Query 024466
Match_columns 267
No_of_seqs 258 out of 1390
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00601 rad23 UV excision re 100.0 6.4E-45 1.4E-49 346.6 22.8 191 1-197 1-196 (378)
2 KOG0011 Nucleotide excision re 100.0 1.8E-40 3.9E-45 306.0 16.8 174 1-195 1-174 (340)
3 cd01807 GDX_N ubiquitin-like d 99.8 6.2E-19 1.3E-23 131.4 9.4 73 1-76 1-73 (74)
4 cd01805 RAD23_N Ubiquitin-like 99.8 3.3E-18 7.1E-23 127.7 10.1 75 1-78 1-77 (77)
5 cd01797 NIRF_N amino-terminal 99.8 4.7E-18 1E-22 128.8 9.3 74 1-77 1-76 (78)
6 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 6.8E-18 1.5E-22 126.6 8.8 71 1-74 2-72 (73)
7 cd01793 Fubi Fubi ubiquitin-li 99.7 8.9E-18 1.9E-22 125.3 9.3 73 1-78 1-73 (74)
8 PTZ00044 ubiquitin; Provisiona 99.7 1.9E-17 4.1E-22 123.4 9.6 74 1-77 1-74 (76)
9 cd01804 midnolin_N Ubiquitin-l 99.7 2.1E-17 4.7E-22 124.9 9.1 72 1-76 2-73 (78)
10 cd01802 AN1_N ubiquitin-like d 99.7 3.2E-17 7E-22 130.6 9.5 75 1-78 28-102 (103)
11 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.8E-17 1.7E-21 119.3 10.1 74 1-77 1-74 (76)
12 cd01792 ISG15_repeat1 ISG15 ub 99.7 3.6E-17 7.8E-22 124.0 8.4 73 1-76 3-77 (80)
13 cd01810 ISG15_repeat2 ISG15 ub 99.7 4.9E-17 1.1E-21 121.3 8.8 72 3-77 1-72 (74)
14 cd01794 DC_UbP_C dendritic cel 99.7 5.2E-17 1.1E-21 120.7 8.1 69 3-74 1-69 (70)
15 cd01803 Ubiquitin Ubiquitin. U 99.7 9.9E-17 2.1E-21 118.7 9.5 74 1-77 1-74 (76)
16 cd01798 parkin_N amino-termina 99.7 7E-17 1.5E-21 119.0 8.2 70 3-75 1-70 (70)
17 cd01809 Scythe_N Ubiquitin-lik 99.7 1.4E-16 3E-21 116.8 9.5 72 1-75 1-72 (72)
18 cd01808 hPLIC_N Ubiquitin-like 99.7 1.4E-16 3.1E-21 117.7 8.9 71 1-75 1-71 (71)
19 cd01790 Herp_N Homocysteine-re 99.7 1.2E-16 2.5E-21 121.7 8.2 73 1-74 2-78 (79)
20 PF00240 ubiquitin: Ubiquitin 99.7 3.1E-16 6.7E-21 114.5 8.1 68 6-76 1-68 (69)
21 cd01813 UBP_N UBP ubiquitin pr 99.6 8.3E-16 1.8E-20 115.4 8.4 70 1-74 1-73 (74)
22 cd01796 DDI1_N DNA damage indu 99.6 1E-15 2.2E-20 113.6 7.8 68 3-73 1-70 (71)
23 cd01812 BAG1_N Ubiquitin-like 99.6 3.5E-15 7.6E-20 109.3 8.5 70 1-74 1-70 (71)
24 cd01800 SF3a120_C Ubiquitin-li 99.6 8.1E-15 1.7E-19 110.0 8.4 68 8-78 5-72 (76)
25 KOG0005 Ubiquitin-like protein 99.6 2.9E-15 6.3E-20 107.6 4.9 70 1-73 1-70 (70)
26 KOG0010 Ubiquitin-like protein 99.5 9.6E-14 2.1E-18 134.8 10.3 77 1-81 16-92 (493)
27 smart00213 UBQ Ubiquitin homol 99.5 1.1E-13 2.4E-18 98.3 7.9 64 1-68 1-64 (64)
28 KOG0003 Ubiquitin/60s ribosoma 99.5 6.8E-15 1.5E-19 117.1 0.2 76 1-79 1-76 (128)
29 cd01763 Sumo Small ubiquitin-r 99.5 5.7E-13 1.2E-17 102.7 9.9 75 1-78 12-86 (87)
30 KOG0004 Ubiquitin/40S ribosoma 99.4 8.3E-14 1.8E-18 117.4 5.1 79 1-82 1-79 (156)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 2.8E-13 6.1E-18 102.2 5.6 55 19-74 19-74 (75)
32 cd01814 NTGP5 Ubiquitin-like N 99.3 2.7E-12 5.8E-17 103.4 7.1 77 2-78 6-93 (113)
33 cd01769 UBL Ubiquitin-like dom 99.3 5.7E-12 1.2E-16 90.6 8.2 68 4-74 1-68 (69)
34 cd01799 Hoil1_N Ubiquitin-like 99.3 6.2E-12 1.4E-16 94.7 7.7 65 6-74 8-74 (75)
35 PF11976 Rad60-SLD: Ubiquitin- 99.2 6E-11 1.3E-15 87.3 7.8 71 1-74 1-72 (72)
36 PF00627 UBA: UBA/TS-N domain; 99.1 8.1E-11 1.8E-15 76.9 5.2 36 153-191 2-37 (37)
37 cd01795 USP48_C USP ubiquitin- 99.0 8.8E-10 1.9E-14 87.1 7.1 62 12-76 16-78 (107)
38 cd00194 UBA Ubiquitin Associat 98.9 1.4E-09 3E-14 71.0 5.0 37 154-193 2-38 (38)
39 PF13881 Rad60-SLD_2: Ubiquiti 98.9 1.2E-08 2.7E-13 82.4 10.6 68 2-69 4-76 (111)
40 KOG0001 Ubiquitin and ubiquiti 98.9 1.2E-08 2.7E-13 72.4 9.5 72 3-77 2-73 (75)
41 smart00165 UBA Ubiquitin assoc 98.9 2E-09 4.4E-14 69.9 4.8 36 154-192 2-37 (37)
42 PLN02560 enoyl-CoA reductase 98.9 5.4E-09 1.2E-13 98.1 8.7 70 1-72 1-80 (308)
43 cd01789 Alp11_N Ubiquitin-like 98.9 1.2E-08 2.6E-13 78.3 9.0 71 2-75 3-81 (84)
44 KOG4248 Ubiquitin-like protein 98.8 9.7E-09 2.1E-13 107.1 9.2 71 2-76 4-74 (1143)
45 cd01801 Tsc13_N Ubiquitin-like 98.7 4.1E-08 9E-13 73.8 7.1 69 2-72 2-74 (77)
46 PF14560 Ubiquitin_2: Ubiquiti 98.7 9.8E-08 2.1E-12 73.2 7.5 72 2-76 3-84 (87)
47 cd01788 ElonginB Ubiquitin-lik 98.6 2.3E-07 5E-12 75.0 7.7 73 1-76 1-81 (119)
48 PF11543 UN_NPL4: Nuclear pore 98.5 2.2E-07 4.8E-12 70.9 5.4 68 1-72 5-77 (80)
49 cd00196 UBQ Ubiquitin-like pro 98.5 1.4E-06 3.1E-11 58.2 8.3 67 5-74 2-68 (69)
50 KOG1872 Ubiquitin-specific pro 98.2 5.6E-06 1.2E-10 80.8 7.7 72 2-77 5-77 (473)
51 KOG0006 E3 ubiquitin-protein l 98.1 4.6E-06 9.9E-11 78.2 5.9 74 1-77 1-77 (446)
52 cd01811 OASL_repeat1 2'-5' oli 97.9 8.5E-05 1.8E-09 56.0 8.2 71 1-75 1-76 (80)
53 KOG3493 Ubiquitin-like protein 97.8 1.2E-05 2.5E-10 59.1 1.5 69 2-73 3-71 (73)
54 PF10302 DUF2407: DUF2407 ubiq 97.6 0.00019 4E-09 56.8 6.2 60 3-63 3-65 (97)
55 KOG0944 Ubiquitin-specific pro 97.5 4.4E-05 9.6E-10 77.4 2.8 40 151-193 633-672 (763)
56 PF02845 CUE: CUE domain; Int 97.5 0.00017 3.7E-09 48.1 3.9 40 154-194 2-41 (42)
57 KOG4495 RNA polymerase II tran 97.5 0.00021 4.5E-09 56.4 4.8 60 3-66 5-66 (110)
58 KOG1769 Ubiquitin-like protein 97.4 0.0014 3.1E-08 51.9 8.5 72 2-76 22-93 (99)
59 PF08817 YukD: WXG100 protein 97.3 0.00055 1.2E-08 51.6 5.3 71 2-72 4-78 (79)
60 KOG4583 Membrane-associated ER 97.2 4.6E-05 1E-09 71.9 -1.8 75 2-77 11-89 (391)
61 PF00789 UBX: UBX domain; Int 97.1 0.0034 7.3E-08 47.1 8.2 68 2-72 8-80 (82)
62 smart00166 UBX Domain present 97.1 0.0047 1E-07 46.4 8.6 68 2-72 6-78 (80)
63 cd01767 UBX UBX (ubiquitin reg 97.0 0.0082 1.8E-07 44.8 8.9 67 2-73 4-75 (77)
64 TIGR00601 rad23 UV excision re 96.9 0.0012 2.7E-08 63.8 4.8 41 151-194 335-375 (378)
65 cd01772 SAKS1_UBX SAKS1-like U 96.8 0.011 2.3E-07 44.7 8.6 67 2-72 6-77 (79)
66 smart00546 CUE Domain that may 96.8 0.0041 8.9E-08 41.5 5.4 40 153-195 2-43 (43)
67 cd01770 p47_UBX p47-like ubiqu 96.8 0.012 2.7E-07 44.6 8.5 67 2-71 6-75 (79)
68 KOG0418 Ubiquitin-protein liga 96.6 0.0028 6.2E-08 55.5 4.8 45 147-194 156-200 (200)
69 KOG1639 Steroid reductase requ 96.5 0.006 1.3E-07 55.9 6.4 70 1-72 1-76 (297)
70 PF11470 TUG-UBL1: GLUT4 regul 96.5 0.013 2.7E-07 43.2 7.0 63 7-72 3-65 (65)
71 COG5417 Uncharacterized small 96.5 0.011 2.5E-07 44.6 6.7 71 2-72 6-80 (81)
72 KOG0013 Uncharacterized conser 96.2 0.0085 1.8E-07 53.6 5.5 64 9-75 155-220 (231)
73 cd01773 Faf1_like1_UBX Faf1 ik 96.2 0.054 1.2E-06 41.7 8.9 68 2-73 7-79 (82)
74 KOG0011 Nucleotide excision re 96.0 0.0083 1.8E-07 56.8 4.5 42 151-195 296-337 (340)
75 cd01774 Faf1_like2_UBX Faf1 ik 96.0 0.065 1.4E-06 41.2 8.6 67 2-72 6-82 (85)
76 cd01771 Faf1_UBX Faf1 UBX doma 95.5 0.13 2.9E-06 39.0 8.7 67 2-72 6-77 (80)
77 PF13019 Telomere_Sde2: Telome 95.5 0.12 2.5E-06 44.7 9.1 75 1-78 1-87 (162)
78 COG5227 SMT3 Ubiquitin-like pr 95.0 0.1 2.2E-06 41.0 6.6 69 3-74 27-95 (103)
79 PF09288 UBA_3: Fungal ubiquit 94.5 0.043 9.3E-07 39.2 3.2 24 154-180 10-33 (55)
80 KOG0010 Ubiquitin-like protein 94.3 0.064 1.4E-06 53.3 5.0 41 150-193 451-492 (493)
81 PF06972 DUF1296: Protein of u 93.9 0.18 4E-06 36.5 5.3 41 152-193 4-44 (60)
82 KOG2561 Adaptor protein NUB1, 93.8 0.061 1.3E-06 53.1 3.7 58 15-75 54-111 (568)
83 KOG3206 Alpha-tubulin folding 93.8 0.18 3.8E-06 45.3 6.2 59 13-74 15-80 (234)
84 COG5207 UBP14 Isopeptidase T [ 93.5 0.036 7.9E-07 55.5 1.7 45 151-198 619-666 (749)
85 PF15044 CLU_N: Mitochondrial 93.4 0.15 3.3E-06 38.4 4.6 56 17-74 1-57 (76)
86 PF11626 Rap1_C: TRF2-interact 93.3 0.13 2.7E-06 39.6 4.0 35 157-194 1-35 (87)
87 PF14555 UBA_4: UBA-like domai 93.1 0.29 6.3E-06 32.6 5.1 37 154-193 1-38 (43)
88 PF07499 RuvA_C: RuvA, C-termi 93.0 0.11 2.4E-06 35.5 3.0 37 153-192 3-39 (47)
89 COG5207 UBP14 Isopeptidase T [ 92.3 0.18 3.9E-06 50.7 4.6 37 154-193 559-596 (749)
90 PLN02799 Molybdopterin synthas 91.9 0.72 1.6E-05 34.5 6.6 66 1-73 2-76 (82)
91 KOG2561 Adaptor protein NUB1, 91.9 0.18 3.8E-06 50.0 3.9 37 154-193 430-466 (568)
92 KOG0012 DNA damage inducible p 91.4 0.31 6.7E-06 46.9 4.9 69 1-72 1-73 (380)
93 PRK06437 hypothetical protein; 90.4 2.1 4.6E-05 31.2 7.6 54 9-74 9-62 (67)
94 PF14453 ThiS-like: ThiS-like 89.8 2.1 4.6E-05 30.8 6.9 55 1-74 1-55 (57)
95 PF09379 FERM_N: FERM N-termin 89.7 2.1 4.6E-05 31.3 7.3 59 5-65 1-65 (80)
96 KOG0944 Ubiquitin-specific pro 89.3 0.52 1.1E-05 48.7 4.8 38 153-193 571-609 (763)
97 cd00754 MoaD Ubiquitin domain 89.3 2 4.4E-05 31.3 6.9 58 12-74 17-75 (80)
98 PRK08364 sulfur carrier protei 89.2 3.1 6.8E-05 30.4 7.8 51 12-74 15-65 (70)
99 cd06409 PB1_MUG70 The MUG70 pr 88.0 1.9 4.2E-05 33.4 6.1 48 2-49 2-49 (86)
100 cd06406 PB1_P67 A PB1 domain i 87.8 2.3 5.1E-05 32.6 6.4 37 12-51 12-48 (80)
101 PF08938 HBS1_N: HBS1 N-termin 87.2 0.31 6.8E-06 36.8 1.3 33 166-198 41-74 (79)
102 PRK06488 sulfur carrier protei 86.5 3.5 7.7E-05 29.5 6.5 60 1-74 1-60 (65)
103 PRK12332 tsf elongation factor 84.9 1.6 3.5E-05 38.8 4.8 36 155-193 6-42 (198)
104 PF07462 MSP1_C: Merozoite sur 84.9 2.3 4.9E-05 43.1 6.3 10 215-224 407-416 (574)
105 TIGR01682 moaD molybdopterin c 84.9 6.2 0.00013 29.2 7.4 59 9-73 13-74 (80)
106 TIGR00116 tsf translation elon 84.0 1.7 3.7E-05 40.8 4.8 36 155-193 6-42 (290)
107 cd01760 RBD Ubiquitin-like dom 83.0 4.5 9.9E-05 30.2 5.8 64 3-72 2-69 (72)
108 PF12754 Blt1: Cell-cycle cont 82.8 0.38 8.3E-06 45.4 0.0 60 2-64 80-159 (309)
109 PF14836 Ubiquitin_3: Ubiquiti 82.7 7.2 0.00016 30.4 7.0 61 12-76 15-81 (88)
110 smart00295 B41 Band 4.1 homolo 82.6 14 0.00031 31.2 9.7 61 2-65 5-72 (207)
111 PF02597 ThiS: ThiS family; I 82.3 3.3 7.1E-05 29.9 4.8 60 12-74 13-72 (77)
112 KOG0559 Dihydrolipoamide succi 81.6 11 0.00024 36.8 9.2 52 19-72 82-139 (457)
113 TIGR01687 moaD_arch MoaD famil 81.3 8.4 0.00018 28.9 7.0 59 12-74 17-83 (88)
114 CHL00098 tsf elongation factor 80.8 2.9 6.2E-05 37.3 4.8 36 155-193 3-39 (200)
115 PRK09377 tsf elongation factor 80.4 2.8 6.1E-05 39.4 4.8 36 155-193 7-43 (290)
116 COG5100 NPL4 Nuclear pore prot 80.2 6.7 0.00015 38.7 7.4 73 1-75 1-79 (571)
117 cd06407 PB1_NLP A PB1 domain i 80.2 12 0.00027 28.5 7.5 70 1-74 1-80 (82)
118 PF10790 DUF2604: Protein of U 80.0 9 0.0002 28.5 6.3 67 9-75 4-71 (76)
119 smart00666 PB1 PB1 domain. Pho 79.7 9.7 0.00021 27.9 6.7 46 2-51 3-48 (81)
120 PF07223 DUF1421: Protein of u 79.7 4.1 8.9E-05 39.4 5.8 29 146-177 314-342 (358)
121 PF07462 MSP1_C: Merozoite sur 78.8 5.7 0.00012 40.4 6.6 14 188-201 362-375 (574)
122 PF11069 DUF2870: Protein of u 78.7 4.2 9.1E-05 32.4 4.6 30 45-75 3-32 (98)
123 PRK05659 sulfur carrier protei 78.6 11 0.00024 26.7 6.5 61 1-74 1-61 (66)
124 KOG2086 Protein tyrosine phosp 78.2 5.9 0.00013 38.6 6.3 64 2-67 307-373 (380)
125 PRK05863 sulfur carrier protei 77.4 13 0.00028 26.7 6.6 60 1-74 1-60 (65)
126 smart00455 RBD Raf-like Ras-bi 77.2 8.5 0.00018 28.4 5.6 48 4-54 3-52 (70)
127 PF11620 GABP-alpha: GA-bindin 76.4 7.2 0.00016 30.4 5.2 61 13-76 5-65 (88)
128 cd00565 ThiS ThiaminS ubiquiti 76.2 12 0.00026 26.6 6.1 57 8-74 4-60 (65)
129 PRK06369 nac nascent polypepti 76.1 6.6 0.00014 32.1 5.2 37 154-193 77-114 (115)
130 KOG2689 Predicted ubiquitin re 75.0 3.7 8E-05 38.4 3.8 33 158-193 5-39 (290)
131 PRK08053 sulfur carrier protei 74.0 21 0.00047 25.5 7.0 61 1-74 1-61 (66)
132 PRK06944 sulfur carrier protei 73.6 24 0.00053 24.8 7.1 60 1-74 1-60 (65)
133 PRK08769 DNA polymerase III su 73.1 14 0.00031 35.0 7.4 49 152-203 173-221 (319)
134 PRK13901 ruvA Holliday junctio 72.0 5.4 0.00012 35.5 4.0 30 152-184 143-172 (196)
135 PF10209 DUF2340: Uncharacteri 71.9 11 0.00024 31.2 5.5 60 16-75 21-108 (122)
136 PF14732 UAE_UbL: Ubiquitin/SU 71.7 9.2 0.0002 29.4 4.8 52 19-73 7-67 (87)
137 cd01787 GRB7_RA RA (RAS-associ 71.5 31 0.00066 26.8 7.6 67 3-71 5-81 (85)
138 COG2104 ThiS Sulfur transfer p 71.0 31 0.00067 25.5 7.3 63 1-74 1-63 (68)
139 PF08337 Plexin_cytopl: Plexin 70.5 11 0.00024 38.5 6.3 65 11-76 202-290 (539)
140 TIGR00264 alpha-NAC-related pr 70.4 9.9 0.00022 31.2 4.9 36 154-192 79-115 (116)
141 TIGR02958 sec_mycoba_snm4 secr 69.7 32 0.0007 34.2 9.3 72 2-74 4-79 (452)
142 cd06408 PB1_NoxR The PB1 domai 69.5 21 0.00046 27.7 6.4 46 2-51 2-48 (86)
143 PF15652 Tox-SHH: HNH/Endo VII 68.8 6.5 0.00014 31.4 3.4 31 149-182 67-97 (100)
144 PRK07696 sulfur carrier protei 67.8 31 0.00067 25.0 6.7 61 1-74 1-62 (67)
145 TIGR01683 thiS thiamine biosyn 67.2 24 0.00053 25.0 6.0 57 8-74 3-59 (64)
146 PF08587 UBA_2: Ubiquitin asso 66.9 1.6 3.5E-05 30.1 -0.3 24 156-182 5-29 (46)
147 PRK07440 hypothetical protein; 66.2 34 0.00074 25.0 6.7 57 8-74 9-65 (70)
148 PF02954 HTH_8: Bacterial regu 66.1 5.4 0.00012 26.2 2.2 26 168-193 5-30 (42)
149 cd05992 PB1 The PB1 domain is 65.8 25 0.00055 25.5 6.0 45 2-50 2-47 (81)
150 TIGR00084 ruvA Holliday juncti 65.5 6.6 0.00014 34.5 3.2 28 152-182 146-173 (191)
151 PF00564 PB1: PB1 domain; Int 65.4 25 0.00054 25.7 6.0 44 3-50 4-48 (84)
152 PF10152 DUF2360: Predicted co 65.1 56 0.0012 27.5 8.7 32 150-185 113-144 (148)
153 PRK06083 sulfur carrier protei 65.0 38 0.00082 25.9 7.0 57 8-74 23-79 (84)
154 cd03211 GST_C_Metaxin2 GST_C f 65.0 8.4 0.00018 31.1 3.5 58 151-208 36-96 (126)
155 cd01611 GABARAP Ubiquitin doma 64.3 43 0.00093 27.0 7.5 58 16-76 46-107 (112)
156 PF02196 RBD: Raf-like Ras-bin 63.7 42 0.00091 24.7 6.8 57 3-62 3-61 (71)
157 PF12616 DUF3775: Protein of u 63.6 13 0.00029 28.0 4.1 39 155-193 19-58 (75)
158 PRK14602 ruvA Holliday junctio 61.5 9.2 0.0002 34.0 3.4 28 151-181 153-180 (203)
159 COG0264 Tsf Translation elonga 60.7 15 0.00033 34.7 4.8 37 155-193 7-43 (296)
160 PTZ00380 microtubule-associate 60.6 25 0.00055 29.0 5.6 59 15-76 45-106 (121)
161 PF03216 Rhabdo_ncap_2: Rhabdo 60.4 6.9 0.00015 37.0 2.5 72 150-232 75-148 (357)
162 KOG2982 Uncharacterized conser 57.3 12 0.00026 36.1 3.5 54 17-73 354-415 (418)
163 KOG4250 TANK binding protein k 57.3 37 0.0008 35.8 7.3 69 3-76 316-387 (732)
164 PRK14606 ruvA Holliday junctio 57.3 14 0.0003 32.5 3.8 28 152-182 142-169 (188)
165 KOG2507 Ubiquitin regulatory p 57.3 21 0.00046 35.5 5.3 75 2-79 316-395 (506)
166 cd06411 PB1_p51 The PB1 domain 56.8 45 0.00098 25.5 6.0 36 12-50 8-43 (78)
167 PF14451 Ub-Mut7C: Mut7-C ubiq 56.7 49 0.0011 25.2 6.3 53 10-74 22-75 (81)
168 PF02017 CIDE-N: CIDE-N domain 56.6 41 0.00089 25.6 5.7 64 4-76 6-72 (78)
169 PRK14600 ruvA Holliday junctio 55.7 14 0.00031 32.4 3.6 27 152-181 144-170 (186)
170 PF08825 E2_bind: E2 binding d 55.4 10 0.00023 29.1 2.4 55 15-73 1-69 (84)
171 COG0632 RuvA Holliday junction 55.1 12 0.00027 33.3 3.1 29 152-183 155-183 (201)
172 KOG2689 Predicted ubiquitin re 54.2 36 0.00077 32.0 6.0 68 2-72 212-284 (290)
173 PRK07993 DNA polymerase III su 53.6 28 0.00062 33.1 5.5 42 154-198 170-212 (334)
174 PRK14604 ruvA Holliday junctio 53.6 14 0.0003 32.7 3.1 27 153-182 149-175 (195)
175 PRK11840 bifunctional sulfur c 53.2 47 0.001 31.9 6.8 63 1-76 1-63 (326)
176 PRK14601 ruvA Holliday junctio 52.8 17 0.00037 31.9 3.6 26 152-180 141-166 (183)
177 KOG2500 Uncharacterized conser 52.5 74 0.0016 29.2 7.6 15 61-75 149-163 (253)
178 PF14533 USP7_C2: Ubiquitin-sp 50.8 48 0.001 29.4 6.2 48 12-62 35-90 (213)
179 PRK11130 moaD molybdopterin sy 50.7 99 0.0021 22.9 7.1 54 15-73 19-75 (81)
180 KOG0062 ATPase component of AB 50.1 40 0.00087 34.5 6.1 111 149-263 170-318 (582)
181 KOG1364 Predicted ubiquitin re 50.0 19 0.00041 34.8 3.6 66 2-69 279-349 (356)
182 PRK14603 ruvA Holliday junctio 49.4 43 0.00093 29.6 5.6 27 152-181 151-177 (197)
183 PF11547 E3_UbLigase_EDD: E3 u 47.0 62 0.0013 22.7 4.8 37 154-193 10-48 (53)
184 KOG3391 Transcriptional co-rep 46.9 23 0.00051 30.0 3.3 30 51-80 112-141 (151)
185 PLN02983 biotin carboxyl carri 45.6 75 0.0016 29.8 6.7 28 53-81 115-142 (274)
186 PF03474 DMA: DMRTA motif; In 44.7 35 0.00075 22.7 3.2 25 168-192 15-39 (39)
187 smart00266 CAD Domains present 43.3 78 0.0017 23.9 5.4 49 21-75 19-69 (74)
188 PRK06090 DNA polymerase III su 42.9 36 0.00077 32.4 4.3 45 152-201 168-212 (319)
189 cd06396 PB1_NBR1 The PB1 domai 42.7 95 0.0021 23.8 5.9 28 8-35 7-36 (81)
190 PF02991 Atg8: Autophagy prote 42.2 75 0.0016 25.3 5.5 63 9-76 33-99 (104)
191 smart00144 PI3K_rbd PI3-kinase 41.7 1.5E+02 0.0033 23.4 7.2 74 3-76 20-105 (108)
192 cd01612 APG12_C Ubiquitin-like 41.7 1.6E+02 0.0035 22.6 8.3 59 15-76 20-82 (87)
193 PF03918 CcmH: Cytochrome C bi 41.5 22 0.00049 30.1 2.5 63 150-220 59-123 (148)
194 cd01817 RGS12_RBD Ubiquitin do 40.3 1E+02 0.0023 23.2 5.6 46 6-54 5-52 (73)
195 PF06234 TmoB: Toluene-4-monoo 40.0 1.1E+02 0.0023 23.8 5.8 63 13-75 17-84 (85)
196 PF14848 HU-DNA_bdg: DNA-bindi 38.5 67 0.0015 26.0 4.8 42 152-199 30-73 (124)
197 PRK05707 DNA polymerase III su 38.5 82 0.0018 29.9 6.1 47 153-200 167-213 (328)
198 PF11372 DUF3173: Domain of un 38.3 38 0.00081 24.6 2.9 20 158-180 7-26 (59)
199 PF06006 DUF905: Bacterial pro 38.1 22 0.00048 26.6 1.7 18 166-184 6-23 (70)
200 cd06398 PB1_Joka2 The PB1 doma 37.9 1.9E+02 0.0041 22.4 8.3 64 9-75 8-87 (91)
201 PF10407 Cytokin_check_N: Cdc1 37.1 1E+02 0.0022 23.2 5.1 62 11-75 3-70 (73)
202 PF12053 DUF3534: Domain of un 36.2 2E+02 0.0044 24.4 7.4 74 1-76 1-81 (145)
203 cd01615 CIDE_N CIDE_N domain, 36.1 1.1E+02 0.0025 23.3 5.3 49 21-75 21-71 (78)
204 cd01764 Urm1 Urm1-like ubuitin 35.8 69 0.0015 24.8 4.3 55 15-74 23-89 (94)
205 KOG3439 Protein conjugation fa 35.4 2.3E+02 0.005 23.2 7.2 60 13-75 47-110 (116)
206 PF10015 DUF2258: Uncharacteri 35.1 27 0.00058 26.5 1.7 26 222-247 40-65 (75)
207 PRK12270 kgd alpha-ketoglutara 34.7 1.8E+02 0.0039 32.4 8.4 6 177-182 154-159 (1228)
208 cd06410 PB1_UP2 Uncharacterize 33.2 1.7E+02 0.0036 23.0 6.1 40 5-48 17-56 (97)
209 PF00276 Ribosomal_L23: Riboso 33.2 99 0.0021 23.8 4.7 41 11-54 21-62 (91)
210 PF08783 DWNN: DWNN domain; I 32.2 61 0.0013 24.4 3.3 32 4-35 2-35 (74)
211 PF01988 VIT1: VIT family; In 32.0 74 0.0016 28.1 4.4 39 151-193 80-118 (213)
212 COG1308 EGD2 Transcription fac 31.0 1.1E+02 0.0025 25.3 4.9 35 154-191 85-120 (122)
213 PRK14605 ruvA Holliday junctio 30.8 54 0.0012 28.9 3.3 28 152-182 147-174 (194)
214 KOG0559 Dihydrolipoamide succi 30.5 2.4E+02 0.0052 27.9 7.7 17 170-186 246-262 (457)
215 KOG1661 Protein-L-isoaspartate 30.2 54 0.0012 30.0 3.1 29 149-180 6-35 (237)
216 PF09722 DUF2384: Protein of u 29.9 51 0.0011 22.5 2.4 20 175-194 2-21 (54)
217 cd06539 CIDE_N_A CIDE_N domain 29.3 1.6E+02 0.0035 22.5 5.2 49 21-75 21-71 (78)
218 PRK05738 rplW 50S ribosomal pr 29.3 1.4E+02 0.0031 23.1 5.0 40 10-52 20-60 (92)
219 COG3609 Predicted transcriptio 29.2 73 0.0016 24.5 3.4 31 148-180 8-40 (89)
220 PF10440 WIYLD: Ubiquitin-bind 29.2 79 0.0017 23.3 3.3 25 151-178 9-33 (65)
221 PRK10144 formate-dependent nit 29.1 68 0.0015 26.7 3.3 56 149-212 58-115 (126)
222 KOG0532 Leucine-rich repeat (L 28.3 29 0.00063 36.1 1.2 56 187-242 584-659 (722)
223 PF04126 Cyclophil_like: Cyclo 28.1 35 0.00076 27.6 1.5 29 1-30 1-29 (120)
224 KOG1924 RhoA GTPase effector D 28.1 1.7E+02 0.0037 31.7 6.7 29 199-230 691-721 (1102)
225 PRK06871 DNA polymerase III su 27.4 78 0.0017 30.1 3.9 46 153-200 168-213 (325)
226 PF14689 SPOB_a: Sensor_kinase 26.4 75 0.0016 22.6 2.8 14 180-193 35-48 (62)
227 PF04361 DUF494: Protein of un 26.3 79 0.0017 27.0 3.4 26 151-179 21-46 (155)
228 COG4008 Predicted metal-bindin 25.8 1.6E+02 0.0034 24.8 4.9 38 152-193 113-150 (153)
229 PF11288 DUF3089: Protein of u 25.8 39 0.00084 30.3 1.5 32 170-201 66-97 (207)
230 PF09469 Cobl: Cordon-bleu ubi 25.5 59 0.0013 24.9 2.2 42 29-76 2-46 (79)
231 PF03931 Skp1_POZ: Skp1 family 25.5 53 0.0011 23.2 1.9 32 1-32 1-32 (62)
232 PF11816 DUF3337: Domain of un 25.3 1.8E+02 0.004 27.5 6.1 59 19-77 256-329 (331)
233 TIGR03147 cyt_nit_nrfF cytochr 24.9 92 0.002 25.9 3.4 56 149-212 58-115 (126)
234 PF00794 PI3K_rbd: PI3-kinase 24.1 1.5E+02 0.0033 23.0 4.4 74 2-75 18-102 (106)
235 PF12436 USP7_ICP0_bdg: ICP0-b 23.3 95 0.0021 28.2 3.6 58 15-75 89-152 (249)
236 PRK00464 nrdR transcriptional 23.2 2.4E+02 0.0053 24.0 5.8 24 215-238 127-151 (154)
237 COG2080 CoxS Aerobic-type carb 23.2 1.7E+02 0.0037 25.2 4.8 68 1-71 2-73 (156)
238 cd01775 CYR1_RA Ubiquitin doma 22.4 4E+02 0.0087 21.2 6.4 63 8-73 10-85 (97)
239 PF10346 Con-6: Conidiation pr 21.9 62 0.0013 21.2 1.5 17 169-185 2-18 (36)
240 cd01818 TIAM1_RBD Ubiquitin do 21.9 2E+02 0.0042 22.0 4.4 37 5-44 4-40 (77)
241 PRK13042 superantigen-like pro 21.7 3.6E+02 0.0078 25.5 7.0 11 173-183 102-112 (291)
242 PF14533 USP7_C2: Ubiquitin-sp 21.5 82 0.0018 27.9 2.7 52 10-64 132-195 (213)
243 PF12436 USP7_ICP0_bdg: ICP0-b 21.2 2E+02 0.0043 26.1 5.2 43 2-47 178-223 (249)
244 COG0089 RplW Ribosomal protein 21.2 2.2E+02 0.0047 22.5 4.7 60 10-72 21-90 (94)
245 PRK01777 hypothetical protein; 21.2 4E+02 0.0088 20.7 7.4 62 1-74 4-75 (95)
246 PF07108 PipA: PipA protein; 21.1 1.7E+02 0.0036 25.6 4.4 40 182-221 32-82 (200)
247 PRK03430 hypothetical protein; 20.6 1.2E+02 0.0025 26.1 3.4 25 151-178 21-45 (157)
248 KOG4248 Ubiquitin-like protein 20.6 61 0.0013 35.7 1.9 65 7-74 331-395 (1143)
249 PF11848 DUF3368: Domain of un 20.4 1.8E+02 0.0038 19.6 3.6 26 152-180 20-47 (48)
No 1
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.4e-45 Score=346.64 Aligned_cols=191 Identities=41% Similarity=0.643 Sum_probs=132.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|++|.|+|++++||.+||++|++..|++.+++++|||||+||+|+|+++|++|||+++++|+||++|+|..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k~~ 80 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPKTG 80 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCCCC
Confidence 99999999999999999999999999999999987544899999999999999999999999999999999999988774
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCC-CCccccCCCCCCccccccccCCCCccHHH
Q 024466 81 GSAGASSAQPA-HTTPPTTAPSSNSTPPQEASVPPPAPTPSIPA---SNV-TSNVTAANANSDTYGQAASNLVAGNDLEQ 155 (267)
Q Consensus 81 ~~~~s~~~~~p-~~~~p~~a~~~~~~p~~~p~~~~~~~~~~~~p---~~~-~~~~~~~~~~~~~~~~a~s~l~~g~~~e~ 155 (267)
+...+++..++ +++.+. .+....|+..+..++.+..+..++ +++ +...+++.....+...+.|+|++|+++|+
T Consensus 81 ~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~g~~~e~ 158 (378)
T TIGR00601 81 TGKSAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLVVGSERET 158 (378)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCccccccCCCcccccccchHHHH
Confidence 33222111111 111111 000000111110000000000000 000 00000000011102257789999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcc
Q 024466 156 TIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRIT 197 (267)
Q Consensus 156 ~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~ 197 (267)
+|++||+|| |+|+||++||||||||||||||||++| ||
T Consensus 159 ~I~~i~eMG---f~R~qV~~ALRAafNNPdRAVEYL~tG-IP 196 (378)
T TIGR00601 159 TIEEIMEMG---YEREEVERALRAAFNNPDRAVEYLLTG-IP 196 (378)
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHhCCHHHHHHHHHhC-CC
Confidence 999999999 999999999999999999999999999 55
No 2
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-40 Score=306.02 Aligned_cols=174 Identities=49% Similarity=0.719 Sum_probs=132.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|++|+|++.+++||.++|++|+...|.| +|++.|+|||+||+|+|+.++++|+|+++++|+||++|+|.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~d-yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k~- 78 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPD-YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDKS- 78 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCC-CchhhheeeecceeccCCcchhhhccccCceEEEEEecCcc-
Confidence 8999999999999999999999999999999999988 99999999999999999999999999999999999999883
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCccccccccCCCCccHHHHHHHH
Q 024466 81 GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160 (267)
Q Consensus 81 ~~~~s~~~~~p~~~~p~~a~~~~~~p~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~s~l~~g~~~e~~I~~l 160 (267)
...+. ++.. .++ ...+....+|. .+.++...|+ + .+.++....++.+.++|++|.++|++|.+|
T Consensus 79 ~~t~~----ap~s-~~~---~~~p~~~~ap~---~s~a~~~s~~----~-~~~~~~~~~~~~aas~Lv~G~~~e~~V~~I 142 (340)
T KOG0011|consen 79 ASTQV----APQS-SAA---THLPKAAEAPP---SSAAEDASPA----T-PAQTSQEDTYEIAASTLVVGSEYEQTVQQI 142 (340)
T ss_pred cccCC----CCCC-ccc---cCCCccCCCCC---ccccccCCCC----c-cccccccchhhhhhhhhhccchhHHHHHHH
Confidence 11111 0000 000 00000000010 0000110110 0 011122344678899999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 161 ~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
|+|| |+||+|++||||||||||||||||++|.
T Consensus 143 m~MG---y~re~V~~AlRAafNNPeRAVEYLl~GI 174 (340)
T KOG0011|consen 143 MEMG---YDREEVERALRAAFNNPERAVEYLLNGI 174 (340)
T ss_pred HHhC---ccHHHHHHHHHHhhCChhhhHHHHhcCC
Confidence 9999 9999999999999999999999999964
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.79 E-value=6.2e-19 Score=131.44 Aligned_cols=73 Identities=30% Similarity=0.449 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+++.++|++++||++||++|+++.| +++++|+|+|+||.|+|+.+|++|||+++++|+++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g---i~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN---VPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999863
No 4
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.77 E-value=3.3e-18 Score=127.67 Aligned_cols=75 Identities=53% Similarity=0.774 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNY--PCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~i--p~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| + ++++|+|+|+|+.|+|+.+|++|||++|++|++++++++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~---i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKG---CDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 7 999999999999999999999999999999999998764
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.75 E-value=4.7e-18 Score=128.80 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSH-FEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~-~~Ie-Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|++ +.++ +++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||+++++|+++++..
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g---i~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN---VEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC---CCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 7895 8999999999999999999 999999999999999999999999999999999998753
No 6
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.74 E-value=6.8e-18 Score=126.55 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+||++.|+.+.+++++++||++||++|++..| +++++|||+|+|++|+|+++|++|||++|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~---~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999998 999999999999999999999999999999999863
No 7
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=8.9e-18 Score=125.29 Aligned_cols=73 Identities=26% Similarity=0.315 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+. +++.++|++++||.+||++|++..| +|+++|+|+|+||.|+|+.+|++|||+++++|+++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG---IDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC---CCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 89999984 6899999999999999999999999 9999999999999999999999999999999999988653
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.73 E-value=1.9e-17 Score=123.40 Aligned_cols=74 Identities=30% Similarity=0.451 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|+++.+++++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG---IDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998754
No 9
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.72 E-value=2.1e-17 Score=124.89 Aligned_cols=72 Identities=25% Similarity=0.414 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+.+.++++++.||++||++|++..| +++++|||+|+||+|+|+ +|++|||++|++|+++.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~---~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLK---VPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhC---CChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 89999999999999999999999999999999998 899999999999999999 9999999999999999865
No 10
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.72 E-value=3.2e-17 Score=130.55 Aligned_cols=75 Identities=41% Similarity=0.609 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||++.|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|+|+++++|+++++.++
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987643
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.71 E-value=7.8e-17 Score=119.31 Aligned_cols=74 Identities=38% Similarity=0.583 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|||+|+|+.|.|+.+|++|+|++|++|+++++.+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhC---CChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998753
No 12
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=3.6e-17 Score=123.95 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL--IHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL--Iy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+++.+++++++||.+||++|++..| +++++||| +|+|++|+|+.+|++|||++|++|++++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~---i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIG---VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhC---CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 78999999999999999999999999999999999 89999999 999999999999999999999999999975
No 13
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=4.9e-17 Score=121.29 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=69.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+||++.|+++.+++++++||.+||++|++..| +|+++|+|+|+||.|+|+.+|++|||+++++|+++++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER---VQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999 999999999999999999999999999999999998754
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=5.2e-17 Score=120.65 Aligned_cols=69 Identities=29% Similarity=0.436 Sum_probs=66.6
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++||.++|+++.+++++++||.+||++|++..| +|+++|||+|+|++|+|+.+|++|||+++++|+|++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g---i~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG---VDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 468999999999999999999999999999999 999999999999999999999999999999999987
No 15
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=9.9e-17 Score=118.74 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC---CCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999 899999999999999999999999999999999998754
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=7e-17 Score=119.01 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=67.2
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+||++.|+++.+++++++||++||++|+++.| +|+++|+|+|+|+.|+|+.+|++|||+++++|+++.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG---VPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC---CCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999 8999999999999999999999999999999998864
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.69 E-value=1.4e-16 Score=116.80 Aligned_cols=72 Identities=33% Similarity=0.498 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+++|+.+.+++++++||.+||++|++..| ++++.|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG---IPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 89999999999999999999999999999999999 8999999999999999999999999999999998863
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.69 E-value=1.4e-16 Score=117.75 Aligned_cols=71 Identities=28% Similarity=0.363 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+.+|+ +.+++++++||.+||++|++..| ++.++|+|+|+||.|+|+.+|++|||++|++|+++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~---i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK---ANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 58999999999999999999999 8999999999999999999999999999999999864
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.68 E-value=1.2e-16 Score=121.75 Aligned_cols=73 Identities=22% Similarity=0.156 Sum_probs=64.6
Q ss_pred CEEEEEeCCCcE--EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcC--CCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSH--FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNK--VSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~--~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~g--IkegstIvv~v 74 (267)
|.|+||+.+|++ |.+++++++||++||++|++..+.. .++++|||||+||+|+|+.+|++|+ ++++.+||++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~-~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSK-PLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCC-CChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 5556689999999999999987521 5689999999999999999999996 99999999986
No 20
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.66 E-value=3.1e-16 Score=114.46 Aligned_cols=68 Identities=38% Similarity=0.604 Sum_probs=65.4
Q ss_pred EeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 6 KTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 6 Ktl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+++|+.+.++|++++||.+||++|++..| +|++.|+|+|+|++|+|+.+|++|||++|++|++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG---IPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT---STGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc---cccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 688999999999999999999999999999 99999999999999999999999999999999998865
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.64 E-value=8.3e-16 Score=115.38 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy---~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|| ++|++|.++|++++||.+||++|++..| +|+++|||+| +||+|+|+.+|++|+|++|++|+||.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tg---vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTG---VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHC---CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 689999 7899999999999999999999999999 9999999996 99999999999999999999999985
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.63 E-value=1e-15 Score=113.64 Aligned_cols=68 Identities=32% Similarity=0.401 Sum_probs=64.2
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCc-cchhhcCCCCCCEEEEE
Q 024466 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVM 73 (267)
Q Consensus 3 ItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~-~tLsd~gIkegstIvv~ 73 (267)
|+||+. +|+++.+++++++||.+||++|++..| +|+++|+|+|+||.|+|+ .+|++|||++|++|++-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG---IPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC---CCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 899999999999999999999999999 999999999999999987 68999999999999873
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.60 E-value=3.5e-15 Score=109.33 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+||+. |+.+.+++++++||.+||++|++..| +++++|||+|+|+.|.|+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g---i~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG---VEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC---CChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 88999999999999999999999999 999999999999999999999999999999999874
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=8.1e-15 Score=110.03 Aligned_cols=68 Identities=28% Similarity=0.435 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
++|+++.+++++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETG---MPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 5789999999999999999999999999 9999999999999999999999999999999999998654
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.9e-15 Score=107.55 Aligned_cols=70 Identities=36% Similarity=0.554 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|.|.||+++|+.+.|++++.++|..+|++|+++.| +|+.+|||||.||.+.|+++-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeG---IPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcC---CCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 88999999999999999999999999999999999 99999999999999999999999999999999874
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.49 E-value=9.6e-14 Score=134.85 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
++|+||+.++ ++.+.|..+.||++||++|...++ +++++++|||+||+|+|+++|..|||++|.+|||+++....+
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~---a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFG---APPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcC---CChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 4799999988 889999999999999999999998 899999999999999999999999999999999998765444
Q ss_pred C
Q 024466 81 G 81 (267)
Q Consensus 81 ~ 81 (267)
.
T Consensus 92 ~ 92 (493)
T KOG0010|consen 92 T 92 (493)
T ss_pred C
Confidence 3
No 27
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.49 E-value=1.1e-13 Score=98.32 Aligned_cols=64 Identities=45% Similarity=0.703 Sum_probs=61.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDG 68 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegs 68 (267)
|+|+||+.+ +.+.++|++++||.+||++|+...| +++++|+|+|+|+.|.|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG---IPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7899999999999999999999999 899999999999999999999999999875
No 28
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.8e-15 Score=117.09 Aligned_cols=76 Identities=41% Similarity=0.575 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|.++++++.|++..+++++++||..||.+|....| +|++.|+|+|+||+|+|..||++|||+..++|+++.+..+.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~G---i~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccC---CCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999887664
No 29
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.45 E-value=5.7e-13 Score=102.69 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|.|+|++.+|+.+.++|.+++|+..||+++++..| +++++|+|+|+|+.|+|+.|+++|+|.+|++|+|+++..+
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g---i~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG---LSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC---CCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987643
No 30
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=8.3e-14 Score=117.36 Aligned_cols=79 Identities=35% Similarity=0.503 Sum_probs=74.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+|+++.+++..+++++++||..+|++|++..| ||+++|||||.|+.|+|..+|+||+|+..++|+++++.++..
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~eg---Ip~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccC---CCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876655
Q ss_pred CC
Q 024466 81 GS 82 (267)
Q Consensus 81 ~~ 82 (267)
..
T Consensus 78 kk 79 (156)
T KOG0004|consen 78 KK 79 (156)
T ss_pred cc
Confidence 43
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.41 E-value=2.8e-13 Score=102.15 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCC-CCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 19 PSDTVMAVKKNIEDVQGKDNY-PCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 19 ~s~TV~dLK~kI~~~~g~d~i-p~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
.++||.+||++|+++.+.. + ++++|||||+||+|+|+++|++|||++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~eg-i~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDS-LPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccC-CCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4679999999999996322 4 58999999999999999999999999999999875
No 32
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.34 E-value=2.7e-12 Score=103.44 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=62.6
Q ss_pred EEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCC--CCCC--CCCeEEEeCCeecCCccchhhcC------CCCCCEE
Q 024466 2 KLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGK--DNYP--CGQQLLIHNGKVLKDETTLADNK------VSEDGFL 70 (267)
Q Consensus 2 kItVKtl~gk~~-~IeVd~s~TV~dLK~kI~~~~g~--d~ip--~~~QrLIy~GKiL~D~~tLsd~g------IkegstI 70 (267)
.|.||-.+|..+ ...+++++||.+||++|++..+. ..+| +++|||||+||+|+|++||++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 577887788554 45677999999999999966641 1144 99999999999999999999999 7777899
Q ss_pred EEEeecCC
Q 024466 71 VVMLSKSK 78 (267)
Q Consensus 71 vv~v~k~k 78 (267)
||+++.+.
T Consensus 86 Hvvlr~~~ 93 (113)
T cd01814 86 HVVVQPPL 93 (113)
T ss_pred EEEecCCC
Confidence 99987544
No 33
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.34 E-value=5.7e-12 Score=90.57 Aligned_cols=68 Identities=46% Similarity=0.665 Sum_probs=64.2
Q ss_pred EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 4 TVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 4 tVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
+||..+|+.+.++++++.||++||++|++..| +++++|+|+|+|+.|+|+.+|++|++++++.|+++.
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~---~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEG---VPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 37888899999999999999999999999999 899999999999999999999999999999999875
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.32 E-value=6.2e-12 Score=94.71 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=58.6
Q ss_pred EeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC-CccchhhcCCC-CCCEEEEEe
Q 024466 6 KTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLK-DETTLADNKVS-EDGFLVVML 74 (267)
Q Consensus 6 Ktl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~-D~~tLsd~gIk-egstIvv~v 74 (267)
|...|.++.+++++++||.+||++|++..| +|++.||| |.|+.|. |+.+|++|||+ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~g---ip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYG---FPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 444678999999999999999999999999 99999999 9999985 67999999999 889999864
No 35
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.21 E-value=6e-11 Score=87.31 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~-~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|++.+|+.+.+.|.+++++..|++++++..| ++. +.++|+|.|+.|+++.|++++||.+|++|.|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~---i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKG---IPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHT---TTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhC---CCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999 888 999999999999999999999999999999874
No 36
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=99.14 E-value=8.1e-11 Score=76.93 Aligned_cols=36 Identities=47% Similarity=0.741 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYL 191 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYL 191 (267)
.++.|++|++|| |++++|++||+++.||.|+|++||
T Consensus 2 ~~~~v~~L~~mG---f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMG---FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHT---S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 478999999999 999999999999999999999998
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.02 E-value=8.8e-10 Score=87.11 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=56.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-ccchhhcCCCCCCEEEEEeec
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD-ETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D-~~tLsd~gIkegstIvv~v~k 76 (267)
...++|++++||++||.+|...++ +++.+|+|+|.|+.|.| .++|++|||..++.|.+.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~---V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFS---VAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhc---CCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 457889999999999999999999 99999999999999965 689999999999999998753
No 38
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.95 E-value=1.4e-09 Score=70.96 Aligned_cols=37 Identities=41% Similarity=0.767 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++.|++|++|| |++++|++||+++.||.++|++||++
T Consensus 2 ~~~v~~L~~mG---f~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMG---FSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 57899999999 99999999999999999999999974
No 39
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.92 E-value=1.2e-08 Score=82.43 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=52.1
Q ss_pred EEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCC----CCCCCCeEEEeCCeecCCccchhhcCCCCCCE
Q 024466 2 KLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKD----NYPCGQQLLIHNGKVLKDETTLADNKVSEDGF 69 (267)
Q Consensus 2 kItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d----~ip~~~QrLIy~GKiL~D~~tLsd~gIkegst 69 (267)
.|+++-.+|+ .-.+.+++++||.+||+.|...-..+ ...++.+||||.||+|+|+.+|++|++..|+.
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence 5777878998 77889999999999999999765433 12456789999999999999999999988774
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.92 E-value=1.2e-08 Score=72.42 Aligned_cols=72 Identities=44% Similarity=0.612 Sum_probs=67.7
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
+++++..|+.+.+++.++.+|..+|.+|+...| ++.++|++.+.|+.|.|+.+|.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~---~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEG---IPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcC---CCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 578889999999999999999999999999999 899999999999999999999999999999999887654
No 41
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.91 E-value=2e-09 Score=69.85 Aligned_cols=36 Identities=44% Similarity=0.769 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
++.|++|++|| |++++|.+||++..||.++|++||+
T Consensus 2 ~~~v~~L~~mG---f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMG---FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 67899999999 9999999999999999999999996
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.89 E-value=5.4e-09 Score=98.07 Aligned_cols=70 Identities=34% Similarity=0.444 Sum_probs=61.8
Q ss_pred CEEEEEeCCCcEE---EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C----eecCCccchhhcCCCCCCEE
Q 024466 1 MKLTVKTLKGSHF---EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G----KVLKDETTLADNKVSEDGFL 70 (267)
Q Consensus 1 MkItVKtl~gk~~---~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~---G----KiL~D~~tLsd~gIkegstI 70 (267)
|+|+|+..+|+.+ +++++++.||++||++|+++.+. +++++|||++. | +.|+|+++|+|+|+++|++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~--~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK--YYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC--CChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceE
Confidence 8999998888886 79999999999999999999872 47899999983 4 48899999999999999987
Q ss_pred EE
Q 024466 71 VV 72 (267)
Q Consensus 71 vv 72 (267)
++
T Consensus 79 y~ 80 (308)
T PLN02560 79 VF 80 (308)
T ss_pred EE
Confidence 65
No 43
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.89 E-value=1.2e-08 Score=78.28 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=58.9
Q ss_pred EEEEEeCC-CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCe-----ec-CCccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLK-GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL-IHNGK-----VL-KDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~-gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL-Iy~GK-----iL-~D~~tLsd~gIkegstIvv~ 73 (267)
+|.|+... ....+..+++++||.+||++++..+| ++++.|+| +|.|+ .| +|+++|++||+++|..|||+
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G---~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVG---TPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHC---CCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 56666543 33445569999999999999999999 89999999 58888 45 67889999999999999987
Q ss_pred ee
Q 024466 74 LS 75 (267)
Q Consensus 74 v~ 75 (267)
-.
T Consensus 80 D~ 81 (84)
T cd01789 80 DV 81 (84)
T ss_pred eC
Confidence 54
No 44
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.7e-09 Score=107.06 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=67.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.|+||+++.++.++.++..+||++||.+|.++.+ |+.+.|||||.|++|.|++++.+||| +|.+|||+-+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~n---i~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVN---IPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcc---cccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 4789999999999999999999999999999999 99999999999999999999999999 89999998773
No 45
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.72 E-value=4.1e-08 Score=73.77 Aligned_cols=69 Identities=26% Similarity=0.264 Sum_probs=54.6
Q ss_pred EEEEEeCC-CcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLK-GSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLL--IHNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~-gk~~~IeVd-~s~TV~dLK~kI~~~~g~d~ip~~~QrL--Iy~GKiL~D~~tLsd~gIkegstIvv 72 (267)
.|.++..+ .....++++ ++.||.+||+.|++..+. +++++||| .+.|+.|.|+.+|+++||++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~--~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQ--LTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCC--CCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 46666555 333334444 788999999999988652 67899988 48999999999999999999999875
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.66 E-value=9.8e-08 Score=73.20 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=57.4
Q ss_pred EEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-C---e---ec-CCccchhhcCCCCCCEEE
Q 024466 2 KLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-G---K---VL-KDETTLADNKVSEDGFLV 71 (267)
Q Consensus 2 kItVKtl~g--k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~-G---K---iL-~D~~tLsd~gIkegstIv 71 (267)
+|.|..... ...+..++.++||.+||.+|+...| ++++.|+|.+. . . .+ +|+++|++||+++|..|+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~G---i~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTG---IPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHT---S-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhC---CCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 567776654 4788899999999999999999999 99999999776 2 1 23 567899999999999999
Q ss_pred EEeec
Q 024466 72 VMLSK 76 (267)
Q Consensus 72 v~v~k 76 (267)
|.=..
T Consensus 80 V~D~~ 84 (87)
T PF14560_consen 80 VVDTN 84 (87)
T ss_dssp EEE-T
T ss_pred EEeCC
Confidence 87543
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.57 E-value=2.3e-07 Score=75.03 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=59.6
Q ss_pred CEEEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCC-------CCCCEEEE
Q 024466 1 MKLTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-------SEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gI-------kegstIvv 72 (267)
|-++++-. +..++.+++.++.||.+||++|+.... .|+++|+|+-.+.+|+|++||+|||+ +...+|-+
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k---~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgL 77 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILK---RPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGL 77 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhc---CChhHheeecCceeecccccHHHcCccccccccCCCCeEEE
Confidence 34444433 344677899999999999999999998 89999999977789999999999999 55777777
Q ss_pred Eeec
Q 024466 73 MLSK 76 (267)
Q Consensus 73 ~v~k 76 (267)
.+++
T Consensus 78 a~r~ 81 (119)
T cd01788 78 AFRS 81 (119)
T ss_pred EEec
Confidence 7764
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.49 E-value=2.2e-07 Score=70.89 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=43.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---Ceec--CCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---GKVL--KDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~---GKiL--~D~~tLsd~gIkegstIvv 72 (267)
|-|.||+.+| .+.|++++++|+.+||++|.+..+ ++.+.+.|..+ ...| .++++|+++||+.||.|++
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~---~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLS---IPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcC---CCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 5688998877 788999999999999999999999 88888877432 1244 4678999999999999986
No 49
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.46 E-value=1.4e-06 Score=58.18 Aligned_cols=67 Identities=34% Similarity=0.447 Sum_probs=60.3
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 5 VKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+..+|....+.+.++.||.+||++|.++.| .+++.++|+++|..+.+...+.++++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG---LPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC---cChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444678888999999999999999999999 789999999999999999988999999999998864
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.6e-06 Score=80.85 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=66.2
Q ss_pred EEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 2 KLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 2 kItVKtl~gk~~~Ie-Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
.|.|| +.|+.+.++ ++.++|+..||.++....| ++|++||++++|+.+.|+-.+..++||+|.+|++|.+.-
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTg---V~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTG---VPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcC---CCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 36667 789999988 9999999999999999999 999999999999999999999999999999999998653
No 51
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.6e-06 Score=78.17 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=63.9
Q ss_pred CEEEEEeC---CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTL---KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl---~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|.+.|+.. ....+.|+|+.+..|.+||+.++...| +|+++.++||.||.|.|+.++..+.+...+.+|+|.-++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~g---vp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQG---VPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhC---CChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 66777654 224588999999999999999999999 999999999999999999999999888888998885443
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.90 E-value=8.5e-05 Score=56.03 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=61.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~---G--KiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
++|+|+-.....+.+.|+|..+|..+|++|....| + ...|||-|. | ..|.+.++|++|||-.+-.|-|+-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~---~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRN---C-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhC---c-ccceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 58999999889999999999999999999999998 4 459999884 3 3678999999999998777777654
No 53
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=59.11 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=59.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
.+.+...-|++..+.+.+++||+|+|+.|+.+.| -.++...|--.+.+++|.-+|++|.|++|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtG---T~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhC---CChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 4556666799999999999999999999999999 66788887767778999999999999999877654
No 54
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.58 E-value=0.00019 Score=56.82 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=47.2
Q ss_pred EEEEeCCC-cEEEEEeC--CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcC
Q 024466 3 LTVKTLKG-SHFEIRVQ--PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNK 63 (267)
Q Consensus 3 ItVKtl~g-k~~~IeVd--~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~g 63 (267)
|+||..++ ..+.+++. .+.||..||+.|.+..+.+ ..-.++||||+||+|.|+..|+..-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~-~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPE-PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCC-CccccEEeeecCcccCccchhhhhh
Confidence 66776653 34677777 7899999999999998532 5667889999999999988877653
No 55
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.4e-05 Score=77.41 Aligned_cols=40 Identities=38% Similarity=0.659 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+..|+.|..|++|| |.|.|+++||++..||++|||||+++
T Consensus 633 ~~~e~~v~si~smG---f~~~qa~~aL~~~n~nveravDWif~ 672 (763)
T KOG0944|consen 633 EVDEESVASIVSMG---FSRNQAIKALKATNNNVERAVDWIFS 672 (763)
T ss_pred CCChhHheeeeeec---CcHHHHHHHHHhcCccHHHHHHHHHh
Confidence 56789999999999 99999999999999999999999999
No 56
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=97.46 E-value=0.00017 Score=48.15 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
++.|+.|.+|= -.++++.++++|++..+|.|+|+++|+.+
T Consensus 2 ~~~v~~L~~mF-P~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMF-PDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHS-SSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 67899999992 22999999999999999999999999975
No 57
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.45 E-value=0.00021 Score=56.42 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=49.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CC-eecCCccchhhcCCCC
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NG-KVLKDETTLADNKVSE 66 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~G-KiL~D~~tLsd~gIke 66 (267)
|.||- ...++.++.+++.||-+||.+++.... -|++.|||.. .. .+|+|.++|+|||...
T Consensus 5 ~~VrR-~kttif~da~es~tV~elK~~l~gi~~---~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 5 LRVRR-HKTTIFTDAKESSTVFELKRKLEGILK---RPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeee-cceeEEeecCccccHHHHHHHHHHHHh---CCCcchheeecCHHHHhhccchhhhccccc
Confidence 44552 345677899999999999999999988 6999999976 33 6889999999998753
No 58
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0014 Score=51.92 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
+|.|+.-++....+.|..+...+.|++.-++..| +.....|++|.|+.+.+..|=.+++..+||.|-++...
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~G---l~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQG---LSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcC---CccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 4666765566778889999999999999999999 88999999999999999999999999999999988643
No 59
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.28 E-value=0.00055 Score=51.57 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=50.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CeEEE-eCCeecCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG---QQLLI-HNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~---~QrLI-y~GKiL~D~~tLsd~gIkegstIvv 72 (267)
+|+|...+|+.+.+.+..+.+|.+|...|.+..+.+..... ..+|. -+|..|+++.+|+++||.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 57777655688999999999999999999998873212222 35666 7899999999999999999999986
No 60
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=4.6e-05 Score=71.88 Aligned_cols=75 Identities=23% Similarity=0.181 Sum_probs=56.0
Q ss_pred EEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCC--CCEEEEEeecC
Q 024466 2 KLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE--DGFLVVMLSKS 77 (267)
Q Consensus 2 kItVKtl~gk--~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIke--gstIvv~v~k~ 77 (267)
.+.||..+.+ ...|..+..+||++||..++.....+ --..+|||||+||.|.|...|.|.=+|. ...+||++..+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk-pl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcnsk 89 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK-PLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNSK 89 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC-CchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 4667776654 45677788899999999999988643 2356899999999999999999985543 33555555433
No 61
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.13 E-value=0.0034 Score=47.09 Aligned_cols=68 Identities=26% Similarity=0.302 Sum_probs=56.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEE--eCCeecCCc--cchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLI--HNGKVLKDE--TTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~-QrLI--y~GKiL~D~--~tLsd~gIkegstIvv 72 (267)
+|.||..+|+.+.-.+..++||.+|...|..... .+... ..|+ |-.+.|.++ ++|+++|+.++.+|+|
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~---~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLF---SPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHH---CTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcC---CCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 6889999999999999999999999999998877 33333 6775 677888654 6999999999998876
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.07 E-value=0.0047 Score=46.44 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=55.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---ccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD---ETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D---~~tLsd~gIkegstIvv 72 (267)
+|.||..+|+.+...+..++||.+|.+.|....+ .......|+ |-.|.|.+ +.+|.++|+..+.+|+|
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~---~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT---DGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc---CCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 6889999999999999999999999999966555 344566775 66788864 47999999998888765
No 63
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.96 E-value=0.0082 Score=44.76 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---ccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD---ETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D---~~tLsd~gIkegstIvv~ 73 (267)
+|.||..+|+.+.-.+..++||.+|.+.|..... ......|+ |-.|.+.| +.+|+++|+. .+.+.+.
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~----~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGP----PAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCC----CCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 6889999999999899999999999999987654 24556775 56788854 7899999999 4555543
No 64
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.87 E-value=0.0012 Score=63.78 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
++-.++|++|++|| |+|+.|+.|-.|+..|-+.|++||+..
T Consensus 335 ~eE~~AIeRL~~LG---F~r~~viqaY~ACdKNEelAAn~Lf~~ 375 (378)
T TIGR00601 335 PEEKEAIERLCALG---FDRGLVIQAYFACDKNEELAANYLLSQ 375 (378)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 44578999999999 999999999999999999999999974
No 65
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.83 E-value=0.011 Score=44.71 Aligned_cols=67 Identities=21% Similarity=0.364 Sum_probs=55.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC---ccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD---ETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D---~~tLsd~gIkegstIvv 72 (267)
+|.||..+|+.+.-.+..++||.+|.+.|....+ ......|+ |-.|.+.+ +.+|.++|+.+..+|+|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~----~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG----NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC----CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 6889999999998899999999999999987654 22556775 77888864 48999999999888875
No 66
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=96.78 E-value=0.0041 Score=41.52 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=36.4
Q ss_pred HHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 153 LEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 153 ~e~~I~~l~eM--G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.++.|..|.+| . .+++.|++.|++..||.|+|++.|+.++
T Consensus 2 ~~~~v~~L~~mFP~---l~~~~I~~~L~~~~g~ve~~i~~LL~~~ 43 (43)
T smart00546 2 NDEALHDLKDMFPN---LDEEVIKAVLEANNGNVEATINNLLEGS 43 (43)
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 36789999999 5 8999999999999999999999999864
No 67
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.76 E-value=0.012 Score=44.56 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-ccchhhcCCCCCCEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSEDGFLV 71 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D-~~tLsd~gIkegstIv 71 (267)
+|-||..+|+.+...+..++||.+|.+.|....+. .......|+ |-.|.|.| +.||+|.|+.+ +.|+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~--~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPE--FAARPFTLMTAFPVKELSDESLTLKEANLLN-AVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCC--CCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEEE
Confidence 68899999999999999999999999999987641 123556675 77888865 78999999995 4443
No 68
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0028 Score=55.55 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=42.8
Q ss_pred CCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 147 l~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
...+..+...|++|.+|| |+|+.+..+|+-+.-|.++|.|+|++|
T Consensus 156 ~~~~~~~~~~v~~l~~mG---f~~~~~i~~L~~~~w~~~~a~~~~~s~ 200 (200)
T KOG0418|consen 156 LPDDPWDKKKVDSLIEMG---FSELEAILVLSGSDWNLADATEQLLSG 200 (200)
T ss_pred CCCCchhHHHHHHHHHhc---ccHHHHHHHhhccccchhhhhHhhccC
Confidence 667889999999999999 999999999999999999999999986
No 69
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.54 E-value=0.006 Score=55.90 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=53.4
Q ss_pred CEEEEEeCCCc-EE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE----EeCCeecCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGS-HF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL----IHNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk-~~-~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL----Iy~GKiL~D~~tLsd~gIkegstIvv 72 (267)
|+|++.+.++. .. ..+...+.||+|+++.|..+... +.+..+|+ --+||.|.|+.+|++||..+|++|+|
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k--~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLK--ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhc--cCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 88999887662 33 36777889999999888876653 44544433 45799999999999999999977765
No 70
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.54 E-value=0.013 Score=43.20 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEE
Q 024466 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 7 tl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv 72 (267)
..+++.+.+.+.++.++.++-+..++++| +.+++-.|.|++|.|+-+.++.-.|+.+|..+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~---l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFG---LDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT-----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcC---CCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 46788999999999999999999999999 8888999999999999999999999999988764
No 71
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.52 E-value=0.011 Score=44.63 Aligned_cols=71 Identities=13% Similarity=0.267 Sum_probs=57.7
Q ss_pred EEE--EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCeEEEeCCeecCCccchhhcCCCCCCEEEE
Q 024466 2 KLT--VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP--CGQQLLIHNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kIt--VKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip--~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv 72 (267)
+|+ ++...|.++.+.+..-.+|+.|-..+.+....+-.+ -..+|..-++++|.++..|.+|+|.+||.+.+
T Consensus 6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 444 467789999999999999999998888776632112 24568899999999999999999999999875
No 72
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0085 Score=53.59 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=54.5
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCC--EEEEEee
Q 024466 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDG--FLVVMLS 75 (267)
Q Consensus 9 ~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegs--tIvv~v~ 75 (267)
.++.|.+.+..-+||+++|.++.+..| ..+..|++.|+|++|.|...|..|+|..|. +|.+.|.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg---~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEG---VDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL 220 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhc---cchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence 456677888888999999999999999 668899999999999999999999999994 4444443
No 73
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.16 E-value=0.054 Score=41.65 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK---DETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~---D~~tLsd~gIkegstIvv~ 73 (267)
+|.||..+|+...-.+..++++.+|-..|.. .| .+.+..+|+ |--|.+. .+.+|.++|+.+..+|+|-
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g---~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KG---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cC---CCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 6899999999999999999999999999998 46 577888887 6677773 3589999999999998874
No 74
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=96.00 E-value=0.0083 Score=56.79 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
++-.++|.+|.+|| |+|.-|+.|--|+.-|=+-|++||++.+
T Consensus 296 pee~eAIeRL~alG---F~ralViqayfACdKNEelAAN~Ll~~~ 337 (340)
T KOG0011|consen 296 PEEKEAIERLEALG---FPRALVIQAYFACDKNEELAANYLLSHS 337 (340)
T ss_pred HHHHHHHHHHHHhC---CcHHHHHHHHHhcCccHHHHHHHHHhhc
Confidence 34578999999999 9999999999999999999999999865
No 75
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.98 E-value=0.065 Score=41.25 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=54.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecC--------CccchhhcCCCCCCEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG--KVLK--------DETTLADNKVSEDGFLV 71 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G--KiL~--------D~~tLsd~gIkegstIv 71 (267)
+|-||..+|+.+.-.+..++||.+|..-|.. .+ ..++...|+++= |.+. .+.||++.|+.+..+|.
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~---~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LK---ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CC---CCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 6889999999988889999999999999964 44 356788887543 7775 36799999999887776
Q ss_pred E
Q 024466 72 V 72 (267)
Q Consensus 72 v 72 (267)
|
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 5
No 76
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.53 E-value=0.13 Score=39.05 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=56.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-ccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--D-ETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~--D-~~tLsd~gIkegstIvv 72 (267)
+|.||..+|+...-....++++.+|-..|... | .+.+..+|+ |--|.+. | +.+|.+.|+....+|+|
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~---~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-G---YPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-C---CCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 68899999999888899999999999999875 5 566788886 6778874 2 57999999999888876
No 77
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.48 E-value=0.12 Score=44.67 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=53.9
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEe-CCeec--CCccchhhcCCCCC--CE-
Q 024466 1 MKLTVKTLKG----SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIH-NGKVL--KDETTLADNKVSED--GF- 69 (267)
Q Consensus 1 MkItVKtl~g----k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q-rLIy-~GKiL--~D~~tLsd~gIkeg--st- 69 (267)
|.|.|++++| .++.+.+.++.||.+|+.+|.+..+ ++...+ .|.+ .++.| .++..++++.-.++ ++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~---~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP---IPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFI 77 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC---CCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCce
Confidence 7899999999 5888999999999999999999998 666663 3444 34444 56667777755444 33
Q ss_pred -EEEEeecCC
Q 024466 70 -LVVMLSKSK 78 (267)
Q Consensus 70 -Ivv~v~k~k 78 (267)
+.|..+..+
T Consensus 78 ~l~l~~rl~G 87 (162)
T PF13019_consen 78 TLRLSLRLRG 87 (162)
T ss_pred EEEEEEeccC
Confidence 444554444
No 78
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.1 Score=40.98 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=58.7
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
+.|-.-+|..+.+.+..+.+...|-+..+...| -..+..|++|.|+.++-++|-+|++..+++.|.++.
T Consensus 27 Lkvv~qd~telfFkiKktT~f~klm~af~~rqG---K~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 27 LKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQG---KNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred eEEecCCCCEEEEEEeccchHHHHHHHHHHHhC---cCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 444445677778888899999999999999999 468899999999999999999999999998876543
No 79
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=94.52 E-value=0.043 Score=39.15 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
...|++.++|| |+|+.|+.|||--
T Consensus 10 ~~lVd~F~~mG---F~~dkVvevlrrl 33 (55)
T PF09288_consen 10 KDLVDQFENMG---FERDKVVEVLRRL 33 (55)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHHh
Confidence 67899999999 9999999999963
No 80
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.31 E-value=0.064 Score=53.29 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=37.8
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
...|..-.+++-+|| | +||.-.+||+|.+.|.++|||-|+.
T Consensus 451 e~r~q~QLeQL~~MG---F~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 451 EERYQTQLEQLNDMG---FLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred hHHHHHHHHHHHhcC---CccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 456788899999999 9 9999999999999999999999975
No 81
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=93.86 E-value=0.18 Score=36.45 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
..-.+|++|-|.-|+ ++.+++-+.|+-.++|||.||+=||+
T Consensus 4 ~~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 4 ASRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346799999999766 89999999999999999999999998
No 82
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.80 E-value=0.061 Score=53.11 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=49.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
++.....|-.++...|+++.| ++....|.|-+||+|.-.+||.+-|++.+..+.|.+.
T Consensus 54 ~k~sL~i~Gselqa~iakklg---i~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLG---IKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhcccccccHHHHHHHHHHcC---CchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 455556778899999999999 8888899999999999999999999998777666554
No 83
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.18 Score=45.26 Aligned_cols=59 Identities=24% Similarity=0.243 Sum_probs=49.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCC-----eecC-CccchhhcCCCCCCEEEEEe
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL-IHNG-----KVLK-DETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL-Iy~G-----KiL~-D~~tLsd~gIkegstIvv~v 74 (267)
+......+.||.+||.+++-..| .+++.++| +|.| ..|. ++..|..|+..+|-.||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G---~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTG---TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhC---CCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 44567789999999999999999 88999999 5776 2454 57789999999999999874
No 84
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.036 Score=55.51 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc---CCccc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS---VRITS 198 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~---~~~~~ 198 (267)
+-.|..++.|++|| |.-.+|++||--..+|.+|+|+|.++ |+.+|
T Consensus 619 eVdE~~~~Slle~G---ln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~E 666 (749)
T COG5207 619 EVDESKARSLLENG---LNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPE 666 (749)
T ss_pred cccHHHHHHHHHcC---CCHHHHHHHHHHccCCchheEEEEEeCCCCCCCC
Confidence 34688999999999 99999999999999999999999999 55555
No 85
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.42 E-value=0.15 Score=38.40 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=45.7
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhc-CCCCCCEEEEEe
Q 024466 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN-KVSEDGFLVVML 74 (267)
Q Consensus 17 Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~-gIkegstIvv~v 74 (267)
|.++++|.|+++-+...... ..-....|.++|+.|+|...|+++ |+++|..|.++-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccc--cceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999999987541 345567889999999999899888 689999888763
No 86
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=93.30 E-value=0.13 Score=39.63 Aligned_cols=35 Identities=31% Similarity=0.541 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 157 IQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 157 I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
|+.+.+.| |+++.|.+||.+.-+++..|..|++++
T Consensus 1 i~~~~~~g---~~~~~v~~aL~~tSgd~~~a~~~vl~~ 35 (87)
T PF11626_consen 1 IKHYEELG---YSREFVTHALYATSGDPELARRFVLNF 35 (87)
T ss_dssp -HHHHHHT---B-HHHHHHHHHHTTTBHHHHHHHHHHC
T ss_pred CchHHHhC---CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56688999 999999999999999999999999985
No 87
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=93.06 E-value=0.29 Score=32.63 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=30.9
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++.|.+.|+. | -+++.++.-|+++.+|.++||+.-+.
T Consensus 1 ~e~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 1 DEKIAQFMSITG---ADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHHH----SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHC---cCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4688999997 6 69999999999999999999987665
No 88
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=93.05 E-value=0.11 Score=35.47 Aligned_cols=37 Identities=22% Similarity=0.497 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
.++++..|+.+| |.+.++.+|++....+++.-+|-++
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 578999999999 9999999999998755555566654
No 89
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.18 Score=50.73 Aligned_cols=37 Identities=35% Similarity=0.653 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhc
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~ 193 (267)
..+|.+|++|| |+.+.+.|||-+..| +.+.|+.||+.
T Consensus 559 qs~I~qL~~mG---fp~~~~~rAL~~tgNqDaEsAMNWLFq 596 (749)
T COG5207 559 QSLIRQLVDMG---FPEEDAARALGITGNQDAESAMNWLFQ 596 (749)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHhhccCcchHHHHHHHHh
Confidence 56899999999 999999999999887 89999999998
No 90
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=91.95 E-value=0.72 Score=34.47 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=45.0
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCccchhhcCCCCCCEEE
Q 024466 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLV 71 (267)
Q Consensus 1 MkItVKtl~------g-k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~--~~QrLIy~GKiL~D~~tLsd~gIkegstIv 71 (267)
|+|+|+... | ....++++.+.||.+|++.+...... +.. ....+..+|+...+ +.-+++||.|.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~--l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVa 74 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS--LEEVRSCCVLALNEEYTTE-----SAALKDGDELA 74 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh--HHHHhhCcEEEECCEEcCC-----CcCcCCCCEEE
Confidence 678887543 3 44677888889999999999876521 111 12345678887653 34578899998
Q ss_pred EE
Q 024466 72 VM 73 (267)
Q Consensus 72 v~ 73 (267)
++
T Consensus 75 i~ 76 (82)
T PLN02799 75 II 76 (82)
T ss_pred Ee
Confidence 76
No 91
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.89 E-value=0.18 Score=49.98 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+..|.+|+.|| |++-.++.||++.-||.|.|.+.|+-
T Consensus 430 ~~~la~Lv~mG---F~e~~A~~ALe~~gnn~~~a~~~L~~ 466 (568)
T KOG2561|consen 430 GISLAELVSMG---FEEGKARSALEAGGNNEDTAQRLLSA 466 (568)
T ss_pred hhhHHHHHHhc---cccchHHHHHHhcCCcHHHHHHHHHH
Confidence 55799999999 99999999999999999999999986
No 92
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=91.44 E-value=0.31 Score=46.94 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=59.6
Q ss_pred CEEEEEeC--CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCc--cchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTL--KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE--TTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl--~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~--~tLsd~gIkegstIvv 72 (267)
|.++|-+. ..+.+.+++..+-....|+..+....| +..+..-|+|+++.|.++ ..+..||+++++++.+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g---~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTG---IVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhC---cccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 67777655 567889999999999999999999999 889999999999999764 6799999999999854
No 93
>PRK06437 hypothetical protein; Provisional
Probab=90.37 E-value=2.1 Score=31.23 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 9 ~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
.++...++++...||.+|-+. .| ++++...+..+|+++. .++-+++||.|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lg---i~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LG---LDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cC---CCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 445577888888999988765 46 7778888899999997 556788999998764
No 94
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=89.80 E-value=2.1 Score=30.77 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=39.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|. |+ .++++.+.|+.+||.++.. +.=.+||+|-..+++ +-+++||.|++.-
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~---------~~DI~I~NGF~~~~d-----~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKP---------DADIVILNGFPTKED-----IELKEGDEVFLIK 55 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCC---------CCCEEEEcCcccCCc-----cccCCCCEEEEEe
Confidence 666664 44 4677788899999987433 233679999988775 4567789998764
No 95
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.74 E-value=2.1 Score=31.30 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=46.2
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe----CC--eecCCccchhhcCCC
Q 024466 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH----NG--KVLKDETTLADNKVS 65 (267)
Q Consensus 5 VKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy----~G--KiL~D~~tLsd~gIk 65 (267)
|+.++|...+++++++.|+.+|=+.|++..|. ...+-.-|.| +| .-|+.+++|.+...+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l--~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGL--KEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTT--SSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCC--CCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 67789999999999999999999999999993 2444557777 22 236778889888776
No 96
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=89.32 E-value=0.52 Score=48.71 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh-cCChHHHHHHHhc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAA-YNNPERAVDYLYS 193 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAA-fnNpdRAvEYLl~ 193 (267)
.+..|.+|++|| |+.+.|.|||-.. ..+.+-|..||+.
T Consensus 571 d~s~i~qL~~MG---Fp~eac~rAly~tgN~~aEaA~NWl~~ 609 (763)
T KOG0944|consen 571 DRSVISQLVEMG---FPEEACRRALYYTGNSGAEAASNWLME 609 (763)
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHhhhcCccHHHHHHHHHH
Confidence 477899999999 9999999999999 6688999999997
No 97
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.31 E-value=2 Score=31.34 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=41.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC-CCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGK-DNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~-d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
...++++.+.||.+|.+.+....+. .........+..+|+... .+.-+++||.|.++-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p 75 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP 75 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence 4567887889999999999987541 001234556778999887 345688999998873
No 98
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.24 E-value=3.1 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=39.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
...++++.+.||.+|-+.+ + ++.+...+..+|+++.. +.-+++||.|.++-
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~---~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----G---FNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----C---CCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 5678888889999998765 5 56667777899999853 55688899988763
No 99
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.00 E-value=1.9 Score=33.41 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=38.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN 49 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~ 49 (267)
.+++|+.+|+...+.+.+++.+.+|++.|.++.|.+..+.....|.|-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 467899999999999999999999999999999933111246667663
No 100
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=87.79 E-value=2.3 Score=32.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK 51 (267)
++.|.+.++.+..+|.++|.++.+ ++++..+|-|+..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLk---l~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLE---LPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCchhcEEEeccC
Confidence 888999999999999999999999 8899999999754
No 101
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=87.18 E-value=0.31 Score=36.82 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.2
Q ss_pred CCC-CHHHHHHHHHHhcCChHHHHHHHhcCCccc
Q 024466 166 GTW-DKETVTRALQAAYNNPERAVDYLYSVRITS 198 (267)
Q Consensus 166 ~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~ 198 (267)
-+- ++.+++.||.-.|+|+++||.||++-....
T Consensus 41 ~~~~~e~~i~eal~~~~fDvekAl~~Ll~~~~~~ 74 (79)
T PF08938_consen 41 DYVPPEEQIKEALWHYYFDVEKALDYLLSKFKKK 74 (79)
T ss_dssp CCC--CCHHHHHHHHTTT-CCHHHHHHHHCCHSS
T ss_pred ccCCCHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 335 889999999999999999999999855443
No 102
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=86.49 E-value=3.5 Score=29.46 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+.+ + ..||.+|.+.+ + +..+...+-.+|+++. .....+.-+++||.|.++-
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~---~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----D---YEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----C---CCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEE
Confidence 55554 4666665 3 45899888764 4 5555667789999886 3445667789999998764
No 103
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=84.95 E-value=1.6 Score=38.80 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=32.3
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++|.+|-++ | ..=-+|..||..+.+|.|.|++||--
T Consensus 6 ~~ik~LR~~tg---a~~~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 6 KLVKELREKTG---AGMMDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 6 78899999999999999999999976
No 104
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=84.92 E-value=2.3 Score=43.14 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=7.5
Q ss_pred hhcceeeeeh
Q 024466 215 LTSRFRRYNV 224 (267)
Q Consensus 215 ~~~~~~~~~~ 224 (267)
|-|||.|-||
T Consensus 407 LdSRlkKRny 416 (574)
T PF07462_consen 407 LDSRLKKRNY 416 (574)
T ss_pred HHHHHHHHHH
Confidence 7788887775
No 105
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=84.86 E-value=6.2 Score=29.22 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=41.8
Q ss_pred CCc-EEEEEeCCC-CCHHHHHHHHHHHhCCCCC-CCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 9 KGS-HFEIRVQPS-DTVMAVKKNIEDVQGKDNY-PCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 9 ~gk-~~~IeVd~s-~TV~dLK~kI~~~~g~d~i-p~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
.|+ ...++++.+ .||.+|++.+.+..+. .. ......+..+|+...+ +.-|++||.|.++
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE-LAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch-hhhhccceEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 344 356888876 8999999999988641 01 1134566778888775 4678899999887
No 106
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=83.99 E-value=1.7 Score=40.82 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=32.3
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+.|.+|-++ | ..=-+|.+||..+.||.|.|++||--
T Consensus 6 ~~IK~LRe~Tg---agm~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 6 QLVKELRERTG---AGMMDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888887 7 78899999999999999999999976
No 107
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=82.96 E-value=4.5 Score=30.20 Aligned_cols=64 Identities=19% Similarity=0.048 Sum_probs=46.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--C--eecCCccchhhcCCCCCCEEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--G--KVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~--G--KiL~D~~tLsd~gIkegstIvv 72 (267)
+.|-..+|+.-.+.+.++.||.++-.++.++.| +.++...+... + +.+..+.....+ .+..|.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~---l~~~~~~v~~~~~~~~~~~~~~~d~~~L---~~~El~V 69 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRG---LNPECCDVFLLGLDEKKPLDLDTDSSSL---AGEELEV 69 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEecCCCcCCcCchhhhhhh---cCCEEEE
Confidence 456677899999999999999999999999999 77777766544 4 455544444333 3444443
No 108
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=82.82 E-value=0.38 Score=45.41 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeC---C--CCCHHHHHHHHHH----------HhCCCCCCCCCeE-----EEeCCeecCCccchhh
Q 024466 2 KLTVKTLKGSHFEIRVQ---P--SDTVMAVKKNIED----------VQGKDNYPCGQQL-----LIHNGKVLKDETTLAD 61 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd---~--s~TV~dLK~kI~~----------~~g~d~ip~~~Qr-----LIy~GKiL~D~~tLsd 61 (267)
.|++|.+.+..+.+.+. + +.+|.++|..++. +.+ +|.+.+| |+|+-|.+.|.++|.+
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~---vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETR---VPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhccccccccccc---CCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 35666666555544333 2 5789999999999 777 8999999 9999999999999888
Q ss_pred cCC
Q 024466 62 NKV 64 (267)
Q Consensus 62 ~gI 64 (267)
..-
T Consensus 157 ~l~ 159 (309)
T PF12754_consen 157 VLA 159 (309)
T ss_dssp ---
T ss_pred HHh
Confidence 743
No 109
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=82.69 E-value=7.2 Score=30.42 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC--Ce-ecCC-ccchhhcCCCCCCEEEEEeec
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HN--GK-VLKD-ETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~--GK-iL~D-~~tLsd~gIkegstIvv~v~k 76 (267)
..+..+...+||+.+++.+.+.+. + .++.||= |. +- .|.+ +.||.|.||.+|-.|++-.+.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~---i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN---I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT-----TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhC---C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 566788899999999999999998 7 6778883 22 22 4644 579999999999988776553
No 110
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=82.61 E-value=14 Score=31.17 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=45.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeC---C---eecCCccchhhcCCC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLLIHN---G---KVLKDETTLADNKVS 65 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~-~~QrLIy~---G---KiL~D~~tLsd~gIk 65 (267)
.|.|..++|....+.++++.||.++.+.|+.+.| +.. ..--|.+. + .-|+...+|.+...+
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~---l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLG---IRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhC---CCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 5778889999999999999999999999999999 532 22244332 1 235666777777655
No 111
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=82.30 E-value=3.3 Score=29.94 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=46.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
...+++....||.+|.+.+....+.- .......+..+|+...+ ...+.-+++||.|.++-
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~-~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPEL-ALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGG-HTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhcccc-ccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 56778889999999999999886410 12267788899999987 36666788999998874
No 112
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=81.60 E-value=11 Score=36.78 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCee-----cCCccchhhcCCCCCCEEEE
Q 024466 19 PSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKV-----LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 19 ~s~TV~dLK~kI~~~~g~d~ip~~~Q-rLIy~GKi-----L~D~~tLsd~gIkegstIvv 72 (267)
.+.|=++||+.+...-.. +..++- -=|--.|+ -.+.-+|.++.+++||+|..
T Consensus 82 ESiteG~l~~~lK~~Gd~--v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~ 139 (457)
T KOG0559|consen 82 ESITEGDLAQWLKKVGDR--VNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTP 139 (457)
T ss_pred cccccchHHHHhhCcccc--cccchhheeeeccceeeeccCCCcceeeEEecCCCCcccC
Confidence 466778888766554221 222221 11222332 12456788888999998864
No 113
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=81.27 E-value=8.4 Score=28.88 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCC---CCC-----CCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKD---NYP-----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d---~ip-----~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
...++++ ..||.+|.+.+.+..+.. .+. -....+..+|+...++.. .-+++||.|.++-
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P 83 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP 83 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC
Confidence 4677776 889999999999876410 000 123566778887765432 5688999998863
No 114
>CHL00098 tsf elongation factor Ts
Probab=80.82 E-value=2.9 Score=37.29 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.8
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++|.+|-++ | ..=-+|.+||..+.||.|.|++||-.
T Consensus 3 ~~ik~LR~~Tg---ag~~dck~AL~e~~gd~~~A~~~Lr~ 39 (200)
T CHL00098 3 ELVKELRDKTG---AGMMDCKKALQEANGDFEKALESLRQ 39 (200)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467788776 6 77889999999999999999999987
No 115
>PRK09377 tsf elongation factor Ts; Provisional
Probab=80.39 E-value=2.8 Score=39.40 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+.|.+|-++ | ..=-+|.+||..+.||.|.|++||-.
T Consensus 7 ~~IK~LR~~Tg---agm~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 7 ALVKELRERTG---AGMMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578888887 6 78899999999999999999999976
No 116
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=80.25 E-value=6.7 Score=38.72 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=57.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----Cee--cCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----GKV--LKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~----GKi--L~D~~tLsd~gIkegstIvv~v 74 (267)
|.+.+|+..| ...++++++++.+.|-.+|-.-...+ +.++...+.-+ |.+ +..++++.|+|++.|+.++|-.
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n-~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVN-YSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccC-CCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 7788998777 45799999999999999988776543 66777777532 332 3457899999999999999887
Q ss_pred e
Q 024466 75 S 75 (267)
Q Consensus 75 ~ 75 (267)
+
T Consensus 79 s 79 (571)
T COG5100 79 S 79 (571)
T ss_pred c
Confidence 3
No 117
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=80.25 E-value=12 Score=28.47 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=45.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCee-----cCCccchhh----cCCCCCCEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLLIHNGKV-----LKDETTLAD----NKVSEDGFL 70 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~-~~QrLIy~GKi-----L~D~~tLsd----~gIkegstI 70 (267)
|+|++. .+|....+.+.++.+..+|+++|.+..+ +.. ....|-|..-. |..+.-|.+ |.....++|
T Consensus 1 ~~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~---~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFK---LDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred CEEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 455555 3667888999999999999999999998 433 45666665422 233334444 334445566
Q ss_pred EEEe
Q 024466 71 VVML 74 (267)
Q Consensus 71 vv~v 74 (267)
.+.+
T Consensus 77 ~l~v 80 (82)
T cd06407 77 RLLV 80 (82)
T ss_pred EEEe
Confidence 6554
No 118
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=79.96 E-value=9 Score=28.46 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 9 ~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI-y~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
+|+...+|.......--+.++--+..|-...|++...|- -+|.+|+-++.++|||+..+-++++.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 577778888888877777777666666222567766664 5788998899999999999999988764
No 119
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=79.74 E-value=9.7 Score=27.92 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=37.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK 51 (267)
+|+++. ++..+.+.+..+.|..+|+.+|....+ ......+|-|...
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~---~~~~~~~l~Y~De 48 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFG---LDNQSFTLKYQDE 48 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhC---CCCCCeEEEEECC
Confidence 455554 667888999999999999999999998 5556788888743
No 120
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=79.72 E-value=4.1 Score=39.42 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=23.7
Q ss_pred cCCCCccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 024466 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177 (267)
Q Consensus 146 ~l~~g~~~e~~I~~l~eMG~~~f~Reqv~~AL 177 (267)
..+..--++++|+.++.|| |.||+|+.-.
T Consensus 314 ~~~~~~p~ddvidKv~~MG---f~rDqV~a~v 342 (358)
T PF07223_consen 314 QSGNRHPYDDVIDKVASMG---FRRDQVRATV 342 (358)
T ss_pred cccccCcHHHHHHHHHHcC---CcHHHHHHHH
Confidence 3445566899999999999 9999998643
No 121
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=78.75 E-value=5.7 Score=40.36 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=7.1
Q ss_pred HHHHhcCCcccccc
Q 024466 188 VDYLYSVRITSKNL 201 (267)
Q Consensus 188 vEYLl~~~~~~~~~ 201 (267)
.|-++.+-+.|-+.
T Consensus 362 ~e~Iv~~~~nEyev 375 (574)
T PF07462_consen 362 PENIVPEGINEYEV 375 (574)
T ss_pred hhhhhcCcCCccce
Confidence 45555555555443
No 122
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=78.71 E-value=4.2 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred EEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 45 LLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 45 rLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.|-|+||.|.++++|+|| |..++.-.++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 577999999999999999 443443334443
No 123
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=78.64 E-value=11 Score=26.75 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=42.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+ ++..+.||.+|-+. .+ ++.+..-+.++|+++.-+ ...+.-+++||.|-++-
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~~----l~---~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLAR----EG---LAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHh----cC---CCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 55554 46654 55678898887764 46 677788888999988633 23445588999998764
No 124
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=78.22 E-value=5.9 Score=38.58 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=51.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-ccchhhcCCCCC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSED 67 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D-~~tLsd~gIkeg 67 (267)
.|-||.-+|+.....+..+.||.|++..|...... .+...+-|+ |--|.|.| +.||++.|+.+.
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~--~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPG--DSSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCC--CcCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 47789889999889999999999999999998873 233345554 56788865 679999999864
No 125
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=77.38 E-value=13 Score=26.72 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=42.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+.+ +.+.||.+|-+. .+ ++....-+.++|.++..+.- +.+ +++||.|-++-
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~----l~---~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDS----LG---FPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVT 60 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHH----cC---CCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEe
Confidence 55554 4665544 567788877654 46 77888999999998864332 345 89999998764
No 126
>smart00455 RBD Raf-like Ras-binding domain.
Probab=77.25 E-value=8.5 Score=28.41 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=40.6
Q ss_pred EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecC
Q 024466 4 TVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG--KVLK 54 (267)
Q Consensus 4 tVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G--KiL~ 54 (267)
.|-..+|+...+.+.|+.||.|+-.++.++.| +.++...+...| |.|+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~---l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRG---LNPECCVVRLRGEKKPLD 52 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccee
Confidence 45567899999999999999999999999999 888888887755 4554
No 127
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=76.40 E-value=7.2 Score=30.37 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=42.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
+...+|=...+..||..++...+ +.-+.-.+...+..|+++++|-|-||+-...+.+.+--
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~---~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLG---ISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH----S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhC---CCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 34556667899999999999999 66677777778877999999999999988898887753
No 128
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=76.16 E-value=12 Score=26.62 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+. ++++...||.+|.+++ + ++.+...+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 iNg~~--~~~~~~~tv~~ll~~l----~---~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEP--REVEEGATLAELLEEL----G---LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeE--EEcCCCCCHHHHHHHc----C---CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE
Confidence 34655 4556788999998774 4 556788888999988543 33445689999998764
No 129
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=76.13 E-value=6.6 Score=32.13 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++.|+-+++- | -+|+++++||+.+.||.-.|+-||..
T Consensus 77 ~edI~lv~~q~g---vs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 77 EEDIELVAEQTG---VSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred HHHHHHHHHHHC---cCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 6678888886 6 89999999999999999999999865
No 130
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.02 E-value=3.7 Score=38.38 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=29.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHh-cCChHHHHHHH-hc
Q 024466 158 QQIMDMGGGTWDKETVTRALQAA-YNNPERAVDYL-YS 193 (267)
Q Consensus 158 ~~l~eMG~~~f~Reqv~~ALrAA-fnNpdRAvEYL-l~ 193 (267)
+.+|+|| |++..+.+||-.. .-+.+-|++|| +.
T Consensus 5 ~~l~~mg---fps~k~e~al~~~~n~~~e~al~wl~~d 39 (290)
T KOG2689|consen 5 QSLEEMG---FPSGKAEKALAVYGNRGIEQALDWLEMD 39 (290)
T ss_pred HHHHHhc---CchhhhhhHhhhhccccHHHHHHHHHhc
Confidence 8899999 9999999999876 56789999999 44
No 131
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=74.02 E-value=21 Score=25.53 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=41.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|. |+.+ ++..+.||.+|.+. .+ +......+-.+|+++.. ...++.-+++||.|.++-
T Consensus 1 m~i~vN---g~~~--~~~~~~tl~~ll~~----l~---~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILFN---DQPM--QCAAGQTVHELLEQ----LN---QLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEEC---CeEE--EcCCCCCHHHHHHH----cC---CCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEE
Confidence 556554 6654 44677899988865 34 44456777899999852 334555689999998764
No 132
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=73.59 E-value=24 Score=24.79 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=39.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+. +++..+.||.+|.+.+ + +. ....+..+|+++..+. ..+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~---~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAY----G---AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQ 60 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhh----C---CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEe
Confidence 55554 4654 4556778999888764 3 32 3456778999875322 3344488999998864
No 133
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=73.15 E-value=14 Score=35.02 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccccc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNLLL 203 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~~~ 203 (267)
..++.++-|.+-| .+.+++..+++.+.++|.+|.+|+-.+....|..++
T Consensus 173 ~~~~~~~~L~~~~---~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~~ 221 (319)
T PRK08769 173 PAHEALAWLLAQG---VSERAAQEALDAARGHPGLAAQWLREDGLALRRAVA 221 (319)
T ss_pred CHHHHHHHHHHcC---CChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHH
Confidence 4477888888889 999999999999999999999999887666655544
No 134
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.97 E-value=5.4 Score=35.48 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCCh
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNP 184 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNp 184 (267)
..++++..|+++| |.+.++.+|++...++-
T Consensus 143 ~~~ea~~AL~~LG---y~~~ea~~al~~v~~~~ 172 (196)
T PRK13901 143 KFKELEQSIVNMG---FDRKLVNSAIKEIMLLD 172 (196)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhcch
Confidence 4688999999999 99999999999776643
No 135
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=71.90 E-value=11 Score=31.19 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=42.3
Q ss_pred EeCC-CCCHHHHHHHHHHHhCCC-------CCCCCCeEEEeCC-----------------eec---CCccchhhcCCCCC
Q 024466 16 RVQP-SDTVMAVKKNIEDVQGKD-------NYPCGQQLLIHNG-----------------KVL---KDETTLADNKVSED 67 (267)
Q Consensus 16 eVd~-s~TV~dLK~kI~~~~g~d-------~ip~~~QrLIy~G-----------------KiL---~D~~tLsd~gIkeg 67 (267)
.|+. +.||++|++.+.+..... ++.-+..||++.. .+| +++++|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 899999999988765411 1223456776541 467 67889999999998
Q ss_pred CEEEEEee
Q 024466 68 GFLVVMLS 75 (267)
Q Consensus 68 stIvv~v~ 75 (267)
..|-+...
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 88877654
No 136
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=71.65 E-value=9.2 Score=29.39 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHH-HhCCCCCCC-C---CeEEEeCCee----cCCccchhhcCCCCCCEEEEE
Q 024466 19 PSDTVMAVKKNIED-VQGKDNYPC-G---QQLLIHNGKV----LKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 19 ~s~TV~dLK~kI~~-~~g~d~ip~-~---~QrLIy~GKi----L~D~~tLsd~gIkegstIvv~ 73 (267)
...|+++|-++|.+ +.| +.. + .-+++|.... -..+++|+++||++|++|.|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg---~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLG---MNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp TT-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hhCcHHHHHHHHHHhccC---CCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 35799999998765 444 211 1 3344454332 122578999999999998764
No 137
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=71.55 E-value=31 Score=26.80 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=46.6
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCccch----hhcCCCCCCEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI------HNGKVLKDETTL----ADNKVSEDGFLV 71 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI------y~GKiL~D~~tL----sd~gIkegstIv 71 (267)
|.|-..+|....|.|+..+|+.++=+.+..+.++. +...--|+ +=.+.++|...| +..++..++.++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~--~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQ--DDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCC--CCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 45666789999999999999999999999999842 33333443 124577887554 444665555554
No 138
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=71.04 E-value=31 Score=25.46 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|.+++. .+|+. ++++...|+.+|-+. .+ ++.+..-..++|.++..+ -.++.-+++||.|.++-
T Consensus 1 ~~m~i~-~ng~~--~e~~~~~tv~dLL~~----l~---~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 1 MPMTIQ-LNGKE--VEIAEGTTVADLLAQ----LG---LNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVR 63 (68)
T ss_pred CcEEEE-ECCEE--EEcCCCCcHHHHHHH----hC---CCCceEEEEECCEEccch-hhhhccccCCCEEEEEE
Confidence 445555 34654 556666899988765 56 677788888999998643 34556688889887753
No 139
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.55 E-value=11 Score=38.49 Aligned_cols=65 Identities=29% Similarity=0.432 Sum_probs=42.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEE--eC--Ce-ecCCc-------------cchhhcCCCC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLI--HN--GK-VLKDE-------------TTLADNKVSE 66 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLI--y~--GK-iL~D~-------------~tLsd~gIke 66 (267)
..+.+.|-..|||.++|+||-+..-++ .| +++.-|- .+ |+ +|.|. .||+.|+|.+
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~-~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKN-TPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTT-S-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcC-CCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 457788888999999999999776433 32 3344443 22 23 56654 5899999999
Q ss_pred CCEEEEEeec
Q 024466 67 DGFLVVMLSK 76 (267)
Q Consensus 67 gstIvv~v~k 76 (267)
|++|.++.+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9998877654
No 140
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=70.39 E-value=9.9 Score=31.16 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
++.|+-+++- | -+|+.+++||+++.||.-.|+-||.
T Consensus 79 ~eDI~lV~eq~g---vs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 79 EDDIELVMKQCN---VSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred HHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 6678888886 6 8999999999999999999999885
No 141
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=69.69 E-value=32 Score=34.20 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=54.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCeEEE-eCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDN---YPCGQQLLI-HNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~---ip~~~QrLI-y~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
+|+|...+ +...+-+..+..|.+|-..|-+..+.+. .....-.|. -+|..|+.+++|.+.||.||+.+++.-
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 57777554 4567778888899999999999887321 122334553 467899999999999999999999864
No 142
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=69.54 E-value=21 Score=27.69 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=35.2
Q ss_pred EEEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 024466 2 KLTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (267)
Q Consensus 2 kItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK 51 (267)
+|+||.. .|....+.|+++.+..+|..+|.++++ +. ...+|-|...
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~---~~-~~~~iKykDE 48 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG---FK-RRLKIKMKDD 48 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC---CC-CceEEEEEcC
Confidence 3555544 677889999999999999999999999 53 4556656544
No 143
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=68.84 E-value=6.5 Score=31.40 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=28.0
Q ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
...|+..+..+|.+-| ++++...+||+++|+
T Consensus 67 ~~~Ef~~~~~eM~dAG---V~~~~~~~~l~~~Yk 97 (100)
T PF15652_consen 67 LQEEFNNSYREMFDAG---VSKECRKKALKAQYK 97 (100)
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 3478899999999999 999999999999885
No 144
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=67.76 E-value=31 Score=24.97 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=41.1
Q ss_pred CEEEEEeCCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPS-DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s-~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+. ++.+ .||.+|-+. .+ +++...-+-++|+++.- ....+.-+++||.|.++-
T Consensus 1 m~I~v---NG~~~~--~~~~~~tv~~lL~~----l~---~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIE--VPESVKTVAELLTH----LE---LDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEE--cCCCcccHHHHHHH----cC---CCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 55554 466554 4454 578777653 45 66677777899999853 345566689999998764
No 145
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=67.21 E-value=24 Score=24.99 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+.+ ++..+.||.+|.+.+ + ++++...+..+|+++.. ....++-+++||.|.++-
T Consensus 3 iNg~~~--~~~~~~tv~~ll~~l----~---~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 3 VNGEPV--EVEDGLTLAALLESL----G---LDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVT 59 (64)
T ss_pred ECCeEE--EcCCCCcHHHHHHHc----C---CCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEE
Confidence 456654 445678999988763 4 56677777899998843 223456689999998764
No 146
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=66.88 E-value=1.6 Score=30.07 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=14.6
Q ss_pred HHHHHH-HhCCCCCCHHHHHHHHHHhcC
Q 024466 156 TIQQIM-DMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 156 ~I~~l~-eMG~~~f~Reqv~~ALrAAfn 182 (267)
.|..|- .|| |+|+++..||+..-.
T Consensus 5 vv~~Ls~tMG---Y~kdeI~eaL~~~~~ 29 (46)
T PF08587_consen 5 VVSKLSKTMG---YDKDEIYEALESSEP 29 (46)
T ss_dssp CHHHHHCTT------HHHHHHHCCSSS-
T ss_pred HHHHHHHHhC---CCHHHHHHHHHcCCC
Confidence 344444 499 999999999998433
No 147
>PRK07440 hypothetical protein; Provisional
Probab=66.18 E-value=34 Score=25.05 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+. +++....||.+|-+. .+ ++....-+-++|+++.- ....+.-+++||.|.++-
T Consensus 9 vNG~~--~~~~~~~tl~~lL~~----l~---~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQQ----LG---FNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHHH----cC---CCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence 45765 455678898887753 45 66777788899999852 345566689999998764
No 148
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=66.05 E-value=5.4 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
|||+-+..||+.+-+|..+|++.|=-
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lgi 30 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLGI 30 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCC
Confidence 78999999999999999999998843
No 149
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=65.76 E-value=25 Score=25.46 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=33.8
Q ss_pred EEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 024466 2 KLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd-~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G 50 (267)
+|+++. +|..+.+.+. .+.|..+|+.+|.+..+ .+....+|-|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFG---LDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhC---CCCCcEEEEeeC
Confidence 455553 3567778888 89999999999999998 444566776654
No 150
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=65.47 E-value=6.6 Score=34.53 Aligned_cols=28 Identities=14% Similarity=0.430 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
..++.+..|+.+| |++.++.+|++....
T Consensus 146 ~~~e~~~aL~~LG---y~~~e~~~ai~~~~~ 173 (191)
T TIGR00084 146 ARDELFEALVSLG---YKPQEIQQALKKIKN 173 (191)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 3588999999999 999999999999865
No 151
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=65.36 E-value=25 Score=25.69 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.4
Q ss_pred EEEEeCCCcEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 024466 3 LTVKTLKGSHFE-IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (267)
Q Consensus 3 ItVKtl~gk~~~-IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G 50 (267)
|+++. +|.... +.+..+.+..+|+.+|++..+ .+....+|-|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~---~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFG---LLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHT---TSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhC---CCCccEEEEeeC
Confidence 44442 455555 899999999999999999999 566788998864
No 152
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=65.05 E-value=56 Score=27.49 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=26.1
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChH
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPE 185 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpd 185 (267)
.+.|.. =-.|+.|| -+++.|+.-|++..-||+
T Consensus 113 dP~y~k-YfKMl~~G---vP~~aVk~KM~~eGlDp~ 144 (148)
T PF10152_consen 113 DPRYAK-YFKMLKMG---VPREAVKQKMQAEGLDPS 144 (148)
T ss_pred CccHHH-HHHHHHcC---CCHHHHHHHHHHcCCCHH
Confidence 456644 45677999 999999999999988886
No 153
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=64.97 E-value=38 Score=25.95 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+.+ +++.+.||.+|-+. .+ ++....-+-.+|.++. ....+++-+++||.|.++-
T Consensus 23 VNG~~~--~~~~~~tl~~LL~~----l~---~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 23 INDQSI--QVDISSSLAQIIAQ----LS---LPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ECCeEE--EcCCCCcHHHHHHH----cC---CCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 456554 45677888877765 35 6677777789999994 4556777899999998764
No 154
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=64.95 E-value=8.4 Score=31.12 Aligned_cols=58 Identities=10% Similarity=0.221 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHH---HHHhcCCcccccccchhHHH
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAV---DYLYSVRITSKNLLLFPFVV 208 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAv---EYLl~~~~~~~~~~~~~~~~ 208 (267)
.-.....++|...|-|.+.++++.+-++..+.-.+.-+ .||+-...++.|..+|+.+.
T Consensus 36 ~~r~~~~~~l~~~G~gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la 96 (126)
T cd03211 36 QKQREARRKLKAIGWDDKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLF 96 (126)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHH
Confidence 34566778888889888999998887776665443333 46654446667778877754
No 155
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=64.30 E-value=43 Score=27.05 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=41.1
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCccchhhc--CCC-CCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADN--KVS-EDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GKiL~D~~tLsd~--gIk-egstIvv~v~k 76 (267)
-|..+.||.++...|....+ +.+++--.+| ++.....+.+++++ .-+ ++.+|++..+.
T Consensus 46 lVp~~~tv~~f~~~irk~l~---l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys~ 107 (112)
T cd01611 46 LVPSDLTVGQFVYIIRKRIQ---LRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSS 107 (112)
T ss_pred EecCCCCHHHHHHHHHHHhC---CCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEec
Confidence 47899999999999999987 5555544444 55455667777765 233 47799887754
No 156
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=63.73 E-value=42 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=40.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCccchhhc
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADN 62 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL~D~~tLsd~ 62 (267)
+.|--.+|+...+.+.++.||.++-.++.++.| +.++...+.. ..+.|..+...+.+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~---L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRG---LNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-----CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcC---CCHHHEEEEEcCCCccccCCCceeee
Confidence 445667888889999999999999999999999 6666665543 44566666655554
No 157
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=63.57 E-value=13 Score=28.02 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcCC-hHHHHHHHhc
Q 024466 155 QTIQQIMDMGGGTWDKETVTRALQAAYNN-PERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eMG~~~f~Reqv~~ALrAAfnN-pdRAvEYLl~ 193 (267)
.-+-.||=+|+|.|+-++-..|.+.|-.+ -.++++||+.
T Consensus 19 aeLvALmwiGRGd~~~eew~~a~~~A~~~~~~~ta~YLl~ 58 (75)
T PF12616_consen 19 AELVALMWIGRGDFEAEEWEEAVAEARERASARTADYLLG 58 (75)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHHc
Confidence 34556788999999999999999888655 5678889886
No 158
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=61.46 E-value=9.2 Score=33.98 Aligned_cols=28 Identities=11% Similarity=0.368 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAY 181 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAf 181 (267)
+..++++..|+.+| |.+.++.+|++...
T Consensus 153 ~~~~ea~~AL~~LG---y~~~ea~~av~~~~ 180 (203)
T PRK14602 153 SVFRDALAGLANLG---YGEEEARPVLKEVL 180 (203)
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHHh
Confidence 34688999999999 99999999999885
No 159
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=60.69 E-value=15 Score=34.70 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
++|.+|-++-| =.=-+|.+||..+.+|-|.|+|||--
T Consensus 7 ~~VKeLRe~Tg--AGMmdCKkAL~E~~Gd~EkAie~LR~ 43 (296)
T COG0264 7 ALVKELREKTG--AGMMDCKKALEEANGDIEKAIEWLRE 43 (296)
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56888888733 34578999999999999999999976
No 160
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=60.58 E-value=25 Score=28.97 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=43.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhc---CCCCCCEEEEEeec
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN---KVSEDGFLVVMLSK 76 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~---gIkegstIvv~v~k 76 (267)
+=|..+.||+++...|....+ +.+++.-|..++.++..+.+++++ .-.++.+|++..+.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~---l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALG---TSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVRT 106 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcC---CChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEcc
Confidence 357889999999999999988 777775444556566677788776 23457788887654
No 161
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=60.38 E-value=6.9 Score=36.97 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=52.2
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHH--HHHhcCChHHHHHHHhcCCcccccccchhHHHHHHHHHhhcceeeeehHHH
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRA--LQAAYNNPERAVDYLYSVRITSKNLLLFPFVVLAIIILLTSRFRRYNVLTF 227 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~A--LrAAfnNpdRAvEYLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (267)
.+++|..+.-|.+|| |.-+++-+| +.|-+-.|.|=+--+.+.++. .+-|- -...-.+-|+|||||..
T Consensus 75 ~~~~et~~kiL~dmg---Fkv~~~p~a~~~~agi~~P~~~lA~tv~~en~------~eiVk--G~L~TCaLl~KY~VdKM 143 (357)
T PF03216_consen 75 QDDTETKCKILTDMG---FKVTQVPRATPIEAGIMMPMRKLAETVNNENV------MEIVK--GLLMTCALLTKYSVDKM 143 (357)
T ss_pred hhhhhhHHHHHHHhC---ceeEecccCCCcccchhchHHHHHHHhChhhH------HHHHH--HHHHHHHHHHHhcHHHH
Confidence 357899999999999 988888776 456677888887777665531 11111 11223456899999999
Q ss_pred HHHHh
Q 024466 228 REFQK 232 (267)
Q Consensus 228 ~~~~~ 232 (267)
+.||+
T Consensus 144 ~kY~~ 148 (357)
T PF03216_consen 144 IKYIQ 148 (357)
T ss_pred HHHHH
Confidence 99998
No 162
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=12 Score=36.13 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=42.5
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeec-----CCccchhhcCCCCCCEEEEE
Q 024466 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NGKVL-----KDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 17 Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy---~GKiL-----~D~~tLsd~gIkegstIvv~ 73 (267)
++-.-||.|+|+++..+.| +...++||.| .||.- .-+..|-.|+|.+||.+.|-
T Consensus 354 I~~~~TV~D~~~~Ld~~VG---vk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 354 ICMTRTVLDFMKILDPKVG---VKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEeehHHHHHHHHhccccc---cccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3345699999999999999 8899999987 35432 23567888999999988753
No 163
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=57.30 E-value=37 Score=35.80 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCcc--chhhcCCCCCCEEEEEeec
Q 024466 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDET--TLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 3 ItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~--tLsd~gIkegstIvv~v~k 76 (267)
|+|=+. ++....+-++++.|+..+++.|....| +|.+.|-|+|.|....+.+ +..--| -.+-|+++...
T Consensus 316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tg---ipe~~qeLL~e~~~~h~~~~~Q~~~dg--~~~~l~l~~~~ 387 (732)
T KOG4250|consen 316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTG---IPEGKQELLFEGGLSHLEDSAQCIPDG--LDSPLYLVSDQ 387 (732)
T ss_pred eEEEeeccceEEEEecChhhhHHHHHHHHHHhhC---CCCccceeeeecCccccCcccccCCCC--CCCceEEEecC
Confidence 344333 456678889999999999999999999 9999999999987543332 211122 23456665544
No 164
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.27 E-value=14 Score=32.51 Aligned_cols=28 Identities=11% Similarity=0.449 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
..++++..|+.+| |.+.++.+|++....
T Consensus 142 ~~~e~~~AL~~LG---y~~~ea~~av~~~~~ 169 (188)
T PRK14606 142 IYHESLEALVSLG---YPEKQAREAVKHVYR 169 (188)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 3688999999999 999999999998854
No 165
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=57.26 E-value=21 Score=35.54 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=60.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCC---ccchhhcCCCCCCEEEEEeec
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL--IHNGKVLKD---ETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL--Iy~GKiL~D---~~tLsd~gIkegstIvv~v~k 76 (267)
+|.||-.+|..|+-++..++-+..+|..|....+ +.....-| .|--|+..| +++|.++.+-+...|+|+-++
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~---i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQT---IGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhccc---ccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 5889999999999888888888999999998777 55565555 588888854 479999999998888877665
Q ss_pred CCC
Q 024466 77 SKT 79 (267)
Q Consensus 77 ~k~ 79 (267)
+..
T Consensus 393 r~t 395 (506)
T KOG2507|consen 393 RAT 395 (506)
T ss_pred Ccc
Confidence 543
No 166
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=56.85 E-value=45 Score=25.48 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G 50 (267)
++.+.+.+..+..+|..+|+++.. .+++..+|-|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~---l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALP---QQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhc---CChhhcEEEecC
Confidence 566788999999999999999999 899999999863
No 167
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=56.72 E-value=49 Score=25.16 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=40.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCccchhhcCCCCCCEEEEEe
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
+..+..+++...||+++-+. .| +|..+..+|. +|+...- +|-+++|+.|.|.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LG---VP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LG---VPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cC---CChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 34577888999999887654 78 8988887764 8887654 36788999998763
No 168
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=56.57 E-value=41 Score=25.64 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=42.7
Q ss_pred EEEeCCC-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 4 TVKTLKG-SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 4 tVKtl~g-k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.|++.+. .++-|-. .+..+|+.+..+..+ ++.+..+|+. .|-+++|+.-+..+ +++++.|++.+
T Consensus 6 kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~---~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~~ 72 (78)
T PF02017_consen 6 KVRNHDRSVKKGVAA---SSLEELLEKACDKLQ---LPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLEK 72 (78)
T ss_dssp EEEETTSSCEEEEEE---SSHHHHHHHHHHHHT----SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEES
T ss_pred EEecCCCCceEeEEc---CCHHHHHHHHHHHhC---CCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEECC
Confidence 4555542 3444543 489999999999999 7777777765 78888877655544 34566665543
No 169
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=55.72 E-value=14 Score=32.38 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAY 181 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAf 181 (267)
..++++..|+.+| |+|.++.+|++...
T Consensus 144 ~~~e~~~aL~~LG---y~~~ea~~al~~v~ 170 (186)
T PRK14600 144 INDDALAALISLG---YEKTKAFNAIQKIK 170 (186)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHhh
Confidence 3578999999999 99999999999884
No 170
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=55.37 E-value=10 Score=29.09 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=37.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--------C------CccchhhcCCCCCCEEEEE
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL--------K------DETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL--------~------D~~tLsd~gIkegstIvv~ 73 (267)
|++++++|+.+|-+.+++... +....-.|-.+|+-| + =+++|.++ +.+|+.|+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~---~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPE---FQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTT---T--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChh---hhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 688999999999999998743 333333444444432 1 24789999 9999998873
No 171
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=55.09 E-value=12 Score=33.30 Aligned_cols=29 Identities=14% Similarity=0.548 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNN 183 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnN 183 (267)
..+++|..|++|| |.+.|+.+|+..+.-+
T Consensus 155 ~~~~~v~AL~~LG---y~~~e~~~av~~v~~~ 183 (201)
T COG0632 155 ALEEAVEALVALG---YKEKEIKKAVKKVLKE 183 (201)
T ss_pred hhhHHHHHHHHcC---CCHHHHHHHHHHHHhc
Confidence 3455699999999 9999999999988765
No 172
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.15 E-value=36 Score=32.00 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=51.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCC---ccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL--IHNGKVLKD---ETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL--Iy~GKiL~D---~~tLsd~gIkegstIvv 72 (267)
.|-||-.+|+++..++.+..|..+|+..|....+.+ .+--.| -|--+.+.+ .++|..+++-+-.+|.+
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~---~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDG---LDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCC---CCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 578998899999999999999999999999998832 222222 244455532 47899999988777654
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=53.57 E-value=28 Score=33.05 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccc
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSVRITS 198 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~ 198 (267)
|...+-|.+- | .+.+++..+++.|.++|.+|.+|+-.+....
T Consensus 170 ~~~~~~L~~~~~---~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~ 212 (334)
T PRK07993 170 QYALTWLSREVT---MSQDALLAALRLSAGAPGAALALLQPERWQQ 212 (334)
T ss_pred HHHHHHHHHccC---CCHHHHHHHHHHcCCCHHHHHHHhcCchHHH
Confidence 5555566664 7 8999999999999999999999987755433
No 174
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=53.56 E-value=14 Score=32.71 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
.++++..|+.+| |.+.++.+|++....
T Consensus 149 ~~e~~~aL~~LG---y~~~ea~~ai~~i~~ 175 (195)
T PRK14604 149 DRELSEILISLG---YSAAEAAAAIAALPS 175 (195)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHhh
Confidence 578999999999 999999999998754
No 175
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=53.20 E-value=47 Score=31.89 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+| +|+. +++..+.||.+|-+. .+ ++.+..-+.++|+++. .....++-+++||.|.++---
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~---i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~V 63 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LG---LAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFV 63 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cC---CCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEe
Confidence 55554 4665 455677888887764 46 7788888999999994 334566779999999887543
No 176
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=52.78 E-value=17 Score=31.87 Aligned_cols=26 Identities=15% Similarity=0.546 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
..++++..|+++| |.+.++.+|++..
T Consensus 141 ~~~ea~~AL~~LG---y~~~ea~~a~~~~ 166 (183)
T PRK14601 141 DKSEALAALLTLG---FKQEKIIKVLASC 166 (183)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHhc
Confidence 3588999999999 9999999999876
No 177
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.46 E-value=74 Score=29.17 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.7
Q ss_pred hcCCCCCCEEEEEee
Q 024466 61 DNKVSEDGFLVVMLS 75 (267)
Q Consensus 61 d~gIkegstIvv~v~ 75 (267)
|+|.|+|.||.+-++
T Consensus 149 DlgFKEGeTIkinik 163 (253)
T KOG2500|consen 149 DLGFKEGETIKINIK 163 (253)
T ss_pred cccccCCcEEEEEee
Confidence 599999999999887
No 178
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=50.79 E-value=48 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CeEE--EeCCee---cCCccchhhc
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG---QQLL--IHNGKV---LKDETTLADN 62 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~---~QrL--Iy~GKi---L~D~~tLsd~ 62 (267)
.+.+-|..+.||.||.+++..+.+ ++.+ .+|| +++||+ +..+..|.++
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~---~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVG---FSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT-------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcC---CCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 467889999999999999999988 4433 4555 578875 6778888887
No 179
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=50.69 E-value=99 Score=22.87 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=32.4
Q ss_pred EEeCC-CCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 15 IRVQP-SDTVMAVKKNIEDVQGK--DNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 15 IeVd~-s~TV~dLK~kI~~~~g~--d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
++++. ..||.+|++.+.+.... ........++..+++...+ +.-|++||.|.++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEe
Confidence 44443 47999999999987531 0011223344445554332 3358899999876
No 180
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=50.11 E-value=40 Score=34.53 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCccHHHHHH-HHHHhCCCCCCHHHHHHHH--------------HHhcCChH-------------HHHHHHhc-----C-
Q 024466 149 AGNDLEQTIQ-QIMDMGGGTWDKETVTRAL--------------QAAYNNPE-------------RAVDYLYS-----V- 194 (267)
Q Consensus 149 ~g~~~e~~I~-~l~eMG~~~f~Reqv~~AL--------------rAAfnNpd-------------RAvEYLl~-----~- 194 (267)
.+-.+++... -|-+.| |..|...++. ||-|-+|| +||.||-+ +
T Consensus 170 ~~~~l~ei~~~~L~glG---Ft~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~ 246 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLG---FTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKI 246 (582)
T ss_pred ccchHHHHHHHHHHhCC---CCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCc
Confidence 3436677777 677899 9988766542 67788887 67766655 3
Q ss_pred --CcccccccchhHHHHHHHHHhhcceeee--ehHHHHHHHhhhhccccceeeeehHHHHHHHHHHHhhccCC
Q 024466 195 --RITSKNLLLFPFVVLAIIILLTSRFRRY--NVLTFREFQKQLKLLSQWLIFLQVRQLKLVQQELHQSLEYP 263 (267)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (267)
-+.|-|--..+.|.-.||=+-.-+.+.| ||+.|..=|..-+---+--.-.|-.|.+-+ |..+.+..||
T Consensus 247 T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~-q~fid~FrYn 318 (582)
T KOG0062|consen 247 TSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHL-QVFIDKFRYN 318 (582)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHH-HHHHHHhccC
Confidence 2556777778888877777755555544 999998877633322222333444444444 4556667776
No 181
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=49.95 E-value=19 Score=34.79 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=52.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCC--ccchhhcCCCCCCE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KVLKD--ETTLADNKVSEDGF 69 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G---KiL~D--~~tLsd~gIkegst 69 (267)
.|.||..+|+.+...+-.+++|..|-..+...... .+-+..+|+.+= |.|.+ +.||.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg--~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDG--SDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcc--cccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 48899999988777778899999998887776653 566788998776 66643 67999999998654
No 182
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=49.38 E-value=43 Score=29.59 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAY 181 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAf 181 (267)
..++++..|+++| |.+.++.+|++...
T Consensus 151 ~~~ea~~AL~~LG---y~~~ea~~al~~i~ 177 (197)
T PRK14603 151 AAEDAVLALLALG---FREAQVRSVVAELL 177 (197)
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 4688999999999 99999999999874
No 183
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=46.99 E-value=62 Score=22.67 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHH--hCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMD--MGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~e--MG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
|+.|.+... -| -+|+-++|-|+-..-|++.||.-|++
T Consensus 10 edlI~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQG---KSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTT---S-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 666776655 48 99999999999999999999999987
No 184
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=46.92 E-value=23 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.2
Q ss_pred eecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 51 KVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 51 KiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|..+|+++|..++++-||+|.|.+..++..
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p~~~ 141 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPPNRR 141 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCcccC
Confidence 345788999999999999999999776644
No 185
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=45.56 E-value=75 Score=29.76 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=16.5
Q ss_pred cCCccchhhcCCCCCCEEEEEeecCCCCC
Q 024466 53 LKDETTLADNKVSEDGFLVVMLSKSKTLG 81 (267)
Q Consensus 53 L~D~~tLsd~gIkegstIvv~v~k~k~~~ 81 (267)
|-|++.+-++.+|.-+. .+++||+..-+
T Consensus 115 lv~~~di~e~~lk~~~~-e~~irkkeal~ 142 (274)
T PLN02983 115 LVDSRDIVELQLKQLDC-ELVIRKKEALP 142 (274)
T ss_pred hhccccceeeeccccce-EEEEecccccC
Confidence 45667777777775443 34566655443
No 186
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=44.65 E-value=35 Score=22.75 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
-.|+..+..|+...+|.-+|+|.++
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHhC
Confidence 4799999999999999999999874
No 187
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=43.34 E-value=78 Score=23.93 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCccchhhcCCCCCCEEEEEee
Q 024466 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 21 ~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.+..+|+.+..+..+ ++....+|.. .|-+++|+.-+..+ +.+++.+++.
T Consensus 19 ~sL~eL~~K~~~~l~---l~~~~~~l~L~eDGT~VddEeyF~tL---p~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLA---LPDSPVTLVLEEDGTIVDDEEYFQTL---PDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhC---CCCCCcEEEEecCCcEEccHHHHhcC---CCCcEEEEEc
Confidence 479999999999999 7766666643 78899887665554 3455555543
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=42.86 E-value=36 Score=32.35 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNL 201 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~ 201 (267)
..+..++-|.+.| .+ ....|++.+.++|.+|.+++-++....+..
T Consensus 168 ~~~~~~~~L~~~~---~~--~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~ 212 (319)
T PRK06090 168 STAQAMQWLKGQG---IT--VPAYALKLNMGSPLKTLAMMKEGGLEKYHK 212 (319)
T ss_pred CHHHHHHHHHHcC---Cc--hHHHHHHHcCCCHHHHHHHhCCCcHHHHHH
Confidence 4577888888898 77 346899999999999999988777655443
No 189
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=42.69 E-value=95 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCC--CCCHHHHHHHHHHHhC
Q 024466 8 LKGSHFEIRVQP--SDTVMAVKKNIEDVQG 35 (267)
Q Consensus 8 l~gk~~~IeVd~--s~TV~dLK~kI~~~~g 35 (267)
.+|.+..+.+++ +.+..+|++.|...++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 467788888888 7799999999999998
No 190
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=42.22 E-value=75 Score=25.32 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCccchhhc---CCCCCCEEEEEeec
Q 024466 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN---KVSEDGFLVVMLSK 76 (267)
Q Consensus 9 ~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~-QrLIy~GKiL~D~~tLsd~---gIkegstIvv~v~k 76 (267)
+.++|- |..+.||.++...|..... +.+++ .-|..++..+..+.+++++ .-.++.+|++..+.
T Consensus 33 dk~KfL--vp~~~tv~qf~~~ir~rl~---l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 33 DKKKFL--VPKDLTVGQFVYIIRKRLQ---LSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp SSSEEE--EETTSBHHHHHHHHHHHTT-----TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEEES
T ss_pred CccEEE--EcCCCchhhHHHHhhhhhc---CCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEecc
Confidence 344444 5678899999999999987 55543 4556677666788888776 22467899887653
No 191
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=41.67 E-value=1.5e+02 Score=23.39 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=45.1
Q ss_pred EEEEeCC-CcEEEEEeCCCCCHHHHHHHHHHHh--CCCC-CCCC-CeEEEeCCe--ecCCccchhhc-----CCCCCCEE
Q 024466 3 LTVKTLK-GSHFEIRVQPSDTVMAVKKNIEDVQ--GKDN-YPCG-QQLLIHNGK--VLKDETTLADN-----KVSEDGFL 70 (267)
Q Consensus 3 ItVKtl~-gk~~~IeVd~s~TV~dLK~kI~~~~--g~d~-ip~~-~QrLIy~GK--iL~D~~tLsd~-----gIkegstI 70 (267)
|.|...+ ...+++.+++++|+.+|.+.+-.+. ..+. -+.+ +-.|=-.|+ -|..+..|.+| .++.|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 4444333 3568999999999999999888762 1110 1222 444545565 24455555555 36777888
Q ss_pred EEEeec
Q 024466 71 VVMLSK 76 (267)
Q Consensus 71 vv~v~k 76 (267)
++++..
T Consensus 100 ~L~L~~ 105 (108)
T smart00144 100 HLVLMT 105 (108)
T ss_pred eEEEEe
Confidence 877654
No 192
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=41.66 E-value=1.6e+02 Score=22.59 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=41.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-c-CCccchhhc--CCCCCCEEEEEeec
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV-L-KDETTLADN--KVSEDGFLVVMLSK 76 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKi-L-~D~~tLsd~--gIkegstIvv~v~k 76 (267)
+-|+.+.||.++...|....+ +.+++--.+|-+.. + ..+.+++++ .-+++++|++..+.
T Consensus 20 flv~~~~tv~~~~~~lrk~L~---l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 20 FKISATQSFQAVIDFLRKRLK---LKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSYCK 82 (87)
T ss_pred EEeCCCCCHHHHHHHHHHHhC---CCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEEeC
Confidence 457899999999999999988 55555444555554 3 445666554 22678999987754
No 193
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=41.53 E-value=22 Score=30.07 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=28.4
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccc--cchhHHHHHHHHHhhccee
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNL--LLFPFVVLAIIILLTSRFR 220 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 220 (267)
-.+.-.-|.+++..| .+++|+...|..-|++ +-|+.|....... -+.|++.++..+.+..++.
T Consensus 59 A~dmR~~I~~~l~~G---~s~~eI~~~~v~rYG~-----~Vl~~Pp~~~~~~~lW~~P~~~l~~g~~~~~~~~ 123 (148)
T PF03918_consen 59 ARDMRREIREMLAEG---KSDEEIIDYFVERYGE-----FVLYEPPFKGFTWLLWLGPFLLLLLGGALLFRRL 123 (148)
T ss_dssp HHHHHHHHHHHHHHT-----HHHHHHHHHHHHTT-----T-EES--S--------------------------
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHhcCc-----ceeecCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999 9999999999999996 2556666666555 4678888777766555443
No 194
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=40.33 E-value=1e+02 Score=23.19 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=37.0
Q ss_pred EeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC--eecC
Q 024466 6 KTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG--KVLK 54 (267)
Q Consensus 6 Ktl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G--KiL~ 54 (267)
--.+|+.-.+.+.++.||.++-.++.++.| +..+...+..-| |.|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRg---l~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRG---INYAAVDLFLVGGDKPLV 52 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcC---CChhHEEEEEecCCcccc
Confidence 345788888999999999999999999999 777777776555 3453
No 195
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=40.04 E-value=1.1e+02 Score=23.84 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCCC-CC-CeEEEeCC--eecCCccchhhcCCCCCCEEEEEee
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDNYP-CG-QQLLIHNG--KVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~-g~d~ip-~~-~QrLIy~G--KiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.-+-||.++|+.++=++++... |...-+ ++ ..++-+.| ..+..+.++++.||++-+.|-+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 3468999999999999998643 322112 22 45667888 8999999999999999999887653
No 196
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=38.51 E-value=67 Score=26.02 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=33.8
Q ss_pred cHHHHHHHHHH--hCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccc
Q 024466 152 DLEQTIQQIMD--MGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSK 199 (267)
Q Consensus 152 ~~e~~I~~l~e--MG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~ 199 (267)
..|+.+++|.. .+ |.|+++..+|.+-+ +..+|||++|....-
T Consensus 30 tl~~Ia~~i~~~~s~---~t~~di~~vl~~~~---~~~~~~l~~G~sV~~ 73 (124)
T PF14848_consen 30 TLEDIAEEIAKEGST---LTRADIEAVLNALK---DEMIEALMNGYSVNL 73 (124)
T ss_pred CHHHHHHHHHHhCCC---CCHHHHHHHHHHHH---HHHHHHHhCCCEEEc
Confidence 35667777874 56 99999999998875 678899999998763
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=38.48 E-value=82 Score=29.87 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccccc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKN 200 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~ 200 (267)
.++..+-|.+-+ +..+.+++..+++.+.++|.+|++++-.+....|.
T Consensus 167 ~~~~~~~L~~~~-~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~ 213 (328)
T PRK05707 167 NEESLQWLQQAL-PESDERERIELLTLAGGSPLRALQLHEQGVREQRA 213 (328)
T ss_pred HHHHHHHHHHhc-ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHH
Confidence 455666666642 11678888899999999999999997765544443
No 198
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.33 E-value=38 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.552 Sum_probs=17.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHh
Q 024466 158 QQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 158 ~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
+.||+|| |...++.+=+|-|
T Consensus 7 ~dLi~lG---f~~~tA~~IIrqA 26 (59)
T PF11372_consen 7 KDLIELG---FSESTARDIIRQA 26 (59)
T ss_pred HHHHHcC---CCHHHHHHHHHHH
Confidence 6799999 9999999988865
No 199
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=38.09 E-value=22 Score=26.59 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHHhcCCh
Q 024466 166 GTWDKETVTRALQAAYNNP 184 (267)
Q Consensus 166 ~~f~Reqv~~ALrAAfnNp 184 (267)
|+|.|+|++ |..++|.|+
T Consensus 6 g~ftr~qA~-aV~a~y~NV 23 (70)
T PF06006_consen 6 GPFTREQAE-AVAAQYRNV 23 (70)
T ss_dssp ----HHHHH-HHHHH-TTE
T ss_pred CCccHHHHH-HHHHHhcce
Confidence 789999986 588888875
No 200
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=37.92 E-value=1.9e+02 Score=22.39 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=42.3
Q ss_pred CCcEEEEEeC-----CCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCe-----ecCCccchhhc-----CCCCCCEEEE
Q 024466 9 KGSHFEIRVQ-----PSDTVMAVKKNIEDVQGKDNYPC-GQQLLIHNGK-----VLKDETTLADN-----KVSEDGFLVV 72 (267)
Q Consensus 9 ~gk~~~IeVd-----~s~TV~dLK~kI~~~~g~d~ip~-~~QrLIy~GK-----iL~D~~tLsd~-----gIkegstIvv 72 (267)
+|....+.+. ++.+..+|+++|.+.++ ++. ....|-|... .|.++.-|.++ +-....++.+
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl 84 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFS---LSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRI 84 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhC---CCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEE
Confidence 4555555555 47899999999999998 665 5667777643 24444444433 3345677777
Q ss_pred Eee
Q 024466 73 MLS 75 (267)
Q Consensus 73 ~v~ 75 (267)
.++
T Consensus 85 ~v~ 87 (91)
T cd06398 85 DVT 87 (91)
T ss_pred EEE
Confidence 765
No 201
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=37.05 E-value=1e+02 Score=23.20 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-----CCeecCCccchhhcCCCCCCEEEEEee
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-H-----NGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI-y-----~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
++|-.=.+++.|+.+|+..|.+++..- +| ....+. . .|=-|+.+-.++|. ...|+.|.|+++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kL-YP-~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKL-YP-NEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHH-CC-CCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 455555789999999999999998631 44 333332 1 12234444445554 346777777764
No 202
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=36.22 E-value=2e+02 Score=24.43 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCCe----EEE-eCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKD-NYPCGQQ----LLI-HNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd-~s~TV~dLK~kI~~~~g~d-~ip~~~Q----rLI-y~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|||+|.. ....+.+-+. .+.||.+|-++--..+.+- ...++.. .|- -.|-+|+.+..|.+. +.+.+.|+.+
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV-~dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDV-VDDRDQLIAV 78 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHH-S-TTEEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEe-ccChhhhhee
Confidence 8999996 3445666666 4589999866554332200 0222322 333 256688888888887 5677888777
Q ss_pred eec
Q 024466 74 LSK 76 (267)
Q Consensus 74 v~k 76 (267)
..-
T Consensus 79 ydE 81 (145)
T PF12053_consen 79 YDE 81 (145)
T ss_dssp EEE
T ss_pred ecc
Confidence 654
No 203
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=36.10 E-value=1.1e+02 Score=23.25 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 21 DTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 21 ~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.+..+|+.|..++.+ ++....+|+ -.|-+++|+.-+..+ +.+++.+++.
T Consensus 21 ~sL~eL~~K~~~~l~---l~~~~~~lvL~eDGTeVddEeYF~tL---p~nT~l~~l~ 71 (78)
T cd01615 21 SSLEELLSKACEKLK---LPSAPVTLVLEEDGTEVDDEEYFQTL---PDNTVLMLLE 71 (78)
T ss_pred CCHHHHHHHHHHHcC---CCCCCeEEEEeCCCcEEccHHHHhcC---CCCcEEEEEC
Confidence 479999999999999 765566664 478888887655554 3445555543
No 204
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=35.83 E-value=69 Score=24.84 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=33.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCe------ecCCccc---h--hhcCCCCCCEEEEEe
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGK------VLKDETT---L--ADNKVSEDGFLVVML 74 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GK------iL~D~~t---L--sd~gIkegstIvv~v 74 (267)
++++...||.+|-+.+.+... ..+.+|+. .|+ +|-++.. + .++-+++||.|.++-
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL-----EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc-----hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 444467799999999988753 33334433 222 2323332 3 356799999998763
No 205
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=2.3e+02 Score=23.21 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=42.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC--Cccchhhc--CCCCCCEEEEEee
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLK--DETTLADN--KVSEDGFLVVMLS 75 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~--D~~tLsd~--gIkegstIvv~v~ 75 (267)
-...|++++|+..+-..|.+..+ ++..++-.+|-..-.. .|+.++++ +..-++.|+|...
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lk---l~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d~~Lvl~Yc 110 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLK---LQASDSLFLYVNNSFAPSPDQIVGNLYECFGTDGKLVLNYC 110 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhC---CcccCeEEEEEcCccCCCchhHHHHHHHhcCCCCEEEEEEe
Confidence 45678899999999999999999 8899998888766553 34444443 2333446655543
No 206
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.13 E-value=27 Score=26.53 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.2
Q ss_pred eehHHHHHHHhhhhccccceeeeehH
Q 024466 222 YNVLTFREFQKQLKLLSQWLIFLQVR 247 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (267)
.|-.=|..+++.+|+-|+||||+.++
T Consensus 40 LNk~ly~~lv~~~~i~K~DVVRI~v~ 65 (75)
T PF10015_consen 40 LNKKLYEKLVNKMKIDKLDVVRIRVE 65 (75)
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 46677888999999999999998764
No 207
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=34.67 E-value=1.8e+02 Score=32.39 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.5
Q ss_pred HHHhcC
Q 024466 177 LQAAYN 182 (267)
Q Consensus 177 LrAAfn 182 (267)
+|+-+|
T Consensus 154 nR~~In 159 (1228)
T PRK12270 154 NRIVIN 159 (1228)
T ss_pred HHHHHH
Confidence 344444
No 208
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.23 E-value=1.7e+02 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.0
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 024466 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (267)
Q Consensus 5 VKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy 48 (267)
++-..|.+.-+.|+.+.+..+|+.++.+..+ +... ..|=|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~---~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFG---AGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhC---CCCc-eEEEE
Confidence 3455677888999999999999999999998 4443 44433
No 209
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=33.17 E-value=99 Score=23.79 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCeecC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL-IHNGKVLK 54 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL-Iy~GKiL~ 54 (267)
..+.++|+.+.|=.++|+.|+..+| +.+...+. ++.||.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~---V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYG---VKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHT---SEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcC---CCeeEEEEeEeCCCceE
Confidence 5789999999999999999999999 77777644 67887543
No 210
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=32.25 E-value=61 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=21.8
Q ss_pred EEEeCCCc-EEEEEeC-CCCCHHHHHHHHHHHhC
Q 024466 4 TVKTLKGS-HFEIRVQ-PSDTVMAVKKNIEDVQG 35 (267)
Q Consensus 4 tVKtl~gk-~~~IeVd-~s~TV~dLK~kI~~~~g 35 (267)
..|..+.+ ...|.++ ...+|.+||..|.++.+
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhC
Confidence 34444443 3456766 56799999999988876
No 211
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=31.98 E-value=74 Score=28.06 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.+++++-+.+.| ++++++++..+.-.-|+|. ++.++.
T Consensus 80 ~e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~~-~~~m~~ 118 (213)
T PF01988_consen 80 EEKEELVEIYRAKG---LSEEDAEEIAEELSKDKDA-LDFMMR 118 (213)
T ss_pred hHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCchH-HHHHHh
Confidence 45678889999999 9999999999999999999 999998
No 212
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=31.04 E-value=1.1e+02 Score=25.25 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHH
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYL 191 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYL 191 (267)
|+-|.=+|+- | -+|+++++||.+|.+++-.|+=-|
T Consensus 85 eeDIkLV~eQa~---VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 85 EEDIKLVMEQAG---VSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCcHHHHHHHh
Confidence 6678877875 7 999999999999999998887555
No 213
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.82 E-value=54 Score=28.85 Aligned_cols=28 Identities=7% Similarity=0.273 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
..++++..|+++| |++.++.+|++....
T Consensus 147 ~~~e~~~aL~~LG---y~~~~a~~ai~~~~~ 174 (194)
T PRK14605 147 ANSDILATLTALG---YSSSEAAKAISSLGD 174 (194)
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhhc
Confidence 3578999999999 999999999988753
No 214
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=30.54 E-value=2.4e+02 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCChHH
Q 024466 170 KETVTRALQAAYNNPER 186 (267)
Q Consensus 170 Reqv~~ALrAAfnNpdR 186 (267)
..|=..||--.||..|.
T Consensus 246 dsQNt~A~LTTFNEvDM 262 (457)
T KOG0559|consen 246 DSQNTAAMLTTFNEVDM 262 (457)
T ss_pred hhhhhhhhhhhhhhhhH
Confidence 45566677777887775
No 215
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=54 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHhCCCCC-CHHHHHHHHHHh
Q 024466 149 AGNDLEQTIQQIMDMGGGTW-DKETVTRALQAA 180 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAA 180 (267)
+|++.++.|++|.+-+ | -++.|++||||-
T Consensus 6 ~gs~n~~LId~L~~~~---~Ir~~~v~~A~~a~ 35 (237)
T KOG1661|consen 6 SGSDNDDLIDNLRENK---IIRTRRVEQAMRAT 35 (237)
T ss_pred cCcchHHHHHHHHhcc---hhHHHHHHHHHHhh
Confidence 5778899999999999 7 777899999984
No 216
>PF09722 DUF2384: Protein of unknown function (DUF2384); InterPro: IPR024467 This domain is found predominantly in proteobacterial proteins. Its function in unknown.
Probab=29.89 E-value=51 Score=22.50 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=17.0
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 024466 175 RALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 175 ~ALrAAfnNpdRAvEYLl~~ 194 (267)
++++.-|+|+++|..||-++
T Consensus 2 ~~a~~vfgd~~~a~~Wl~~p 21 (54)
T PF09722_consen 2 KQAEEVFGDEDKARRWLRTP 21 (54)
T ss_pred hHHHHHHCCHHHHHHHHHCh
Confidence 46677889999999999983
No 217
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.33 E-value=1.6e+02 Score=22.45 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEE--EeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 21 DTVMAVKKNIEDVQGKDNYPCGQQLL--IHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 21 ~TV~dLK~kI~~~~g~d~ip~~~QrL--Iy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.+..+|+.|..+..+ ++.+..+| --.|-+++|+.-+..+ ++++..|++.
T Consensus 21 ~sL~EL~~K~~~~l~---~~~~~~~lvL~eDGT~Vd~EeyF~~L---pdnT~lm~L~ 71 (78)
T cd06539 21 SSLQELISKTLDALV---ITSGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMVLE 71 (78)
T ss_pred cCHHHHHHHHHHHhC---CCCCCcEEEEeCCCCEEccHHHHhhC---CCCCEEEEEC
Confidence 479999999999998 66555555 4578888887655554 3445544443
No 218
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=29.27 E-value=1.4e+02 Score=23.09 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV 52 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Qr-LIy~GKi 52 (267)
...+.+.|+...|=.++|+.|+..+| +.+...+ ++..||.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~---VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG---VKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceeEEEEEEeCCce
Confidence 46889999999999999999999999 7777764 4677764
No 219
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=29.20 E-value=73 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCccHHHHHHHHHHhCCCCC-CHHHHHH-HHHHh
Q 024466 148 VAGNDLEQTIQQIMDMGGGTW-DKETVTR-ALQAA 180 (267)
Q Consensus 148 ~~g~~~e~~I~~l~eMG~~~f-~Reqv~~-ALrAA 180 (267)
-.+..+.+.|+++++.| -| ++++|+| |||.-
T Consensus 8 ~lp~~~~~~i~~lV~~G--~y~s~SeviR~alr~l 40 (89)
T COG3609 8 RLPEQLVEFIDELVESG--RYKSRSEVIRAALRLL 40 (89)
T ss_pred eCCHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Confidence 35788999999999998 45 8999887 56553
No 220
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=29.17 E-value=79 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.501 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQ 178 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALr 178 (267)
+..+.++..|..|| |++++|..-|+
T Consensus 9 ~R~daA~dam~~lG---~~~~~v~~vl~ 33 (65)
T PF10440_consen 9 ERIDAALDAMRQLG---FSKKQVRPVLK 33 (65)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 56788999999999 99999987654
No 221
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=29.08 E-value=68 Score=26.65 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=41.7
Q ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccc--cchhHHHHHHH
Q 024466 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNL--LLFPFVVLAII 212 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~--~~~~~~~~~~~ 212 (267)
.-.+.-..|.+++.-| .+.+||..-|.+-|+|- -|+.|-...... -+.|++.|.+.
T Consensus 58 iA~dmR~~Vr~~i~~G---~sd~eI~~~~v~RYG~~-----Vl~~Pp~~~~t~~LW~~P~~lll~g 115 (126)
T PRK10144 58 VAVSMRHQVYSMVAEG---KSEVEIIGWMTERYGDF-----VRYNPPLTGQTLVLWALPVVLLLLM 115 (126)
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHhcCCe-----EEecCCCCcchHHHHHHHHHHHHHH
Confidence 3456778899999999 99999999999999973 455566666555 34577665443
No 222
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=28.31 E-value=29 Score=36.10 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=43.8
Q ss_pred HHHHHhcCCcccccc-cchhHHHHHHHHH-------------------hhcceeeeehHHHHHHHhhhhcccccee
Q 024466 187 AVDYLYSVRITSKNL-LLFPFVVLAIIIL-------------------LTSRFRRYNVLTFREFQKQLKLLSQWLI 242 (267)
Q Consensus 187 AvEYLl~~~~~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (267)
-+||=+-.+.++.=. -|-+-|+|.|.+- ++|.=-|-||+.|.|+|..++.-.-|+-
T Consensus 584 ~iEtRLk~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lC 659 (722)
T KOG0532|consen 584 LIETRLKVSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLC 659 (722)
T ss_pred HHHHHhcccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhc
Confidence 356766677766432 6778888888876 8888889999999999998888776653
No 223
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=28.11 E-value=35 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHH
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNI 30 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI 30 (267)
|+|.|.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7899884 5889999999998888887764
No 224
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.10 E-value=1.7e+02 Score=31.72 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=15.1
Q ss_pred ccccchhHHHHH--HHHHhhcceeeeehHHHHHH
Q 024466 199 KNLLLFPFVVLA--IIILLTSRFRRYNVLTFREF 230 (267)
Q Consensus 199 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 230 (267)
+++.+.|+=++- -|.|| .|| .-|.+-++-
T Consensus 691 kel~ilDsKtaQnLsIflg--S~r-mpyeeik~~ 721 (1102)
T KOG1924|consen 691 KELRILDSKTAQNLSIFLG--SFR-MPYEEIKNV 721 (1102)
T ss_pred hhheecchHHHHHHHHHHh--hcc-CCHHHHHHH
Confidence 344666766532 24555 444 566665543
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=27.44 E-value=78 Score=30.13 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccccc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKN 200 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~ 200 (267)
.++.++-|.+-|+ .+.+++..|++.+.++|.+|++++.++....|.
T Consensus 168 ~~~~~~~L~~~~~--~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~ 213 (325)
T PRK06871 168 EQQALDWLQAQSS--AEISEILTALRINYGRPLLALTFLEQGLLEQRK 213 (325)
T ss_pred HHHHHHHHHHHhc--cChHHHHHHHHHcCCCHHHHHHHhhCChHHHHH
Confidence 3556666666541 466678899999999999999999887765555
No 226
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.37 E-value=75 Score=22.63 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.5
Q ss_pred hcCChHHHHHHHhc
Q 024466 180 AYNNPERAVDYLYS 193 (267)
Q Consensus 180 AfnNpdRAvEYLl~ 193 (267)
.-|.+|+|.|||-.
T Consensus 35 qlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 35 QLGKYEEAKEYIKE 48 (62)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 34578899999854
No 227
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=26.35 E-value=79 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQA 179 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrA 179 (267)
++.+.....|.+.| |+.+++.+||.-
T Consensus 21 ~d~~~L~~~L~~aG---F~~~eI~~Al~W 46 (155)
T PF04361_consen 21 PDQDDLTRELSAAG---FEDEEINKALDW 46 (155)
T ss_pred CCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 45688899999999 999999887754
No 228
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=25.85 E-value=1.6e+02 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
-..+.|.-+.+-| -..|++++||.-|. ++-+|++.|.+
T Consensus 113 ~~~e~v~v~a~a~---v~~eeAr~aleeag-Dl~~A~k~l~~ 150 (153)
T COG4008 113 PPVEEVEVLADAF---VTPEEAREALEEAG-DLRTAMKILRM 150 (153)
T ss_pred CcHHHHHHHHHhc---CCHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 3467888899999 99999999999998 99999999865
No 229
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=25.78 E-value=39 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCcccccc
Q 024466 170 KETVTRALQAAYNNPERAVDYLYSVRITSKNL 201 (267)
Q Consensus 170 Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~ 201 (267)
+++..+|+..||.++.+|.+|-|...+..|+.
T Consensus 66 ~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPf 97 (207)
T PF11288_consen 66 REDAEKAFDLAYSDVRAAFDYYLANYNNGRPF 97 (207)
T ss_pred cchhHHHHHhhHHHHHHHHHHHHHhcCCCCCE
Confidence 45688999999999999999999988888875
No 230
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=25.50 E-value=59 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHhCCCCCCCCCeEEE---eCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 29 NIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 29 kI~~~~g~d~ip~~~QrLI---y~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.|+++.. +.++...|+ .++..|+-++.|.++||++ |+.+=.+
T Consensus 2 ~IC~KCE---fdp~htvLLrD~~s~e~LdLsKSLndlGirE---LYA~D~~ 46 (79)
T PF09469_consen 2 AICEKCE---FDPEHTVLLRDYQSGEELDLSKSLNDLGIRE---LYAWDTS 46 (79)
T ss_dssp HHHHHTT-----TTSEEEES-SS---B--TTS-HHHHT-SE---EEEEE--
T ss_pred ccccccc---cCcceEEEeecCCCCCcccccccHHHhhHHH---HHhhccc
Confidence 4677755 777777776 4567898899999999995 6666544
No 231
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=25.50 E-value=53 Score=23.20 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=22.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED 32 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~ 32 (267)
|.|++++.+|+.|.++.+.-.--.-||..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 78999999999999985544444555666654
No 232
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.33 E-value=1.8e+02 Score=27.47 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHh----CCC--------CCCCCCeEEEeCCeecCCccchhhcC---CCCCCEEEEEeecC
Q 024466 19 PSDTVMAVKKNIEDVQ----GKD--------NYPCGQQLLIHNGKVLKDETTLADNK---VSEDGFLVVMLSKS 77 (267)
Q Consensus 19 ~s~TV~dLK~kI~~~~----g~d--------~ip~~~QrLIy~GKiL~D~~tLsd~g---IkegstIvv~v~k~ 77 (267)
.-.-|..++..|.++. ... .-+.+...|+++|++|..+.||+... =+.++-|++..+.+
T Consensus 256 ~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 256 RMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred chhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3346888888888887 100 03566779999999999998887764 36777777776653
No 233
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=24.87 E-value=92 Score=25.86 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=42.3
Q ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccc--cchhHHHHHHH
Q 024466 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNL--LLFPFVVLAII 212 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~--~~~~~~~~~~~ 212 (267)
.-.+.-..|.++++-| .+.+|+...|..-|+|- -|+.|....... -+.|++.|.+.
T Consensus 58 iA~dmR~~Vr~~i~~G---~Sd~eI~~~~v~RYG~~-----Vly~Pp~~~~t~~LW~~P~lll~~G 115 (126)
T TIGR03147 58 IAYDLRHEVYSMVNEG---KSNQQIIDFMTARFGDF-----VLYNPPFKWQTLLLWLLPVLLLLLA 115 (126)
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHhcCCe-----EEecCCCCcchHHHHHHHHHHHHHH
Confidence 3456778899999999 99999999999999974 455566666555 44677775543
No 234
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=24.13 E-value=1.5e+02 Score=22.98 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=43.4
Q ss_pred EEEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCC-CeEEEeCCe--ecCCccchhhc-----CCCCCCEE
Q 024466 2 KLTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQ--GKDNYPCG-QQLLIHNGK--VLKDETTLADN-----KVSEDGFL 70 (267)
Q Consensus 2 kItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~--g~d~ip~~-~QrLIy~GK--iL~D~~tLsd~-----gIkegstI 70 (267)
+|.|... .+..+++.++.+.|+.+|-..+-.+. +....... +-.|=-.|+ -|..+..|.+| .++.+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4666666 45678999999999999998888772 11101111 344544554 35566777777 35666677
Q ss_pred EEEee
Q 024466 71 VVMLS 75 (267)
Q Consensus 71 vv~v~ 75 (267)
++++.
T Consensus 98 ~L~Lv 102 (106)
T PF00794_consen 98 HLVLV 102 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 235
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=23.29 E-value=95 Score=28.19 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=39.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----Ce--ecCCccchhhcCCCCCCEEEEEee
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----GK--VLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~----GK--iL~D~~tLsd~gIkegstIvv~v~ 75 (267)
+-|+.+++|.++-..|.+..| +|.+.--++|. ++ .++.+.++....|.+||.|.+-..
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g---~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAG---LPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT-----TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE-
T ss_pred EEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEec
Confidence 467889999999999999999 88776655554 44 367789999999999999987653
No 236
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=23.21 E-value=2.4e+02 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=17.9
Q ss_pred hhcceeee-ehHHHHHHHhhhhccc
Q 024466 215 LTSRFRRY-NVLTFREFQKQLKLLS 238 (267)
Q Consensus 215 ~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (267)
..+-++++ |+++|++...+|+-++
T Consensus 127 fa~~~~~f~~~~~~~~~~~~~~~~~ 151 (154)
T PRK00464 127 FASVYRSFKDVDDFEEEIEELAKKK 151 (154)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHhcc
Confidence 45566777 8999999988776543
No 237
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=23.19 E-value=1.7e+02 Score=25.18 Aligned_cols=68 Identities=22% Similarity=0.421 Sum_probs=40.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH-HHH---HHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK-NIE---DVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLV 71 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~-kI~---~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIv 71 (267)
|.|++. ++|+.+.++++|..++.++-. .+. .+.||+.-...-..++++|+...-..++... -+|..|.
T Consensus 2 ~~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~--~~G~~It 73 (156)
T COG2080 2 MPITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQ--AEGAEIT 73 (156)
T ss_pred CcEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHH--hCCCeEE
Confidence 455555 789999999999998777654 322 3344432233445777788776554444332 2344443
No 238
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=22.40 E-value=4e+02 Score=21.18 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEE-EeCC---eecCC-c-------cchhhcCCCCCCEEEEE
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLL-IHNG---KVLKD-E-------TTLADNKVSEDGFLVVM 73 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~-~~QrL-Iy~G---KiL~D-~-------~tLsd~gIkegstIvv~ 73 (267)
.++.-.++.+..+.||.+|-..+..+.. ++. +.-+| +..| |+|.. + +.|...|.++.|-|..+
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~---l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~l 85 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFY---LPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIEDI 85 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhc---CCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHHh
Confidence 4555567899999999999999999987 443 33344 4444 45542 2 23455555555555444
No 239
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=21.94 E-value=62 Score=21.19 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHhcCChH
Q 024466 169 DKETVTRALQAAYNNPE 185 (267)
Q Consensus 169 ~Reqv~~ALrAAfnNpd 185 (267)
+...|.+-++||-+||.
T Consensus 2 ~~~~V~~G~KAal~NPn 18 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPN 18 (36)
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 45789999999999994
No 240
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=21.92 E-value=2e+02 Score=22.01 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=31.2
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe
Q 024466 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ 44 (267)
Q Consensus 5 VKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q 44 (267)
|-..+|+...+-|.+++|+.++-+..++..+ +.+.+-
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~---ldp~eh 40 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQ---LDPMEH 40 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcC---CChhHh
Confidence 5556888889999999999999999999998 555554
No 241
>PRK13042 superantigen-like protein; Reviewed
Probab=21.68 E-value=3.6e+02 Score=25.53 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=6.2
Q ss_pred HHHHHHHhcCC
Q 024466 173 VTRALQAAYNN 183 (267)
Q Consensus 173 v~~ALrAAfnN 183 (267)
-...|+.-|+-
T Consensus 102 ~~~~Lk~YYs~ 112 (291)
T PRK13042 102 KFKDLRAYYTK 112 (291)
T ss_pred hHHHHHHhccC
Confidence 44566665553
No 242
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=21.47 E-value=82 Score=27.92 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCeEE--EeCC-----eecCCcc--chhhcCC
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---GQQLL--IHNG-----KVLKDET--TLADNKV 64 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~---~~QrL--Iy~G-----KiL~D~~--tLsd~gI 64 (267)
|-.|.+-|.+++|..++|++|.++.| ++. +..|+ +..+ +-|+|+. .|.+..-
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlg---v~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~~~ 195 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLG---VSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDEIF 195 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH------HHHHTT-EEEEEETTEE---EE--TT-T----GGGT
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhC---CChhhheeEEEEEEecCCcccceeccccchhhhhhhhc
Confidence 45588899999999999999999999 543 34455 4444 3566654 5555533
No 243
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=21.24 E-value=2e+02 Score=26.11 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=30.8
Q ss_pred EEEEEeCC---CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 024466 2 KLTVKTLK---GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI 47 (267)
Q Consensus 2 kItVKtl~---gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI 47 (267)
.|+|+... +..|+++++..+|-.+|-++|++..| +.++..||.
T Consensus 178 ~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~---~dP~~lr~~ 223 (249)
T PF12436_consen 178 EVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLN---VDPEHLRFF 223 (249)
T ss_dssp EEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHT---S-GGGEEEE
T ss_pred EEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEE
Confidence 45555432 34799999999999999999999999 778888884
No 244
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.19 E-value=2.2e+02 Score=22.51 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=42.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee---------cCCccchhhcCCCCCCEEEE
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV---------LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Qr-LIy~GKi---------L~D~~tLsd~gIkegstIvv 72 (267)
..++.+.|+++.|=.++|+.|++.+| +-+.... |+..|+. +..+..-+..-+..|..|.+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~---VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFG---VKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 46789999999999999999999999 6676664 3555541 34444445555556665543
No 245
>PRK01777 hypothetical protein; Validated
Probab=21.19 E-value=4e+02 Score=20.74 Aligned_cols=62 Identities=10% Similarity=0.001 Sum_probs=39.6
Q ss_pred CEEEEEeC-CC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------CeEEEeCCeecCCccchhhcCCCCCCEE
Q 024466 1 MKLTVKTL-KG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-------QQLLIHNGKVLKDETTLADNKVSEDGFL 70 (267)
Q Consensus 1 MkItVKtl-~g--k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~-------~QrLIy~GKiL~D~~tLsd~gIkegstI 70 (267)
|+|.|-.- .. ....+++..+.||.++-+.. | ++.. ..++.-+||...- |.-+++||.|
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----g---i~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRV 71 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----G---LLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRV 71 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----C---CCccCcccccccceEEEeCeECCC-----CCcCCCCCEE
Confidence 45665432 22 33568899999999987664 4 3333 2355567776654 3457889999
Q ss_pred EEEe
Q 024466 71 VVML 74 (267)
Q Consensus 71 vv~v 74 (267)
-+.-
T Consensus 72 eIyr 75 (95)
T PRK01777 72 EIYR 75 (95)
T ss_pred EEec
Confidence 8764
No 246
>PF07108 PipA: PipA protein; InterPro: IPR010777 This family consists of several Salmonella PipA (pathogenicity island-encoded protein A) and related phage sequences. PipA is thought to contribute to enteric but not to systemic salmonellosis [].
Probab=21.14 E-value=1.7e+02 Score=25.62 Aligned_cols=40 Identities=33% Similarity=0.431 Sum_probs=23.5
Q ss_pred CChHHHHHHHhcC--Cc---ccccccchhHHH--HHHHHH----hhcceee
Q 024466 182 NNPERAVDYLYSV--RI---TSKNLLLFPFVV--LAIIIL----LTSRFRR 221 (267)
Q Consensus 182 nNpdRAvEYLl~~--~~---~~~~~~~~~~~~--~~~~~~----~~~~~~~ 221 (267)
-+|+-+||||++| -| +|.|--.+...+ |.-|.+ -.-+|||
T Consensus 32 L~Pe~~~ey~iSg~ggidpd~EiDdd~Y~eC~~eLS~il~~AYtqs~TFRR 82 (200)
T PF07108_consen 32 LEPEQVVEYLISGAGGIDPDTEIDDDIYDECYDELSSILQNAYTQSETFRR 82 (200)
T ss_pred cCHHHHHHHHHhCCCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4799999999995 22 344544555544 334444 2345655
No 247
>PRK03430 hypothetical protein; Validated
Probab=20.64 E-value=1.2e+02 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQ 178 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALr 178 (267)
++.++.-..|.+-| |+++++.+||.
T Consensus 21 pd~~~L~~~L~~aG---F~~~eI~~AL~ 45 (157)
T PRK03430 21 VDQDKLEDDLTDAG---FHREDIYNALL 45 (157)
T ss_pred CCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 45788999999999 99999987764
No 248
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=20.59 E-value=61 Score=35.70 Aligned_cols=65 Identities=8% Similarity=-0.111 Sum_probs=50.3
Q ss_pred eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 7 tl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++....+..-+....++...|.+|..+.| |+...++|++-|..++++..++.++...+......+
T Consensus 331 ~l~~p~~~~~~~~~~~~~~~~p~~~~qtg---ipi~~~~l~~vg~~~n~d~P~s~~~~e~~~~~p~~~ 395 (1143)
T KOG4248|consen 331 NLACPPPRHLHVVRPMSHYTTPMVLQQTG---IPIQINVLTTVGMTGNGDRPPSTPNAEAPPPGPGQA 395 (1143)
T ss_pred cccCCCCceeeecchhhhccCceeeeccc---ccccccceeeecccccCCCCCCccccccCCCCCccc
Confidence 34444455445556677888999999999 999999999999999999999988877666655433
No 249
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.36 E-value=1.8e+02 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.403 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHhCCCCC--CHHHHHHHHHHh
Q 024466 152 DLEQTIQQIMDMGGGTW--DKETVTRALQAA 180 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f--~Reqv~~ALrAA 180 (267)
+.+..++.|.+-| | +.+.+.++|+.+
T Consensus 20 ~~~~~l~~l~~~g---~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAG---FRISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcC---cccCHHHHHHHHHHc
Confidence 6788899999999 9 899999999875
Done!