ 921 (931)
T PRK05092 871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921 (931)
T ss_pred EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999999 99999887 78899999999997666554
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=8.7e-28 Score=247.35 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=160.5
Q ss_pred CCCEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHH
Q 024465 59 PMPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER 136 (267)
Q Consensus 59 ~~p~V~i~~-~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~er 136 (267)
..|.|.+.. ....++++|+|+++||||||++||++|+.+|+||++|+|+|+.+|. +|+|+|.++ +|.. ++++++
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~ 750 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQR 750 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHH
Confidence 356666654 7778999999999999999999999999999999999999988776 699999986 6654 367888
Q ss_pred HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465 137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD 215 (267)
Q Consensus 137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~~gl~ 215 (267)
|++.|.++|.+. ..... +. ++ +.+++...++++++|.++++.+ .+|.|+|.+.||||||++|+++|+++|++
T Consensus 751 i~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~ 823 (869)
T PRK04374 751 LAAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLR 823 (869)
T ss_pred HHHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCe
Confidence 999999999763 22111 21 11 2245667888999999988775 58999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 024465 216 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 258 (267)
Q Consensus 216 I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~ 258 (267)
|..|+|+|.|+++.|+|||++ +|.+++++.++.|+++|+++|+
T Consensus 824 I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 824 VHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred EEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999999 8999988866999999999985
No 8
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=8.3e-27 Score=238.13 Aligned_cols=186 Identities=21% Similarity=0.207 Sum_probs=154.7
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
++|.|.+.... .++++|+|+|+||||||++||++|+.+|+||++|+|+|..+.++|+|+|.+. +|.+. .+++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~ 659 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR 659 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence 56899998888 8999999999999999999999999999999999999955666899999986 77643 368899
Q ss_pred HHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCC-eEEEEEEeCCcccHHHHHHHHHHhCCccEE
Q 024465 139 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVE 217 (267)
Q Consensus 139 ~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~-~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~ 217 (267)
+.|+++|.+. ......++.. .+...+++...+..++.|.+++..+. +++|+|.+.||||||++|+++|+++|+||.
T Consensus 660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~ 736 (774)
T PRK03381 660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR 736 (774)
T ss_pred HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence 9999988762 2211222210 00001244567788888888877654 899999999999999999999999999999
Q ss_pred EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 024465 218 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 218 ~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~ 254 (267)
+|+|.|.|+++.|+|||++ +|.+++++ ++.|+++|+
T Consensus 737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 9999999999999999999 99999988 889998886
No 9
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.3e-26 Score=238.81 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=158.8
Q ss_pred CCCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHH
Q 024465 58 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER 136 (267)
Q Consensus 58 ~~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~er 136 (267)
.+.|.|.+......++++|+|+++||||||++||++|+.+|+||++|+|+|+.+|. +|+|+|.++ +|. ..+++++++
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~ 740 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINL 740 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHH
Confidence 34678888888889999999999999999999999999999999999999988877 699999986 666 455789999
Q ss_pred HHHHHHHHhhccCCCchhHhhhccccCccCCCcccccccceeEEeccCCC-CeEEEEEEeCCcccHHHHHHHHHHhCCcc
Q 024465 137 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD 215 (267)
Q Consensus 137 l~~~L~~~L~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s-~~t~l~i~~~DRpGLL~~Itr~l~~~gl~ 215 (267)
|++.|.++|.+.. .....+ .+ +.+++.+.|..++.|.+.+..+ ++|.|+|.+.||||||++|+++|+++|++
T Consensus 741 i~~~l~~~l~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~ 813 (856)
T PRK03059 741 VEHELAERLAEQA-PLPEPS-----KG-RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVS 813 (856)
T ss_pred HHHHHHHHHcCCC-Ccchhh-----cc-cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCe
Confidence 9999999997632 111111 11 2245566788888888877664 59999999999999999999999999999
Q ss_pred EEEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 024465 216 VESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR 258 (267)
Q Consensus 216 I~~a~i~T~g~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~~~l~ 258 (267)
|..|+|.|.|+++.|+|||++ .++.++ .++.|+++|..+|+
T Consensus 814 I~~AkI~T~~~~v~DvF~V~~--~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 814 VHTAKINTLGERVEDTFLIDG--SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred EEEEEEeecCCEEEEEEEEcC--CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999943 445454 78999999998875
No 10
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.7e-20 Score=138.82 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=69.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR 259 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~ 259 (267)
+|+|+|.|.||||||++|+++|.++|++|.+|+|+|+|++|.|+|||++ +|.|++++ .++.|+++|.++|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 99999988 789999999999875
No 11
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=9.5e-20 Score=133.85 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=64.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY 255 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~ 255 (267)
+|+|+|.+.||||||++|+++|+++|++|++|+|+|.|++++|+|||++ +|+|+.++ .++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999999999999999999999 99999876 78899988753
No 12
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2.8e-19 Score=132.33 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=70.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
||+|+|.|+||||||++|+++|+++|++|++|+|.|.|+.+.|+|||++. +|.++.+++++++|+++|.++|+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999998 99999999999999999998875
No 13
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2e-19 Score=133.12 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=67.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE--ecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP 260 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~--T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~ 260 (267)
|+|+|.|.||||||++|+++|+++|++|++|+|+ |.|++++|+||| + +|+|++++ .++.|+++|.++|..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999999 999999999999 6 89999887 7899999999999887
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=3.6e-16 Score=114.91 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=64.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+|+|.|.++||||||++|+.+|.++|++|+.|+|.|.|+.+.|+|||++. +|.++.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999997 9999988888888888853
No 15
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=5.2e-15 Score=109.54 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~--T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
|++.|.|+||||||++|+.+|.++|++|..|+|. |.|+.+.|.||| +. +|.++.++++++.|++.|.++|+
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 54 78889888999999999988775
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=6.6e-15 Score=108.07 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=63.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
+++|.|+++||||||++++++|+.+|+||.+|+|+|.+++ +.|+|+|++. +|.++.++++++++++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999999999654 5799999986 8888777889999999987643
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=8.1e-15 Score=108.09 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=66.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCC-CCCCCChHHHHHHHHHHHHHhh
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~-g~~l~~~~~~erl~~~L~~~L~ 146 (267)
|+|+|+++||||||++|+++|+++|+||++|+|+|.++.+.|+|+|++. + |.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999998888999999986 6 7778788899999999988764
No 18
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.61 E-value=1.4e-14 Score=125.41 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=102.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 150 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~ 150 (267)
..+.+|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|. +.+ ..+++|+..|...-.. .
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~--~ 75 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE--L 75 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--c
Confidence 47789999999999999999999999999999999999999888777773 332 4667777776652211 1
Q ss_pred CchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC--ee
Q 024465 151 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VA 228 (267)
Q Consensus 151 ~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~--~a 228 (267)
++...+ + +...+ .....+..+.+++.+.|||||+++||++|+++|+||.+.+..|++. ..
T Consensus 76 ~L~i~v-----~--~~~~~-----------~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~ 137 (190)
T PRK11589 76 DLLIVM-----K--RTTAR-----------PRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGER 137 (190)
T ss_pred CeEEEE-----E--ecccc-----------ccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCC
Confidence 111000 0 00000 0011122589999999999999999999999999999999999985 56
Q ss_pred eeEEEEEe
Q 024465 229 KDKFHVSY 236 (267)
Q Consensus 229 ~d~F~v~d 236 (267)
.+.|.+.-
T Consensus 138 ~~lf~~~~ 145 (190)
T PRK11589 138 PAQLHIQI 145 (190)
T ss_pred cccEEEEE
Confidence 77777763
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=7.8e-15 Score=108.19 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=65.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR 258 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~-G~~l~~~-~~~~L~~~L~~~l~ 258 (267)
|+|+|.+.||||||++|+++|+++|+||..|++.|.|+.+.|+|+|++ + |.++.++ .++.|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999998 6 8888776 78999999998875
No 20
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=1.1e-14 Score=108.17 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=64.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 261 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T-~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~ 261 (267)
.++|.+.||||||++|+++|+++|++|.+|+|.| .++++.|+|||++ .|...+++.++.|+++|.++|++.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchhc
Confidence 6899999999999999999999999999999986 8999999999998 6663344488999999999998754
No 21
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.7e-14 Score=104.80 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=62.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL 257 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l 257 (267)
+.|+|++.||||||++|+++|+.+|+||..|+|.|. ++++.|+|||++ .|.++.++ .++.|++.|..+|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999888 599999999998 89988655 7889999998765
No 22
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=9.9e-14 Score=102.93 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=61.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~-~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
++.|+|+||||||++++++|+++|+||.+|+|+|+ ++.+.|+|+|++. +|. ..++++++++++.|.++|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999985 5556799999986 666 4567899999999988774
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.40 E-value=2.4e-12 Score=133.96 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=82.4
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
.+|.|.+.+..+.++|+|+|+++||||||++|+++|..+|+||++|+|+|.++.+.|+|||++. +|.++.+++++++|+
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~ 878 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQ 878 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999998888999999997 899988888999999
Q ss_pred HHHHHHhhc
Q 024465 139 LTIINNLLK 147 (267)
Q Consensus 139 ~~L~~~L~~ 147 (267)
+.|.++|.+
T Consensus 879 ~~L~~~L~~ 887 (895)
T PRK00275 879 DAICEQLDA 887 (895)
T ss_pred HHHHHHHhc
Confidence 999998864
No 24
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.38 E-value=2.8e-12 Score=133.36 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=80.4
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
-+|.|.|+++.++.+|+|.|.++||||||++|+++|.++|++|..|+|.|.|+.+.|+|||++. +|.+++ +++++.|+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~ 871 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELR 871 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999997 899887 67889999
Q ss_pred HHHHHHhh
Q 024465 139 LTIINNLL 146 (267)
Q Consensus 139 ~~L~~~L~ 146 (267)
+.|.++|.
T Consensus 872 ~~L~~~l~ 879 (884)
T PRK05007 872 QRLTEALN 879 (884)
T ss_pred HHHHHHHh
Confidence 99888774
No 25
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=2.6e-12 Score=133.18 Aligned_cols=85 Identities=19% Similarity=0.339 Sum_probs=78.4
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
-+|.|.|+++.++++|+|.|.++||||||++|+++|.++|++|+.|+|+|.|+.+.|+|||++. +|.+++++++ +.|+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~ 846 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALK 846 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999997 8999876544 8888
Q ss_pred HHHHHHh
Q 024465 139 LTIINNL 145 (267)
Q Consensus 139 ~~L~~~L 145 (267)
+.|.++|
T Consensus 847 ~~L~~~l 853 (854)
T PRK01759 847 SRLLSNL 853 (854)
T ss_pred HHHHHHh
Confidence 8887765
No 26
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.36 E-value=3.4e-12 Score=107.28 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=110.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 150 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~ 150 (267)
..|.+|++++.||||+...+++...+.||||.++++...|+.+.-+..| .|.| +...+|+..|.. +.+ +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li----sgs~----dav~~le~~l~~-l~~-~~ 72 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI----SGSW----DAVTLLEATLPL-LGA-EL 72 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE----eeCH----HHHHHHHHHhhc-ccc-cC
Confidence 4689999999999999999999999999999999999999998744444 4654 567778887654 222 11
Q ss_pred CchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--Cee
Q 024465 151 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA 228 (267)
Q Consensus 151 ~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a 228 (267)
+....+ .+ ..++ ........+.++|.+.||||++.++|+.|.++|++|++....|+. +..
T Consensus 73 ~L~v~m-----------~r-----t~~~--~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~ 134 (176)
T COG2716 73 DLLVVM-----------KR-----TGAH--PTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS 134 (176)
T ss_pred CeEEEE-----------ee-----cCCC--ccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence 111000 00 0000 011223478999999999999999999999999999999998875 446
Q ss_pred eeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465 229 KDKFHVSY-GGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 229 ~d~F~v~d-~G~~l~~~~~~~L~~~L~~ 255 (267)
...|++.- -+-|.+-. ...|++++.+
T Consensus 135 ~~lfha~it~~lPa~~~-i~~l~~~f~a 161 (176)
T COG2716 135 APLFHAQITARLPANLS-ISALRDAFEA 161 (176)
T ss_pred ccceehhhhccCCCcCc-HHHHHHHHHH
Confidence 67888864 55565543 2344444433
No 27
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=6.9e-12 Score=91.14 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 126 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~ 126 (267)
.+|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|.+. +|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc
Confidence 5899999999999999999999999999999999998877 699999986 664
No 28
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.9e-11 Score=88.00 Aligned_cols=69 Identities=32% Similarity=0.528 Sum_probs=62.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l 257 (267)
|.|.|.+.||||+|++|+++|+++|++|.++++.|.++.+.++|++++ .|.+++.+..+.|+++|..+|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999999889999999998 888866668889999988764
No 29
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=128.01 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
-+|.|.+.+..+.++|+|+|.++||||||++|+++|+++|+||+.|+|+|.++.+.|+|||++. +|.++.++++ +.|+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~ 859 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALR 859 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHH
Confidence 3689999999999999999999999999999999999999999999999998888999999997 8888766554 8899
Q ss_pred HHHHHHhh
Q 024465 139 LTIINNLL 146 (267)
Q Consensus 139 ~~L~~~L~ 146 (267)
+.|.++|.
T Consensus 860 ~~L~~~l~ 867 (869)
T PRK04374 860 DALCACLD 867 (869)
T ss_pred HHHHHHhc
Confidence 99887763
No 30
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.9e-11 Score=89.48 Aligned_cols=66 Identities=30% Similarity=0.581 Sum_probs=58.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI 141 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L 141 (267)
+.|+|.++||||+|++|+++|+++|+||.+|.+++.++...++|+|.+. +|.++ ++++++++++.|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHh
Confidence 6899999999999999999999999999999999987777899999986 77776 667888777774
No 31
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.4e-11 Score=89.00 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=57.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL 253 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L 253 (267)
++.+.|.++||||+|++|+++|+++|+||.+|.+.|.++.+.++|+|.+ +|.+++.+.++.|+++|
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999889999999998 88888444666666655
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.28 E-value=3.2e-11 Score=126.28 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=82.8
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
.+|.|.|++..+.++++|.|.++||||||++|+++|.++|+||.+|+|.|.++.+.|+|+|++. +|.++.+++++++|+
T Consensus 829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~ 907 (931)
T PRK05092 829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIR 907 (931)
T ss_pred CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999998888999999997 899998888899999
Q ss_pred HHHHHHhhc
Q 024465 139 LTIINNLLK 147 (267)
Q Consensus 139 ~~L~~~L~~ 147 (267)
+.|.++|.+
T Consensus 908 ~~L~~~L~~ 916 (931)
T PRK05092 908 RALLAALAE 916 (931)
T ss_pred HHHHHHhcC
Confidence 999998865
No 33
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=6.7e-11 Score=85.08 Aligned_cols=69 Identities=29% Similarity=0.494 Sum_probs=61.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 144 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~ 144 (267)
|.|.|.++||||+|++++++|.++|++|.++++.+.++...+.|++... +|.+ .+.+++++|+++|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999998877899999986 7777 4567899999997654
No 34
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.25 E-value=1.2e-10 Score=118.04 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=109.0
Q ss_pred EEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCc
Q 024465 74 TIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES 152 (267)
Q Consensus 74 t~V~V~~-~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~ 152 (267)
-.|+|.. +|++|+|.+++++|+.++++|++|++.+ ++.+..+|.|+.. .|.+.+ + .++++.+..++.+.-+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~- 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRAN-GPQDFD-P---QEFLQAYKSGVYSELPD- 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecC-CCCCCC-h---HHHHHHHHHhhcCCCCc-
Confidence 4677777 9999999999999999999999999999 5666789999986 777653 2 56667766666542111
Q ss_pred hhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEE
Q 024465 153 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 232 (267)
Q Consensus 153 ~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F 232 (267)
. .+.++.+.+. ++++||.+.||+|+|+.|+++|. +|..|+++|.|..+.|+|
T Consensus 620 ~-------------------~~~~~~~~~~-----~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~ 671 (693)
T PRK00227 620 P-------------------APGITATFWH-----GNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQA 671 (693)
T ss_pred c-------------------cCCCCceEee-----CcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEE
Confidence 0 1223333332 38999999999999999999999 899999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHHc
Q 024465 233 HVSYGGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 233 ~v~d~G~~l~~~~~~~L~~~L~~~l 257 (267)
|+.. ...+..+...+..+|
T Consensus 672 ~~~~------~~~r~~~~~~~~~~~ 690 (693)
T PRK00227 672 ALKP------GFDRATVERDVTRVL 690 (693)
T ss_pred EecC------cccHHHHHHHHHHHH
Confidence 9962 112455566665554
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.24 E-value=5e-11 Score=122.55 Aligned_cols=80 Identities=28% Similarity=0.389 Sum_probs=71.7
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
.+|.|.+.+..+.++++|+|+++||||||++|+++|+++|+||++|+|+|.++.+.|+|||++. +|.++.++ ++.|+
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~ 769 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVE 769 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHH
Confidence 4678899999999999999999999999999999999999999999999998899999999997 89988653 56666
Q ss_pred HHH
Q 024465 139 LTI 141 (267)
Q Consensus 139 ~~L 141 (267)
+.|
T Consensus 770 ~~L 772 (774)
T PRK03381 770 QAV 772 (774)
T ss_pred HHh
Confidence 654
No 36
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.22 E-value=9e-11 Score=121.82 Aligned_cols=83 Identities=23% Similarity=0.335 Sum_probs=74.2
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
.+|.|.+.+..+.++|+|.|+++||||||++|+++|+.+|+||+.|+|+|.++.+.|+|||.. .+..+++++++|+
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~ 847 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLE 847 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHH
Confidence 457899999889999999999999999999999999999999999999999888899999954 2245678899999
Q ss_pred HHHHHHh
Q 024465 139 LTIINNL 145 (267)
Q Consensus 139 ~~L~~~L 145 (267)
+.|.++|
T Consensus 848 ~~L~~~L 854 (856)
T PRK03059 848 TELLDAL 854 (856)
T ss_pred HHHHHHh
Confidence 9988766
No 37
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.18 E-value=1.5e-10 Score=120.23 Aligned_cols=85 Identities=27% Similarity=0.399 Sum_probs=78.5
Q ss_pred CCCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHH
Q 024465 59 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR 138 (267)
Q Consensus 59 ~~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~ 138 (267)
.+|.|.|++..++++|+|.|.|.||||||++|+++|.++|+||.+|+|.|.++...|.|+|++. .|.++.+ ++++.|+
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~ 842 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLL 842 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999888999999987 8888876 7888899
Q ss_pred HHHHHHh
Q 024465 139 LTIINNL 145 (267)
Q Consensus 139 ~~L~~~L 145 (267)
+.|.++|
T Consensus 843 ~~L~~~l 849 (850)
T TIGR01693 843 EVLAASV 849 (850)
T ss_pred HHHHHHh
Confidence 8887755
No 38
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9e-10 Score=111.22 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHH
Q 024465 60 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 139 (267)
Q Consensus 60 ~p~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~ 139 (267)
+|.|.|.+...+.+++++|.+.||||||++++++|.+++++|+.|+|+|.|+.+.|+|+|++. .|.+++ ++..+.+.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~-~~~~q~l~~ 855 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALN-AELRQSLLQ 855 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCC-HHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999998 898884 455555666
Q ss_pred HHHHHh
Q 024465 140 TIINNL 145 (267)
Q Consensus 140 ~L~~~L 145 (267)
.|.+++
T Consensus 856 ~ll~al 861 (867)
T COG2844 856 RLLEAL 861 (867)
T ss_pred HHHHHh
Confidence 655444
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.03 E-value=3.5e-09 Score=75.49 Aligned_cols=69 Identities=32% Similarity=0.498 Sum_probs=60.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l 257 (267)
+.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...+.|++.+ +|.+.+.+.++.|+++|...+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 367899999999999999999999999999999998889999999987 666665557788999887653
No 40
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.02 E-value=4.1e-09 Score=75.15 Aligned_cols=69 Identities=30% Similarity=0.525 Sum_probs=59.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 144 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~ 144 (267)
+.|.|.++|+||+|++++++|+++|++|.++.+.+.++...+.|++... ++.. .+++++++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999999988866799999886 6555 4567889999887653
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.94 E-value=1.1e-08 Score=74.45 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=52.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l 257 (267)
..|.|.++|||||+++|+.+|..+|+||..|+|.|. .+.+.|+|+|.+ +|.- -..|.++|+.+|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 467899999999999999999999999999999654 688999999998 6654 134455555544
No 42
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.63 E-value=4.9e-07 Score=66.72 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
+.+|+|.|+||||+++.++.+|+++|+||.+.+..+.++.+.-.+.|.-+ ++..++|+..|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999877777542 357788888887743
No 43
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.54 E-value=1.3e-06 Score=61.40 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe--eEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV--KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~--~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+.|.|.++||||+|++++++|+++|+||.++.+.+.+++ ....+.+.+ ....+++.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 478999999999999999999999999999999999884 332233322 2455666666654
No 44
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.50 E-value=1.2e-06 Score=64.61 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=51.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 256 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~ 256 (267)
..+|.+.++||||+++.|+++|+++|+||...+.++.|++..-.+.|+-. +...+.|+++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998888888544 33556777777665
No 45
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.43 E-value=5.6e-07 Score=63.21 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=36.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 227 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~ 227 (267)
|.|.+.++||||+|++|+++|+++|+||..+...+.++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578899999999999999999999999999999998875
No 46
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.42 E-value=2.2e-06 Score=63.42 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.+|++.|+||||+.++++..|+++|+||.+.+.+..++.+.-...+.. .+ ...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~----~~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG----SW----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe----cc----ccHHHHHHHHHH
Confidence 689999999999999999999999999999999998887754444432 11 124566666555
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=4.7e-06 Score=61.12 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=50.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
+|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+. ..+.|++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence 479999999999999999999999999999988888777666777643 221 2466777766633
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=3.2e-06 Score=62.01 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=40.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
++++.++||||++++||++|+++|+||...+..+.++.-.-.|.+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 3689999999999999999999999999999999887766666664
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=3.8e-06 Score=59.57 Aligned_cols=66 Identities=14% Similarity=0.316 Sum_probs=56.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
++|+|.|+|+.||-.|+|+++.+.|++|..+.+.|+|.+.+-.|+|... ...+ +-+|..|+++|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999888999864 2222 3578888888765
No 50
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=3e-05 Score=58.60 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=39.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
.+++.+.++||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v 49 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence 57899999999999999999999999999999988876544433333
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=1.4e-05 Score=58.25 Aligned_cols=44 Identities=16% Similarity=0.371 Sum_probs=36.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
+|.+.|+||||++++||++|+++|+||...+..+.... ..|++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~ 44 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMR 44 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEE
Confidence 37899999999999999999999999999998874322 347775
No 52
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.02 E-value=4.7e-05 Score=56.27 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=36.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 228 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a 228 (267)
++|.+.|+||||+++.|+++|+++|+||...+..+.+++-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 5788999999999999999999999999999998866654
No 53
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=2.6e-05 Score=58.86 Aligned_cols=64 Identities=8% Similarity=0.109 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ . .. ...+.|++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~----~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SN----LDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CC----CCHHHHHHHHHH
Confidence 4789999999999999999999999999999999977666555555432 1 01 124566776665
No 54
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.00 E-value=2.8e-05 Score=57.21 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=38.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe--eeeEEEEE
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS 235 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~--a~d~F~v~ 235 (267)
|.+.|+||||++++|+++|+++|+||.+.+..|.+.. ..+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~ 48 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQ 48 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEE
Confidence 6799999999999999999999999999999998732 34556554
No 55
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=2.6e-05 Score=56.84 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=44.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+|+|.|+||||+++++++.|+++|+||.+.+..+..... .|+++-.-+..+ .+-..+.|++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~~~~~~--~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVEFELEG--FDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence 479999999999999999999999999999998743322 244432101111 00135667777665
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=5e-05 Score=57.30 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=38.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
.+|.+.|+||||++++|+++|+++|+||...+..+.++...-.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v 47 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIV 47 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEE
Confidence 5788999999999999999999999999999998876654434444
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.97 E-value=6.5e-05 Score=55.29 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=34.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
+|+|.|+|+||++++++..|+++|+||.+.+..+.+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 478999999999999999999999999999999987
No 58
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.91 E-value=0.00035 Score=55.92 Aligned_cols=114 Identities=19% Similarity=0.302 Sum_probs=82.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCCCch
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS 153 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~~~~ 153 (267)
-+|+|+..++||-|...+.+|.+.|+||..-+|.-+++.-+-...|.. +++. .+.|+++ +
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~A---~~~Lee~--g------ 63 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDEA---HSVLEEA--G------ 63 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHHH---HHHHHHC--C------
Confidence 378999999999999999999999999999888888876654455533 2221 2232220 0
Q ss_pred hHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe-cCCeeeeEE
Q 024465 154 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKF 232 (267)
Q Consensus 154 ~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T-~g~~a~d~F 232 (267)
|. | ....++-+...|+||-|+.|..+|.+.++|+..+-.-+ ..++|.-.|
T Consensus 64 -------------------F~----V------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~ 114 (142)
T COG4747 64 -------------------FT----V------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV 114 (142)
T ss_pred -------------------cE----E------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence 00 1 12456778899999999999999999999999988644 445566666
Q ss_pred EEEe
Q 024465 233 HVSY 236 (267)
Q Consensus 233 ~v~d 236 (267)
.+.|
T Consensus 115 r~ed 118 (142)
T COG4747 115 RVED 118 (142)
T ss_pred EhhH
Confidence 5533
No 59
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.90 E-value=5.2e-05 Score=55.94 Aligned_cols=63 Identities=29% Similarity=0.386 Sum_probs=46.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
.+.|.|.+.||||+|++|++++++.|++|..+.+.+. ++.+.-.|.+.=.. .+.++.|.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence 5689999999999999999999999999999999885 45666666663221 125566666554
No 60
>PRK00194 hypothetical protein; Validated
Probab=97.87 E-value=8.5e-05 Score=56.08 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=41.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEE
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~ 120 (267)
..+|+|.|+||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 579999999999999999999999999999999988776555444554
No 61
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=7.4e-05 Score=53.09 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 256 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~ 256 (267)
++|.|.|+|+.||=.+++|++.++|++|.++.++|.|.=.--+|.|.....++.- .-..|+++|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999753222211 446677776654
No 62
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.73 E-value=0.0003 Score=51.85 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=45.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-C-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+.+.|.+.||||+|.+|+.++.++|+||.+..+.+.. + .+.-.|.|.- .+.+.+++|...|+
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999974 4 3344455543 24567777777754
No 63
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.62 E-value=0.00018 Score=62.47 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=45.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
++++|.+.++|||||++.|+++|+++|+||...+.+..|+.-.-.+.|+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 5889999999999999999999999999999999999999877777773
No 64
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00061 Score=49.04 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=43.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
|.+.+.||||+|++|+.++++.|+||......+.. +.+.-.|.+.-.+. ++++.+.+.|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~----~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE----EHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH----HHHHHHHHHHhc
Confidence 67899999999999999999999999999887653 45555555522221 145555555543
No 65
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00098 Score=47.95 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=46.4
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+.|.+.||||+|++++.+|++.|.||.+....+...+. .-.|.+.- .+.+.++++.+.|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence 67899999999999999999999999998887765444 33455542 234677777777554
No 66
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.51 E-value=0.0014 Score=48.34 Aligned_cols=66 Identities=12% Similarity=0.289 Sum_probs=48.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
+.+.+...|+||.|++|..+|+++|+||.+......+. ...-.|+|.-+|. .+++..+.+.+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999998776653 4555777765665 334444444455544
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.46 E-value=0.0032 Score=58.08 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=33.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 107 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~ 107 (267)
...+|+|.|+||||+.+.++..|+++|+||.+.+.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 346899999999999999999999999999999997
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.42 E-value=0.0011 Score=61.09 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=39.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe--cCCeeeeEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS 235 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T--~g~~a~d~F~v~ 235 (267)
.+++.+.|+|||||+++||++|+++|+||...+..+ .++ .|.+.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~ 51 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMR 51 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEE
Confidence 678999999999999999999999999999999998 555 36554
No 69
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.42 E-value=0.00021 Score=54.46 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=33.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 227 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~ 227 (267)
..+|.|.+.||||+.+.|+++|+++|+||.+..=+-..+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ 42 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGF 42 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhh
Confidence 5789999999999999999999999999998764333333
No 70
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.41 E-value=0.0074 Score=55.56 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=49.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 144 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T--~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~ 144 (267)
...+|+|.|+||||+++.++.+|+++|+||.+.+.++ .++.+.-.+.+.- +..+ ..++.|+..|++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 5554333333322 1111 2356777777663
No 71
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.38 E-value=0.00068 Score=46.41 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=38.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEe
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY 236 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d 236 (267)
+.+...|+||.|++++.+|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35788999999999999999999999999987765 66777777743
No 72
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.30 E-value=0.0011 Score=48.18 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
.|+|.+.||+|+|++|+.++++.|++|.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999775
No 73
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0013 Score=46.77 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=37.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
..+.|..+|+||.|++|+.+|.++|+||.+..+...++. .+|.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 357788999999999999999999999999998776553 555553
No 74
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.25 E-value=0.0016 Score=47.39 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=43.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.+.|.+.||+|+|++|+.++++.|+||....+.+. +... |.+. +.+.+.++.+...|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~-------v~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP-------TIEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE-------ecCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999775 3311 2232 2234567777776543
No 75
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.25 E-value=0.0022 Score=44.65 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=37.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEE
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 234 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v 234 (267)
+.+.+.|+||+|++|+++|+++|++|.+..+...+ +.+.-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999987765 455556666
No 76
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0033 Score=44.10 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC----CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG----SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~----~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+.|.++|+||+|++++.+|.+.|+||.+....... .+... +.++-. . .+.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~-~~i~v~--~---~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVE-VELTLE--T---RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEE-EEEEEE--e---CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988776543 23322 223221 1 134566777777543
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.20 E-value=0.002 Score=59.10 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=45.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+|+|.|+||||+.+.+++.|+++|+||.+.+.+... +.+.-.+.+.-. +..+ ..+.|++.|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence 689999999999999999999999999999999864 444434444331 2112 23556666555
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.19 E-value=0.0013 Score=60.66 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=38.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
.+.+++.|+||||++++||++|+++|+||......|.. ..+.|...
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~ 52 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR 52 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence 67899999999999999999999999999999877543 44455554
No 79
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0037 Score=43.80 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=29.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
+.+..+|+||+|++|+++|+++|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3577899999999999999999999998886554
No 80
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.14 E-value=0.019 Score=52.92 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=46.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 144 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~--~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~ 144 (267)
...+|+|.|+||||+.+.++..|+++|+||.+.+.++... .+.-.+.+..+ .+. ..+.|++.|.+.
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l 73 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPI 73 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHH
Confidence 3468999999999999999999999999999999975432 22223334322 221 245666666653
No 81
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.12 E-value=0.0024 Score=44.68 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=42.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
.|.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.-.|.+ + . .+ +..+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~--~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-G--DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-C--CH-HHHHHHHHHHh
Confidence 46788999999999999999999999999998775 3 333333444 2 1 12 34455555554
No 82
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.0037 Score=44.55 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=42.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
.|.+.+.|+||+|.+|+++|+++|++|......+.. +.+.-.|.+ . ..+....+++.+.|+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHH
Confidence 467889999999999999999999999999876543 333333333 2 222334555555554
No 83
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.06 E-value=0.001 Score=50.77 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
..+|+|.++||||+.++++.+|+++|.||++-.-+-..+.+.-.+.+.-+ -+ ......+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHH
Confidence 46899999999999999999999999999997776666666544555321 11 123455666655433
No 84
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0067 Score=43.02 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=37.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-C-eeeeEEEEE
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHVS 235 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~-~a~d~F~v~ 235 (267)
+.+.+..+|+||.|++|+++|+++|++|......... + ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4577899999999999999999999999988776652 2 344455553
No 85
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.05 E-value=0.0035 Score=44.60 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=40.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV 250 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~ 250 (267)
+-+...|+||.+++|+++|+++|+||.+..+... ++.+.-+|.+ ++ +.+.+..+.|+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v--~~-~~~~~~~~~l~ 60 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV--DE-PVPDEVLEELR 60 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe--CC-CCCHHHHHHHH
Confidence 3468999999999999999999999998887543 4455545544 44 44334444444
No 86
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.03 E-value=0.0037 Score=57.67 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=33.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
.++|.+.|+|||||++.||++|+++|+||..+.-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 56899999999999999999999999999999875
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.01 E-value=0.0051 Score=51.86 Aligned_cols=66 Identities=12% Similarity=0.262 Sum_probs=47.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l 257 (267)
..|.+...|+||.|++|+.+|+++|+||.+..+...++.....+.+.=+| ++...++|.+-|.+.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence 36888999999999999999999999999998876654433333333234 2445667777666544
No 88
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0089 Score=45.74 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=53.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 259 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~ 259 (267)
.+.|-+...|+||-|+++-..|+++|||+.+.+......+ -.=.|||.-+|. . ++..+++.+.|...|+.
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIGA 84 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhCC
Confidence 5777788899999999999999999999999998776544 445788854776 2 45445666777777653
No 89
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.00 E-value=0.006 Score=56.04 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=35.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
+|.+.|+||||+++.||++|+++|+||....-.+. ...+.|+.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr 45 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR 45 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence 57899999999999999999999999999887664 222345543
No 90
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0023 Score=57.97 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
...++++.|+|+||+.+.|++.|.++|+||.++.-++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~ 44 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP 44 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence 567999999999999999999999999999999999653
No 91
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.0078 Score=41.97 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=30.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
|.+.+.|+||.|++|+++|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 568899999999999999999999999998765
No 92
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0092 Score=42.86 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=44.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCCCCCChH-HHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPD-LLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~~l~~~~-~~erl~~~L~~ 143 (267)
.+.|.+.|+||+|++++.+|+++|.||......+..++ +.-.|.+... +.+ .+++|.+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 47899999999999999999999999999877554433 3334555431 223 66777776544
No 93
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.93 E-value=0.007 Score=44.94 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=43.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
..|.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-+.-.|. +...++|.+-|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~---~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT---ENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC---HHHHHHHHHHHhC
Confidence 467899999999999999999999999999998744444333333321221 2234455555443
No 94
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0047 Score=44.42 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=44.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
.|.+.+.||||+|++|+++|++.|++|......+.. +.+.-.|.+.-.+. +..++.|.+.|+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHhc
Confidence 578999999999999999999999999999875543 44555555533221 1144555555543
No 95
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.91 E-value=0.0059 Score=52.31 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=33.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
..+.+.+.|+||+|++|+.+|+..|+||.+..+.+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t 38 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPA 38 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEc
Confidence 468899999999999999999999999999999663
No 96
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.86 E-value=0.0091 Score=46.24 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 256 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~ 256 (267)
....|.+...|+||+|++|+..|+..|.||.+..+.-.+......+.+.-.+ +...++|.+-|.+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhCC
Confidence 4577899999999999999999999999999999866655544444433222 23455666555543
No 97
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.011 Score=41.98 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=42.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
-+.|.+.|+||+|.+++.+|.++|+||......+..+ +.....++... .+...++.+...|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence 4678899999999999999999999999888765543 33332333321 13455565665544
No 98
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.0067 Score=42.09 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
+.+..+|+||-|++++.+|+++|+||.+......+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 56788999999999999999999999988765544
No 99
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.84 E-value=0.0073 Score=45.65 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..+++...|+||.|+++++.|+..||||.+-.+..+.+.-+-.+.|.-. .| +++.++++.+.|..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999997776644433443331 13 34667777777654
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0051 Score=55.78 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe----CCCCCChH-HHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS-LSQVLVN 251 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d----~G~~l~~~-~~~~L~~ 251 (267)
...+|.++|+|+|||++.|+..|+++|+||..+.-- ++.....|+.+- .+.+++.+ .++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 468999999999999999999999999999988755 456667788863 45555444 3344433
No 101
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.80 E-value=0.01 Score=45.98 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.+...+++...|+||.|.++++.|+..||||.+-.+..+++.-+--+.|.-. + ++.+++|.+.|..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhC
Confidence 4556799999999999999999999999999998887776644333444321 1 2466777777554
No 102
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.78 E-value=0.01 Score=44.04 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=46.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..+++...|+||.|.+++++|+..|+||.+-.+.-+.+.-.-.+.|.- .| +++..++|.+.|..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~--~~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA--VC----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence 368999999999999999999999999998888755543332333332 12 24667777777554
No 103
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.76 E-value=0.012 Score=49.91 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=44.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 256 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~ 256 (267)
..|.+...|+||.|++|+.+|+++|+||.+..+....+.....+.+.=+| ++...+++.+-|.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~~~~i~qi~kQl~KL 67 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcc
Confidence 46888999999999999999999999999998865543333323332133 233455665555543
No 104
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.71 E-value=0.002 Score=45.55 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=34.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
+-+.+.|+||+|++|+.+|.+.|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555445444444
No 105
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.66 E-value=0.026 Score=40.84 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=44.9
Q ss_pred EEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 192 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 192 ~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
-+...|+||-|++|..+|+++|+||.+.+...... ...=.|||.-.|.. .+...+.+.+.|..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHH
Confidence 35568999999999999999999999998765544 56667888656642 23334445555544
No 106
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.64 E-value=0.026 Score=39.25 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=33.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeeE
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQ 114 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~-~~~~~ 114 (267)
.+.+.+.|+||+|.+++.+|.++|++|......+. +++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~ 42 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGIS 42 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeE
Confidence 46788999999999999999999999999888765 34443
No 107
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.62 E-value=0.0091 Score=40.69 Aligned_cols=44 Identities=9% Similarity=0.264 Sum_probs=35.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeeEEEEEE
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFI 119 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~~d~F~I 119 (267)
+.|...|+||.|.+++.+|.+.|+||....+...+ +...-.|.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 45788999999999999999999999999988876 333444444
No 108
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.028 Score=39.76 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=33.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
..+.|..+|+||.|.+++..|.++|+||.........
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~ 38 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR 38 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence 4678899999999999999999999999988777753
No 109
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.021 Score=39.89 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
.+.|.++|+||.|++++..|.+++++|.........
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 578899999999999999999999999988877654
No 110
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.57 E-value=0.018 Score=42.00 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=44.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
.|-+...|+||-|+++-..|+++|+|+.+.+......+ ..=.|||.-+| .++..+++.+.|.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~ 64 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLR 64 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHH
Confidence 34456689999999999999999999999998666544 45577775477 2333344444443
No 111
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.57 E-value=0.0097 Score=61.04 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=62.4
Q ss_pred eEEEEEEe-CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 024465 188 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP 260 (267)
Q Consensus 188 ~t~l~i~~-~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~-~~~~L~~~L~~~l~~~ 260 (267)
...+.|.. +|++|+|+++..+|+.+|++|.+|.+.+ ++.+...|.|.. .|.+.++. ..|+++.++.-.++-+
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 35677777 9999999999999999999999999999 888999999998 88888777 6788888887666543
No 112
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.57 E-value=0.015 Score=43.98 Aligned_cols=64 Identities=11% Similarity=0.201 Sum_probs=46.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYY 256 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~ 256 (267)
.|.+...|+||.|++|+..|+..|+||.+..+..........+-+.- .|. +...+++.+-|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCC
Confidence 57788999999999999999999999999999776665555444433 242 23456666655543
No 113
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.014 Score=40.83 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
.|.+.+.|+||.|++|++.|+++|++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 46788999999999999999999999999887665
No 114
>PRK08577 hypothetical protein; Provisional
Probab=96.53 E-value=0.019 Score=46.91 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=35.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
..+.|.+.+.|+||+|++|+++|+++|++|.+....+..
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 488999999999999999999999999999999887754
No 115
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.022 Score=40.50 Aligned_cols=46 Identities=28% Similarity=0.339 Sum_probs=35.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEE
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV 234 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v 234 (267)
+.+.+..+|+||.|.+++++|.++|+||.+....-. ++.+.-.|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 567888999999999999999999999998865332 2334444444
No 116
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.011 Score=41.83 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=37.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEE
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 120 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~ 120 (267)
..+.|..+|+||.|++++.+|.+.|+||....++..++. ..+.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 367889999999999999999999999999988777663 334443
No 117
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.35 E-value=0.031 Score=47.14 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=46.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.++|...|+||.|++++++|++.|+||.+-.+...++ +... +.++- +| ++...++|.+.|..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V--~~----d~~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVV--VG----DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEE--EC----CHHHHHHHHHHHhc
Confidence 6889999999999999999999999999998887763 3332 33332 23 24567778877665
No 118
>PRK08577 hypothetical protein; Provisional
Probab=96.34 E-value=0.081 Score=43.13 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=40.2
Q ss_pred EEEEeec--CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 62 HVLIDQD--SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 62 ~V~i~~~--~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
.+.+.+- ..+..+.+.|.+.|+||+|++++.+|+++|+||......+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 4445433 345578999999999999999999999999999988877765
No 119
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.32 E-value=0.034 Score=47.68 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
..+.|.+.|+||+|.++++.|+..|+||.+-.+....+.-.-.+.|.-+ |. +..+++|++.|....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999986644433223443332 21 233677777776643
No 120
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.32 E-value=0.017 Score=39.98 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeeEEEEEE
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFI 119 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~--~~~~d~F~I 119 (267)
+.|.+.|+||++.+++.+|.++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57899999999999999999999999999988765 333344555
No 121
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.31 E-value=0.041 Score=46.57 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..++|...|+||.|+++++.|+..|+||.+-.+.... ++... +.++- +| +++.++++.+.|..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V--~~----~~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVT--SG----DEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEE--EC----CHHHHHHHHHHHhc
Confidence 4688999999999999999999999999998887765 33332 33332 23 24667888877665
No 122
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.24 E-value=0.027 Score=41.80 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=37.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEE
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 234 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v 234 (267)
..|.+...|+||.|++|+++|+..|.||.+..+.... +...=++.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 5688999999999999999999999999999986633 334444444
No 123
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.23 E-value=0.022 Score=36.38 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=31.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
|.+.+.|++|++++|+.+|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 45788999999999999999999999999987654
No 124
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.033 Score=39.97 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 109 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~ 109 (267)
+.|.-+|+||-|++++.+|.++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778899999999999999999999998876665
No 125
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.054 Score=37.58 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 109 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~ 109 (267)
+.+.+.|+||.+.+++..|+++|++|........
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~ 35 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK 35 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence 5788999999999999999999999998887663
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.19 E-value=0.036 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
+.+..+|+||-|++++.+|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678999999999999999999999998876554
No 127
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.10 E-value=0.088 Score=35.33 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.7
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
+.|.+.|+||.+..++..|.+.+++|....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 45789999999999999999999999999887765
No 128
>PRK07334 threonine dehydratase; Provisional
Probab=96.04 E-value=0.034 Score=53.41 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=46.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-----g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
.+.|.|.+.||||+|++|+++|++.++||.+....+. ++.+.-.|.+.=. +.+++++|.+.|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998764 3344334444211 12256666666654
No 129
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.03 E-value=0.045 Score=37.82 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
++.|.-+|+||-|.+++.+|.++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367888999999999999999999999888776654
No 130
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.01 E-value=0.12 Score=37.93 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=44.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+.+.+..+|+||.|+++...|.++|+||.+-.....++ ...-.|+|.- +|. .. ....+.+...|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~--~~~-~~-~~~~~~~l~~l~ 67 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF--EGH-IE-DPNVAEALEELK 67 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE--ECC-CC-CHHHHHHHHHHH
Confidence 34667779999999999999999999999887666544 2335577765 343 22 234444444443
No 131
>PRK04435 hypothetical protein; Provisional
Probab=96.01 E-value=0.091 Score=43.66 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=53.5
Q ss_pred EEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHH
Q 024465 62 HVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLT 140 (267)
Q Consensus 62 ~V~i~~~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~ 140 (267)
+.-+.....+....+.+.+.|+||+|+++..+|+++|+||..-......++. .-.|.|... +. ...++.|...
T Consensus 58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li~~ 131 (147)
T PRK04435 58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELLEK 131 (147)
T ss_pred eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHHHH
Confidence 3445555566778999999999999999999999999999988776554554 344555432 11 1356666666
Q ss_pred HHH
Q 024465 141 IIN 143 (267)
Q Consensus 141 L~~ 143 (267)
|+.
T Consensus 132 L~~ 134 (147)
T PRK04435 132 LRN 134 (147)
T ss_pred HHc
Confidence 544
No 132
>PRK07334 threonine dehydratase; Provisional
Probab=95.96 E-value=0.054 Score=52.00 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=48.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~----~~~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+.+.|.+.||||+|.+|+.+|++.+.||.+....+. .++.. -.|.|.- .+.+.+++|...|+.
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998765 34442 3344432 245778888888654
No 133
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.95 E-value=0.038 Score=37.18 Aligned_cols=35 Identities=34% Similarity=0.664 Sum_probs=31.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
|.+.+.|+||++.+|+..|.+++++|....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 45779999999999999999999999999987765
No 134
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.92 E-value=0.041 Score=35.08 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
|.+.++|+||++.+++++|.+.|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987764
No 135
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.89 E-value=0.063 Score=39.80 Aligned_cols=61 Identities=7% Similarity=0.132 Sum_probs=45.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE--EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ--TKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~--d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..+++...|+||.|.++++.+...||||.+-.+..+.+.-. -++.+ . + +..++.|.+.|..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-S------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-C------CchHHHHHHHHhc
Confidence 47899999999999999999999999999999977655433 23333 1 2 2455666666544
No 136
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.81 E-value=0.0059 Score=51.90 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=45.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 236 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d 236 (267)
++.+|...+.||||++..|+|...++|+|+...+++..|+...-+..|+.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg 53 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG 53 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence 37899999999999999999999999999999999999999887777743
No 137
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.78 E-value=0.67 Score=44.27 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 71 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 71 ~~~t~V~V~---~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
++...|+|. ..++||.+.++..+|.+.|++|..-...... .--.|.|.. +..+++.+.|...+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~----------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE----------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence 467788888 5788999999999999999999754332111 212355532 2233444444432211
Q ss_pred cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEE
Q 024465 148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 219 (267)
Q Consensus 148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a 219 (267)
.. ...+.++ .+...|.+.+. ++||+++++.++|++.|+||...
T Consensus 326 ~~--------------------------~~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 326 AG--------------------------LDRVEVE---EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred cC--------------------------CceEEEe---CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 00 0011122 24667777665 78999999999999999999853
No 138
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.076 Score=39.03 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=40.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCC
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA 240 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~ 240 (267)
.|-+..+|+||-|+++-.+|+.+|+|+.+.+....... .+=.|||.-.|..
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ 53 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence 34456689999999999999999999999998776444 5557888546654
No 139
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.67 E-value=0.051 Score=47.66 Aligned_cols=60 Identities=13% Similarity=0.346 Sum_probs=46.0
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHH
Q 024465 186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQV 248 (267)
Q Consensus 186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~ 248 (267)
+++..|-+.-.||||.+..|+.+|.++|+||..+.+.-. |+.|.-+..+ ..+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHHHHhh
Confidence 356778888999999999999999999999999999664 4555555555 45566654443
No 140
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.56 E-value=0.011 Score=41.73 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=31.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 113 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~ 113 (267)
+.+.+.|+||+|.+++.+|.+.|+||......+.++.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a 39 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIG 39 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEE
Confidence 57799999999999999999999999887665544333
No 141
>PRK04435 hypothetical protein; Provisional
Probab=95.38 E-value=0.11 Score=43.23 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~-g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
.....|.+...|+||+|++|.++|++.|+||........ ++.+.-.|-+.-.+. ...+++|.++|.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~ 133 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR 133 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence 348899999999999999999999999999998876543 344555555533221 113455555554
No 142
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.36 E-value=0.091 Score=37.22 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 109 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~ 109 (267)
+.+.+..+|+||.|..++.+|.++|+||.+......
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 578899999999999999999999999998766544
No 143
>PRK11899 prephenate dehydratase; Provisional
Probab=95.34 E-value=0.1 Score=48.00 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=44.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL 241 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l 241 (267)
.+.|-+...|+||.|+++-.+|+++|||+++.+....+++ -.=.|||.-.|..-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~ 248 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPE 248 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCC
Confidence 4777777899999999999999999999999999776555 55578885478643
No 144
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.31 E-value=0.042 Score=39.04 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
|+||.|.+|+.+|+..|+||.+..+........-.+.++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~ 39 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV 39 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE
Confidence 789999999999999999999999988444433334443
No 145
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.27 E-value=0.061 Score=38.05 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=34.1
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc--CCeeEEEEEE
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFI 119 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~--~~~~~d~F~I 119 (267)
+.+...|+||.++++++.|.++|+||.+-..... ++...-.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4678999999999999999999999988877554 2333433444
No 146
>PRK06635 aspartate kinase; Reviewed
Probab=95.22 E-value=0.6 Score=44.62 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465 71 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 148 (267)
Q Consensus 71 ~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~ 148 (267)
++...|+|. ..++||.+.++..+|.+.|+||..-..+...++. --.|.|.. +..++..+.|.. +...
T Consensus 260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~ 328 (404)
T PRK06635 260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDE 328 (404)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHH
Confidence 455666665 5778999999999999999999975444333222 23354432 223333444433 1100
Q ss_pred CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEEE
Q 024465 149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
. + ...+.+.+ +...+.+.+ .++||.+++|.++|+++|++|....
T Consensus 329 -~------------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 329 -I------------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred -c------------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 0 0 00111222 366677765 6899999999999999999998753
No 147
>PRK06291 aspartate kinase; Provisional
Probab=95.16 E-value=2.3 Score=41.66 Aligned_cols=110 Identities=12% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|.+. +.||+++++..+|.+.|++|..-...+.... -.|.|.. +..++..+.|...+.
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~----------~d~~~av~~L~~~~~ 385 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDE----------ADLEKALKALRREFG 385 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeH----------HHHHHHHHHHHHHHH
Confidence 356778888764 7899999999999999999987544332222 2355543 122333444444332
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
.... ..|.+.+ +...|.+.+. +++|+++++..+|.+.|++|....
T Consensus 386 ~~~~--------------------------~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 386 EGLV--------------------------RDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred HhcC--------------------------cceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 2000 0111222 4667777775 789999999999999999998554
No 148
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.06 E-value=0.16 Score=52.35 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=48.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+.|.|.+.||+|+|.+|+.+|+.++.||.+.++.+..++. .-.|.|.- .+.+.+++|...|..
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 4778999999999999999999999999999987766544 33344432 234677877777554
No 149
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.05 E-value=0.097 Score=54.17 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=46.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC--CeeeeEEEEEeCCCCCChH-HHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSS-LSQVLVNCLRY 255 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g--~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~~ 255 (267)
.+.|.|.+.||+|||++|+.+|++.++||..+.+.+.. +.+.-.|.|. +.+- .+..|.+.|+.
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999987753 4455555552 2222 45566655543
No 150
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.01 E-value=0.17 Score=35.99 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 77 QLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 77 ~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.|.-+||||-|..++.+|.. |.||..-.-...+.+....++.-.. .+++..+.+.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 57789999999999999999 9999987665444333333433332 134667777777654
No 151
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.96 E-value=0.16 Score=52.69 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=48.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-Cee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~-~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..|.|.+.||+|||.+|+.+|+++++||...++.+.. ++. .-.|.|.- .+...+++|...|..
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999998764 433 33455432 234677878777654
No 152
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.93 E-value=0.17 Score=52.24 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=46.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC-eeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSS-LSQVLVNCLR 254 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~-~a~d~F~v~d~G~~l~~~-~~~~L~~~L~ 254 (267)
.+.|.|.+.||+|+|++|+.+|++.++||.++.+.+.++ .+.-.|.+. +.+- .++.|...|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-----ARDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 568999999999999999999999999999999887653 344444442 1222 4555555554
No 153
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.89 E-value=0.046 Score=40.35 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=48.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeE--EEEEeCCCCCChH-HHHHHHHHHHHHc
Q 024465 191 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDK--FHVSYGGAALNSS-LSQVLVNCLRYYL 257 (267)
Q Consensus 191 l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~--F~v~d~G~~l~~~-~~~~L~~~L~~~l 257 (267)
+|+++.-||-.++|+|-+|+..|+.|-+|+|.-+ +++.-.+ |.+.+.+..++.. ..+++...+.+.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999432 4443333 3334455556654 5677777666554
No 154
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.72 E-value=0.067 Score=51.64 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=49.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 250 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~ 250 (267)
....|-+.-.|+||.++.|+.+|+++|+||...++...|+.|.-+|.+ ++ +++++.+++|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHHH
Confidence 457788899999999999999999999999999999999777776655 44 55555555555
No 155
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.68 E-value=0.076 Score=39.20 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-e-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-K-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
|.+.++-||..|+|++-+|..++.-|++|.|.....+ . -..|.+.-.+.+..+......+++...+...|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999654432 2 12233332212333444445566666655544
No 156
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.59 E-value=0.12 Score=36.63 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 82 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 82 DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
|+||.|.+++++|...|+||.+-.+....+.-.-.+.+.- +|. ++..+.|.+.|..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence 7899999999999999999999999885554433344443 232 2355666666544
No 157
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.47 E-value=0.61 Score=33.52 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+.+..+|+||-|+++...|.++|+|+.+-.-.-... ...-.|+|.- +|.. ++...+.+...|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~--~~~~~~~~l~~l~ 65 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI--DDPDVKEALEELK 65 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC--CCHHHHHHHHHHH
Confidence 345568999999999999999999999885544433 2334577765 3431 1234444444443
No 158
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.21 Score=45.95 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=45.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALN 242 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~ 242 (267)
.|.|-+..+|+||.|+++-.+|+.+|||+++.+....+.. ..=.|||.-.|..=+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 7888888899999999999999999999999999766655 555777743777644
No 159
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.42 E-value=0.26 Score=50.68 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR 254 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~ 254 (267)
.+.|.|.+.||+|+|++|+.++++.++||.++.+.+.. +.+.-.|-|. +.+- .+..|...|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-----IKNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 56899999999999999999999999999999998764 3333333331 1222 4555555554
No 160
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.37 E-value=0.15 Score=40.79 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=42.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA 240 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~ 240 (267)
.+.|-+...|+||-|++|-..|+++|||+.+.+.-..+.. -.=.|||.-.|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence 4677777799999999999999999999999998777555 3446777536653
No 161
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.35 E-value=0.36 Score=49.71 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE-EEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~-d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.+.|.|.+.||+|+|.+|+.+|+.++.||.+.++.+..++.. -.|.|.- .+.+.+++|...|..
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 347889999999999999999999999999999987754443 3344432 234677777777543
No 162
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.81 E-value=0.41 Score=49.22 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=52.7
Q ss_pred CEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEE-EEEEEeCCCCCCCCChHHHHH
Q 024465 61 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT-KFFITRLDTGRKVEDPDLLER 136 (267)
Q Consensus 61 p~V~i~~~~~---~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d-~F~I~~~~~g~~l~~~~~~er 136 (267)
..|.+.+..+ .--..|.|.+.||+|||.+++.+|+.++.||......+..+.... .|.|. +.+...+.+
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~ 684 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGR 684 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHH
Confidence 3455554433 233478999999999999999999999999999999887444432 23332 223466777
Q ss_pred HHHHHHH
Q 024465 137 IRLTIIN 143 (267)
Q Consensus 137 l~~~L~~ 143 (267)
|...|.+
T Consensus 685 i~~~l~~ 691 (701)
T COG0317 685 VLARLKQ 691 (701)
T ss_pred HHHHHhc
Confidence 7776543
No 163
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.59 E-value=0.25 Score=35.09 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 70 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 70 ~~~~t~V~V~~~----DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
+.++..|+|.+. |.||.++++...|++.|++|+... ...-+.+.|..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~ 53 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE 53 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence 356788999988 799999999999999999998766 22334566654
No 164
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.37 E-value=1.5 Score=33.42 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=48.2
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 68 DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 68 ~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
+..++.+-+.+..+|+||-|+++...|.+.|+|+.+-.-.-..... .-.|||.- +|. . + ..+..+...|.+.|
T Consensus 9 ~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 9 SNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI 82 (90)
T ss_pred cCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence 3344556677777999999999999999999999876665543322 34588865 454 1 2 34444445544444
No 165
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.29 E-value=0.48 Score=45.55 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=43.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL 241 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l 241 (267)
.+.|-+...|+||.|+++-..|+.+|||+.+.+.-..+++ -.=.|||.-.|..-
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~ 351 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLR 351 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCC
Confidence 6667777789999999999999999999999999765544 66678884477543
No 166
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.22 E-value=0.29 Score=41.75 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=38.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 119 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I 119 (267)
-+.|.+.++||.|.++++.+++.|.||..|+.+..+++-....|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm 48 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM 48 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence 467889999999999999999999999999999999875433343
No 167
>PRK08210 aspartate kinase I; Reviewed
Probab=93.18 E-value=5.2 Score=38.27 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccC
Q 024465 71 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 149 (267)
Q Consensus 71 ~~~t~V~V~~~DR-pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~ 149 (267)
++...|+|...+. ||.+++|...|.+.|+||..-..+. .. -.|.+.. +..+++.+.|.+ + +
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~----------~~~~~a~~~l~~-~-~-- 330 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD----------EDSEKAKEILEN-L-G-- 330 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH----------HHHHHHHHHHHH-h-C--
Confidence 4667888876555 9999999999999999999875442 21 2344432 223334333322 1 0
Q ss_pred CCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEE
Q 024465 150 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES 218 (267)
Q Consensus 150 ~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~ 218 (267)
. .+.+.+ +...|.+.+. ++||+++++.++|.+.|++|..
T Consensus 331 ~---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 331 L---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred C---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 0 011212 3566666665 7899999999999999999964
No 168
>PLN02551 aspartokinase
Probab=93.03 E-value=5.3 Score=39.97 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|.+. +.+|.++++...|.++|++|..-. +.. .--.|.+... + + ...+.+++.+...+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~-~---~---~~~~~i~~~l~~l~~ 431 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPS-K---L---WSRELIQQELDHLVE 431 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehh-H---h---hhhhhHHHHHHHHHH
Confidence 457788898765 689999999999999999998763 222 2234666542 1 1 112334444333221
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCccEEEEEEEec
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTE 224 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~--DRpGLL~~Itr~l~~~gl~I~~a~i~T~ 224 (267)
. +. + ...|.+.+ +..+|.|.+. .+||+++++.++|+++|++|.... .
T Consensus 432 e--------l~-----------~------~~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---q 480 (521)
T PLN02551 432 E--------LE-----------K------IAVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---Q 480 (521)
T ss_pred H--------hh-----------c------CCeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---e
Confidence 1 00 0 01122222 3566666654 689999999999999999998776 3
Q ss_pred CCeeeeE-EEE
Q 024465 225 GLVAKDK-FHV 234 (267)
Q Consensus 225 g~~a~d~-F~v 234 (267)
|....+. |.|
T Consensus 481 gaSeinIS~vV 491 (521)
T PLN02551 481 GASKVNISLIV 491 (521)
T ss_pred cCCCcEEEEEE
Confidence 4344443 555
No 169
>PRK09181 aspartate kinase; Validated
Probab=92.91 E-value=7.8 Score=38.30 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=68.5
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
++.+.|+|.+. +.+|++.++...|.+.|++|.. +.+... --.|.|.. + .++++++.+.|...+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~~--sis~~v~~--~------~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNAN--TITHYLWG--S------LKTLKRVIAELEKRYPN 394 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecCc--EEEEEEcC--C------hHHHHHHHHHHHHhcCC
Confidence 47788888654 7899999999999999999983 333322 22355543 1 12344444443322210
Q ss_pred cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCccEEEEE
Q 024465 148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~D--RpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
.. +. . .+..+|.+.+.. +||+.+++..+|++.|+||....
T Consensus 395 -----------------------------~~--i~-~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 395 -----------------------------AE--VT-V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred -----------------------------ce--EE-E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 01 11 1 245667776654 89999999999999999997765
No 170
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.83 E-value=0.65 Score=37.48 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=36.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 114 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~ 114 (267)
++-|...|+||=|++|+.+|.+.++|+-.+..+++....+
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA 110 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA 110 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence 6788999999999999999999999999999998877543
No 171
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.76 E-value=0.4 Score=34.08 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=39.6
Q ss_pred EEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465 192 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 192 ~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~ 255 (267)
.+.-+||||-|.++++++.+ |.||....-.-.+.....++..-. .+ ....+.|.++|..
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 46789999999999999999 999998876554433333333322 32 2355666666653
No 172
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.76 E-value=0.31 Score=46.59 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=40.2
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCC
Q 024465 187 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 238 (267)
Q Consensus 187 ~~t~l~i~~~-DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G 238 (267)
..+.|.+.-+ |+||.|++|+.+|+++||||.+.++ .....-.-.|++.-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 4677777776 9999999999999999999999999 4443344448886444
No 173
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.60 E-value=0.73 Score=47.43 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=36.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 228 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a 228 (267)
.+.|.|.+.||+|||++|+++|+..++||......+.+.+.
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~ 667 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQF 667 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCce
Confidence 66899999999999999999999999999999988764443
No 174
>PRK06382 threonine dehydratase; Provisional
Probab=92.37 E-value=0.36 Score=46.40 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=32.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
.+.+.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 67899999999999999999999999999988764
No 175
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.15 E-value=11 Score=39.80 Aligned_cols=114 Identities=11% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|.+. .+||.+.++...|.+.|++|......+.. .--.|.|.. +..++..+.|.+.+.
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~ 379 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFA 379 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence 357788999865 68999999999999999999766544322 222355543 122333333333231
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEE
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
. .+. . . ....|.+. .+...|.+.+. ++||+++++..+|.+.|++|....
T Consensus 380 ~-------el~----~-----~------~~~~i~~~---~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 380 L-------ELK----E-----G------LLEPLEVE---ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred H-------Hhc----c-----C------CcceEEEe---CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 1 000 0 0 00012222 24677777776 789999999999999999998775
No 176
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.98 E-value=1.5 Score=32.58 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=38.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEE-EEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT-KFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d-~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
++.|.-+|+||-|.+++.+|. +.||.+..-.....+... .+.+.-. +| ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence 578889999999999999999 666664444333222222 2334332 11 3566777777554
No 177
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.74 E-value=0.55 Score=40.10 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=36.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCC--eeeeEEEE
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHV 234 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~--~a~d~F~v 234 (267)
-|.+.+.++||.|.++|-++++.|.||+.++-...++ .+.-.|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 3678899999999999999999999999999766654 44444444
No 178
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.49 E-value=0.13 Score=38.59 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=29.0
Q ss_pred EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 024465 75 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 75 ~V~V~~~D-RpGLL~di~~~L~~~~lnI~~A~I 106 (267)
+|+|.++| ..|.+++++.+|+++|+||.+-+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 48999999 999999999999999999976544
No 179
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.24 E-value=0.16 Score=38.12 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=27.7
Q ss_pred EEEEeCC-cccHHHHHHHHHHhCCccEEEEEE
Q 024465 191 LYIETAD-RPGLLVEIMKIIADVNVDVESAEI 221 (267)
Q Consensus 191 l~i~~~D-RpGLL~~Itr~l~~~gl~I~~a~i 221 (267)
+.+.+.| ++|+++.|+++|+++|+||.+.+-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 6788999 999999999999999999976553
No 180
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.23 E-value=0.57 Score=46.69 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=45.9
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN 251 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~ 251 (267)
++..|-+...|+||.+..|+.+|.++|+||...++.-. |+.+.-++.+ ..+++++.+++|++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHhc
Confidence 35556667799999999999999999999999998653 4455544444 55666766666654
No 181
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.20 E-value=9.5 Score=37.00 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465 71 SDATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 148 (267)
Q Consensus 71 ~~~t~V~V~~~DR--pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~ 148 (267)
++...|+|.+.+- +|.+.++...|.+.|++|......+.... -.|.|... ..++..+.|.......
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s--Is~~I~~~----------~~~~a~~~L~~~~~~~ 367 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS--ISFTVDKE----------DADQAKTLLKSELNLS 367 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce--EEEEEEHH----------HHHHHHHHHHHHHHhc
Confidence 4667788875433 79999999999999999987653232211 23555431 1222222222211100
Q ss_pred CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCccEEEEE
Q 024465 149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
. ...|.+.+ +...+.+.+ .++||++++|.++|++.|++|....
T Consensus 368 -~-------------------------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 -A-------------------------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -C-------------------------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0 01122222 466777754 4789999999999999999997775
No 182
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.96 E-value=0.46 Score=47.35 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=45.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN 251 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l~~~~~~~L~~ 251 (267)
++..|-+.-.||||.+..|+.+|.++++||...++.-. |+.+.-++.+ ..+++++.+++|++
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIKA 513 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHhc
Confidence 34556667799999999999999999999999988643 4555544444 45777776666654
No 183
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.78 E-value=1.8 Score=37.88 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 024465 70 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 112 (267)
Q Consensus 70 ~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~ 112 (267)
...+..+.+.-.|+||.+..+..+|.++|+||-..++.....+
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g 187 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIG 187 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCC
Confidence 3455677788899999999999999999999999999887643
No 184
>PRK09034 aspartate kinase; Reviewed
Probab=90.66 E-value=18 Score=35.43 Aligned_cols=113 Identities=15% Similarity=0.283 Sum_probs=69.6
Q ss_pred CCCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|.+ .+++|.++++...|.++|++|..- . .+..--.|.|... + +. ...+..+...|...+.
T Consensus 305 ~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~sis~~v~~~-~---~~-~a~~~~l~~el~~~~~ 375 (454)
T PRK09034 305 DKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDLSIIIRER-Q---LT-PKKEDEILAEIKQELN 375 (454)
T ss_pred cCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEEEEEEeHH-H---hh-HHHHHHHHHHHHHhhC
Confidence 34667888874 678999999999999999999875 2 2222234666542 1 10 0011223222221110
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
. ..|.+.+ +-..|.+.+. ++||+++++..+|+++|++|....-.+
T Consensus 376 ---~--------------------------~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 376 ---P--------------------------DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred ---C--------------------------ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0 0111222 3667777543 789999999999999999998875433
No 185
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=90.26 E-value=2.7 Score=30.37 Aligned_cols=46 Identities=15% Similarity=0.383 Sum_probs=34.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEe
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITR 121 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~ 121 (267)
+.+..+|+||-|+++...|...|+|+.+-.-....... .-.|||.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44555899999999999999999999876655444322 34577865
No 186
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.26 E-value=0.62 Score=44.00 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=39.8
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 186 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 186 s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
+..+.|.|.-+||||-|++|+..|.+.|+||++.+|.-.-+...-++.+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 3578999999999999999999999999999999995544444444444
No 187
>PRK07431 aspartate kinase; Provisional
Probab=90.24 E-value=22 Score=35.83 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=82.6
Q ss_pred CCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eeEE-EEEEEeCCCCCCCCChHHHHHHHHHHHHHh
Q 024465 70 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNL 145 (267)
Q Consensus 70 ~~~~t~V~V~-~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~--~~~d-~F~I~~~~~g~~l~~~~~~erl~~~L~~~L 145 (267)
.++...|+|. ..+.+|+++++...|.++|++|..-......+ +..+ .|.+.. +.+.++...+++ |
T Consensus 436 ~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l 504 (587)
T PRK07431 436 DRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-L 504 (587)
T ss_pred cCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-H
Confidence 4566777765 67889999999999999999998765532222 2222 244432 222333333333 2
Q ss_pred hccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 146 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 146 ~~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
....+. ..+.+. .+...+.+.+. .+||+++++.++|.+.|++|....
T Consensus 505 ~~~~~~-------------------------~~i~~~---~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~-- 554 (587)
T PRK07431 505 AKQLPG-------------------------AEVEDG---PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA-- 554 (587)
T ss_pred HHhcCC-------------------------ceEEEe---CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--
Confidence 210000 011122 24677888776 889999999999999999996655
Q ss_pred ecCCeeee-EEEEEeCCCCCChHHHHHHHHHHHHHc
Q 024465 223 TEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYL 257 (267)
Q Consensus 223 T~g~~a~d-~F~v~d~G~~l~~~~~~~L~~~L~~~l 257 (267)
| ...+ .|.|. ....+...++|+..+
T Consensus 555 ~---S~~~Is~vV~-------~~~~~~av~~Lh~~f 580 (587)
T PRK07431 555 T---SEIRTSCVVA-------EDDGVKALQAVHQAF 580 (587)
T ss_pred c---cceEEEEEEe-------HHHHHHHHHHHHHHh
Confidence 2 3333 35552 224455566777666
No 188
>PRK11898 prephenate dehydratase; Provisional
Probab=89.76 E-value=1.9 Score=39.62 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred eEEEEEEeCC-cccHHHHHHHHHHhCCccEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 188 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 188 ~t~l~i~~~D-RpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
.+.|-+...+ +||.|+++-.+|+++|+|+.+.+.....++ -.=.|||.-+|.. .++..+++.+.|..
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence 4556666655 699999999999999999999998766544 5557888547754 44433444444443
No 189
>PRK08198 threonine dehydratase; Provisional
Probab=89.63 E-value=3.7 Score=39.29 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~----~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.....+.|.-+|+||-|.+++..|.+.|.||.+-..... +.+.....+.-+. .+++..+.|.+.|++
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET------RGPEHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 445689999999999999999999999999998876542 2233333332221 134566667776544
No 190
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.49 E-value=0.71 Score=32.72 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.8
Q ss_pred eEEEEEEeC----CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 188 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 188 ~t~l~i~~~----DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
...|.|.+. |.||+++.+++.|+++|++|.... | .-.+.|.|
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV 51 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILV 51 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEE
Confidence 556777776 799999999999999999997766 2 23455656
No 191
>PLN02317 arogenate dehydratase
Probab=89.34 E-value=2.6 Score=40.51 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=48.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC 252 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~---------------a~d~F~v~d~G~~l~~~~~~~L~~~ 252 (267)
.|.|-+.-.|+||.|+++-.+|+.+|||+.+.+......+ -.=.|||.-+|.. .++..++..+.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~ 361 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH 361 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence 4677777789999999999999999999999998765544 2337888547754 34433444444
Q ss_pred HHH
Q 024465 253 LRY 255 (267)
Q Consensus 253 L~~ 255 (267)
|..
T Consensus 362 L~~ 364 (382)
T PLN02317 362 LQE 364 (382)
T ss_pred HHH
Confidence 443
No 192
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=89.08 E-value=2.4 Score=41.41 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=42.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA 240 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~ 240 (267)
.+.|-+...|+||-|++|-++|+++|||+.+.+.-... ..-.=.|||.-.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc
Confidence 57777788999999999999999999999999986654 334557888646664
No 193
>PRK06382 threonine dehydratase; Provisional
Probab=88.91 E-value=3.1 Score=40.04 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE----EcCCe-eEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~----T~~~~-~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
...+.+.|.-+|+||-|.+++.+|.++|.||.+-... ....+ ..-.|.|... +++..+.|.+.|++
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999887664 22222 2334444331 23445566666544
No 194
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.74 E-value=4.5 Score=29.55 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=34.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEe
Q 024465 76 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 121 (267)
Q Consensus 76 V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~ 121 (267)
+.+..+|+||-|+++-..|...|+|+.+-.-...... ..-.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4445589999999999999999999988666554432 234588865
No 195
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=88.60 E-value=2.3 Score=41.76 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=43.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee-e-eEEEEEeCCCC
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA-K-DKFHVSYGGAA 240 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a-~-d~F~v~d~G~~ 240 (267)
..+.|-+...|+||-|+++-++|+++|||+.+.+........ . =.|||.-.|..
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence 467777778999999999999999999999999987665443 3 47888546654
No 196
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=88.47 E-value=27 Score=34.35 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|... ..+|.++++...|.+.|+||..-........ -.|.+... ...+..+.|.+.+.
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~ 371 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKL 371 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHh
Confidence 356777777743 3459999999999999999986544433334 34666432 12223333333222
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
.. . . ++.++. +...+.+.+. ..||..+.+..+|++.|+||....
T Consensus 372 ~~-~-----------------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--- 418 (447)
T COG0527 372 EL-L-----------------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--- 418 (447)
T ss_pred hh-c-----------------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE---
Confidence 10 0 0 111222 2445555554 679999999999999999999877
Q ss_pred cCCeeeeEEEE
Q 024465 224 EGLVAKDKFHV 234 (267)
Q Consensus 224 ~g~~a~d~F~v 234 (267)
-....=.|.|
T Consensus 419 -sSe~~Is~vV 428 (447)
T COG0527 419 -SSEISISFVV 428 (447)
T ss_pred -cCCceEEEEE
Confidence 2223335666
No 197
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.27 E-value=2.4 Score=41.10 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=39.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 236 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d 236 (267)
..+.|.+...|+||.|++|+.+|.++|++|.+..-....+.....+++++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 46788888999999999999999999999998876543334455666665
No 198
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.22 E-value=1.8 Score=36.66 Aligned_cols=67 Identities=12% Similarity=0.304 Sum_probs=45.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 024465 189 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 258 (267)
Q Consensus 189 t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~ 258 (267)
-.+.+.-.|.||.|+.++..|+..|+||.+..+.-.........-+.-.| ++...+++.+-|...++
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhcc
Confidence 45667788999999999999999999999999855443333322222244 22345666666655554
No 199
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.10 E-value=1.3 Score=42.75 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=40.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 119 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I 119 (267)
+...+.|.-+|+||.++.|+..|.++|+||-.-++.+.++.++-+|-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 566788899999999999999999999999999998888666544433
No 200
>PRK14646 hypothetical protein; Provisional
Probab=87.35 E-value=11 Score=31.59 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 85 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 85 GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.+...+..++..+||.+++..+...+...+-..+|... +|..+ +-+.++.+-+.|.+.|.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~-~g~gV-tldDC~~vSr~is~~LD 67 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKT-NGDDI-SLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCc-cHHHHHHHHHHHHHHhC
Confidence 46667888999999999999999988877656666543 44334 34778888888877775
No 201
>PRK06545 prephenate dehydrogenase; Validated
Probab=86.71 E-value=3 Score=39.32 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=40.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEE
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 119 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I 119 (267)
+.+..|.|.-+||||-+++++..|...|+||.+-.|....+...-.+.+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 4678999999999999999999999999999999997765544333444
No 202
>PRK07431 aspartate kinase; Provisional
Probab=86.40 E-value=23 Score=35.66 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
++...|.|.+. +.||++.++..+|.+.|++|..-. + ...--.|.|.. +..++..+.|...+..
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence 47788999885 899999999999999999997655 2 22222355543 2234444555544522
Q ss_pred cCCCchhHhhhccccCccCCCcc-cccccceeEEeccCCCCeEEEEE-EeCCcccHHHHHHHHHHhCCccEEEEEE
Q 024465 148 YHPESSEQLAMGEAFGIKAPEKK-LDVDIATHIHVKEDGPKRSLLYI-ETADRPGLLVEIMKIIADVNVDVESAEI 221 (267)
Q Consensus 148 ~~~~~~~~la~~~~~~~~~~~r~-~~~~~~~~V~i~~~~s~~t~l~i-~~~DRpGLL~~Itr~l~~~gl~I~~a~i 221 (267)
... ...+ .|.+. ..-..-+-|..+. +...|++ ...+.+|++++|...|.++|++|.....
T Consensus 412 ~~~--~~~~---------~~~~~~~~~~~v~gIa~~~---~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~ 473 (587)
T PRK07431 412 EDS--QIEI---------NPTASGQDEPEVRGVALDR---NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQ 473 (587)
T ss_pred CCc--cccc---------CccccCCCCCcEEEEEccC---CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 100 0000 00000 0001112222222 3445554 3568899999999999999999998854
No 203
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.21 E-value=2.8 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=31.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
...+.|.-+||||.|+++++++++.|.||.+..-.
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 45899999999999999999999999999988543
No 204
>PRK11899 prephenate dehydratase; Provisional
Probab=86.13 E-value=15 Score=33.71 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=39.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 126 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~ 126 (267)
-|.+.+..+|+||.|+++...|++.|+|...-.-.-.++.. .-.|||.- +|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence 46666667899999999999999999999876665554432 34688876 565
No 205
>PRK09224 threonine dehydratase; Reviewed
Probab=86.03 E-value=39 Score=33.63 Aligned_cols=129 Identities=13% Similarity=0.197 Sum_probs=75.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 150 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~ 150 (267)
.....+.|.-+||||-|..++..|. +.||..-.-...+.....+|+.-.. .+. +.+.+.|.+.|++. ++..
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~ 396 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPV 396 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCe
Confidence 4567889999999999999999998 5777765544444444455554432 121 23477788886541 2110
Q ss_pred C--chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 151 E--SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 151 ~--~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
. ....+++. ...+.+.-+ .....+-..+.+.-+.|||-|.+...+|. -+-||+..+-.
T Consensus 397 ~~ls~ne~~k~----------h~r~~~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 397 VDLSDDELAKL----------HVRYMVGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred EECCCCHHHHH----------HHHhccCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 00111100 000000000 00011244577889999999999999777 77899888874
No 206
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.03 E-value=4 Score=30.26 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=35.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
++.+.-+||||-|.+++++|. +.||....-.-.+ +.+.-.+.+.-.+. .+..+.+.+.|..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence 466788999999999999999 5566544433222 33333333332331 2244555555543
No 207
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.72 E-value=7.8 Score=36.71 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 107 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~ 107 (267)
..+.|.-+||||.|.+++..+.+.|.||.+-...
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4889999999999999999999999999987554
No 208
>PRK14634 hypothetical protein; Provisional
Probab=84.00 E-value=15 Score=30.74 Aligned_cols=61 Identities=16% Similarity=0.015 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 84 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 84 pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
..+...+..++..+|+.+++..+...+...+-..+|... +|..+ +=+.++.+-+.|...|.
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~-~g~~v-~lddC~~vSr~is~~LD 67 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRS-SGSDV-SLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECC-CCCcc-cHHHHHHHHHHHHHHhc
Confidence 345666778899999999999999888776556666553 66334 24678888888877775
No 209
>PRK14636 hypothetical protein; Provisional
Probab=83.77 E-value=16 Score=31.34 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 82 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 82 DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
|.+.+...+..++..+|+.+++..+...+...+-..+|... +|..+ +=+.++++-+.|...|.
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~-~~ggV-~lDDC~~vSr~Is~~LD 65 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERP-DTRQL-VIEDCAALSRRLSDVFD 65 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECC-CCCCc-CHHHHHHHHHHHHHHhc
Confidence 34456677888999999999999998887666555666543 33334 34788888888888775
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=83.65 E-value=1.4 Score=43.76 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
.|+|.|.||.|+..+|..+|..+++++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 589999999999999999999999999999997764
No 211
>PRK14640 hypothetical protein; Provisional
Probab=83.61 E-value=17 Score=30.35 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+...+..++..+|+.+++..+...+....-..+|... +| + +-+.++.+-+.|..+|..
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~-~g--v-~lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGE-NG--V-SVENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence 4556778899999999999999888766556666543 55 3 347888888888887753
No 212
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.38 E-value=10 Score=30.22 Aligned_cols=49 Identities=4% Similarity=0.114 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEe
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITR 121 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~ 121 (267)
-+-+.+..+|+||-|+++...|..+|+|+.+-.-...+... .-.|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 35556666999999999999999999999886665553322 23577764
No 213
>PRK08198 threonine dehydratase; Provisional
Probab=82.78 E-value=7.9 Score=37.04 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=32.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
...+.|.-+|+||-|+++..++.+.|.||......
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 56899999999999999999999999999988764
No 214
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.77 E-value=11 Score=27.33 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=38.1
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
..+.||++++|..+|+++|++|...- + +. ..-.|-+.....-+.++..++|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 35779999999999999999999884 2 33 2234555433211444455677777665
No 215
>PLN02550 threonine dehydratase
Probab=82.13 E-value=63 Score=32.99 Aligned_cols=153 Identities=8% Similarity=0.090 Sum_probs=84.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC-
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP- 150 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~- 150 (267)
....+.|.-+||||-|.+++.+|... ||.+-.-.....+....++.-.. .+++..+.|.+.|++. +...
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~--g~~~~ 485 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESA--QLRTV 485 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHC--CCCeE
Confidence 34678999999999999999999986 77765554433333333443332 1356778888886652 1110
Q ss_pred Cc-hhHhhhccccCccCCCcccccc-cceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465 151 ES-SEQLAMGEAFGIKAPEKKLDVD-IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 228 (267)
Q Consensus 151 ~~-~~~la~~~~~~~~~~~r~~~~~-~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a 228 (267)
+. ...+++. +.+.+. ...+ + ..--.+.+.-+.|||-|.++..+|.. +-||+..+-...|+..
T Consensus 486 ~l~~~~~~~~---------~LR~v~g~ra~--~----~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~ 549 (591)
T PLN02550 486 NLTSNDLVKD---------HLRYLMGGRAI--V----KDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETG 549 (591)
T ss_pred eCCCChHHhh---------hhhheeccccc--c----CceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCC
Confidence 00 1112111 111111 1111 1 12456778899999999999998774 3456665554445554
Q ss_pred eeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 229 KDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 229 ~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
..+|.= -.+.+...+.|.+.|.
T Consensus 550 a~vlvG----i~v~~~e~~~l~~~l~ 571 (591)
T PLN02550 550 ANVLVG----IQVPPEEMQEFKSRAN 571 (591)
T ss_pred ccEEEE----EeeCHHHHHHHHHHHH
Confidence 444432 2222234455555553
No 216
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=81.99 E-value=13 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=30.5
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 190 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 190 ~l~i~~---~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
.+.+.+ .+.||++++|.++|.+.|++|....-.+. + ..-.|.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s-~-~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS-E-RNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-cEEEEEEe
Confidence 344544 47899999999999999999987754332 1 23345553
No 217
>PRK14647 hypothetical protein; Provisional
Probab=81.94 E-value=21 Score=29.95 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+-..+..++..+||.+++..+...+...+-..+|... .|-. =+.++.+-+.|.++|..
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~-~gvs---lddC~~vSr~is~~LD~ 67 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKE-GGVN---LDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCC-CCCC---HHHHHHHHHHHHHHHcc
Confidence 4445677899999999999999988766545666542 4533 47788888888887753
No 218
>PRK09084 aspartate kinase III; Validated
Probab=81.67 E-value=51 Score=32.20 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++...|+|.+. +.+|.+.++...|.+.|++|..-. +.. .--.|.|... +-. ......+.+.+.+.|.
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~-~~~----~~~~~~~~~~l~~el~ 373 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTT-GST----STGDTLLTQALLTELS 373 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEech-hhh----hhhhHHHHHHHHHHHh
Confidence 356788899765 689999999999999999998765 222 2234666542 100 0111222223222232
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCc
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNV 214 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl 214 (267)
. . ..+.++ .+...|.+.+. ++||+++++..+|.+.++
T Consensus 374 ~--~--------------------------~~i~~~---~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 374 Q--L--------------------------CRVEVE---EGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred c--C--------------------------CeEEEE---CCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1 0 011122 24667777776 789999999999987533
No 219
>PRK14645 hypothetical protein; Provisional
Probab=81.49 E-value=27 Score=29.29 Aligned_cols=61 Identities=23% Similarity=0.170 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 84 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 84 pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
..+-..+..++..+||.+++..+...+...+-..+|... +|..+ +=+.++++-+.|..+|.
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~-~~~~v-~lddC~~vSr~is~~LD 69 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRK-DEQPV-TVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECC-CCCCc-CHHHHHHHHHHHHHHhc
Confidence 346677788999999999999999887766545666542 34334 24678888888877775
No 220
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=81.34 E-value=24 Score=29.30 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+-..+..++..+|+.+++..+...+....-..+|... +|- +-+.++++-+.|..+|..
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~-~gv---~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKE-GGI---DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECC-CCC---CHHHHHHHHHHHHHHhcc
Confidence 4456678899999999999999987766545556542 453 347888888888887753
No 221
>PRK14639 hypothetical protein; Provisional
Probab=81.08 E-value=19 Score=29.70 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 90 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 90 i~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+-.++..+|+.+++..+...+...+-..+|... .| + +=+.++++-+.|.++|..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~g--v-~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKE-GG--V-NLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCC-CC--C-CHHHHHHHHHHHHHHhcc
Confidence 345788999999999999988776656666542 45 3 347888888888887753
No 222
>PRK14638 hypothetical protein; Provisional
Probab=80.66 E-value=25 Score=29.25 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+-..+..++..+|+.+++..+...+.+..-..+|... +|. + +-+.++++-+.|..+|..
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~-~G~-v-~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNP-VGY-V-SVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCC-c-CHHHHHHHHHHHHHHhcc
Confidence 4456677889999999999999888776656666543 453 3 247888888888887753
No 223
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.58 E-value=4.7 Score=38.58 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=39.4
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 72 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 72 ~~t~V~V~~~-DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
..+.+.+.-+ |+||-|+++...|...|+||.+-.+.....+.+- |+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence 3456666665 9999999999999999999999888555555555 88865
No 224
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=80.15 E-value=7.3 Score=33.07 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=46.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 144 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~ 144 (267)
.++.+.-.|.||.|.++++.|+..||||-+-.+.-+.+...--..+.- .| ++..++++.+.|...
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kL 69 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKL 69 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhh
Confidence 467888899999999999999999999999888666554332222222 23 234567777776553
No 225
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.14 E-value=16 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=26.8
Q ss_pred EEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEE
Q 024465 74 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 74 t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I 106 (267)
..|+|.| ++.||++.++..+|.+.|++|.--..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566666 48899999999999999999976544
No 226
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.88 E-value=20 Score=25.96 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHH
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRY 255 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~-~~~~L~~~L~~ 255 (267)
..++||++++|..+|+++|++|-..- + ++ ..-.|-|.. .....+. ..+.|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~-~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN-TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec-cccchhHHHHHHHHHHHHh
Confidence 46889999999999999999999884 2 22 233455533 2222222 22355555554
No 227
>PRK14637 hypothetical protein; Provisional
Probab=79.46 E-value=29 Score=28.93 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 81 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 81 ~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
+--.|....+..++.++|+.+++-.+...+....-..+|... +| + +-+.++.+-+.|..+|.
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~-~g--V-~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSA-GG--V-GLDDCARVHRILVPRLE 66 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECC-CC--C-CHHHHHHHHHHHHHHhc
Confidence 445688899999999999999999999988766545666542 45 3 34778888888777664
No 228
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.22 E-value=7.1 Score=38.97 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 112 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~ 112 (267)
..+..+.+...|+||.+..+..+|.+.++||-.-++.....+
T Consensus 450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g 491 (526)
T PRK13581 450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAG 491 (526)
T ss_pred CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCC
Confidence 355566677799999999999999999999999998876543
No 229
>PRK14630 hypothetical protein; Provisional
Probab=78.59 E-value=33 Score=28.34 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 82 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 82 DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
|.-.+-..+..++..+||.+++......+....-..+|... +|-. =+.++++-+.|...|.
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~-~gV~---idDC~~vSr~i~~~ld 66 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKK-DSFG---VDTLCDLHKMILLILE 66 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC-CCCC---HHHHHHHHHHHHHHhc
Confidence 45566777888999999999999998877766555666553 5533 3678888888766664
No 230
>PRK06349 homoserine dehydrogenase; Provisional
Probab=77.53 E-value=14 Score=35.92 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=39.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeC
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 122 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~ 122 (267)
...-|.+...|+||.|++++..|.+++++|..-......++....+++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 345788889999999999999999999999976655443344556677763
No 231
>PRK14633 hypothetical protein; Provisional
Probab=77.29 E-value=38 Score=28.14 Aligned_cols=56 Identities=18% Similarity=0.066 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
+-..+..++.++||.+++-.+...+...+ ..+|... +|-. -+.++.+-+.|..+|.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~-~Gv~---lddC~~vSr~i~~~LD 61 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHE-NGVS---VDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCC-CCCC---HHHHHHHHHHHHHHhc
Confidence 44567788999999999999988766434 4555432 5533 4778888888877775
No 232
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=77.27 E-value=26 Score=39.60 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=64.8
Q ss_pred CCCEEEEee--cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-----eeEEEEEEEeCCCCCCCCCh
Q 024465 59 PMPHVLIDQ--DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-----VKQTKFFITRLDTGRKVEDP 131 (267)
Q Consensus 59 ~~p~V~i~~--~~~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-----~~~d~F~I~~~~~g~~l~~~ 131 (267)
++..|.+.. ..+++...+.|+...++..|++++-+|..+|+.|.+..-+.... .++..|.+... .+..++..
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~ 551 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLD 551 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHH
Confidence 345566653 33456789999999999999999999999999999987655442 34688999886 56544444
Q ss_pred HHHHHHHHHHHHHhhc
Q 024465 132 DLLERIRLTIINNLLK 147 (267)
Q Consensus 132 ~~~erl~~~L~~~L~~ 147 (267)
+.++++++.+.++..+
T Consensus 552 ~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 552 DIRERFEEAFEAVWNG 567 (1528)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5667777777765543
No 233
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.11 E-value=29 Score=29.12 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 84 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 84 pGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
..+..-+-.++.++||.+++..+...+.+..-..+|... .|-. =+.++++-+.+...|.
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v~---lddC~~vSr~is~~LD 66 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGVT---LDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCCC---HHHHHHHHHHHHHHhc
Confidence 345666778899999999999999999655433455442 3333 3677888888777665
No 234
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=77.04 E-value=6.7 Score=35.74 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=37.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 114 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~ 114 (267)
...++++...|.||.+.+|+++|+..||||-+--|--.....+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L 118 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL 118 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence 3458899999999999999999999999999888866666554
No 235
>PRK14643 hypothetical protein; Provisional
Probab=76.49 E-value=37 Score=28.77 Aligned_cols=60 Identities=15% Similarity=0.024 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe--CCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 85 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR--LDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 85 GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~--~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.+-..+..++..+||.+++......+...+-..+|.+ .++|. + +=+.++.+-+.|.+.|.
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-v-tldDC~~vSr~is~~LD 71 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-L-DFDILIKANDLVSNKID 71 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-c-CHHHHHHHHHHHHHHhC
Confidence 3455667788999999999999998876654566643 11332 3 34678888888887775
No 236
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.17 E-value=6.5 Score=39.24 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 113 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~ 113 (267)
..+..+.+...|+||.+..+...|.++++||-.-++.....+-
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~ 491 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGG 491 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCC
Confidence 4455666777999999999999999999999998888766443
No 237
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=76.06 E-value=23 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEE
Q 024465 75 IVQLSFG---DRLGALIDTMNALKDLGLDVA 102 (267)
Q Consensus 75 ~V~V~~~---DRpGLL~di~~~L~~~~lnI~ 102 (267)
.|.|.+. +.||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5666664 899999999999999999996
No 238
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=75.89 E-value=37 Score=31.33 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=44.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..|.+.+..+|+||.|+++...|...|+|.-.-.-.-.+.+. .-.|||.- +|.. .+ ..+++.|++
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence 367777888899999999999999999998765554444433 34577765 4653 22 345555554
No 239
>PRK14631 hypothetical protein; Provisional
Probab=75.79 E-value=43 Score=28.64 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCC---------------CCCCCCChHHHHHHHHHHHHHhh
Q 024465 85 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLD---------------TGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 85 GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~---------------~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.+...+..++..+|+.+++..+...+...+-..+|.... ++..+ +=+.++++-+.|..+|.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gv-tiddC~~vSr~is~~LD 84 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGI-GVEDCVRVTQQVGAMLD 84 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCc-CHHHHHHHHHHHHHHhc
Confidence 355667788999999999999998877665445554210 01123 24678888888887775
No 240
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=75.41 E-value=8.4 Score=26.50 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=23.6
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEE
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEI 221 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i 221 (267)
..|+||.++++.++|.+.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368899999999999999999986643
No 241
>PRK14632 hypothetical protein; Provisional
Probab=75.34 E-value=39 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 86 ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 86 LL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
+-..+..++..+||.+++..+.. +...+-..+|... +|-. =+.++++-+.|.++|..
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~-~GV~---ldDC~~vSr~is~~LD~ 66 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGP-EGVT---IDQCAEVSRHVGLALEV 66 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECC-CCCC---HHHHHHHHHHHHHHhcc
Confidence 44556778899999999999875 4444445556442 5533 47888888888887753
No 242
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.95 E-value=25 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCccEE
Q 024465 190 LLYIETA---DRPGLLVEIMKIIADVNVDVE 217 (267)
Q Consensus 190 ~l~i~~~---DRpGLL~~Itr~l~~~gl~I~ 217 (267)
.|.+.+. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 3455554 789999999999999999995
No 243
>PRK12483 threonine dehydratase; Reviewed
Probab=74.86 E-value=97 Score=31.09 Aligned_cols=139 Identities=10% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHH-HHHHHHHHHHhhccC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYH 149 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~-erl~~~L~~~L~~~~ 149 (267)
+....+.|.-+||||-|.+++.+|... ||.+-.-..........++.-.. . +++.. +.|.+.|++. +..
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~-----~~~~~~~~i~~~l~~~--g~~ 412 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-H-----PRHDPRAQLLASLRAQ--GFP 412 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-C-----ChhhhHHHHHHHHHHC--CCC
Confidence 456788999999999999999999988 77765554433333444443332 1 23443 6777776541 111
Q ss_pred CC--chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe
Q 024465 150 PE--SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 227 (267)
Q Consensus 150 ~~--~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~ 227 (267)
.. ...++++. ...+.+.-+ ......--.+.+.-+.|||-|.++++.|-.. .||+...=.-.|..
T Consensus 413 ~~dlsdne~~k~----------h~r~~~g~~---~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~ 478 (521)
T PRK12483 413 VLDLTDDELAKL----------HIRHMVGGR---APLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAA 478 (521)
T ss_pred eEECCCCHHHHH----------HHHhccCCC---CCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCC
Confidence 10 00111100 000000000 0001124467778899999999999999852 34444443333444
Q ss_pred eeeEEE
Q 024465 228 AKDKFH 233 (267)
Q Consensus 228 a~d~F~ 233 (267)
...+|.
T Consensus 479 ~a~v~v 484 (521)
T PRK12483 479 DGRVLA 484 (521)
T ss_pred ceEEEE
Confidence 444543
No 244
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=74.08 E-value=3.9 Score=37.23 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCee
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 228 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a 228 (267)
..-+|.+--.|-||+|++|+-+|+..|.||.+.-+--...++
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~ 117 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKA 117 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhh
Confidence 356777888899999999999999999999998875433333
No 245
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=73.97 E-value=21 Score=25.76 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
-.||++++|.++|+++|++|...-. ++ ..-.|-+.. ..+.++..+.|.+.|..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--ENAEDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--hhcChHHHHHHHHHHHH
Confidence 4599999999999999999998842 33 222444432 23333455677777665
No 246
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=73.96 E-value=32 Score=33.19 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=44.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T-~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.....+.+.-+||||-|.+++..+...+.||.+-+-.. .+.......+.-.. .+++..++|.+.|++
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL------NDKEDFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 56678899999999999999997778888999665542 22222333333221 124666777777654
No 247
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=73.00 E-value=26 Score=23.68 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 236 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d 236 (267)
.+++|+.++|.++|.++|+++.... | +. ..=.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4679999999999999999999883 3 33 334666643
No 248
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.48 E-value=14 Score=24.07 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=29.3
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEE
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 235 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~ 235 (267)
..|.||.+.++.+.|.++|++|........+ +...-.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 4788999999999999999999876543212 2233356663
No 249
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=71.82 E-value=7.6 Score=32.92 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=26.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEE
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGT 105 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~ 105 (267)
+-.++.....+.||.++.++++|++.|++|..+-
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence 3334444457889999999999999999999753
No 250
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=71.51 E-value=73 Score=30.66 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=38.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEEeCCCCC
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 126 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~~~~~g~ 126 (267)
-+-+.+..+|+||.|+++-..|+..|+|...-.-.-.+.. ..-.|||.- +|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC
Confidence 4555566689999999999999999999987665544443 234588866 464
No 251
>PRK14646 hypothetical protein; Provisional
Probab=71.28 E-value=47 Score=27.80 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 200 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 200 GLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
-+..-+..++.+.|+.+...++...|....-..||.. +|..++-..|+.+-++|-.+|+..+.-.++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y 76 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSY 76 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCe
Confidence 4556778889999999999999998887766777754 5667887889999999999998655444554
No 252
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=71.00 E-value=7.1 Score=33.10 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=37.2
Q ss_pred EEEEE--eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeee-EEEEEeCCCCCChHHHHHHH
Q 024465 190 LLYIE--TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVLV 250 (267)
Q Consensus 190 ~l~i~--~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d-~F~v~d~G~~l~~~~~~~L~ 250 (267)
+|++. -.+.||+|+.++..++++||+|..+-..- .+-..+ ..+|- .-+|+......+|+
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~d-pe~~~e~~l~IV-te~~iP~~li~el~ 156 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISED-PELQEEPKLTIV-TERPIPGDLIDELK 156 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCC-cccCCCceEEEE-EeccCCHHHHHHHh
Confidence 45554 46679999999999999999998876422 212222 22221 34566665555554
No 253
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=70.57 E-value=10 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=22.1
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEI 221 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i 221 (267)
+.+|.+.++.++|.+++++|.....
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 4899999999999999999977653
No 254
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=70.53 E-value=1.5e+02 Score=31.45 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
++.+.|+|.+. +.||.+.++..+|.+.|++|..-...+.. ..-.|.+.. ..++++.+.|.. +..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~--~sis~~i~~----------~~~~~~~~~l~~-~~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDR--QLLQLAYTS----------EVADSALKLLDD-AAL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCC--cEEEEEEeH----------HHHHHHHHHHHh-hcC
Confidence 57778888875 78899999999999999999766533222 222244432 122333333322 110
Q ss_pred cCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccEEEE
Q 024465 148 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 219 (267)
Q Consensus 148 ~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a 219 (267)
. ..+.+++ +...|.+.+. .++|+..++..+|.+.|+++...
T Consensus 382 --~--------------------------~~i~v~~---~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 --P--------------------------GELKLRE---GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred --C--------------------------CcEEEeC---CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0 1122222 4677778775 68999999999999999988443
No 255
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.10 E-value=31 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
++||+++++.++|++.|++|....-++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 689999999999999999998775444
No 256
>PRK08526 threonine dehydratase; Provisional
Probab=69.82 E-value=36 Score=32.85 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC----eeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS----VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~----~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
+....+.|.-+||||-|.+++..+.+.+.||.+-.-..... +........+. .+++..++|.+.|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999877655333 22333333221 135677777777543
No 257
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=68.92 E-value=9.5 Score=31.44 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=45.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE-ecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~-T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~ 254 (267)
+-+.|.+.-.||.|.|+++-.++++.++||....=+ ...++|.-+..+.-++..- ....|.+.|.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~---~V~~ii~kl~ 136 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEK---DVDKIIEKLR 136 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhh---hHHHHHHHHh
Confidence 467889999999999999999999999999877632 2346666666663332211 3345555544
No 258
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=68.75 E-value=87 Score=33.30 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 70 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 70 ~~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
.++.+.|+|.+ .+.+|.++++...|.+.|++|..-. +.. .--+|.+... . .....+.++.+... |.
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--sse--~sis~~i~~~--~-~~~~~~~~~~l~~~----l~ 387 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SSE--TNVTVSLDPS--E-NLVNTDVLAALSAD----LS 387 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cCC--CEEEEEEccc--c-ccchHHHHHHHHHH----Hh
Confidence 35678888864 4689999999999999999997652 322 2223555432 1 11011222322222 21
Q ss_pred ccCCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCccE
Q 024465 147 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDV 216 (267)
Q Consensus 147 ~~~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~---DRpGLL~~Itr~l~~~gl~I 216 (267)
. . ..+.+.+ +..+|.|.+. .+||+++++..+|.+.|+++
T Consensus 388 ~--~--------------------------~~i~~~~---~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 388 Q--I--------------------------CRVKIIV---PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred h--c--------------------------CcEEEeC---CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1 0 0011221 3567777775 78999999999999987644
No 259
>PRK08526 threonine dehydratase; Provisional
Probab=68.44 E-value=20 Score=34.60 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=44.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCe-----eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-----AKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~-----a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
....+.+.-+||||-|.++++++.+.+.||....-...... +.-.+-+.-.| .+..++|.+.|..
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~----~~~~~~~~~~l~~ 394 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKG----KEHQEEIRKILTE 394 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 36789999999999999999999999999998876443222 22222221132 2366777777653
No 260
>PRK14634 hypothetical protein; Provisional
Probab=68.15 E-value=52 Score=27.51 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 200 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 200 GLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
-+-.-+..++.+.|+.+...++...|....-..||.. .|..++-..|+.+-++|-.+|+..+.-.++|
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y 76 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAY 76 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCe
Confidence 4555677788899999999999888776666677755 7767888889999999999998554433444
No 261
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=67.46 E-value=37 Score=27.57 Aligned_cols=53 Identities=28% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 90 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 90 i~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
+..++..+|+.+++..+...++...-..+|... .| + +=+.++++-+.|...|.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~-~g--v-~lddc~~~sr~i~~~LD 54 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKD-GG--V-SLDDCEKVSRAISALLD 54 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-S-S------HHHHHHHHHHHGGGTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeC-CC--C-CHHHHHHHHHHHHHHHc
Confidence 456788999999999999999887544555442 45 3 34677777777666554
No 262
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.87 E-value=37 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=27.5
Q ss_pred EEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 024465 74 TIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 108 (267)
Q Consensus 74 t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T 108 (267)
..|.+.+. ++||.+.++..+|.+.|++|.--...+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35566654 789999999999999999997655433
No 263
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=66.33 E-value=45 Score=23.79 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~ 255 (267)
.+.||++++|..+|+++|+++...- + ++ ..-.|.+.......++...+.|.+.|..
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 5679999999999999999996663 3 22 2234444332211112244566666654
No 264
>PRK11898 prephenate dehydratase; Provisional
Probab=65.72 E-value=1.1e+02 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=36.3
Q ss_pred eEEEEEEeCC-CccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465 73 ATIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 126 (267)
Q Consensus 73 ~t~V~V~~~D-RpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~ 126 (267)
-+.+.+..++ +||.|+++...|.+.|+|+.+-.-.-..+.. .-.|||.- +|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~--eg~ 249 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV--EGH 249 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE--Ecc
Confidence 3555555555 6999999999999999999876655443322 34577765 454
No 265
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=64.45 E-value=57 Score=24.54 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=41.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEec--CCeeeeEEEEEeCCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAAL 241 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~--g~~a~d~F~v~d~G~~l 241 (267)
.+.+.+...++|+.|.+|-++.+-.|..|-....++. ++++---|.| ++..++
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s~R~~ 57 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DSDRSV 57 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cCCCCh
Confidence 5788999999999999999999999999999888776 5555545555 444443
No 266
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.60 E-value=42 Score=22.50 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
+.+|+++++.+.|++.|++|....-.+.+ ..-.|.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 67999999999999999999877654422 22246663
No 267
>PRK14645 hypothetical protein; Provisional
Probab=63.44 E-value=73 Score=26.64 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 199 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 199 pGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
.-+-.-+..++.+.|+.+...++...|....-..||.. .|..++-..|+.+-++|-..|+..+.-...|
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y 78 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEY 78 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCce
Confidence 34666778899999999999999887766555666654 5667888889999999999998554333333
No 268
>PRK14644 hypothetical protein; Provisional
Probab=63.41 E-value=82 Score=25.78 Aligned_cols=49 Identities=12% Similarity=0.115 Sum_probs=35.7
Q ss_pred HHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhh
Q 024465 91 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 146 (267)
Q Consensus 91 ~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~ 146 (267)
..++..+|+.+++......++..+-..+|.. . +=+.++++-+.|.++|.
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~LrV~Idk--~-----~iddC~~vSr~is~~LD 53 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLEVILNS--R-----DLKDIEELTKEISDFID 53 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEEEEECC--C-----CHHHHHHHHHHHHHHhc
Confidence 3578899999999999998877654555632 1 23677888888777664
No 269
>PRK08639 threonine dehydratase; Validated
Probab=63.22 E-value=63 Score=31.18 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=43.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE-cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T-~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
.....+.+.-+||||-|.+++..+...+.||.+-+-.. .+......+..-+ ..+++..++|.+.|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 55678899999999999999997777777998765432 1212222222222 1124566777777654
No 270
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=62.83 E-value=67 Score=31.95 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhccCC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 150 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~~~ 150 (267)
+....+.|.-+||||-|..++.+|.. .||.+-.-...+.....+|+.-.. .+++.++.|.+.|++. ++..
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~~--Gy~~ 392 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLNDG--GYSV 392 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHHc--CCCe
Confidence 46678899999999999999999997 466655444444444455554432 1346788888887651 2110
Q ss_pred C--chhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 151 E--SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 151 ~--~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
. ....+++. ...+.+.-+ .....+--...+.-+-|||-|.+.-.+|. -+-||+..+-.-
T Consensus 393 ~dls~ne~~k~----------h~r~~~g~~---~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr~ 453 (499)
T TIGR01124 393 VDLTDDELAKL----------HVRYMVGGR---PPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYRN 453 (499)
T ss_pred EECCCCHHHHH----------HHHhccCCC---CCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEec
Confidence 0 01111110 000000000 00011234566779999999988877443 345777777533
No 271
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.52 E-value=15 Score=23.65 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEEeCC---CccHHHHHHHHHHHCCceEEEEEE
Q 024465 75 IVQLSFGD---RLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 75 ~V~V~~~D---RpGLL~di~~~L~~~~lnI~~A~I 106 (267)
.|+|.+.+ .+|.+.++..+|.+.+++|..-..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35555554 899999999999999999976544
No 272
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=62.46 E-value=47 Score=23.22 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.1
Q ss_pred cccHHHHHHHHHHhCCccEEEEEEEecCCeeeeE-EEE
Q 024465 198 RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHV 234 (267)
Q Consensus 198 RpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~-F~v 234 (267)
+||+++++.++|.+.|+++.... .|....+. |.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~---~~~s~~~is~~V 48 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFVV 48 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEE---ecCCeeEEEEEE
Confidence 68999999999999999997665 44444444 555
No 273
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.30 E-value=27 Score=25.82 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCc
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD 263 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~ 263 (267)
....|++..+-.+|.++|+++++.-. | .|.|-|.=+...++++..+.|.+.|+..+...+.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PS---G---ID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i~ 73 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPS---G---IDDISIIIRDNQLTDEKEQKILAEIKEELHPDEIE 73 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecC---C---CccEEEEEEccccchhhHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999998752 2 33344543566676766678888888877765443
No 274
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.48 E-value=41 Score=21.71 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=29.2
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-eEEEEEEE
Q 024465 80 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFIT 120 (267)
Q Consensus 80 ~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~-~~d~F~I~ 120 (267)
.+|.||.+.++...|.+.|++|........+++ ..-.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 478999999999999999999976555332322 22345554
No 275
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.59 E-value=53 Score=22.68 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=26.8
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeE-EEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHV 234 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~-F~v 234 (267)
..+|++.++.++|++.|++|.... +|....+. |.|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~---~g~s~~sis~~v 47 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMIS---QGASKVNISLIV 47 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE---ecCccceEEEEE
Confidence 358999999999999999998766 44444444 555
No 276
>PRK14636 hypothetical protein; Provisional
Probab=60.55 E-value=77 Score=27.14 Aligned_cols=69 Identities=12% Similarity=-0.009 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 199 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 199 pGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-+..-+..++.+.|+.+...++...+....-..||.+ .|..++-..|+.+-++|-..|+..+.-.++|
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y 74 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAY 74 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCe
Confidence 34566778889999999999999888776666667754 4556887789999999999998554434444
No 277
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.24 E-value=49 Score=22.15 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.8
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 024465 75 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 108 (267)
Q Consensus 75 ~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T 108 (267)
.|.|.+. +.+|++.++...|.+.|++|.--....
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999997655433
No 278
>PLN02317 arogenate dehydratase
Probab=60.21 E-value=1.4e+02 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=29.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 109 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~ 109 (267)
|-|.+.-+|+||.|+++..+|+..|+|+.+-.-.-.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 566666689999999999999999999987665443
No 279
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=60.07 E-value=51 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEE
Q 024465 80 FGDRLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 80 ~~DRpGLL~di~~~L~~~~lnI~~A~I 106 (267)
.+|+||.+.++...|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 478999999999999999999985443
No 280
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=59.89 E-value=60 Score=23.09 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=36.9
Q ss_pred EEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 75 IVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 75 ~V~V~---~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
.|+|. ..+.||++.++..+|.+.|++|..-. +.+ .--.|.|... ....+.+.+..|.+.|+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~---~~~~~~~~~~~~~~~l~ 66 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT---KNLSDQLLLDALVKDLS 66 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch---hhccchHHHHHHHHHHH
Confidence 45553 36789999999999999999996542 222 2234666542 21111234555555543
No 281
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.86 E-value=48 Score=24.41 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.6
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 236 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d 236 (267)
..+.||++++|..+|+++|++|...- + ++ ..=.|-+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 35789999999999999999999884 2 33 333555544
No 282
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=59.67 E-value=60 Score=22.94 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEEEEecCCeeee-EEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 261 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d-~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~ 261 (267)
.+.+|+++++.++|++.|+++....-++.+ .+ .|.+.+. . . ....+.|.+++-..++..+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~---~~isf~v~~~-d-~-~~~~~~l~~~~~~~~~~~~ 72 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQASSE---HSISFVVDES-D-A-DKALEALEEEFALEIKAGL 72 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCc---ceEEEEEeHH-H-H-HHHHHHHHHHHHhhhhhCc
Confidence 367999999999999999999877654333 23 3444331 1 1 1134556666555554443
No 283
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=59.51 E-value=23 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.2
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEI 221 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i 221 (267)
+++|+++++...|++.++++.....
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 7899999999999999999976643
No 284
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=59.08 E-value=49 Score=32.71 Aligned_cols=51 Identities=8% Similarity=0.165 Sum_probs=37.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-E-EEEEEEe
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-Q-TKFFITR 121 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~-d~F~I~~ 121 (267)
.+-+.|.+..+|+||-|+++-.+|...|+|+.+-.-.-..... . -.|+|.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3445666666999999999999999999999886655444332 2 3578865
No 285
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.13 E-value=18 Score=26.23 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=31.6
Q ss_pred EEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 74 TIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 74 t~V~V~---~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
+.|+|. ..++||+++++...|.+.|+||-.-. + +. .--.|.|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 345552 57889999999999999999998764 2 22 323466654
No 286
>PRK06635 aspartate kinase; Reviewed
Probab=57.32 E-value=67 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.6
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEE
Q 024465 71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKG 104 (267)
Q Consensus 71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A 104 (267)
++...|.|.+ +++||.++++..+|.+.|+||...
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 4667788876 699999999999999999999874
No 287
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=56.96 E-value=11 Score=36.42 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecC
Q 024465 190 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 190 ~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
.|+|.|.||.||..++-..|...++++...+|+..|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 578999999999999999999999999999996655
No 288
>PRK00907 hypothetical protein; Provisional
Probab=56.39 E-value=61 Score=24.83 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=44.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~--T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+-+.|.+.++++|...|..++..+.-.....++. ....|.+..+.+.-. +.+.++++.|-+.|.
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~-----ats~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR-----AESREQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 7899999999999999999999887765555553 233344433333321 234678888888754
No 289
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=56.05 E-value=93 Score=30.42 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=67.1
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhcc
Q 024465 72 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 148 (267)
Q Consensus 72 ~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~~ 148 (267)
+-+++.|.+. -+.|.|+.+..+|.++|+.|- +.++.+.-+ ..-+.. .++ +-.+.|++.|.++.+.
T Consensus 392 nv~mldI~Str~l~q~GFLAkvFti~ek~~isVD---vvaTSEV~i-SltL~~----~~~---~sreliq~~l~~a~ee- 459 (559)
T KOG0456|consen 392 NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVD---VVATSEVSI-SLTLDP----SKL---DSRELIQGELDQAVEE- 459 (559)
T ss_pred cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEE---EEEeeeEEE-EEecCh----hhh---hhHHHHHhhHHHHHHH-
Confidence 4556666543 357899999999999999764 222222111 111111 112 2234455555544432
Q ss_pred CCCchhHhhhccccCccCCCcccccccceeEEeccCCCCeEEEEEEe--CCcccHHHHHHHHHHhCCccEEEEEEEecCC
Q 024465 149 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGL 226 (267)
Q Consensus 149 ~~~~~~~la~~~~~~~~~~~r~~~~~~~~~V~i~~~~s~~t~l~i~~--~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~ 226 (267)
-+.++ +-+-......|.+.+ ....|++-.+-.+|+++|+||+... .|.
T Consensus 460 ----L~ki~-----------------------~vdll~~~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqMIS---QGA 509 (559)
T KOG0456|consen 460 ----LEKIA-----------------------VVDLLKGRSIISLIGNVQNSSGILERMFCVLAENGINVQMIS---QGA 509 (559)
T ss_pred ----HHHhh-----------------------hhhhhccchHHhhhhhhhhhhHHHHHHHHHHHhcCcceeeec---ccc
Confidence 01111 000011233344433 3558999999999999999998765 777
Q ss_pred eeeeEEEE
Q 024465 227 VAKDKFHV 234 (267)
Q Consensus 227 ~a~d~F~v 234 (267)
.-.|.=.|
T Consensus 510 skvNIS~i 517 (559)
T KOG0456|consen 510 SKVNISCI 517 (559)
T ss_pred ccceEEEE
Confidence 76664444
No 290
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=55.92 E-value=1.2e+02 Score=25.17 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+..++...|+.+...++...|....-..+|...| .++-..|+.+-+++..+|+..+.-.++|
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~-gv~iddc~~~Sr~is~~LD~~d~i~~~Y 74 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEG-GIDLDDCEEVSRQISAVLDVEDPIPGAY 74 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCC-CCCHHHHHHHHHHHHHHhccccCCCCCe
Confidence 44556788899999999999998877665556664322 2666689999999999998554333444
No 291
>PRK02047 hypothetical protein; Provisional
Probab=55.81 E-value=69 Score=24.28 Aligned_cols=65 Identities=8% Similarity=-0.024 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T--~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
.+.+.|.+.+.+++...+..++..+...+..+.+.+ ...|.+..+.|+-. +.+++++..|-+.|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~-----v~s~eq~~~iY~~L~ 82 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR-----ATSREQLDNIYRALT 82 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 478999999999999999999999877766666644 33455655665542 445677777777744
No 292
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=54.63 E-value=49 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=38.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eeEEEEEEE
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFIT 120 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~--~~~d~F~I~ 120 (267)
...+.+..+++|++|.++-++....|+.|..-..++-.+ .+--.|.|.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 358899999999999999999999999999888877643 333446663
No 293
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=54.48 E-value=1e+02 Score=29.70 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=41.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE-ecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~-T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~ 255 (267)
....+.+.-+||||-|.++++.+...+-||...+-. ..+.....++..-. .+ .+..+.|.++|..
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 367899999999999999999666666699966654 33322222222222 33 2355666666653
No 294
>PRK14639 hypothetical protein; Provisional
Probab=54.37 E-value=96 Score=25.44 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred HHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 205 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 205 Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.++.+.|+.+...++...|....-..+|...|. ++-..|+.+-++|-.+|+..+.-.++|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~~d~i~~~Y 64 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDVEPPVSGEY 64 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhccccccCCCe
Confidence 34578899999999999998877766777754333 777789999999999998665444444
No 295
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.42 E-value=72 Score=21.99 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=30.7
Q ss_pred EEEEEeC--CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 75 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 75 ~V~V~~~--DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
.|.+.+. ..+|++.++..+|.+.|++|.-....+.+... .|.|..
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~~ 49 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVND 49 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEeH
Confidence 4555554 46899999999999999999765554443222 255543
No 296
>PRK14638 hypothetical protein; Provisional
Probab=53.10 E-value=1.3e+02 Score=24.92 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+..++.+.|+.+...++...|..-.-..+|...+..++-..|+.+-+.|-.+|+..+.-.++|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y 76 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSY 76 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCce
Confidence 3345677889999999999999887765556667444444777789999999999998554333444
No 297
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=52.08 E-value=1.1e+02 Score=30.19 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=38.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 126 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~ 126 (267)
-+-|.+..+|+||-|+++..+|.++|+|+.+-.-.-..... .-.|+|.- +|.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~--eg~ 68 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF--DEA 68 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE--ecC
Confidence 45666666999999999999999999999876554433322 23588875 454
No 298
>PRK12483 threonine dehydratase; Reviewed
Probab=51.98 E-value=72 Score=32.00 Aligned_cols=45 Identities=7% Similarity=0.159 Sum_probs=33.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 234 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v 234 (267)
...+.+.-+||||-|.+++++|.+. ||...+-.....+...++..
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ 389 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVG 389 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEE
Confidence 6678899999999999999999988 88777665444333334433
No 299
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=51.56 E-value=1.1e+02 Score=33.25 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCCEEEEeecCCC-CeEEEEE---EeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCee-EEEEEEEeCCCCC
Q 024465 59 PMPHVLIDQDSNS-DATIVQL---SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR 126 (267)
Q Consensus 59 ~~p~V~i~~~~~~-~~t~V~V---~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~-~d~F~I~~~~~g~ 126 (267)
..|.+.+...... ....|.+ .-+-..|+|+.++..+.-+|+.+..+.+-+..++. +-+|||+.. .+.
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~-~~~ 286 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL-TAD 286 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC-CCC
Confidence 4688888755422 3224444 34566789999999999999999999999998875 589999986 443
No 300
>PRK14637 hypothetical protein; Provisional
Probab=51.47 E-value=1.4e+02 Score=24.81 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 024465 199 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP 260 (267)
Q Consensus 199 pGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~ 260 (267)
-|.-..+..++.+.|+.+...++...|..-.-..+|...|. ++-..|+++-++|-.+|+.+
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g-V~iddC~~vSr~Is~~LD~~ 68 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG-VGLDDCARVHRILVPRLEAL 68 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhccc
Confidence 57788899999999999999999988876555566643332 77778999999998888753
No 301
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=51.18 E-value=42 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeE
Q 024465 70 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 114 (267)
Q Consensus 70 ~~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~ 114 (267)
...-..+.+.-.||-|.|+++-.++++.++||+.-.-+---++.+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~A 113 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRA 113 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCcee
Confidence 344567788999999999999999999999999877665555554
No 302
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.18 E-value=72 Score=21.34 Aligned_cols=33 Identities=6% Similarity=0.209 Sum_probs=26.3
Q ss_pred EEEEeC---CcccHHHHHHHHHHhCCccEEEEEEEe
Q 024465 191 LYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 223 (267)
Q Consensus 191 l~i~~~---DRpGLL~~Itr~l~~~gl~I~~a~i~T 223 (267)
+.+.+. ++||+++++...|++.|+++......+
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444443 679999999999999999998776433
No 303
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=50.64 E-value=74 Score=21.32 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 81 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 81 ~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
.+++|+..++..+|.+.|++|..-. +.. .--.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t~~--~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--TSE--NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--cCC--CEEEEEEeh
Confidence 4789999999999999999998763 322 223466654
No 304
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.42 E-value=87 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.9
Q ss_pred EEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEE
Q 024465 74 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVN 107 (267)
Q Consensus 74 t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~ 107 (267)
+.|+|.+ .+.+|++.++...|.+.+++|..-...
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3566643 478999999999999999999866554
No 305
>PRK08841 aspartate kinase; Validated
Probab=49.91 E-value=2.4e+02 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 258 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~ 258 (267)
+...+.+.+...||+++++.++|.+.|++|.... + ++ ..-.|.|. ....+...++|+..+-
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s~-~~is~vv~-------~~~~~~av~~lH~~f~ 377 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-EP-QSSMLVLD-------PANVDRAANILHKTYV 377 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-CC-cEEEEEEe-------HHHHHHHHHHHHHHHc
Confidence 4678889998899999999999999999995443 2 22 33345552 2234555666666654
No 306
>PRK08639 threonine dehydratase; Validated
Probab=49.90 E-value=71 Score=30.83 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=40.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE-ecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~-T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~ 255 (267)
....+.+.-+||||-|.++.+.+...+-||...+-. ..+.....++..-. .| .+..++|.+.|..
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD----AEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 367899999999999999999555555599877643 12222222222212 32 2355667776654
No 307
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=49.83 E-value=1.1e+02 Score=29.18 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEE
Q 024465 70 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 103 (267)
Q Consensus 70 ~~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~ 103 (267)
+++.+.|.|.+. ++||.++++..+|.+.|+||..
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 357778888874 7999999999999999999984
No 308
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.50 E-value=97 Score=22.31 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=37.6
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHH
Q 024465 80 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 143 (267)
Q Consensus 80 ~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~ 143 (267)
..+.||++.++..+|.+.|+||..-. + +. .--.|.+... ...+. .+.++.|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccc-hHHHHHHHHHHHh
Confidence 35789999999999999999998763 2 22 2234667653 21132 2356667776554
No 309
>PRK14640 hypothetical protein; Provisional
Probab=49.43 E-value=1.5e+02 Score=24.56 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+..-+..++.+.|+.+...++...|..-.-..||.. .| ++-..|+.+-++|-.+|+..+--.+.|
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~lddC~~vSr~is~~LD~~d~i~~~Y 73 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSVENCAEVSHQVGAIMDVEDPITEEY 73 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhcccccCCCCe
Confidence 445677788999999999999887766555666644 45 777789999999999998544333333
No 310
>PRK00341 hypothetical protein; Provisional
Probab=49.14 E-value=96 Score=23.56 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=44.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T--~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
+.+.|.+.+.+++...|..++..+. .+....+.+ ...|.+..+.|.-. +.+++++..|-+.|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~-----~~s~~q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV-----ATDEDQLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 7899999999999999999998776 665565543 34455555555432 335677777777754
No 311
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.13 E-value=81 Score=21.06 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEE
Q 024465 75 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNT 108 (267)
Q Consensus 75 ~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T 108 (267)
.|.+.|. ++||++.++...|.+.|++|.-.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566654 789999999999999999997665433
No 312
>PRK08210 aspartate kinase I; Reviewed
Probab=48.02 E-value=1e+02 Score=29.42 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEE
Q 024465 71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 103 (267)
Q Consensus 71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~ 103 (267)
++...|.|.+. ++||.+.++..+|.+.|++|..
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 57778888875 8999999999999999999974
No 313
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.39 E-value=34 Score=34.04 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 024465 75 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 110 (267)
Q Consensus 75 ~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~ 110 (267)
.+.|.|.||.|+..++...|...++|+..-.|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999986653
No 314
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=43.55 E-value=97 Score=22.83 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=37.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCC
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 128 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l 128 (267)
.+...+.+.+.| +..+...|..+|+++........+.+ ..|+++++ +|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DP-dG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADP-EGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECC-CCCEE
Confidence 456678888888 67788889999999987654332223 46999997 88764
No 315
>PRK14641 hypothetical protein; Provisional
Probab=42.81 E-value=2.1e+02 Score=24.38 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHHHHhhc
Q 024465 95 KDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 95 ~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
..+|+.+++..+...+....-..+|.. +.|- +-+.++++-+.|.++|..
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~-~~gv---~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDA-DTGI---RIDQCAFFSRRIRERLEE 68 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeC-CCCC---CHHHHHHHHHHHHHHhCc
Confidence 489999999999998876654556643 2443 347888888888887763
No 316
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=41.64 E-value=28 Score=24.53 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEE
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 235 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~ 235 (267)
+.||.+++|.+.|+++|++|-..... .. .-.|.+.
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~ 45 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVD 45 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEc
Confidence 56999999999999999999998332 12 3456663
No 317
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=40.65 E-value=1.3e+02 Score=24.34 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=39.5
Q ss_pred HHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 024465 205 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP 260 (267)
Q Consensus 205 Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~ 260 (267)
|..++.+.|+.+...++...++...-..+|..++. ++-..|+.+-+++...|+..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~~ 56 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDAE 56 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTTS
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999877555555544443 87779999999999999873
No 318
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.21 E-value=1.1e+02 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.554 Sum_probs=22.2
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEE
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
.+.||++.++...|.++|+++....
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEE
Confidence 3679999999999999999997765
No 319
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.18 E-value=1.6e+02 Score=29.21 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=41.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 255 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~ 255 (267)
...+.+.-+||||-|.+++++|.. -||...+-.-.+.....+|..-. .| .+.+++|.+.|..
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~----~~~~~~l~~~L~~ 387 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN----PQERQEILARLND 387 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 668889999999999999999997 47766665433333344444333 32 2356677776643
No 320
>PRK09224 threonine dehydratase; Reviewed
Probab=39.01 E-value=1.9e+02 Score=28.72 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=39.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 254 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~ 254 (267)
...+.+.-+||||-|.+++++|. +-||...+-.-.+.....+|..-. .+.. ...+.|.+.|.
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~---~~~~~i~~~L~ 390 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ---EERAEIIAQLR 390 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh---hHHHHHHHHHH
Confidence 66888999999999999999999 577776665433433344444333 3221 12455555553
No 321
>PRK14635 hypothetical protein; Provisional
Probab=38.50 E-value=2.4e+02 Score=23.66 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCC--CCCCCCChHHHHHHHHHHHHHhhc
Q 024465 85 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLD--TGRKVEDPDLLERIRLTIINNLLK 147 (267)
Q Consensus 85 GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~--~g~~l~~~~~~erl~~~L~~~L~~ 147 (267)
-+-..+..++ ..|+.+++..+...+...+-..+|.... +|. + +=+.++.+-+.|.++|..
T Consensus 7 ~i~~l~~~~~-~~g~el~dve~~~~~~~~~lrV~ID~~~~~~~g-v-~lddC~~vSr~is~~LD~ 68 (162)
T PRK14635 7 EISEILDRVL-ALPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGS-V-SLLECEQVSRKLKEELER 68 (162)
T ss_pred HHHHHHHHHH-CCCCEEEEEEEEecCCCcEEEEEEecCCCCCCC-c-CHHHHHHHHHHHHHHhCC
Confidence 3444455566 4699999999999887665455554210 122 3 347888888888887753
No 322
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=36.95 E-value=1.2e+02 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.527 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHhCCccEEEEE
Q 024465 196 ADRPGLLVEIMKIIADVNVDVESAE 220 (267)
Q Consensus 196 ~DRpGLL~~Itr~l~~~gl~I~~a~ 220 (267)
.+.+|++.++.+.|.+.|+++....
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4679999999999999999997765
No 323
>PRK04998 hypothetical protein; Provisional
Probab=36.30 E-value=1.8e+02 Score=21.69 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=43.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 73 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 73 ~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
.+.+.|.++..+++...|..++..+--.-..-++.....|.+-.+.|+-. +.+++++..|-+.|.
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~-----v~s~eq~~~iY~~L~ 79 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITIT-----ATSIEQVETLYEELA 79 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 47899999999999999999998763221112233445566656666542 445677777777643
No 324
>PLN02550 threonine dehydratase
Probab=36.19 E-value=2.1e+02 Score=29.31 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=27.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
...+.+.-+||||-|.+++++|.+. ||...+-.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~ 449 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYR 449 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEE
Confidence 4678899999999999999999986 77666543
No 325
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=36.14 E-value=1.2e+02 Score=19.55 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.9
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceEEEEEE
Q 024465 75 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 75 ~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I 106 (267)
.|+|.+. +++|++.++...|.+.+++|..-..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999976544
No 326
>PRK14647 hypothetical protein; Provisional
Probab=35.26 E-value=2.7e+02 Score=23.26 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+..++.+.|+.+...++...|....-..||...| .++-..|+.+-++|-..|+..+.=.+.|
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~-gvslddC~~vSr~is~~LD~~d~i~~~Y 75 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEG-GVNLDDCAEVSRELSEILDVEDFIPERY 75 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHHHcccccCCCCe
Confidence 33456677889999999999998887655556664322 2666689999999999998544323333
No 327
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=31.68 E-value=3.1e+02 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 024465 71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 105 (267)
Q Consensus 71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~ 105 (267)
++.+.|+|.+ ++.||+++++..+|.+.|+||..-.
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 5777888865 4889999999999999999997654
No 328
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.26 E-value=1.7e+02 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=21.7
Q ss_pred EEEEEeC---CCccHHHHHHHHHHHCCceE
Q 024465 75 IVQLSFG---DRLGALIDTMNALKDLGLDV 101 (267)
Q Consensus 75 ~V~V~~~---DRpGLL~di~~~L~~~~lnI 101 (267)
.|.+.+. +.||++.++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 78999999999999987666
No 329
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=31.21 E-value=1.9e+02 Score=20.42 Aligned_cols=60 Identities=5% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEeCCCc-cHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEeCCCCCCCCChHHHHHHHHHHH
Q 024465 76 VQLSFGDRL-GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 142 (267)
Q Consensus 76 V~V~~~DRp-GLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~~~~g~~l~~~~~~erl~~~L~ 142 (267)
|...+.... .+++.++..+ ....||.+|.|....+...-.|++.-. |. +++.++..+.|.
T Consensus 7 l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~--g~----~~~~~~a~~~L~ 67 (76)
T PF09383_consen 7 LTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELP--GD----DEEIEKAIAYLR 67 (76)
T ss_dssp EEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEE--S-----HHHHHHHHHHHH
T ss_pred EEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEE--CC----HHHHHHHHHHHH
Confidence 333443333 3778877776 788999999999999999888888763 43 345555555543
No 330
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=31.15 E-value=2e+02 Score=21.10 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=35.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCC
Q 024465 187 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAAL 241 (267)
Q Consensus 187 ~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l 241 (267)
....+.+...| +..+.+.|.+.|+++...-... ++.. ..|++.| +|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~-~~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDI-PGVG-RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCccc-CCcE-EEEEEECCCCCEE
Confidence 45667777777 6778888999999988654332 2222 4799999 99875
No 331
>PRK14643 hypothetical protein; Provisional
Probab=30.22 E-value=3.4e+02 Score=22.91 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe---CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY---GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d---~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+..++.+.|+.+...+..+.|....-..||.+ .+..++-..|+.+.+.|-..|+....-.++|
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y 80 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKY 80 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCe
Confidence 445566778899999999999998887666777753 2335777789999999999998555444444
No 332
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=29.40 E-value=1e+02 Score=21.53 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=30.2
Q ss_pred EEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 75 IVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 75 ~V~V~~-~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
.|+|.+ .+.||.++++...|.+.|+||---..+ .. --.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEch
Confidence 455553 466999999999999999999877333 22 23466643
No 333
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.34 E-value=58 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=28.6
Q ss_pred eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 80 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 80 ~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
.++.||.++++..+|.+.|+||..-. + +. .--.|.|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 36889999999999999999998764 2 22 224466654
No 334
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=29.13 E-value=67 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=29.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024465 74 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT 108 (267)
Q Consensus 74 t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T 108 (267)
..+.|.-+|+||-|..+-.=|+.+|.||..--=..
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r 40 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSR 40 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeec
Confidence 46788899999999999999999999998643333
No 335
>PRK09034 aspartate kinase; Reviewed
Probab=29.07 E-value=3.2e+02 Score=26.69 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024465 71 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNT 108 (267)
Q Consensus 71 ~~~t~V~V~~---~DRpGLL~di~~~L~~~~lnI~~A~I~T 108 (267)
++...|+|.+ ++.||++.++..+|.+.|+||.--...+
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5778899965 4899999999999999999998665433
No 336
>PRK06291 aspartate kinase; Provisional
Probab=28.82 E-value=3.7e+02 Score=26.29 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 71 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 71 ~~~t~V~V~~~---DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
.+...|.|.+. +++|++.++..+|.+.|++|.--...+.+... .|.|..
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~I--s~vV~~ 447 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNI--SFVVDE 447 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeE--EEEEeH
Confidence 46778888885 79999999999999999999854443332222 356643
No 337
>PLN02551 aspartokinase
Probab=26.47 E-value=4.1e+02 Score=26.68 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=35.5
Q ss_pred CCeEEEEEEeC--CCccHHHHHHHHHHHCCceEEEEEEEEcCCeeEEEEEEEe
Q 024465 71 SDATIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 121 (267)
Q Consensus 71 ~~~t~V~V~~~--DRpGLL~di~~~L~~~~lnI~~A~I~T~~~~~~d~F~I~~ 121 (267)
++...|+|.+. ..||++.++..+|.+.|+||.--...+. ..--.|.|..
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~ 493 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND 493 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH
Confidence 57788888865 6899999999999999999986544332 2222356643
No 338
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=26.24 E-value=95 Score=34.92 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCCCCEEEEeecCCCCe--EEEEEEeCCCccHHHHHHHHHHHCCceEEEE
Q 024465 57 YIPMPHVLIDQDSNSDA--TIVQLSFGDRLGALIDTMNALKDLGLDVAKG 104 (267)
Q Consensus 57 ~~~~p~V~i~~~~~~~~--t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A 104 (267)
....|.|.|.....+.. +.|+|..+|.|-|+--|.+.|+.+|+.++-.
T Consensus 70 ~~~~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 70 RAGAPCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred cCCCceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 45678898885444444 8999999999999999999999999988743
No 339
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.92 E-value=2.3e+02 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=25.3
Q ss_pred EEEEEEeC--CCccHHHHHHHHHHHCCceEEEEEE
Q 024465 74 TIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 74 t~V~V~~~--DRpGLL~di~~~L~~~~lnI~~A~I 106 (267)
..|.+.+. .+||++.++..+|.+.|++|..-..
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 45566653 2689999999999999999975433
No 340
>PRK14632 hypothetical protein; Provisional
Probab=25.84 E-value=4.1e+02 Score=22.51 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+.-++.+.|+.+...++.. +..-.-..||.. .| ++-..|+.+-++|-.+|+..+.-.+.|
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~G--V~ldDC~~vSr~is~~LD~~d~i~~~Y 74 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEG--VTIDQCAEVSRHVGLALEVEDVISSAY 74 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhcccccCCCCe
Confidence 33456677889999999999875 444333455533 44 666689999999999998554434444
No 341
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=25.79 E-value=17 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=36.0
Q ss_pred eCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCc
Q 024465 195 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD 263 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~G~~l~~~~~~~L~~~L~~~l~~~~~~ 263 (267)
..+|..++..|.+++.+.|. |||.++| |+.+.++.+.+........|..+
T Consensus 10 ~~~~~~~~~~l~~A~~~~GF-----------------f~l~nhG--i~~~l~~~~~~~~~~fF~lp~e~ 59 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGF-----------------FYLVNHG--IPQELIDRVFAAAREFFALPLEE 59 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSE-----------------EEEESSS--SSHHHHHHHHHHHHHHHCSHHHH
T ss_pred CccHHHHHHHHHHHHHhCCE-----------------EEEeccc--ccchhhHHHHHHHHHHHHhhHHH
Confidence 35577888999999999885 7886666 55666677777777666665443
No 342
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=25.49 E-value=7.6e+02 Score=27.08 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=39.0
Q ss_pred EeCCcccHHHHHHHHHHhCCccEEEEEEEecC-CeeeeEEEEEe-CCC
Q 024465 194 ETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY-GGA 239 (267)
Q Consensus 194 ~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g-~~a~d~F~v~d-~G~ 239 (267)
......|+++.|+.++.-+|+.+.++-+.+.. +-..=.|||+. .+.
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 56677899999999999999999999999984 44677999987 443
No 343
>PRK14633 hypothetical protein; Provisional
Probab=24.59 E-value=4e+02 Score=21.97 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 261 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~~ 261 (267)
+-..+..++.+.|+.+...++...+.. .-..||.. .| ++-..|+.+-++|-.+|+..+
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~-~lrV~ID~~~G--v~lddC~~vSr~i~~~LD~~d 64 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKL-TIRIFIDHENG--VSVDDCQIVSKEISAVFDVED 64 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCc-EEEEEEeCCCC--CCHHHHHHHHHHHHHHhccCc
Confidence 345677889999999999999877664 33445533 44 666789999999999998543
No 344
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.50 E-value=52 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.5
Q ss_pred eCCcccHHHHHHHHHHhCCccEE
Q 024465 195 TADRPGLLVEIMKIIADVNVDVE 217 (267)
Q Consensus 195 ~~DRpGLL~~Itr~l~~~gl~I~ 217 (267)
.-|-+|+|+.|.+.|+++|+-|-
T Consensus 73 ~FgltGilasV~~pLsd~gigIF 95 (128)
T COG3603 73 DFGLTGILASVSQPLSDNGIGIF 95 (128)
T ss_pred cCCcchhhhhhhhhHhhCCccEE
Confidence 34889999999999999999874
No 345
>PRK14630 hypothetical protein; Provisional
Probab=23.93 E-value=4.1e+02 Score=21.80 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 024465 197 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 260 (267)
Q Consensus 197 DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l~~~~~~~L~~~L~~~l~~~ 260 (267)
|..-+-.-+..++.+.|+.+...+....|....-..|+.. .| ++-..|+.+-+++...|+.|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGVDTLCDLHKMILLILEAV 68 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhccc
Confidence 4445566788889999999999998887766555666654 44 77678899999988888754
No 346
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.89 E-value=2.1e+02 Score=20.95 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=36.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eeEEEEEEEeCCCCCCC
Q 024465 72 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKV 128 (267)
Q Consensus 72 ~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~A~I~T~~~-~~~d~F~I~~~~~g~~l 128 (267)
+..-+.+.+.+. +..+...|.+.|+.+..+-....+. +....|+++++ +|..+
T Consensus 67 ~~~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DP-dG~~v 120 (125)
T cd07253 67 GSDDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDP-DGNLI 120 (125)
T ss_pred CCceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECC-CCCEE
Confidence 444555666654 8889999999999988665543332 22355889997 88764
No 347
>PRK08841 aspartate kinase; Validated
Probab=23.61 E-value=4.5e+02 Score=25.21 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEE
Q 024465 71 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAK 103 (267)
Q Consensus 71 ~~~t~V~V~~~DRpGLL~di~~~L~~~~lnI~~ 103 (267)
.+...|.+.+...||+..++..+|.+.|+||..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 577899999999999999999999999999954
No 348
>PRK14631 hypothetical protein; Provisional
Probab=23.49 E-value=4.6e+02 Score=22.29 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEeC-----------------CCCCChHHHHHHHHHHHHHcCCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYG-----------------GAALNSSLSQVLVNCLRYYLRRPE 261 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d~-----------------G~~l~~~~~~~L~~~L~~~l~~~~ 261 (267)
+-.-+.-++.+.|+.+...++...|....-..||... +..++-..|+.+-++|-.+|+..+
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcccc
Confidence 4456777889999999999999887665555666421 345777789999999999998544
No 349
>PRK14635 hypothetical protein; Provisional
Probab=23.21 E-value=4.5e+02 Score=21.99 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CC--CCCChHHHHHHHHHHHHHcCCCCCccCCC
Q 024465 201 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GG--AALNSSLSQVLVNCLRYYLRRPETDIDSY 267 (267)
Q Consensus 201 LL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G--~~l~~~~~~~L~~~L~~~l~~~~~~~~~~ 267 (267)
+-.-+..++ +.|+.+...++...|.+..-..+|.. ++ ..++-..|+.+-+++-.+|+..+-. .+|
T Consensus 8 i~~l~~~~~-~~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~-~~Y 75 (162)
T PRK14635 8 ISEILDRVL-ALPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPD-LDF 75 (162)
T ss_pred HHHHHHHHH-CCCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCC-CCe
Confidence 334445556 46999999999888877665666642 22 3477778999999999999864332 344
No 350
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=22.57 E-value=1.2e+03 Score=26.87 Aligned_cols=205 Identities=16% Similarity=0.174 Sum_probs=109.1
Q ss_pred CCCCCEEEEeecCCCCeEEEEE-EeCCCc--cHHHHHHHHHHHC-CceEEEEE-EEEcCCeeEEEEEEEeCCCCCCC-CC
Q 024465 57 YIPMPHVLIDQDSNSDATIVQL-SFGDRL--GALIDTMNALKDL-GLDVAKGT-VNTEGSVKQTKFFITRLDTGRKV-ED 130 (267)
Q Consensus 57 ~~~~p~V~i~~~~~~~~t~V~V-~~~DRp--GLL~di~~~L~~~-~lnI~~A~-I~T~~~~~~d~F~I~~~~~g~~l-~~ 130 (267)
..++..+-+..+....+.-+.| .-+||- .+-.+|-..|.+. +....+-+ .++.+.-+.--|+|+.. .+... .+
T Consensus 325 er~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~-~~~~~~~d 403 (1528)
T PF05088_consen 325 ERRRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVD-PGHEPDID 403 (1528)
T ss_pred cCCceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeC-CCCCCCCC
Confidence 3456677777766666554444 456664 3677788877764 33343333 34444444445777664 44432 22
Q ss_pred hHHHHHHHHHHHHHhhccCCCch------------hHhhhc--cccC-----ccCCCcc-cc--------cccceeEEec
Q 024465 131 PDLLERIRLTIINNLLKYHPESS------------EQLAMG--EAFG-----IKAPEKK-LD--------VDIATHIHVK 182 (267)
Q Consensus 131 ~~~~erl~~~L~~~L~~~~~~~~------------~~la~~--~~~~-----~~~~~r~-~~--------~~~~~~V~i~ 182 (267)
. ++|++.|.++...+.-.+. ..+... .++. ...+.+. .+ -..+..+.+.
T Consensus 404 ~---~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~ 480 (1528)
T PF05088_consen 404 V---EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLY 480 (1528)
T ss_pred H---HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEe
Confidence 2 3344443332222110000 000000 0000 0011110 00 0123344443
Q ss_pred cCC---CCeEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEE---Eec-C-CeeeeEEEEEe-CCCCCChH-HHHHHHHH
Q 024465 183 EDG---PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEI---DTE-G-LVAKDKFHVSY-GGAALNSS-LSQVLVNC 252 (267)
Q Consensus 183 ~~~---s~~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i---~T~-g-~~a~d~F~v~d-~G~~l~~~-~~~~L~~~ 252 (267)
... ...+.+.|....++..|++|.-+|...|+.|....- ... | ..-...|++.. .+..++.. ..+.+.++
T Consensus 481 ~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a 560 (1528)
T PF05088_consen 481 RPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEA 560 (1528)
T ss_pred ccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHH
Confidence 322 236899999999999999999999999999987764 432 2 22666788887 66666555 66788888
Q ss_pred HHHHcCCCCCccCC
Q 024465 253 LRYYLRRPETDIDS 266 (267)
Q Consensus 253 L~~~l~~~~~~~~~ 266 (267)
+.++... .+|-|+
T Consensus 561 ~~~v~~g-~~e~D~ 573 (1528)
T PF05088_consen 561 FEAVWNG-RAENDG 573 (1528)
T ss_pred HHHHhcC-CCCCCh
Confidence 7766532 344443
No 351
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.36 E-value=2.1e+02 Score=20.25 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=33.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEEecCCeeeeEEEEEe-CCCCC
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAAL 241 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~T~g~~a~d~F~v~d-~G~~l 241 (267)
...+.+...| +....+.+.+.|+.+....-. ......||+.| +|..+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 3456666777 678889999999998765422 22334688898 99865
No 352
>PRK00907 hypothetical protein; Provisional
Probab=22.27 E-value=3.2e+02 Score=20.83 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCccEEEEEEE
Q 024465 188 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 222 (267)
Q Consensus 188 ~t~l~i~~~DRpGLL~~Itr~l~~~gl~I~~a~i~ 222 (267)
.+.+.|.+.++++|...|..++..+.-......+.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~ 51 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERIS 51 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEE
Confidence 47888999999999999999999988766555553
No 353
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=22.13 E-value=5.7e+02 Score=22.82 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=32.1
Q ss_pred eEEEEEEeCCccc--HHHHHHHHHHhCCccEEEEEEEecC
Q 024465 188 RSLLYIETADRPG--LLVEIMKIIADVNVDVESAEIDTEG 225 (267)
Q Consensus 188 ~t~l~i~~~DRpG--LL~~Itr~l~~~gl~I~~a~i~T~g 225 (267)
.+.+++.|.+.++ +...+-+.|.+.++.+.+.++...+
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 6788888888665 5899999999999999999996653
No 354
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.57 E-value=2.6e+02 Score=18.75 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEEeC---CCccHHHHHHHHHHHC
Q 024465 74 TIVQLSFG---DRLGALIDTMNALKDL 97 (267)
Q Consensus 74 t~V~V~~~---DRpGLL~di~~~L~~~ 97 (267)
..|.|.+. ++||++.++..+|.+.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i 28 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDI 28 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhC
Confidence 45667765 7899999999999763
No 355
>PRK09181 aspartate kinase; Validated
Probab=20.33 E-value=6e+02 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCeEEEEEEeCC--CccHHHHHHHHHHHCCceEEEEEE
Q 024465 71 SDATIVQLSFGD--RLGALIDTMNALKDLGLDVAKGTV 106 (267)
Q Consensus 71 ~~~t~V~V~~~D--RpGLL~di~~~L~~~~lnI~~A~I 106 (267)
.+...|.|.+.. +||+.+++..+|.+.|+||..-..
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 577889998765 899999999999999999975443
Done!