Query 024466
Match_columns 267
No_of_seqs 258 out of 1390
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 6.8E-38 2.3E-42 296.7 20.4 194 1-198 8-209 (368)
2 3m62_B UV excision repair prot 99.8 2.8E-20 9.6E-25 146.8 8.5 77 1-80 2-78 (106)
3 1uel_A HHR23B, UV excision rep 99.8 6.9E-19 2.3E-23 135.8 12.1 77 1-80 1-80 (95)
4 4fbj_B NEDD8; effector-HOST ta 99.8 4.2E-19 1.4E-23 135.2 10.3 80 1-83 1-80 (88)
5 4dwf_A HLA-B-associated transc 99.8 4.3E-19 1.5E-23 134.8 9.7 75 1-79 6-80 (90)
6 3phx_B Ubiquitin-like protein 99.8 7.1E-19 2.4E-23 130.3 10.5 74 1-77 5-78 (79)
7 2wyq_A HHR23A, UV excision rep 99.8 1.4E-18 4.8E-23 130.1 10.3 76 1-79 6-84 (85)
8 2kk8_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 131.9 9.6 72 1-75 11-83 (84)
9 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.2E-18 7.7E-23 132.1 11.0 77 1-80 2-78 (96)
10 4a20_A Ubiquitin-like protein 99.8 9.8E-19 3.3E-23 136.9 8.8 74 1-77 20-97 (98)
11 2lxa_A Ubiquitin-like protein 99.8 8.6E-19 2.9E-23 134.4 7.4 74 1-77 2-79 (87)
12 3v6c_B Ubiquitin; structural g 99.8 2.5E-18 8.7E-23 131.2 10.0 74 1-77 18-91 (91)
13 3plu_A Ubiquitin-like modifier 99.8 2.6E-18 8.8E-23 133.4 9.4 70 1-73 22-91 (93)
14 1ndd_A NEDD8, protein (ubiquit 99.7 7.8E-18 2.7E-22 122.5 10.8 74 1-77 1-74 (76)
15 1wx7_A Ubiquilin 3; ubiquitin- 99.7 7.9E-18 2.7E-22 132.3 11.5 75 1-79 18-92 (106)
16 3dbh_I NEDD8; cell cycle, acti 99.7 4.8E-18 1.6E-22 127.7 9.2 75 1-78 13-87 (88)
17 2faz_A Ubiquitin-like containi 99.7 6.6E-18 2.3E-22 124.6 9.7 73 1-76 3-77 (78)
18 3a9j_A Ubiquitin; protein comp 99.7 1.4E-17 4.7E-22 121.2 10.9 75 1-78 1-75 (76)
19 4hcn_B Polyubiquitin, ubiquiti 99.7 8.6E-18 2.9E-22 130.3 10.2 75 1-78 23-97 (98)
20 1uh6_A Ubiquitin-like 5; beta- 99.7 3.9E-18 1.3E-22 134.2 8.0 71 1-74 29-99 (100)
21 1wy8_A NP95-like ring finger p 99.7 1.9E-17 6.6E-22 125.2 11.5 76 1-79 8-85 (89)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 9.6E-18 3.3E-22 125.1 9.5 76 1-79 4-79 (85)
23 1ttn_A DC-UBP, dendritic cell- 99.7 8.4E-18 2.9E-22 132.3 9.6 76 1-79 24-99 (106)
24 2dzi_A Ubiquitin-like protein 99.7 1.1E-17 3.9E-22 123.6 9.7 73 1-76 8-80 (81)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.5E-17 5.2E-22 123.8 10.2 76 1-79 4-79 (85)
26 1wgd_A Homocysteine-responsive 99.7 1.5E-17 5E-22 127.6 10.2 76 1-79 8-89 (93)
27 4eew_A Large proline-rich prot 99.7 1.1E-17 3.8E-22 126.4 9.3 71 1-75 18-88 (88)
28 2uyz_B Small ubiquitin-related 99.7 9.6E-18 3.3E-22 124.2 8.7 75 1-78 4-78 (79)
29 2hj8_A Interferon-induced 17 k 99.7 8.9E-18 3E-22 127.7 8.5 76 1-79 5-80 (88)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 2.5E-17 8.5E-22 123.9 10.8 76 1-79 8-83 (87)
31 1sif_A Ubiquitin; hydrophobic 99.7 2E-17 6.9E-22 125.8 10.1 75 1-78 10-84 (88)
32 1wia_A Hypothetical ubiquitin- 99.7 2E-17 6.8E-22 127.1 10.0 74 1-80 8-82 (95)
33 1v5o_A 1700011N24RIK protein; 99.7 2.6E-17 9E-22 128.7 10.4 76 1-79 8-88 (102)
34 2kan_A Uncharacterized protein 99.7 3E-17 1E-21 126.9 10.4 75 1-79 16-91 (94)
35 2bwf_A Ubiquitin-like protein 99.7 3.6E-17 1.2E-21 119.8 10.2 71 1-75 5-75 (77)
36 1v2y_A 3300001G02RIK protein; 99.7 1.5E-17 5.1E-22 131.9 7.9 76 1-79 8-99 (105)
37 1yx5_B Ubiquitin; proteasome, 99.7 6.5E-17 2.2E-21 124.9 11.0 75 1-78 1-75 (98)
38 1wyw_B Ubiquitin-like protein 99.7 2.9E-17 1E-21 127.3 9.1 75 1-78 22-96 (97)
39 1wju_A NEDD8 ultimate buster-1 99.7 4.7E-17 1.6E-21 128.0 9.6 71 2-75 17-91 (100)
40 1wx8_A Riken cDNA 4931431F19; 99.7 3E-17 1E-21 126.2 8.1 75 1-79 18-92 (96)
41 2klc_A Ubiquilin-1; ubiquitin- 99.7 8.1E-17 2.8E-21 125.9 10.4 74 1-78 26-99 (101)
42 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.4E-16 4.7E-21 128.4 12.0 75 1-76 17-99 (116)
43 1yqb_A Ubiquilin 3; structural 99.7 6.5E-17 2.2E-21 126.3 9.6 75 1-79 23-97 (100)
44 3vdz_A Ubiquitin-40S ribosomal 99.7 8.4E-17 2.9E-21 127.8 10.2 75 1-78 36-110 (111)
45 3b1l_X E3 ubiquitin-protein li 99.5 1.6E-18 5.5E-23 127.1 0.0 75 1-78 1-75 (76)
46 2l7r_A Ubiquitin-like protein 99.7 1.2E-16 4.1E-21 122.9 9.7 73 1-78 20-92 (93)
47 1j8c_A Ubiquitin-like protein 99.7 1.2E-16 4E-21 129.9 10.0 75 1-79 33-107 (125)
48 2gow_A HCG-1 protein, ubiquiti 99.7 1.7E-16 5.7E-21 129.4 10.6 74 1-77 18-101 (125)
49 3l0w_B Monoubiquitinated proli 99.7 2.5E-16 8.5E-21 134.1 11.9 77 1-80 1-77 (169)
50 1x1m_A Ubiquitin-like protein 99.7 2.6E-16 8.9E-21 124.1 10.2 74 1-77 13-101 (107)
51 1wgg_A Ubiquitin carboxyl-term 99.7 1.5E-16 5E-21 123.5 8.4 72 1-77 8-80 (96)
52 2ojr_A Ubiquitin; lanthide-bin 99.7 5.1E-16 1.8E-20 123.0 10.8 75 1-78 36-110 (111)
53 3rt3_B Ubiquitin-like protein 99.7 3.7E-16 1.3E-20 129.9 10.4 76 1-79 82-157 (159)
54 1v5t_A 8430435I17RIK protein; 99.7 4.6E-16 1.6E-20 119.0 9.7 72 1-76 8-83 (90)
55 2kdi_A Ubiquitin, vacuolar pro 99.7 7E-16 2.4E-20 123.2 11.1 76 1-79 10-85 (114)
56 1wxv_A BAG-family molecular ch 99.7 6E-16 2.1E-20 118.1 10.3 73 1-77 8-86 (92)
57 3m63_B Ubiquitin domain-contai 99.7 8.9E-17 3E-21 125.8 5.7 72 1-76 29-100 (101)
58 1se9_A Ubiquitin family; ubiqu 99.6 4.2E-16 1.4E-20 127.2 9.6 79 1-79 17-106 (126)
59 2kdb_A Homocysteine-responsive 99.6 2E-16 6.8E-21 123.9 7.2 71 1-73 24-99 (99)
60 1ify_A HHR23A, UV excision rep 99.6 1.4E-16 4.8E-21 109.8 5.4 48 146-197 1-48 (49)
61 1we6_A Splicing factor, putati 99.6 6.2E-16 2.1E-20 122.4 9.0 76 1-79 28-107 (111)
62 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.6E-20 127.2 10.5 72 1-75 3-76 (159)
63 3u30_A Ubiquitin, linear DI-ub 99.6 1.1E-15 3.6E-20 129.2 10.5 74 1-77 21-94 (172)
64 3q3f_A Ribonuclease/ubiquitin 99.6 8.1E-16 2.8E-20 133.5 9.6 76 1-79 106-181 (189)
65 2kd0_A LRR repeats and ubiquit 99.6 1.2E-15 4.2E-20 115.5 9.5 70 3-75 14-83 (85)
66 2fnj_B Transcription elongatio 99.6 6.7E-16 2.3E-20 124.7 8.3 72 1-75 1-80 (118)
67 1v86_A DNA segment, CHR 7, way 99.6 7.2E-16 2.5E-20 119.2 7.4 71 1-76 18-88 (95)
68 4ajy_B Transcription elongatio 99.6 1E-15 3.6E-20 123.5 8.3 73 1-76 1-81 (118)
69 4dbg_A Ranbp-type and C3HC4-ty 99.6 2E-15 6.9E-20 119.6 9.8 73 1-76 25-100 (105)
70 2daf_A FLJ35834 protein; hypot 99.6 2.4E-15 8.1E-20 121.2 9.7 74 2-78 17-91 (118)
71 3u5e_m 60S ribosomal protein L 99.6 5.8E-17 2E-21 131.7 0.1 76 1-79 1-76 (128)
72 3b08_A Polyubiquitin-C, ubiqui 99.6 4.1E-15 1.4E-19 121.6 11.0 73 1-76 1-73 (152)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 6E-15 2.1E-19 120.5 10.6 75 1-78 77-151 (152)
74 3u30_A Ubiquitin, linear DI-ub 99.6 4.4E-15 1.5E-19 125.4 8.8 75 1-78 97-171 (172)
75 1we7_A SF3A1 protein; structur 99.6 9.6E-15 3.3E-19 116.4 10.3 76 1-79 26-111 (115)
76 3u5c_f 40S ribosomal protein S 99.6 2.9E-16 9.8E-21 131.9 1.1 77 1-80 1-77 (152)
77 2dzj_A Synaptic glycoprotein S 99.6 3E-15 1E-19 114.6 6.2 69 1-72 11-85 (88)
78 2dzm_A FAS-associated factor 1 99.5 3E-14 1E-18 111.8 7.0 71 1-75 9-81 (100)
79 3ai5_A Yeast enhanced green fl 99.5 5.7E-14 1.9E-18 130.0 9.8 73 1-76 234-306 (307)
80 1wf9_A NPL4 family protein; be 99.5 6E-14 2.1E-18 110.7 7.9 71 1-75 8-94 (107)
81 4b6w_A Tubulin-specific chaper 99.5 7.5E-14 2.6E-18 106.5 7.0 73 2-77 4-85 (86)
82 2kjr_A CG11242; UBL, ubiquitin 99.5 1.7E-13 5.7E-18 106.4 8.7 70 1-73 16-93 (95)
83 1v6e_A Cytoskeleton-associated 99.4 5.2E-13 1.8E-17 102.9 8.6 73 1-76 8-88 (95)
84 2kj6_A Tubulin folding cofacto 99.4 6E-13 2.1E-17 103.7 8.9 71 2-75 16-95 (97)
85 2xzm_9 RPS31E; ribosome, trans 99.4 1.9E-14 6.4E-19 124.9 0.3 71 1-79 1-71 (189)
86 1vg5_A RSGI RUH-014, rhomboid 99.4 3E-13 1E-17 100.5 6.1 46 150-198 26-71 (73)
87 2kzr_A Ubiquitin thioesterase 99.4 5E-13 1.7E-17 101.1 7.4 71 1-75 1-77 (86)
88 2bwb_A Ubiquitin-like protein 99.4 6.3E-13 2.1E-17 90.4 5.3 41 151-194 5-46 (46)
89 2g3q_A Protein YBL047C; endocy 99.4 8.6E-13 2.9E-17 88.1 5.4 39 153-194 4-42 (43)
90 3shq_A UBLCP1; phosphatase, hy 99.4 9.1E-13 3.1E-17 122.5 7.5 72 1-76 6-80 (320)
91 2jy5_A Ubiquilin-1; UBA, alter 99.3 1.9E-12 6.3E-17 90.2 6.5 42 150-194 9-51 (52)
92 2io1_B Small ubiquitin-related 99.3 3.7E-12 1.3E-16 98.6 8.5 76 1-79 8-83 (94)
93 1t0y_A Tubulin folding cofacto 99.3 4.8E-12 1.6E-16 102.0 8.8 73 1-76 7-87 (122)
94 1vej_A Riken cDNA 4931431F19; 99.3 5E-12 1.7E-16 94.1 7.6 43 150-195 26-69 (74)
95 1wm3_A Ubiquitin-like protein 99.3 1.3E-11 4.5E-16 90.6 9.2 71 1-74 2-72 (72)
96 1wr1_B Ubiquitin-like protein 99.3 3.4E-12 1.2E-16 90.8 4.8 42 150-194 14-56 (58)
97 2knz_A Ubiquilin-4; cytoplasm, 99.3 3.9E-12 1.3E-16 88.8 5.0 42 151-195 9-51 (53)
98 1veg_A NEDD8 ultimate buster-1 99.3 5.1E-12 1.8E-16 95.9 5.7 43 153-198 29-73 (83)
99 2io0_B Small ubiquitin-related 99.2 2.9E-11 9.9E-16 93.1 9.6 75 1-78 6-80 (91)
100 1wji_A Tudor domain containing 99.2 5.8E-12 2E-16 91.0 4.8 41 153-196 9-49 (63)
101 3a4r_A Nfatc2-interacting prot 99.2 4.8E-11 1.7E-15 89.2 10.0 70 1-73 8-78 (79)
102 1z96_A DNA-damage, UBA-domain 99.2 1.1E-11 3.6E-16 81.0 5.3 39 151-192 2-40 (40)
103 1wiv_A UBP14, ubiquitin-specif 99.2 1.4E-11 4.8E-16 91.5 5.3 40 153-195 29-68 (73)
104 2dak_A Ubiquitin carboxyl-term 99.2 1.1E-11 3.7E-16 89.4 4.5 40 152-194 8-47 (63)
105 2ekk_A UBA domain from E3 ubiq 99.2 1.5E-11 5.1E-16 83.6 4.6 38 153-194 9-46 (47)
106 1wgn_A UBAP1, ubiquitin associ 99.2 1.2E-11 4E-16 88.3 4.2 44 148-195 15-58 (63)
107 2d07_B Ubiquitin-like protein 99.2 7.2E-11 2.5E-15 91.0 9.1 74 1-77 18-91 (93)
108 1wz0_A Ubiquitin-like protein 99.2 7.9E-11 2.7E-15 92.9 8.9 75 1-78 25-99 (104)
109 2cpw_A CBL-interacting protein 99.1 2.6E-11 8.8E-16 87.8 4.0 39 154-195 20-59 (64)
110 2dna_A Unnamed protein product 99.1 4.9E-11 1.7E-15 87.0 5.1 42 150-194 16-58 (67)
111 2crn_A Ubash3A protein; compac 99.1 2.1E-11 7.1E-16 88.3 2.8 42 151-195 7-49 (64)
112 2k8h_A Small ubiquitin protein 99.1 1.4E-10 4.7E-15 92.4 7.5 75 1-78 27-101 (110)
113 2dag_A Ubiquitin carboxyl-term 99.1 6.9E-11 2.3E-15 87.9 4.8 40 153-195 9-49 (74)
114 2eke_C Ubiquitin-like protein 99.1 2.8E-10 9.6E-15 90.1 8.4 73 1-77 32-104 (106)
115 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 6.3E-11 2.2E-15 85.7 3.0 38 154-194 10-48 (64)
116 2dai_A Ubadc1, ubiquitin assoc 99.0 1.8E-10 6.2E-15 87.5 5.0 40 153-195 29-68 (83)
117 1wjn_A Tubulin-folding protein 99.0 6.9E-10 2.4E-14 85.5 8.3 72 2-76 11-93 (97)
118 2dah_A Ubiquilin-3; UBA domain 99.0 4.8E-10 1.7E-14 78.5 5.6 40 152-194 8-48 (54)
119 1vek_A UBP14, ubiquitin-specif 99.0 2.8E-10 9.7E-15 86.6 4.7 39 153-194 29-68 (84)
120 2dkl_A Trinucleotide repeat co 99.0 7.9E-10 2.7E-14 84.3 5.6 40 154-196 22-61 (85)
121 2cwb_A Chimera of immunoglobul 98.9 1.2E-09 4E-14 86.8 5.1 42 151-195 64-106 (108)
122 2lbc_A Ubiquitin carboxyl-term 98.9 1.4E-09 4.6E-14 88.2 5.6 40 153-195 78-117 (126)
123 1dv0_A DNA repair protein HHR2 98.9 4.5E-10 1.5E-14 76.5 1.8 41 152-195 3-43 (47)
124 2ooa_A E3 ubiquitin-protein li 98.8 6E-09 2E-13 71.9 5.1 39 152-193 10-48 (52)
125 2d9s_A CBL E3 ubiquitin protei 98.8 7.8E-09 2.7E-13 71.7 5.5 42 153-197 9-51 (53)
126 3kyd_D Small ubiquitin-related 98.7 4.2E-08 1.4E-12 78.7 9.4 72 1-75 41-112 (115)
127 4ae4_A Ubiquitin-associated pr 98.7 1.5E-08 5E-13 81.6 5.2 40 152-194 75-114 (118)
128 2oo9_A E3 ubiquitin-protein li 98.7 2.9E-08 1E-12 66.6 5.8 41 150-193 1-41 (46)
129 2juj_A E3 ubiquitin-protein li 98.7 2.5E-08 8.6E-13 69.4 5.2 46 151-199 5-51 (56)
130 2pjh_A Protein NPL4, nuclear p 98.6 3.2E-08 1.1E-12 74.2 4.6 69 1-73 5-78 (80)
131 3pge_A SUMO-modified prolifera 98.5 3.9E-07 1.3E-11 79.5 9.7 75 1-79 30-104 (200)
132 3k9o_A Ubiquitin-conjugating e 98.5 8.6E-08 3E-12 83.2 5.1 42 149-193 159-200 (201)
133 3tix_A Ubiquitin-like protein 98.4 4.2E-07 1.4E-11 78.9 7.2 75 1-79 58-132 (207)
134 4ae4_A Ubiquitin-associated pr 98.3 5.5E-07 1.9E-11 72.4 5.4 41 151-194 6-46 (118)
135 3goe_A DNA repair protein RAD6 98.3 5.7E-06 1.9E-10 62.0 9.4 70 2-74 11-81 (82)
136 2cp8_A NEXT to BRCA1 gene 1 pr 98.2 1.9E-06 6.6E-11 60.1 5.1 41 150-193 6-47 (54)
137 2lbc_A Ubiquitin carboxyl-term 98.2 8E-07 2.7E-11 71.7 3.7 38 154-194 4-42 (126)
138 1wj7_A Hypothetical protein (R 98.2 2.1E-06 7.2E-11 67.5 5.8 42 151-195 37-79 (104)
139 2jxx_A Nfatc2-interacting prot 98.1 1.2E-05 4E-10 62.5 9.3 69 2-73 27-96 (97)
140 3v7o_A Minor nucleoprotein VP3 98.1 3.8E-07 1.3E-11 80.2 0.0 74 1-78 22-95 (227)
141 2qsf_X RAD23, UV excision repa 98.1 3.3E-06 1.1E-10 71.9 5.2 43 150-195 127-169 (171)
142 4efo_A Serine/threonine-protei 97.9 6.9E-05 2.4E-09 57.9 9.0 68 3-73 15-86 (94)
143 2cos_A Serine/threonine protei 97.9 1.4E-05 4.9E-10 55.4 4.5 43 152-197 8-51 (54)
144 2l76_A Nfatc2-interacting prot 97.9 9.6E-05 3.3E-09 57.2 9.4 72 1-76 22-93 (95)
145 1oqy_A HHR23A, UV excision rep 97.9 3.7E-06 1.3E-10 79.5 1.7 41 151-194 323-363 (368)
146 3uf8_A Ubiquitin-like protein 97.8 4.7E-05 1.6E-09 66.3 8.2 73 2-78 23-95 (209)
147 3e46_A Ubiquitin-conjugating e 97.7 4.1E-05 1.4E-09 68.9 5.4 43 148-193 210-252 (253)
148 2bps_A YUKD protein; ubiquitin 97.6 9.5E-05 3.3E-09 55.6 6.3 71 2-72 6-80 (81)
149 2al3_A TUG long isoform; TUG U 97.6 0.00029 9.9E-09 54.0 8.8 73 1-76 10-82 (90)
150 2kc2_A Talin-1, F1; FERM, adhe 97.6 9.4E-05 3.2E-09 60.2 6.4 67 3-72 14-119 (128)
151 3ix6_A TS, tsase, thymidylate 97.6 9.7E-06 3.3E-10 76.3 0.0 73 2-78 23-95 (360)
152 3qx1_A FAS-associated factor 1 97.3 0.00085 2.9E-08 49.9 8.1 68 2-73 9-81 (84)
153 4da1_A Protein phosphatase 1K, 97.3 3.6E-05 1.2E-09 72.4 0.0 73 2-78 32-104 (389)
154 2dzk_A UBX domain-containing p 97.2 0.0035 1.2E-07 49.1 11.0 71 2-75 15-90 (109)
155 1wgl_A TOLL-interacting protei 96.8 0.0018 6.1E-08 45.7 4.7 43 152-197 8-52 (59)
156 1wj4_A KIAA0794 protein; UBX d 96.5 0.0071 2.4E-07 48.5 7.3 69 2-74 45-118 (124)
157 3ihp_A Ubiquitin carboxyl-term 96.4 0.0024 8.2E-08 66.1 4.7 40 151-193 718-757 (854)
158 2cr5_A Reproduction 8; UBX dom 96.2 0.037 1.3E-06 43.1 9.9 69 2-74 25-97 (109)
159 2dhy_A CUE domain-containing p 96.2 0.013 4.3E-07 42.4 6.6 44 149-193 14-57 (67)
160 2pwq_A Ubiquitin conjugating e 96.2 0.00078 2.7E-08 59.1 0.0 41 152-195 176-216 (216)
161 1otr_A Protein CUE2; protein-p 96.1 0.0096 3.3E-07 40.5 5.2 39 153-194 4-44 (49)
162 1s3s_G P47 protein; AAA ATPase 95.9 0.032 1.1E-06 44.7 8.3 66 2-69 54-122 (127)
163 2di0_A Activating signal coint 95.9 0.027 9.1E-07 41.2 6.9 48 148-198 8-57 (71)
164 2cp9_A EF-TS, EF-TSMT, elongat 95.4 0.025 8.4E-07 40.6 5.1 37 154-193 10-47 (64)
165 2l32_A Small archaeal modifier 95.2 0.065 2.2E-06 39.0 7.1 60 1-73 1-60 (74)
166 4e71_A Plexin-B2, MM1; transme 95.0 0.16 5.5E-06 40.1 9.1 64 10-74 23-109 (111)
167 2r2o_A Plexin-B1; effector dom 94.4 0.21 7.3E-06 40.8 8.8 65 11-76 41-129 (138)
168 2daj_A KIAA0977 protein, COBL- 94.1 0.28 9.5E-06 37.1 8.1 70 2-77 12-84 (91)
169 1ryj_A Unknown; beta/alpha pro 93.9 0.36 1.2E-05 34.3 8.3 61 1-74 5-65 (70)
170 1q02_A Sequestosome 1; helical 93.5 0.045 1.5E-06 37.5 2.7 40 150-192 7-48 (52)
171 4a3p_A Ubiquitin carboxyl-term 93.5 0.25 8.7E-06 42.7 8.2 61 13-76 142-209 (217)
172 3h6n_A Plexin-D1; structural g 93.3 0.52 1.8E-05 38.0 9.0 65 10-75 16-104 (127)
173 3ihp_A Ubiquitin carboxyl-term 92.8 0.073 2.5E-06 55.0 4.3 38 153-193 652-690 (854)
174 4e74_A Plexin-A4; RBD, structu 92.8 0.41 1.4E-05 38.1 7.7 63 12-75 28-114 (117)
175 3rpf_C Molybdopterin convertin 92.4 0.45 1.5E-05 33.9 7.0 65 1-73 1-68 (74)
176 3jyu_A Ubiquitin carboxyl-term 92.3 0.57 1.9E-05 40.9 8.8 61 13-76 154-221 (231)
177 4dbg_B Ring finger protein 31; 92.2 0.11 3.8E-06 43.5 3.8 39 152-192 101-139 (162)
178 1vjk_A Molybdopterin convertin 91.2 1.8 6.1E-05 32.4 9.4 68 1-73 10-92 (98)
179 3ivf_A Talin-1; FERM domain, c 89.7 1.2 4.1E-05 40.9 8.7 70 3-73 6-82 (371)
180 1tte_A Ubiquitin-conjugating e 88.6 0.49 1.7E-05 41.1 4.9 27 154-183 170-196 (215)
181 1oey_A P67-PHOX, neutrophil cy 88.3 1 3.4E-05 33.7 5.8 46 1-51 6-51 (83)
182 1ufz_A Hypothetical protein BA 87.2 1.2 4.2E-05 33.2 5.6 42 152-193 33-74 (83)
183 1ixs_A Holliday junction DNA h 87.1 0.63 2.2E-05 32.7 3.8 28 150-180 14-41 (62)
184 3kuz_A Plexin-C1; structural g 86.7 1.4 4.6E-05 35.5 6.0 62 11-73 39-124 (126)
185 1tyg_B YJBS; alpha beta barrel 84.8 1.6 5.6E-05 32.6 5.3 57 8-74 25-82 (87)
186 3ig3_A Plxna3 protein; plexin 84.6 4.1 0.00014 40.7 9.5 65 11-76 247-335 (627)
187 1aip_C EF-TS, elongation facto 84.1 1.3 4.4E-05 38.2 5.1 37 154-193 4-41 (196)
188 1p3q_Q VPS9P, vacuolar protein 83.8 0.5 1.7E-05 32.6 1.9 42 151-193 10-51 (54)
189 2juo_A GA-binding protein alph 83.7 3.3 0.00011 31.2 6.4 59 15-76 7-65 (89)
190 1xb2_B EF-TS, elongation facto 83.6 1.3 4.4E-05 40.4 5.1 36 154-192 5-41 (291)
191 4dbg_B Ring finger protein 31; 83.4 0.94 3.2E-05 37.8 3.8 81 165-259 72-153 (162)
192 3dwg_C 9.5 kDa culture filtrat 83.0 4.1 0.00014 29.8 6.9 72 1-74 1-88 (93)
193 3po0_A Small archaeal modifier 82.3 3.5 0.00012 29.9 6.3 56 11-73 18-83 (89)
194 2kl0_A Putative thiamin biosyn 82.1 2.2 7.5E-05 30.6 4.9 60 1-74 1-60 (73)
195 1f0z_A THis protein; ubiquitin 81.3 2.1 7E-05 29.7 4.4 61 1-74 1-61 (66)
196 2kmm_A Guanosine-3',5'-BIS(dip 81.2 4.1 0.00014 28.1 6.1 62 1-74 1-62 (73)
197 1ef1_A Moesin; membrane, FERM 81.1 7.7 0.00026 34.0 9.2 72 1-76 2-79 (294)
198 1tr8_A Conserved protein (MTH1 80.8 2.1 7.3E-05 33.0 4.7 36 154-192 66-102 (102)
199 1h4r_A Merlin; FERM, neurofibr 80.1 9.6 0.00033 33.8 9.6 71 2-76 24-99 (314)
200 3onh_A Ubiquitin-activating en 80.0 3.6 0.00012 33.1 5.9 57 14-74 9-78 (127)
201 3hm6_X Plexin-B1; structural g 79.9 6.2 0.00021 39.5 8.8 63 12-75 275-361 (644)
202 2q5w_D Molybdopterin convertin 78.7 3.3 0.00011 29.1 4.9 54 11-73 16-71 (77)
203 1y8x_B Ubiquitin-activating en 77.8 4.7 0.00016 30.8 5.8 59 12-73 6-82 (98)
204 4g3o_A E3 ubiquitin-protein li 76.4 6.8 0.00023 27.3 5.7 45 150-196 14-58 (58)
205 2k5p_A THis protein, thiamine- 76.1 3.5 0.00012 29.9 4.5 61 1-74 1-64 (78)
206 1wgk_A Riken cDNA 2900073H19 p 75.9 3.2 0.00011 32.4 4.5 69 1-74 12-103 (114)
207 1ip9_A BEM1 protein; ubiquitin 75.7 5.9 0.0002 29.7 5.6 43 3-50 13-57 (85)
208 1v92_A NSFL1 cofactor P47; 3-h 75.6 6.1 0.00021 25.2 5.1 38 153-192 5-42 (46)
209 1wgr_A Growth factor receptor- 75.1 10 0.00035 29.0 7.1 71 3-75 12-92 (100)
210 2qjl_A URM1, ubiquitin-related 75.0 5.6 0.00019 29.7 5.5 35 1-35 2-46 (99)
211 3ivf_A Talin-1; FERM domain, c 74.5 14 0.00049 33.6 9.2 71 2-74 87-166 (371)
212 2k9x_A Tburm1, uncharacterized 74.1 1 3.5E-05 35.1 1.2 69 1-74 5-97 (110)
213 1vd2_A Protein kinase C, IOTA 73.9 12 0.00043 27.9 7.1 46 3-51 7-54 (89)
214 2dal_A Protein KIAA0794; FAS a 71.8 8.1 0.00028 26.7 5.3 41 151-193 13-53 (62)
215 3qij_A Protein 4.1; cytoskelet 71.7 19 0.00064 32.0 9.1 70 1-72 18-92 (296)
216 2l52_A Methanosarcina acetivor 69.7 17 0.00057 27.1 7.1 69 1-73 4-93 (99)
217 2i1j_A Moesin; FERM, coiled-co 69.7 16 0.00054 36.0 8.8 73 1-77 5-83 (575)
218 2cu3_A Unknown function protei 68.9 8.6 0.0003 26.3 4.9 56 8-74 4-59 (64)
219 4eut_A Serine/threonine-protei 66.4 24 0.00082 31.7 8.8 53 11-66 322-376 (396)
220 3e7l_A Transcriptional regulat 66.1 7.6 0.00026 26.4 4.2 39 146-192 5-43 (63)
221 2kvr_A Ubiquitin carboxyl-term 65.3 5.8 0.0002 31.6 3.9 32 14-48 59-90 (130)
222 2inc_C TOUB protein; DIIRON, 4 63.4 32 0.0011 25.6 7.2 62 13-74 15-81 (83)
223 2eel_A Cell death activator CI 60.9 45 0.0015 25.1 7.9 50 21-76 28-79 (91)
224 2ejs_A Autocrine motility fact 59.5 27 0.00091 24.2 5.9 46 150-197 10-55 (58)
225 1fm0_D Molybdopterin convertin 59.3 38 0.0013 23.5 7.1 56 12-73 18-75 (81)
226 2ekf_A Ancient ubiquitous prot 58.6 38 0.0013 23.7 6.6 46 150-197 10-55 (61)
227 3ge3_C Toluene-4-monooxygenase 57.7 39 0.0013 25.1 6.9 62 13-74 17-82 (84)
228 2g1e_A Hypothetical protein TA 55.1 39 0.0013 23.9 6.6 59 14-73 18-84 (90)
229 2c7h_A RBBP6, retinoblastoma-b 54.0 24 0.00081 26.4 5.2 33 3-35 9-43 (86)
230 1rws_A Hypothetical protein PF 53.6 5.3 0.00018 28.5 1.6 48 14-73 24-71 (77)
231 2dzl_A Protein FAM100B; UBA-li 53.2 33 0.0011 24.0 5.7 41 155-197 19-60 (66)
232 2dam_A ETEA protein; KIAA0887, 53.0 49 0.0017 23.1 6.6 42 151-193 16-57 (67)
233 1vdl_A Ubiquitin carboxyl-term 50.0 59 0.002 23.7 6.6 40 153-193 24-63 (80)
234 2qho_B E3 ubiquitin-protein li 49.4 45 0.0015 22.4 5.4 38 154-194 10-49 (53)
235 3qa8_A MGC80376 protein; kinas 49.3 35 0.0012 34.2 7.2 50 10-62 321-371 (676)
236 1cuk_A RUVA protein; DNA repai 49.2 25 0.00085 29.9 5.3 26 152-180 159-184 (203)
237 3hvz_A Uncharacterized protein 47.3 76 0.0026 22.7 7.1 63 2-76 7-69 (78)
238 1g2h_A Transcriptional regulat 47.1 8.9 0.0003 26.0 1.8 24 168-192 21-44 (61)
239 2kna_A Baculoviral IAP repeat- 46.2 15 0.00051 28.1 3.2 35 156-193 30-71 (104)
240 2ns5_A Partitioning-defective 45.4 90 0.0031 23.1 8.6 72 1-74 3-81 (85)
241 1umq_A Photosynthetic apparatu 43.4 13 0.00044 27.2 2.3 25 168-192 41-65 (81)
242 2ztd_A Holliday junction ATP-d 43.1 38 0.0013 29.1 5.6 25 153-180 164-188 (212)
243 2hj1_A Hypothetical protein; s 43.0 34 0.0012 25.8 4.7 59 11-74 26-84 (97)
244 3au4_A Myosin-X; protein-prote 41.1 58 0.002 31.3 7.2 45 1-48 217-263 (555)
245 2zjd_A Microtubule-associated 40.9 1.1E+02 0.0038 24.2 7.7 58 16-76 58-120 (130)
246 1wgy_A RAP guanine nucleotide 37.1 1.4E+02 0.0047 22.9 7.9 65 8-75 17-86 (104)
247 4fp9_B Mterf domain-containing 37.1 25 0.00087 32.2 3.7 29 151-182 44-72 (335)
248 3h9d_A ATG8, microtubule-assoc 36.9 1E+02 0.0035 24.0 6.8 58 16-76 53-114 (119)
249 3m95_A Autophagy related prote 36.7 1.1E+02 0.0038 24.0 7.0 58 16-76 58-119 (125)
250 3e21_A HFAF1, FAS-associated f 36.6 51 0.0017 21.5 4.1 36 152-189 4-40 (45)
251 3rui_B Autophagy-related prote 34.5 1.5E+02 0.0051 23.0 7.4 58 16-76 52-113 (118)
252 3lxf_A Ferredoxin; iron, iron- 34.1 45 0.0015 24.8 4.1 28 2-29 2-29 (104)
253 2ylm_A Ubiquitin carboxyl-term 33.6 28 0.00097 33.7 3.6 31 14-47 39-69 (530)
254 4gdk_A Ubiquitin-like protein 33.1 86 0.0029 23.2 5.5 60 14-76 23-86 (91)
255 1eto_A FIS, factor for inversi 32.8 23 0.0008 26.5 2.3 25 168-192 58-82 (98)
256 1eo6_A GATE-16, golgi-associat 32.7 1.2E+02 0.0042 23.3 6.6 58 16-76 50-111 (117)
257 2r2q_A Gamma-aminobutyric acid 32.5 1.1E+02 0.0038 23.2 6.2 57 16-75 49-109 (110)
258 3r8s_T 50S ribosomal protein L 31.8 98 0.0033 23.1 5.6 41 10-53 27-68 (93)
259 4gmv_A RAS-associated and plec 31.7 1.7E+02 0.006 25.9 8.3 69 3-73 34-112 (281)
260 1ixr_A Holliday junction DNA h 31.0 10 0.00035 32.1 0.0 26 153-181 146-171 (191)
261 1v8c_A MOAD related protein; r 30.5 1.4E+02 0.0049 24.3 7.0 56 14-73 17-81 (168)
262 1ntc_A Protein (nitrogen regul 29.8 19 0.00066 26.2 1.4 25 168-192 51-75 (91)
263 3hk0_A Growth factor receptor- 29.7 1.9E+02 0.0065 25.3 8.1 68 3-73 11-87 (256)
264 3u52_E Phenol hydroxylase comp 29.7 1.7E+02 0.0058 23.0 6.8 61 13-73 40-107 (119)
265 4a6q_A Histone deacetylase com 29.6 1.8E+02 0.0063 23.5 7.3 63 13-77 56-140 (143)
266 2nvu_B Maltose binding protein 29.5 79 0.0027 31.7 6.3 60 13-73 714-789 (805)
267 1f2r_I Inhibitor of caspase-ac 29.4 84 0.0029 24.0 4.9 50 21-76 37-90 (100)
268 2hjj_A Hypothetical protein YK 29.1 30 0.001 25.8 2.2 63 164-240 8-76 (87)
269 3pvl_A Myosin VIIA isoform 1; 28.7 1.2E+02 0.004 30.2 7.2 46 1-48 264-309 (655)
270 1n62_A Carbon monoxide dehydro 28.7 42 0.0015 27.6 3.4 27 2-29 5-31 (166)
271 2ylm_A Ubiquitin carboxyl-term 28.7 51 0.0017 31.9 4.5 58 15-75 151-217 (530)
272 1t3q_A Quinoline 2-oxidoreduct 27.9 44 0.0015 27.3 3.4 28 1-29 10-37 (168)
273 3bq3_A Defective in cullin ned 27.7 86 0.0029 27.8 5.5 41 151-193 13-53 (270)
274 3hrd_D Nicotinate dehydrogenas 27.5 44 0.0015 27.4 3.3 27 1-28 4-30 (160)
275 3k6g_A Telomeric repeat-bindin 26.8 97 0.0033 23.9 4.8 37 156-195 16-53 (111)
276 1q1o_A Cell division control p 26.6 84 0.0029 23.9 4.4 26 10-35 22-47 (98)
277 3w1s_C Ubiquitin-like protein 26.3 2E+02 0.0067 21.3 7.2 58 14-76 26-86 (91)
278 3kvh_A Protein syndesmos; NUDT 26.0 71 0.0024 27.6 4.4 47 147-195 160-206 (214)
279 1ffv_A CUTS, iron-sulfur prote 25.1 54 0.0018 26.9 3.4 27 2-29 5-31 (163)
280 3kxe_C Antitoxin protein PARD- 24.5 67 0.0023 23.7 3.5 42 148-191 9-51 (88)
281 1rm6_C 4-hydroxybenzoyl-COA re 23.7 63 0.0021 26.3 3.5 27 3-30 5-31 (161)
282 1p2x_A RNG2 protein, RAS GTPas 23.7 48 0.0017 26.9 2.8 57 185-241 14-90 (159)
283 3t6p_A Baculoviral IAP repeat- 23.0 54 0.0019 30.0 3.3 36 155-193 121-163 (345)
284 2bt6_A Adrenodoxin 1; rutheniu 23.0 70 0.0024 23.6 3.5 27 2-28 8-34 (108)
285 3tve_T 50S ribosomal protein L 22.7 1.3E+02 0.0045 22.3 4.9 40 10-52 21-61 (92)
286 2kmc_A Fermitin family homolog 22.7 2.6E+02 0.0088 21.3 9.6 73 2-75 21-99 (102)
287 3fe3_A MAP/microtubule affinit 22.5 1E+02 0.0036 26.8 5.0 37 153-192 289-325 (328)
288 2wlb_A ETP1-FD, electron trans 21.4 1E+02 0.0034 22.4 4.0 28 2-29 5-32 (103)
289 3tca_A Amyloid beta A4 precurs 21.2 1.8E+02 0.0061 24.6 6.2 33 3-35 37-69 (291)
290 2lva_A Ubiquitin carboxyl-term 26.3 21 0.00071 28.5 0.0 39 154-193 19-57 (129)
291 3avx_A Elongation factor TS, e 20.7 11 0.00038 40.7 -2.1 36 156-193 8-43 (1289)
292 2jx5_A GLUB(S27A); ubiquitin, 20.6 2.1E+02 0.0073 19.6 6.6 51 1-59 1-51 (69)
293 1uwm_A Ferredoxin VI, FDVI; el 20.2 1.2E+02 0.0042 22.1 4.3 28 1-28 1-28 (106)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=6.8e-38 Score=296.67 Aligned_cols=194 Identities=34% Similarity=0.582 Sum_probs=129.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|++|.|+|++++||.+||++|+++.|+..+++++|||||+||+|+|+++|++|||++|++|++|+.+.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999432111899999999999999999999999999999997777776654
Q ss_pred CCCCCCCC-CCCCCCC--CCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCc-cccCCCCCCccccccccCCCCcc
Q 024466 81 GSAGASSA-QPAHTTP--PTTAPSSNST--PPQEAS--VPPPAPTPSIPASNVTSN-VTAANANSDTYGQAASNLVAGND 152 (267)
Q Consensus 81 ~~~~s~~~-~~p~~~~--p~~a~~~~~~--p~~~p~--~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~a~s~l~~g~~ 152 (267)
+..++++. .+.+.+. +...+.+.+. ++..++ .+.+..++..+++|+... ..........++.+.|+|++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~l~~g~~ 167 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSE 167 (368)
T ss_dssp SCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCSSSSCCCCCSCSCCCCSSTTCSCCCSCSCCCSCCCCCCCTTTCCTTT
T ss_pred CCCCCCcccCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCcccccccccccccccccccccccCCcc
Confidence 43121111 1111110 0000000000 000000 000000011011111000 00111112335667899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITS 198 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~ 198 (267)
+|++|++|++|| |+|++|++|||++|||+|||||||++| |++
T Consensus 168 ~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~g-ip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTG-IPG 209 (368)
T ss_dssp HHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTS-STT
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC-CCc
Confidence 999999999999 999999999999999999999999997 443
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.8e-20 Score=146.82 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 3
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=6.9e-19 Score=135.78 Aligned_cols=77 Identities=42% Similarity=0.714 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~---~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|+.+.++|++++||.+||++|++. .| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999775
Q ss_pred CCC
Q 024466 78 KTL 80 (267)
Q Consensus 78 k~~ 80 (267)
+++
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 4
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=4.2e-19 Score=135.16 Aligned_cols=80 Identities=38% Similarity=0.528 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+++++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999887755
Q ss_pred CCC
Q 024466 81 GSA 83 (267)
Q Consensus 81 ~~~ 83 (267)
...
T Consensus 78 ~~~ 80 (88)
T 4fbj_B 78 GLR 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=4.3e-19 Score=134.76 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++||| +|++|+|+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999876543
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=130.29 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+++++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999764
No 7
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=1.4e-18 Score=130.06 Aligned_cols=76 Identities=38% Similarity=0.698 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~---~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+.+|+.+.++|++++||.+||++|++. .| +|+++|||+|+|+.|+|+++|++|||++|++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 899999999999999999999999999999999999876
Q ss_pred CC
Q 024466 78 KT 79 (267)
Q Consensus 78 k~ 79 (267)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 8
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.3e-18 Score=131.90 Aligned_cols=72 Identities=35% Similarity=0.531 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV-LKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKi-L~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 9
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=2.2e-18 Score=132.07 Aligned_cols=77 Identities=39% Similarity=0.558 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 10
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=9.8e-19 Score=136.91 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCccchhhcCC-CCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEI--RVQPSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~I--eVd~s~TV~dLK~kI-~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gI-kegstIvv~v~k 76 (267)
|+|+||+++|+.|.+ +|++++||.+||++| ++..| +|+++|||||+||+|+|+.+|++||| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 024466 77 S 77 (267)
Q Consensus 77 ~ 77 (267)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.6e-19 Score=134.39 Aligned_cols=74 Identities=30% Similarity=0.519 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCccchhhcCC-CCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd--~s~TV~dLK~kI-~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gI-kegstIvv~v~k 76 (267)
|+|+||+++|+++.++|+ +++||.+||++| ++..| +|+++|||||+||+|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 98888 99999999999999999999999999 699999999875
Q ss_pred C
Q 024466 77 S 77 (267)
Q Consensus 77 ~ 77 (267)
.
T Consensus 79 ~ 79 (87)
T 2lxa_A 79 N 79 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=2.5e-18 Score=131.18 Aligned_cols=74 Identities=41% Similarity=0.623 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+++++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998753
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=2.6e-18 Score=133.41 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|+|+||++.|+++.+++++++||++||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|++.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.75 E-value=7.8e-18 Score=122.50 Aligned_cols=74 Identities=39% Similarity=0.583 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 15
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=7.9e-18 Score=132.26 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+ +.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 78999999885 79999999999999999999999 99999999999999999999999999999999999876554
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=4.8e-18 Score=127.70 Aligned_cols=75 Identities=39% Similarity=0.564 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987653
No 17
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.6e-18 Score=124.58 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHF-EIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~-~Ie-Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+.+ .++ |++++||.+||++|++..| +|+++|||+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999885 899 9999999999999999999 99999999999999999999999999999999999875
No 18
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.74 E-value=1.4e-17 Score=121.19 Aligned_cols=75 Identities=40% Similarity=0.583 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987643
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.6e-18 Score=130.29 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 20
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.9e-18 Score=134.17 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+||++.|+++.++|++++||++||++|+++.| +|+++|||+|+||+|+|+.+|++|||+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.9e-17 Score=125.15 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=71.8
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKG-SHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~g-k~~~I-eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++| +.+.+ +|++++||.+||++|++..| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 024466 79 T 79 (267)
Q Consensus 79 ~ 79 (267)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=9.6e-18 Score=125.09 Aligned_cols=76 Identities=39% Similarity=0.566 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+.+.++|++++||.+||++|++..+ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 23
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.4e-18 Score=132.34 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999977554
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=123.64 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+++++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999864
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=123.80 Aligned_cols=76 Identities=39% Similarity=0.554 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..+ +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987654
No 26
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.5e-17 Score=127.56 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=70.5
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCccchhhc--CCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ--GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk--~~~IeVd~s~TV~dLK~kI~~~~--g~d~ip~~~QrLIy~GKiL~D~~tLsd~--gIkegstIvv~v 74 (267)
|+|+||+.+|+ .+.+++++++||.+||++|++.. + +++++|||||+||+|+|+.+|++| +|+++++||+++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 78999999988 67788889999999999999998 7 999999999999999999999999 999999999998
Q ss_pred ecCCC
Q 024466 75 SKSKT 79 (267)
Q Consensus 75 ~k~k~ 79 (267)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 27
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.38 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++||| +|++|+++++
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999874
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.73 E-value=9.6e-18 Score=124.17 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+.+|++|+|++|++|+++++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987643
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=127.67 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+++|++|||++|++|+|+++.+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999876543
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.5e-17 Score=123.87 Aligned_cols=76 Identities=28% Similarity=0.435 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+++|++|+|+++++|+++++....
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 31
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=125.82 Aligned_cols=75 Identities=37% Similarity=0.596 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+++++.++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987654
No 32
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=127.13 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCc-cchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~-~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+.+.++|++++||.+||++|++.. +++|||+|+||.|+|+ ++|++|||++|++|+|++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999998863 7899999999999999 99999999999999999877554
Q ss_pred C
Q 024466 80 L 80 (267)
Q Consensus 80 ~ 80 (267)
+
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=128.65 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=69.5
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCc-cchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKG----SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~g----k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~-~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+..+ +.+.++|++++||.+||++|+++.| +++++|||+|+||.|+|+ ++|++|||++|++|+|+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999988 6999999999999999886
Q ss_pred cCCC
Q 024466 76 KSKT 79 (267)
Q Consensus 76 k~k~ 79 (267)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=3e-17 Score=126.85 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCc-cchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~-~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+| ++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+ ++|++|||++|++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.72 E-value=3.6e-17 Score=119.81 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+ +|+.+.+++++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 899999999999999999999999999 9999999999999999999999999999999998864
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.5e-17 Score=131.89 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CccchhhcCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---------------GQQLLIHNGKVLK-DETTLADNKV 64 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~---------------~~QrLIy~GKiL~-D~~tLsd~gI 64 (267)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 666 4679999999996 5699999999
Q ss_pred CCCCEEEEEeecCCC
Q 024466 65 SEDGFLVVMLSKSKT 79 (267)
Q Consensus 65 kegstIvv~v~k~k~ 79 (267)
++|++|+++.+.+..
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999987664
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=6.5e-17 Score=124.93 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987654
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=2.9e-17 Score=127.31 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++|+.+.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987653
No 39
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.7e-17 Score=128.00 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=64.8
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 2 KLTVKTLK----GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 2 kItVKtl~----gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.|.|+..+ ++++.++|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|++|++|+||+.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 36677776 67899999999999999999999999 9999999999999999999999999999999965553
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=3e-17 Score=126.18 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+. |+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 89999999999999999999999999 99999999999999999999999999999999999876553
No 41
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=8.1e-17 Score=125.87 Aligned_cols=74 Identities=28% Similarity=0.358 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+. |+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987644
No 42
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.4e-16 Score=128.39 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=64.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH------hCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCE--EEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV------QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGF--LVV 72 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~------~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegst--Ivv 72 (267)
|+|+||+++|++++++|++++||.+||++|++. .+.. +++++|||||+||+|+|+.+|++|+|+.+++ |||
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p-~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV-SSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC-CCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC-CChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 789999999999999999999999999999994 3411 3699999999999999999999999988765 555
Q ss_pred Eeec
Q 024466 73 MLSK 76 (267)
Q Consensus 73 ~v~k 76 (267)
+++.
T Consensus 96 vlr~ 99 (116)
T 1wgh_A 96 VARE 99 (116)
T ss_dssp EECS
T ss_pred EccC
Confidence 5543
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.5e-17 Score=126.32 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+ +.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999876554
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=8.4e-17 Score=127.79 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|+|++|++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999997653
No 45
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.52 E-value=1.6e-18 Score=127.12 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987653
No 46
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=122.94 Aligned_cols=73 Identities=25% Similarity=0.286 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+ |+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7899998 89999999999999999999999999 9999999999999999999999999999999999987653
No 47
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=129.89 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+. |+.+.++|++++||.+||++|++..| +++++|||+|+||+|+|+++|++|||++|++|+|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999887553
No 48
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=129.41 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCccchhhcCCCCCCE--E
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED------VQGKDNY--PCGQQLLIHNGKVLKDETTLADNKVSEDGF--L 70 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~------~~g~d~i--p~~~QrLIy~GKiL~D~~tLsd~gIkegst--I 70 (267)
|+|+||+++|++++++|++++||.+||++|++ +.| + ++++|||||+||+|+|+++|++|+|+++++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999999 445 5 589999999999999999999999998885 4
Q ss_pred EEEeecC
Q 024466 71 VVMLSKS 77 (267)
Q Consensus 71 vv~v~k~ 77 (267)
+|+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 5555443
No 49
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.68 E-value=2.5e-16 Score=134.05 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+++++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 50
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.6e-16 Score=124.09 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=68.1
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCccchhhcCCC
Q 024466 1 MKLTVKTLKG---SHFEIRVQ--------P-SDTVMAVKKNIEDVQ--GKDNYPCGQ-QLLIHNGKVLKDETTLADNKVS 65 (267)
Q Consensus 1 MkItVKtl~g---k~~~IeVd--------~-s~TV~dLK~kI~~~~--g~d~ip~~~-QrLIy~GKiL~D~~tLsd~gIk 65 (267)
|+|+||+.++ +++.|+++ + ++||.+||++|++.. | +++++ |||+|+||.|+|+++|++|||+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999998 88999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEeecC
Q 024466 66 EDGFLVVMLSKS 77 (267)
Q Consensus 66 egstIvv~v~k~ 77 (267)
+|++|+|+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 51
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.5e-16 Score=123.52 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~-~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||. .|+.+ .++|++++||.+||++|++..| +|+++|||+|+||.|+|+ +|++|||++|++|+||.+..
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899994 78899 6999999999999999999999 999999999999999999 99999999999999987543
No 52
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=123.04 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999987653
No 53
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=3.7e-16 Score=129.93 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 54
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.65 E-value=4.6e-16 Score=118.98 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~I-eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI---y~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||. .|+.+.| +|++++||.+||++|++..| +|+++|||+ |+||.|+|+.+|++|+|++|++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 7899999 99999999999999999999 999999999 99999999999999999999999998754
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=7e-16 Score=123.19 Aligned_cols=76 Identities=36% Similarity=0.507 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
++|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||++|++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987654
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=6e-16 Score=118.13 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-ccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPS-----DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD-ETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s-----~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D-~~tLsd~gIkegstIvv~v 74 (267)
|+|+||+ .|+.+.++++++ +||.+||++|++..| +|+++|||+|+||.|+| +.+|++|||++|++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999987
Q ss_pred ecC
Q 024466 75 SKS 77 (267)
Q Consensus 75 ~k~ 77 (267)
++.
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 553
No 57
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=8.9e-17 Score=125.85 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+ +|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 889999999999999999999999999 99999999999999999999999999999999998764
No 58
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=4.2e-16 Score=127.25 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=66.6
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCC--CCCCC--CCeEEEeCCeecCCccchhhcCCCCC------CE
Q 024466 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGK--DNYPC--GQQLLIHNGKVLKDETTLADNKVSED------GF 69 (267)
Q Consensus 1 MkItVKtl~gk~~-~IeVd~s~TV~dLK~kI~~~~g~--d~ip~--~~QrLIy~GKiL~D~~tLsd~gIkeg------st 69 (267)
|+|+||+++|+.+ .+++++++||.+||++|++..+. ..+|+ ++|||||+||+|+|+++|++|+|++| .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 69999999999999999654321 11665 89999999999999999999999998 46
Q ss_pred EEEEeecCCC
Q 024466 70 LVVMLSKSKT 79 (267)
Q Consensus 70 Ivv~v~k~k~ 79 (267)
++|+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 7777776543
No 59
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=123.91 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=64.0
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCccchhhc--CCCCCCEEEEE
Q 024466 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ-GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk--~~~IeVd~s~TV~dLK~kI~~~~-g~d~ip~~~QrLIy~GKiL~D~~tLsd~--gIkegstIvv~ 73 (267)
|+|+||+++|+ .+.++|++++||.+||++|+++. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999988 67899999999999999999974 41 456999999999999999999999 99999999874
No 60
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.64 E-value=1.4e-16 Score=109.80 Aligned_cols=48 Identities=48% Similarity=0.859 Sum_probs=45.4
Q ss_pred cCCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcc
Q 024466 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRIT 197 (267)
Q Consensus 146 ~l~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~ 197 (267)
+|++|+++++.|++|++|| |+|++|++|||+++||+|||+|||++| +|
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~g-ip 48 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTG-IP 48 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHC-CC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhC-CC
Confidence 4789999999999999999 999999999999999999999999997 54
No 61
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=6.2e-16 Score=122.43 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=71.7
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTL---KGSHFEIRVQP-SDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl---~gk~~~IeVd~-s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+. +|+.+.++|++ ++||.+||++|++..| +|+++|||+|+|++|+|+.+|++|||++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 024466 77 SKT 79 (267)
Q Consensus 77 ~k~ 79 (267)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=1.1e-15 Score=127.20 Aligned_cols=72 Identities=29% Similarity=0.423 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-H-NGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI-y-~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+ | +|+.|+|+.+|++|||++|++|+++++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 79999999999999999999999999999999999 999999999 9 799999999999999999999999986
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=129.20 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|||+++++|+++++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=8.1e-16 Score=133.48 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 65
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=1.2e-15 Score=115.50 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=66.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
+.+++++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 457778999999999999999999999999999 9999999999999999999999999999999998874
No 66
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.62 E-value=6.7e-16 Score=124.71 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCC-------CCCEEEE
Q 024466 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVS-------EDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIk-------egstIvv 72 (267)
|.++|+...++ ++.++|++++||.+||++|+++.| +|+++|||||+||.|+|+++|++|||+ .+++|++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77777777775 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred Eee
Q 024466 73 MLS 75 (267)
Q Consensus 73 ~v~ 75 (267)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 987
No 67
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=7.2e-16 Score=119.19 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+|| ..|+++.++|++++||.+||++|++..| +|+++|||+|+||.| |+.+|++|+|+++++|+|+.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 5788999999999999999999999999 999999999999999 5569999999999999998754
No 68
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.61 E-value=1e-15 Score=123.49 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCC-------CCEEEE
Q 024466 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE-------DGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIke-------gstIvv 72 (267)
|.++|+...++ ++.+++++++||.+||++|+++.| +|+++|||||+||+|+|++||++|||++ +++|++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 77888877666 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred Eeec
Q 024466 73 MLSK 76 (267)
Q Consensus 73 ~v~k 76 (267)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9985
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.61 E-value=2e-15 Score=119.61 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=68.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCC-CCCCEEEEEeec
Q 024466 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~g--k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gI-kegstIvv~v~k 76 (267)
|+|+|++..+ .+++++|++++||.+||++|++++| +|++.|||+|+|++++|+++|++||| ++|+++++++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 6899999999999999999999999 99999999999999999999999999 599999998853
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=121.16 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=67.6
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 2 KLTVK-TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 2 kItVK-tl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
.|+|+ ...|+.+.++++++.||++||++++.+.+ +|++.|+|||+||+|+|+.||++|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 55688999999999999999999999999 9999999999999999999999999999999999987633
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=5.8e-17 Score=131.66 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=4.1e-15 Score=121.56 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999998864
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.59 E-value=6e-15 Score=120.54 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.+++++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999987653
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=125.36 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|.|+||+.+|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987653
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.57 E-value=9.6e-15 Score=116.36 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=69.2
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEE
Q 024466 1 MKLTVKTL----------KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70 (267)
Q Consensus 1 MkItVKtl----------~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstI 70 (267)
++|.|+.. +|+.+.++|++++||.+||++|++..| +|+++|||+|+|+.|+|+.+|++|+|++|++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35677764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 024466 71 VVMLSKSKT 79 (267)
Q Consensus 71 vv~v~k~k~ 79 (267)
+|+++.++.
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987654
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.57 E-value=2.9e-16 Score=131.92 Aligned_cols=77 Identities=38% Similarity=0.514 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~~ 80 (267)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++..+.+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=114.57 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=63.3
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGSHF--EI-RVQPSDTVMAVKKNIEDV-QGKDNYPCGQQLLIHN--GKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk~~--~I-eVd~s~TV~dLK~kI~~~-~g~d~ip~~~QrLIy~--GKiL~D~~tLsd~gIkegstIvv 72 (267)
|+|+||+++|+.+ .+ +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|||++|++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 89999999976 99999999999999999999875
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=111.83 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=64.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
|.+++++++|+++.|+|++++||.+||++|+++.| +|+++|||+| .|+ |+|+.+|++|+|+.|++|+++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56677789999999999999999999999999999 9999999996 566 99999999999999999998764
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.49 E-value=5.7e-14 Score=129.99 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=6e-14 Score=110.67 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCccchhhcCC
Q 024466 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-----------V----LKDETTLADNKV 64 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd-~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK-----------i----L~D~~tLsd~gI 64 (267)
|.|.||+.+|+. .|+|+ +++||.+||++|++..| +|+++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCEEEEEee
Q 024466 65 SEDGFLVVMLS 75 (267)
Q Consensus 65 kegstIvv~v~ 75 (267)
++|++|||...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998764
No 81
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.47 E-value=7.5e-14 Score=106.46 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred EEEEE--eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVK--TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-------NGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVK--tl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-------~GKiL~D~~tLsd~gIkegstIvv 72 (267)
+|.|. ..+++.+++.+++++||.+||++|+...| +|+++|||+| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 44554 33456778999999999999999999999 9999999997 589999999999999999999999
Q ss_pred EeecC
Q 024466 73 MLSKS 77 (267)
Q Consensus 73 ~v~k~ 77 (267)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 87543
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.7e-13 Score=106.43 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=62.0
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---e-cCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GK---V-LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~g--k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~--GK---i-L~D~~tLsd~gIkegstIvv 72 (267)
++|+|++..+ +.+++++++++||.+||++|+...| +|+++|||+|. |+ . ++|+++|++|||++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4788999999999999999999999 99999999998 55 3 48999999999999999998
Q ss_pred E
Q 024466 73 M 73 (267)
Q Consensus 73 ~ 73 (267)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=5.2e-13 Score=102.87 Aligned_cols=73 Identities=22% Similarity=0.175 Sum_probs=63.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G---Ki----L~D~~tLsd~gIkegstIvv 72 (267)
++|+|+...+. .+++++++++||.+||++|+...| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778876543 688999999999999999999999 999999999987 43 58999999999999999998
Q ss_pred Eeec
Q 024466 73 MLSK 76 (267)
Q Consensus 73 ~v~k 76 (267)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 7643
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=6e-13 Score=103.75 Aligned_cols=71 Identities=17% Similarity=0.047 Sum_probs=62.0
Q ss_pred EEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---e----cCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK---V----LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~g--k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK---i----L~D~~tLsd~gIkegstIvv 72 (267)
+|.|++... +.+++++++++||.+||++|+...| +|+++|||+|.|+ . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 567776433 5789999999999999999999999 9999999999883 3 58899999999999999998
Q ss_pred Eee
Q 024466 73 MLS 75 (267)
Q Consensus 73 ~v~ 75 (267)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 85
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.41 E-value=1.9e-14 Score=124.85 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+++|+++.|+|++++||.+||++|++..| +|+++|+|||+|++|+|+.+|+ ++++|+|+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999 88999999987653
No 86
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.40 E-value=3e-13 Score=100.54 Aligned_cols=46 Identities=35% Similarity=0.384 Sum_probs=42.7
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccc
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRITS 198 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~ 198 (267)
.+++++.|++|++|| |+|++|++|||+++||+|||+|||++|..++
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 456799999999999 9999999999999999999999999987665
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.40 E-value=5e-13 Score=101.07 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=63.3
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GKVLK---DETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~Ie-Vd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~--GKiL~---D~~tLsd~gIkegstIvv~v 74 (267)
|+|.||+.+|+. .++ +++++||.+||++|+++.| +++++|+|+|+ ||.|+ |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999954 577 9999999999999999999 89999999987 48874 68899999999999998765
Q ss_pred e
Q 024466 75 S 75 (267)
Q Consensus 75 ~ 75 (267)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.36 E-value=6.3e-13 Score=90.38 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
..+++.|++|++|| | +|+.+++||++++||++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 46899999999999 9 68899999999999999999999986
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.35 E-value=8.6e-13 Score=88.06 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
.|+.|++|++|| |+|++|++||++++||+++|+|||++|
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 378999999999 999999999999999999999999986
No 90
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.35 E-value=9.1e-13 Score=122.50 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI---y~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|+|+|| .+|+++.++|++++||.+||++|++..| +|+++|||| |+||.|+|+.+|++|||++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578899 5899999999999999999999999999 999999999 89999999999999999999999998654
No 91
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.34 E-value=1.9e-12 Score=90.15 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=39.7
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
+..+++.|++|++|| | +|+.|++||++++||++||||||+++
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 457899999999999 9 99999999999999999999999985
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=3.7e-12 Score=98.63 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++++||+|.|+.|.++.|+++|++.+||+|+|+....+.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 67999999999999999999999999999999999 89999999999999999999999999999999999976553
No 93
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.31 E-value=4.8e-12 Score=101.97 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=63.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G---Ki----L~D~~tLsd~gIkegstIvv 72 (267)
|+|+|+...+. .+++++++++||.+||++|+...| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999987 42 58999999999999999999
Q ss_pred Eeec
Q 024466 73 MLSK 76 (267)
Q Consensus 73 ~v~k 76 (267)
+...
T Consensus 84 vd~~ 87 (122)
T 1t0y_A 84 VDVT 87 (122)
T ss_dssp EECT
T ss_pred EeCC
Confidence 8754
No 94
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=5e-12 Score=94.10 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=40.2
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
...|++.|++|++|| | +|+.+++||+++++|+|||||||++|.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 457899999999999 9 899999999999999999999999974
No 95
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1.3e-11 Score=90.56 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|++.+|+.+.+.|.+++++..|++.++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 899999999999999999999999999999999873
No 96
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.27 E-value=3.4e-12 Score=90.85 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=39.4
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
...+++.|++|++|| | +|+.+++||+++++|+|||||||++|
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 467899999999999 9 79999999999999999999999986
No 97
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.27 E-value=3.9e-12 Score=88.81 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
..+++.|++|++|| | +|+.|++||++++||++||||||+++.
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 57899999999999 9 999999999999999999999999863
No 98
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.26 E-value=5.1e-12 Score=95.95 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc--CCccc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS--VRITS 198 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~--~~~~~ 198 (267)
.++.|++||+|| |+|++|++|||+++||++||+|||++ |.+++
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~ 73 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPP 73 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCch
Confidence 588999999999 99999999999999999999999999 76664
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=2.9e-11 Score=93.12 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+||+.+|+.+.+.|.+++++..|++.++++.| ++++.+||+|.|+.|.++.|.++|++.+||+|.|+....+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 8999999999999999999999999999999999987654
No 100
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.24 E-value=5.8e-12 Score=91.01 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRI 196 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~ 196 (267)
.+++|++|++|| |+|++|++|||+++||++||+|||+++..
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 488999999999 99999999999999999999999999653
No 101
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.24 E-value=4.8e-11 Score=89.24 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=66.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|+|+|++.+|+ .+.+.|.+++++..|++.++++.| ++++++||+|.|+.|.++.|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 899999999999999999999999 89999999999999999999999999999999986
No 102
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.23 E-value=1.1e-11 Score=80.97 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
+++++.|++|++|| |+|++|++||+++.||+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45788999999999 9999999999999999999999995
No 103
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.20 E-value=1.4e-11 Score=91.47 Aligned_cols=40 Identities=18% Similarity=0.483 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.++.|++|++|| |+|++|++|||+++||++||+|||+++.
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 488999999999 9999999999999999999999999854
No 104
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=89.35 Aligned_cols=40 Identities=35% Similarity=0.625 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
..++.|++|++|| |+|++|++|||++.||++||+|||+++
T Consensus 8 ~~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 8 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3588999999999 999999999999999999999999994
No 105
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=83.60 Aligned_cols=38 Identities=37% Similarity=0.592 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
.++.|++|++|| |+|++|++|||++ ||+|+|+|||+++
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 488999999999 9999999999999 6999999999975
No 106
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.19 E-value=1.2e-11 Score=88.35 Aligned_cols=44 Identities=27% Similarity=0.554 Sum_probs=39.3
Q ss_pred CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 148 ~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
+++++ ++.|.+|++|| |.++|+++||++..||+|||+|||+++-
T Consensus 15 ls~se-~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 15 LSPSE-RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp CCHHH-HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred hCcch-HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34455 77899999999 9999999999999999999999999943
No 107
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.19 E-value=7.2e-11 Score=91.02 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+|++.+|+.+.+.|.+++++..|+..+++..| ++++.+||+|.|+.|.++.|.++|++.+|++|+|+....
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889999999999999999999999999999999 899999999999999999999999999999999998653
No 108
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=7.9e-11 Score=92.86 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 8999999999999999999999999999999999986654
No 109
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=2.6e-11 Score=87.82 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcCC
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSVR 195 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~~ 195 (267)
++.|++|++|| |+|++|++|||++.| |+++|+|||+++.
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 56899999999 999999999999999 9999999999964
No 110
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.13 E-value=4.9e-11 Score=87.04 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=38.5
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
...|++.|++|++|| | +|+.+++||++++||+|||||||+++
T Consensus 16 e~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 16 EVRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 357899999999999 9 77788999999999999999999994
No 111
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.12 E-value=2.1e-11 Score=88.35 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcCC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSVR 195 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~~ 195 (267)
...|+.|++|++|| |+|+.|++||++++| |+++|+|||+.+.
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 34567899999999 999999999999999 9999999999953
No 112
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.11 E-value=1.4e-10 Score=92.45 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+|++.+|+.+.+.|.+++++..|++.++++.| ++++.+||+|.|+.|.++.|.++|++.+||+|.|+.....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57899999999999999999999999999999999 8999999999999999999999999999999999986543
No 113
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.9e-11 Score=87.93 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcCC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSVR 195 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~~ 195 (267)
.++.|++|++|| |+|++|++|||++.| |+|+|+|||+++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 488999999999 999999999999997 7999999999943
No 114
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.09 E-value=2.8e-10 Score=90.11 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
|+|+|++ +|+.+.+.|..++++..|++.++++.| ++++.+||+|.|+.|.++.|.++|++.+||+|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 889999999999999999999999999999999998653
No 115
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.05 E-value=6.3e-11 Score=85.73 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh-cCChHHHHHHHhcC
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAA-YNNPERAVDYLYSV 194 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAA-fnNpdRAvEYLl~~ 194 (267)
++.|++|++|| |+|++|++|||++ .+|+++|+|||+++
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 55899999999 9999999999999 48999999999994
No 116
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=87.46 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.++.|++|++|| |+|++|++|||+++||+++|+|||+++.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 588999999999 9999999999999999999999999953
No 117
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=6.9e-10 Score=85.46 Aligned_cols=72 Identities=25% Similarity=0.247 Sum_probs=61.7
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCccchhhcCCCCCCEE
Q 024466 2 KLTVKT---LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG------KV-L-KDETTLADNKVSEDGFL 70 (267)
Q Consensus 2 kItVKt---l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G------Ki-L-~D~~tLsd~gIkegstI 70 (267)
+|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||.|.+ .. | +|+++|++|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566775 4677889999999999999999999999 999999999873 22 5 67789999999999999
Q ss_pred EEEeec
Q 024466 71 VVMLSK 76 (267)
Q Consensus 71 vv~v~k 76 (267)
+|....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998744
No 118
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=4.8e-10 Score=78.53 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
.+++.|++|++|| | +++.+++||+++.+|++||||||+++
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5788999999999 9 55568999999999999999999983
No 119
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.00 E-value=2.8e-10 Score=86.56 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSV 194 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~ 194 (267)
.+++|++|++|| |+|++|++||++++| |+++|+|||+++
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 488999999999 999999999999984 999999999994
No 120
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=7.9e-10 Score=84.31 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCc
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRI 196 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~ 196 (267)
++.|++|++|| |+|++|++||++..+|+++|+|||+++..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 88999999999 99999999999999999999999999543
No 121
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.90 E-value=1.2e-09 Score=86.78 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
..+++.|++|.+|| | +|+.+++||+++++|++||||||++|-
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 35789999999999 9 789999999999999999999999863
No 122
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=88.15 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.++.|++|++|| |+|++|++||++++||++||+|||+++.
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 588999999999 9999999999999999999999999954
No 123
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.88 E-value=4.5e-10 Score=76.50 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
+.+++|++|++|| |+|.+|++||.|..+|.++|++||+++-
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999853
No 124
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.79 E-value=6e-09 Score=71.91 Aligned_cols=39 Identities=36% Similarity=0.462 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+.+..|+.||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 10 ~~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 10 NVDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp -CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3467999999999 99999999999999999999999974
No 125
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=7.8e-09 Score=71.67 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc-CCcc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-VRIT 197 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~-~~~~ 197 (267)
.|..|+.||+|| |+|++|++||+.+.||.|.|..+|+. .+.+
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~ 51 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILREFSGPS 51 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHHhcccC
Confidence 466799999999 99999999999999999999999986 4433
No 126
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=4.2e-08 Score=78.67 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=67.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEee
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~ 75 (267)
++|+|++.+|+.+.+.|..++++..|++..++..| ++.+.+||+|.|+.|.++.|.+++++.+||+|.|+..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 46888888899889999999999999999999999 8999999999999999999999999999999999874
No 127
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.69 E-value=1.5e-08 Score=81.64 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
++.+.|.+|++|| |++++|+.||+...||.|||+|||+++
T Consensus 75 ~~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4667899999999 999999999999999999999999983
No 128
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.69 E-value=2.9e-08 Score=66.57 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=38.9
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
|+.+|..|..||+|| |+|+.|++||-.|-||.+.|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999975
No 129
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.67 E-value=2.5e-08 Score=69.35 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc-CCcccc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-VRITSK 199 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~-~~~~~~ 199 (267)
+..|..|+.||+|| |+|+.|++||+.|-||.+.|-+.|+. .++++.
T Consensus 5 ~p~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~~ 51 (56)
T 2juj_A 5 PQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREFVSISSP 51 (56)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHSCCCCCS
T ss_pred CCChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHHHccCCc
Confidence 34688999999999 99999999999999999999999998 666553
No 130
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.60 E-value=3.2e-08 Score=74.16 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=57.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV---L--KDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKi---L--~D~~tLsd~gIkegstIvv~ 73 (267)
|.|.||+.+| .+.|++++++||.+||++|.+..+ ++++.+.|.++-.. | .++.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998887 778999999999999999999999 78788777554432 3 47789999999999999864
No 131
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.9e-07 Score=79.48 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
++|+|+ .+|+...+.|..++++..|++..+++.| ++.+++|++|.|+.|.++.|.+++++.+||+|.|+....+.
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 367787 4888999999999999999999999999 89999999999999999999999999999999999876554
No 132
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.50 E-value=8.6e-08 Score=83.23 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=40.0
Q ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.++++++.|++|++|| |+|++|+.||+.+.+|.++|+|||++
T Consensus 159 ~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 159 SSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4678999999999999 99999999999999999999999986
No 133
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4.2e-07 Score=78.95 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k~ 79 (267)
++|+|+ .+|+.+.+.|..++++..|++..+++.| ++...+|++|.|+.|.++.|.+++++.+||+|.|++...+.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357776 4888999999999999999999999999 89999999999999999999999999999999999866443
No 134
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.32 E-value=5.5e-07 Score=72.41 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
+.-.+.|+.|++|| |+++.|++||++..||+++|+|||+..
T Consensus 6 ~~e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 6 PSERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 44578999999999 999999999999999999999999984
No 135
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.27 E-value=5.7e-06 Score=61.95 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=64.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~-~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
.+.+|+.+...+.+.|.++.+|.+|-+..+.+.| ++.+ .++|.|.|..|+.+.++.||++.+||.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3557777777899999999999999999999999 8888 99999999999999999999999999999886
No 136
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.19 E-value=1.9e-06 Score=60.10 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=38.6
Q ss_pred CccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.|...+++|.+|| | +++..++||+...+|.++||+.|++
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456788999999999 9 9999999999999999999999998
No 137
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.19 E-value=8e-07 Score=71.73 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcC
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSV 194 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~ 194 (267)
++.|++|++|| |+++.|++|||+..| |.++|+|||+.+
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 56899999999 999999999999988 899999999983
No 138
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.19 E-value=2.1e-06 Score=67.47 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 151 NDLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 151 ~~~e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
+++++.|+.|++| | |++++|+.||..+.+|.++|++||+.|.
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5679999999999 9 9999999999999999999999999976
No 139
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.15 E-value=1.2e-05 Score=62.51 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=63.2
Q ss_pred EEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~gk-~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
+|+|+..+|+ .+.+.|..+.++..|....++..| ++.+..|++|.|..|.++.|.+++++.+||.|.|+
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 5777777784 788999999999999999999999 88899999999999999999999999999999876
No 140
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.10 E-value=3.8e-07 Score=80.20 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
|+|+| +.+|+...+.|..++.+..|++..+++.| ++++.+|++|.|+.|.++.|.+++++.+||+|.|+....+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888888999999999999999999999 8999999999999999999999999999999999986544
No 141
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.07 E-value=3.3e-06 Score=71.93 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.++.+++|++|++|| |+|+.|++|+.++..|.+.|++||+++.
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~~ 169 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSDH 169 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 355688999999999 9999999999999999999999999853
No 142
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.88 E-value=6.9e-05 Score=57.91 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCccchhhcCCC-CCCEEEEE
Q 024466 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL--KDETTLADNKVS-EDGFLVVM 73 (267)
Q Consensus 3 ItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL--~D~~tLsd~gIk-egstIvv~ 73 (267)
|.|=++ ++....+.+++++||..||++|++++| +++++|+|+|.||.| +.+..-..|--. +.+-|.++
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 344445 456788999999999999999999999 999999999999865 455556666433 33445444
No 143
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.87 E-value=1.4e-05 Score=55.41 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC-ChHHHHHHHhcCCcc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSVRIT 197 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn-NpdRAvEYLl~~~~~ 197 (267)
..-++++.|++|| |+++.|++||+...| +.+-|+|||.--+-+
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 4467899999999 999999999999988 799999999874433
No 144
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.86 E-value=9.6e-05 Score=57.17 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
+.|+|+. +|..+.+.+-.+.-...|.+..+++.| +.++..|++|.|..+.++.|-+++++.+||.|-+++.+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3577884 688888999999999999999999999 89999999999999999999999999999999999865
No 145
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.85 E-value=3.7e-06 Score=79.45 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
++.+++|++|++|| |+|++|++||++..+|.+||++||+++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45689999999999 999999999999999999999999983
No 146
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.83 E-value=4.7e-05 Score=66.31 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=66.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
+|+|++ +|+...+.+..++.+..|++..++..| ++.+++|++|.|+.+.++++..++.+.++|.|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677778999999999999999999999 8999999999999999999999999999999999876554
No 147
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.66 E-value=4.1e-05 Score=68.86 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=40.3
Q ss_pred CCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 148 ~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
..++++++.|++|++|| |+|++|+.||+....|.++|+|||++
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34678999999999999 99999999999999999999999985
No 148
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.64 E-value=9.5e-05 Score=55.61 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=58.9
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKt--l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~--~~QrLIy~GKiL~D~~tLsd~gIkegstIvv 72 (267)
+|+|.. ..++.+.+.+....||+.|++.+.+.++.+..+. ...|+.-+|.+|.+++.|+||+|++||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 5789999999999999999999999998431111 2457888999999999999999999999976
No 149
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.62 E-value=0.00029 Score=53.97 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
|.|+|-..+++...+.|.++.++.++-+..++++| +.+++-.|.|++|.|+-+..+.-.||-+|..+.++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 67899999999999999999999999999999999 78889999999999988999999999999999987654
No 150
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.62 E-value=9.4e-05 Score=60.18 Aligned_cols=67 Identities=27% Similarity=0.255 Sum_probs=55.2
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------CeE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-------------------------------------QQL 45 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~-------------------------------------~Qr 45 (267)
|+|+.++|...++.|+.+.+|.+++..|+.+.| +... .+|
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 789999999999999999999999999999999 4422 334
Q ss_pred EEe--CCeecCCccchhhcCCCCCCEEEE
Q 024466 46 LIH--NGKVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 46 LIy--~GKiL~D~~tLsd~gIkegstIvv 72 (267)
|-. .+.-|+++++|.++||.++++|.+
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 421 235678899999999999999755
No 151
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.58 E-value=9.7e-06 Score=76.33 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
.|+|++ +|+...+.|..++++..|++..++..| ++.+.+|++|.|+.|.++.|.+++++.+||+|.|+....+
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 567776 677788899999999999999999999 8999999999999999999999999999999999986543
No 152
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.35 E-value=0.00085 Score=49.90 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CccchhhcCCCCCCEEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK---DETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~---D~~tLsd~gIkegstIvv~ 73 (267)
+|-||..+|+.+.-.+..++||.+|...|.. .+ .+....+|+ |-.|.|. .+++|+++|+.++.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999888888899999999999998 55 567788887 5678883 4789999999998888764
No 153
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.29 E-value=3.6e-05 Score=72.39 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeecCC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k~k 78 (267)
.|+|+. +|....+.|..++++..|++..+++.| ++..+++++|.|+.|.++.|.+++++.+|++|.++.....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 456666 667777899999999999999999999 8999999999999999999999999999999999986544
No 154
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.24 E-value=0.0035 Score=49.10 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=59.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-ccchhhcCCCCCCEEEEEee
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--D-ETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~--D-~~tLsd~gIkegstIvv~v~ 75 (267)
+|-||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|+++|+.+...|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5889999999998899999999999999999876 555677776 5678886 3 68999999999877766543
No 155
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.76 E-value=0.0018 Score=45.75 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcc
Q 024466 152 DLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSVRIT 197 (267)
Q Consensus 152 ~~e~~I~~l~eM--G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~ 197 (267)
..|+.|+.|.+| + .+++.++.+|++..||.|+|++.|+.-+.+
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 468999999999 6 899999999999999999999999985544
No 156
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.50 E-value=0.0071 Score=48.49 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=57.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-ccchhhcCCCCCCEEEEEe
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVL--KD-ETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL--~D-~~tLsd~gIkegstIvv~v 74 (267)
+|.||..+|+.+.-.+..++||.+|...|... + .+.....|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999998888899999999999999886 5 566778886 668888 34 7899999999988887653
No 157
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.0024 Score=66.09 Aligned_cols=40 Identities=35% Similarity=0.635 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
...++.|+.|.+|| |+++++++||++..||.+||+|||++
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 44588999999999 99999999999999999999999998
No 158
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.25 E-value=0.037 Score=43.08 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CccchhhcCCCCCCEEEEEe
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--DETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~--D~~tLsd~gIkegstIvv~v 74 (267)
+|-||..+|+.+.-.+..++||.+|...|... + ......+|+ |-.|.|. .+++|+++|+.+..+|+|-.
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888888999999999999965 4 456677886 6678886 36899999999988776643
No 159
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.24 E-value=0.013 Score=42.42 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 149 ~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.++++.++.|.+|= -+.+++.++..|++.-+|.|+|++-|++
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678899999999991 2279999999999999999999999998
No 160
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.20 E-value=0.00078 Score=59.10 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
++++.|+++++|| |+|+++++||+...-|.++|+|.|++|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4589999999999 9999999999999999999999999873
No 161
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.13 E-value=0.0096 Score=40.51 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 153 LEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 153 ~e~~I~~l~eM--G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
.+..|+.|.|| . =++++|+++|+++.+|.|+|+.-|++.
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 4 589999999999999999999999985
No 162
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.91 E-value=0.032 Score=44.73 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=53.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-ccchhhcCCCCCCE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSEDGF 69 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~GKiL~D-~~tLsd~gIkegst 69 (267)
+|-||..+|+.+.-.+..++||.+|...|...... .......|+ |-.|.|.| +++|+++|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 58899999999988999999999999999986421 345667776 56888976 68999999997433
No 163
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.88 E-value=0.027 Score=41.20 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=43.3
Q ss_pred CCCccHHHHHHHHHHh--CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCccc
Q 024466 148 VAGNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSVRITS 198 (267)
Q Consensus 148 ~~g~~~e~~I~~l~eM--G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~ 198 (267)
+++.+.++.|.+|.++ - +....|.++|..-.+|+|+++..|+.+++|.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp 57 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAP 57 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCH
Confidence 4678999999999997 4 6799999999998899999999999998876
No 164
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=95.41 E-value=0.025 Score=40.56 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.|..|.++ | ....+|..||..+.+|.+.|++||-.
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4679999997 7 88999999999999999999999964
No 165
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.22 E-value=0.065 Score=39.04 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=46.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|+|+||-.......++++.+.||.+|-++ .| ++++..-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977445556899999999998765 67 8888887888999986655 2358888765
No 166
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.98 E-value=0.16 Score=40.08 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=46.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCc-------------cchhhcCCCC
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGKVLKDE-------------TTLADNKVSE 66 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy----~GKiL~D~-------------~tLsd~gIke 66 (267)
+..+.+.|-..|||.++|+||-+..-.+ .| ++++.|-+ .|++|.|. .||+.|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457777878999999999999776433 33 34556655 25677663 5899999999
Q ss_pred CCEEEEEe
Q 024466 67 DGFLVVML 74 (267)
Q Consensus 67 gstIvv~v 74 (267)
|++|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998753
No 167
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.42 E-value=0.21 Score=40.81 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=47.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCc-------------cchhhcCCCC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy----~GK-iL~D~-------------~tLsd~gIke 66 (267)
..+.+.|-..|||.++|+||-+...++ .| +++.-|-+ .|+ +|.|. .||+.|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 357788889999999999999887654 43 33445544 244 47663 4899999999
Q ss_pred CCEEEEEeec
Q 024466 67 DGFLVVMLSK 76 (267)
Q Consensus 67 gstIvv~v~k 76 (267)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999876543
No 168
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.05 E-value=0.28 Score=37.12 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCccchhhcCCCCCCEEEEEeecC
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy---~GKiL~D~~tLsd~gIkegstIvv~v~k~ 77 (267)
++.|.-...++..+.|+|..++.+|--.|+++.. +.++.-.|.- .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 4666766777888999999999999999999987 7788888864 355788899999999997 66665444
No 169
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.90 E-value=0.36 Score=34.30 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=45.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|.--. ....++++...||.+|.+++ + ++.+...+..+|+.+..+. -+++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566666432 23457788889999999875 4 5566777889999997654 688999998763
No 170
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=93.53 E-value=0.045 Score=37.53 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=34.5
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHH--HHHHHHhcCChHHHHHHHh
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETV--TRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv--~~ALrAAfnNpdRAvEYLl 192 (267)
.+..+++|.+|++|| |+-|-- .+.|.+..+|..+|+|-|-
T Consensus 7 D~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 7 DPRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CHHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 357899999999999 976654 6999999999999999763
No 171
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.49 E-value=0.25 Score=42.71 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=50.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEE--Ee-CC--eecCC-ccchhhcCCCCCCEEEEEeec
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLL--IH-NG--KVLKD-ETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~-~QrL--Iy-~G--KiL~D-~~tLsd~gIkegstIvv~v~k 76 (267)
+++.++..+||.+|++.++..++ ++.+ +.|| +| .+ ..|.| +.+|.+++|.++..|++-++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8876 6888 34 33 35666 579999999999999987764
No 172
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.52 Score=37.98 Aligned_cols=65 Identities=28% Similarity=0.336 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCc-------------cchhhcCCC
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKDE-------------TTLADNKVS 65 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy-~G---K-iL~D~-------------~tLsd~gIk 65 (267)
+..+.+.|-..|||.++|+||-+..-.+ .| ++++.|-+ .| + +|.|. .||+.|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4457777878999999999999876533 33 35667765 33 3 47652 589999999
Q ss_pred CCCEEEEEee
Q 024466 66 EDGFLVVMLS 75 (267)
Q Consensus 66 egstIvv~v~ 75 (267)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999987643
No 173
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.83 E-value=0.073 Score=55.02 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCC-hHHHHHHHhc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNN-PERAVDYLYS 193 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnN-pdRAvEYLl~ 193 (267)
.++++++|++|| |++..+++||.+..|+ .++|++||+.
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~ 690 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMS 690 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhh
Confidence 467899999999 9999999999999886 9999999988
No 174
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.80 E-value=0.41 Score=38.06 Aligned_cols=63 Identities=27% Similarity=0.424 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCc-------------cchhhcCCCCC
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-NG---K-VLKDE-------------TTLADNKVSED 67 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy-~G---K-iL~D~-------------~tLsd~gIkeg 67 (267)
.+.+.|-..|||.++|+||-+..-.+ .| ++++.|-+ .| + +|.|. .||+.|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 46677778999999999999776433 33 34556654 33 3 46552 58999999999
Q ss_pred CEEEEEee
Q 024466 68 GFLVVMLS 75 (267)
Q Consensus 68 stIvv~v~ 75 (267)
.+|.++-+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988654
No 175
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.45 E-value=0.45 Score=33.93 Aligned_cols=65 Identities=8% Similarity=0.240 Sum_probs=45.2
Q ss_pred CEEEEEeCCC-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKG-SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~g-k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~--~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|+|+||.... +...+++ ...||.+|++.+....+ +.. ....+.-+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 8899997754 2234667 67899999999986533 221 44566778887543 24568999999876
No 176
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.30 E-value=0.57 Score=40.87 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=49.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-ccchhhcCCCCCCEEEEEeec
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIH-N----GKVLKD-ETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~-~QrLIy-~----GKiL~D-~~tLsd~gIkegstIvv~v~k 76 (267)
+++.++..+||.+|+++++..++ ++.+ +.||-. . ...|.| +.+|.++++.++..|.+=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 45677899999999999999999 8876 688842 3 235665 589999999999999887764
No 177
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=92.22 E-value=0.11 Score=43.49 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
.....+.+|++.| .|+|++|..||+++-+|.++|+--|-
T Consensus 101 ~R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 101 TRRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3455778889998 55999999999999999999997664
No 178
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.16 E-value=1.8 Score=32.42 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCccchhhcCCC
Q 024466 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY------PCGQQLLIHNGKVLKDETTLADNKVS 65 (267)
Q Consensus 1 MkItVKtl~------g-k~~~IeVd~s~TV~dLK~kI~~~~g~--d~i------p~~~QrLIy~GKiL~D~~tLsd~gIk 65 (267)
|+|+||... | ....+++....||.+|.+.+...... ..+ ......+..+|+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 677887653 3 35678888889999999999876420 000 0234567788888753 56789
Q ss_pred CCCEEEEE
Q 024466 66 EDGFLVVM 73 (267)
Q Consensus 66 egstIvv~ 73 (267)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 179
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.73 E-value=1.2 Score=40.94 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=52.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCccchhhcCCCCCCEEEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKD-NYPCGQQLLIH------NGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d-~ip~~~QrLIy------~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
+.|.-. +.+-++.++++.||.++..+|.++.... ..+.++--|.. +|+=|++.++|+.|++++|+.|...
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 444433 6677899999999999999999887520 12455556655 3555888899999999999988765
No 180
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=88.56 E-value=0.49 Score=41.11 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCC
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNN 183 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnN 183 (267)
+..|+++++|| |+++.|+.||+-...+
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRLGVK 196 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCC
Confidence 78999999999 9999999999765443
No 181
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.30 E-value=1 Score=33.68 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK 51 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK 51 (267)
|+|+|..- -++.|.|.++.+..+|.++|.++.+ ++++..+|-|+..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeCC
Confidence 34555543 6889999999999999999999999 8889999999753
No 182
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=87.16 E-value=1.2 Score=33.23 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+..-+.+|-+.=|.+.++.+.+.|.-++.+|++||++|+|+
T Consensus 33 rL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 33 RLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 455567888887778999999999999999999999999997
No 183
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=87.12 E-value=0.63 Score=32.71 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
++..++++.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 445688999999999 9999999999876
No 184
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=86.66 E-value=1.4 Score=35.49 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhC--CCCCC----CCCeEEEe-CC---eecCC----------c----cchhhcCCCC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQG--KDNYP----CGQQLLIH-NG---KVLKD----------E----TTLADNKVSE 66 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g--~d~ip----~~~QrLIy-~G---KiL~D----------~----~tLsd~gIke 66 (267)
..+.+.|-..|||.++|+||-+..- .. +| ++++.|-+ .| .+|.| . .||+.|+|.+
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~-~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D 117 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG-SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN 117 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS-SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC-CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence 3577888889999999999986542 11 33 34445543 22 23333 1 4688899999
Q ss_pred CCEEEEE
Q 024466 67 DGFLVVM 73 (267)
Q Consensus 67 gstIvv~ 73 (267)
|.+|.++
T Consensus 118 gatlal~ 124 (126)
T 3kuz_A 118 GSTIKVF 124 (126)
T ss_dssp TCEEEEE
T ss_pred CCEEEEe
Confidence 9999765
No 185
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.80 E-value=1.6 Score=32.58 Aligned_cols=57 Identities=7% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPS-DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s-~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+. ++++.. .||.+|.+.+ + ++.+...+..+|+++.. ....+.-+++||.|.++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence 34654 455666 8999998875 4 55667778899999853 345556799999998764
No 186
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.57 E-value=4.1 Score=40.65 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCc-------------cchhhcCCCC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-N---GK-VLKDE-------------TTLADNKVSE 66 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy-~---GK-iL~D~-------------~tLsd~gIke 66 (267)
..+.+.|-..|||.++|+||-+..-.+ .| +++.-|-+ . |+ +|.|. .||+.|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457778888999999999999776433 32 45556654 2 33 45552 5799999999
Q ss_pred CCEEEEEeec
Q 024466 67 DGFLVVMLSK 76 (267)
Q Consensus 67 gstIvv~v~k 76 (267)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999976543
No 187
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=84.12 E-value=1.3 Score=38.16 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.0
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
-.+|.+|-++ | ..=-+|.+||..+.+|.|.|+|||--
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4578899887 6 77899999999999999999999964
No 188
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=83.80 E-value=0.5 Score=32.64 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.++.+++|.+|= -++++|-++..|++--+|.|-||+.||.
T Consensus 10 ~e~~~~~~~L~~MF-P~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMF-PDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHS-TTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHc-ccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46789999999993 2389999999999999999999999985
No 189
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.66 E-value=3.3 Score=31.16 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
-.+|-..++..||+.++...| +.-+.-.+...+..|+++++|.|-+|+-...+.+.+--
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 355667889999999999999 77788888888888999999999999988888887754
No 190
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=83.59 E-value=1.3 Score=40.36 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=32.8
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 154 e~~I~~l~eM-G~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
-++|.+|-++ | ..=-+|.+||..+.+|.|.|+|||-
T Consensus 5 a~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR 41 (291)
T 1xb2_B 5 KELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLH 41 (291)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3578889887 7 8889999999999999999999997
No 191
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=83.44 E-value=0.94 Score=37.84 Aligned_cols=81 Identities=19% Similarity=0.017 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccccchhHHHHHHHHHhhcceeeeehHHHHHHHh-hhhccccceee
Q 024466 165 GGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNLLLFPFVVLAIIILLTSRFRRYNVLTFREFQK-QLKLLSQWLIF 243 (267)
Q Consensus 165 ~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 243 (267)
||++.+.++.+||+.+-+|.++||..++.-+..- |-. + -+.- -|..++..+.-. .-+-+.+-+.-
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~~K-----~~e------L-~s~G--~~~~~~~~~aL~~~~Gdv~~Al~e 137 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECVRTRRRK-----VQE------L-QSLG--FGPEEGSLQALFQHGGDVSRALTE 137 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----HHH------H-HHTT--CCGGGTHHHHHHHTTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHHHHHHHH-----HHH------H-HhcC--CchHHHHHHHHHHcCCcHHHHHHH
Confidence 7999999999999999999999999987633210 000 0 0111 123333333322 22334455677
Q ss_pred eehHHHHHHHHHHHhh
Q 024466 244 LQVRQLKLVQQELHQS 259 (267)
Q Consensus 244 ~~~~~~~~~~~~~~~~ 259 (267)
||--|++=|-|-|+..
T Consensus 138 Lqr~lLePF~~RIW~~ 153 (162)
T 4dbg_B 138 LQRQRLEPFRQRLWDS 153 (162)
T ss_dssp HHHHHTHHHHHHHHCC
T ss_pred HHHHHhhHHHHHhccC
Confidence 8999999999988865
No 192
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.95 E-value=4.1 Score=29.83 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=43.8
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCCC--CC--------CCCCeEEEeCCeecCCccchhhcCC
Q 024466 1 MKLTVKTLK------GSHFEIRVQPSDTVMAVKKNIEDVQGKD--NY--------PCGQQLLIHNGKVLKDETTLADNKV 64 (267)
Q Consensus 1 MkItVKtl~------gk~~~IeVd~s~TV~dLK~kI~~~~g~d--~i--------p~~~QrLIy~GKiL~D~~tLsd~gI 64 (267)
|+|+|+... |....+++ ...||.+|.+.+......- .+ -.....+..+|+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 778887542 33334665 4579999999999875310 00 01135666788876542222 4568
Q ss_pred CCCCEEEEEe
Q 024466 65 SEDGFLVVML 74 (267)
Q Consensus 65 kegstIvv~v 74 (267)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998763
No 193
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.32 E-value=3.5 Score=29.93 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP----------CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip----------~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
....+++....||.+|++.+...... +. .....+.-+|+...+ +.-+++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56778888888999999999887531 10 012567788888765 4568899999876
No 194
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=82.10 E-value=2.2 Score=30.60 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+ ++ ...||.+|.+. .+ ++++..-+..+|.++. .....+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~--e~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQR--EV-QSASVAALMTE----LD---CTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEE--CC-CCSBHHHHHHH----TT---CCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEE--Ec-CCCcHHHHHHH----cC---CCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEc
Confidence 55554 46654 44 56899998764 56 6777888889999984 3456677899999998874
No 195
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=81.33 E-value=2.1 Score=29.70 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=42.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+. +++....||.+|.+.+ + ++.+...+..+|+.+.. ....+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEe
Confidence 55544 4654 4566778999999876 4 45667778889998853 233455689999998763
No 196
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.17 E-value=4.1 Score=28.12 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=41.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+|...+|+. +++..+.|+.+|-+.+....+ ....-...+|++.+-+ +-+++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 888998778876 566678999999888743322 1122224688876543 4566788877664
No 197
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=81.06 E-value=7.7 Score=33.98 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=52.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe---CCe--ecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIH---NGK--VLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip-~~~QrLIy---~GK--iL~D~~tLsd~gIkegstIvv~v 74 (267)
|.+.|..++| ++.++++++.|+.+|=+.|++..| +. .+-.-|.| +|. -|+.++.+.+.+++.+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4678888988 678999999999999999999999 43 33334544 333 36777888887766666555555
Q ss_pred ec
Q 024466 75 SK 76 (267)
Q Consensus 75 ~k 76 (267)
++
T Consensus 78 r~ 79 (294)
T 1ef1_A 78 RA 79 (294)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 198
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=80.82 E-value=2.1 Score=33.00 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=31.6
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 154 EQTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 154 e~~I~~l~e-MG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
++.|+-+|+ +| =+|+++++||+.+.||.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 567888887 68 9999999999999999999998873
No 199
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.11 E-value=9.6 Score=33.80 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=52.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe--CCe--ecCCccchhhcCCCCCCEEEEEeec
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIH--NGK--VLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip-~~~QrLIy--~GK--iL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.+.|..++| ++.++++++.|+.+|=+.|++..| +. .+-.-|.| .|. -|+.++.|.+.+++.+....+..++
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 577888898 788999999999999999999999 43 33334544 443 3777888988877666655555544
No 200
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=79.96 E-value=3.6 Score=33.08 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=40.3
Q ss_pred EEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--ccchhhcCCCCCCEEEEEe
Q 024466 14 EIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVL-----KD--ETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 14 ~IeVd~----s~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL-----~D--~~tLsd~gIkegstIvv~v 74 (267)
.+.|+. ..|..+|-+.|..+.| +. ++..++- ..++| +| +++|+++||+.|++|.++=
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 345553 4699998888988888 54 3555542 33444 22 4899999999999998874
No 201
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.89 E-value=6.2 Score=39.49 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=44.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCc-------------cchhhcCCCCC
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSED 67 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip------~~~QrLIy----~GK-iL~D~-------------~tLsd~gIkeg 67 (267)
.+.+.|-..|||.++|+||-+..-.+ .| +++..|-+ .|+ +|.|. .||+.|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 46677888999999999999665332 33 34555544 233 46653 58999999999
Q ss_pred CEEEEEee
Q 024466 68 GFLVVMLS 75 (267)
Q Consensus 68 stIvv~v~ 75 (267)
++|.++-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99987544
No 202
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=78.68 E-value=3.3 Score=29.09 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ--LLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q--rLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
....+++....||.+|.+.+..... ..+.. .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p----~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP----QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG----GGTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc----chhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 3456777778899999999887643 11334 678899988653 468889998876
No 203
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=77.80 E-value=4.7 Score=30.81 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----Ce--------ecCC------ccchhhcCCCCCCEEEEE
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----GK--------VLKD------ETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~----GK--------iL~D------~~tLsd~gIkegstIvv~ 73 (267)
...+++++++|+.+|-+.+.+.-. +....=.|-+. || .|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999998433 22222233333 33 2322 477999999999998873
No 204
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=76.38 E-value=6.8 Score=27.30 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=38.8
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCc
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRI 196 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~ 196 (267)
.+.++.+|+.+.+|= =.++++++..-|+-. +|+|.-+|=+|.|++
T Consensus 14 ~sql~~Mve~V~~mF-Pqv~~~~I~~DL~rT-gSVe~TienILeGri 58 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMF-PQVPYHLVLQDLQLT-RSVEITTDNILEGRI 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-TTSCHHHHHHHHHHH-CCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcccC
Confidence 457899999999992 117999999999988 999999999999874
No 205
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=76.14 E-value=3.5 Score=29.91 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd--~s~TV~dLK~kI~~~~g~d~ip-~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
|+|+| +|+.+ +++ ...||.+|.+. .+ ++ ++..-+..+|.++.. ....+.-+++||.|-++-
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 66655 46654 555 67899998875 35 56 667778899999853 356667789999998764
No 206
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=75.92 E-value=3.2 Score=32.37 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=41.6
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCccc---h
Q 024466 1 MKLTVKTLK------G--SHFEIRVQP---SDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GK------VLKDETT---L 59 (267)
Q Consensus 1 MkItVKtl~------g--k~~~IeVd~---s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~-GK------iL~D~~t---L 59 (267)
|+|+|+... | +...++++. ..||.+|...+.+.+. ..+.+|+.. |+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 677877543 3 356688873 3699999999988752 223333222 32 2323332 2
Q ss_pred --hhcCCCCCCEEEEEe
Q 024466 60 --ADNKVSEDGFLVVML 74 (267)
Q Consensus 60 --sd~gIkegstIvv~v 74 (267)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999987754
No 207
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=75.66 E-value=5.9 Score=29.68 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=32.0
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCC
Q 024466 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLL-IHNG 50 (267)
Q Consensus 3 ItVKtl-~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrL-Iy~G 50 (267)
++||.. ++-.|.|-|..+.+..+||.+|..... + +...| .|++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 344433 566899999999999999999999987 4 45555 4443
No 208
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=75.61 E-value=6.1 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
.++.|++.++.-| -+++.++.-|.++..|.++||.-.+
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999742 5899999999999999999997544
No 209
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.11 E-value=10 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=49.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCccch----hhcCCCCCCEEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI------HNGKVLKDETTL----ADNKVSEDGFLVV 72 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI------y~GKiL~D~~tL----sd~gIkegstIvv 72 (267)
|+|-..+|....|.|++++|+.++=+.+.++.++. ....--|+ +--+.++|...| +...+..++.+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45556789999999999999999999999998842 22232332 123678887654 4445666777766
Q ss_pred Eee
Q 024466 73 MLS 75 (267)
Q Consensus 73 ~v~ 75 (267)
.-+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 443
No 210
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=75.00 E-value=5.6 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.3
Q ss_pred CEEEEEeCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 024466 1 MKLTVKTLK-------G-SHFEIRVQ--PSDTVMAVKKNIEDVQG 35 (267)
Q Consensus 1 MkItVKtl~-------g-k~~~IeVd--~s~TV~dLK~kI~~~~g 35 (267)
|+|+||... | +..++++. ...||.+|.+.+.+...
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 577776432 2 45667776 67899999999998863
No 211
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.48 E-value=14 Score=33.61 Aligned_cols=71 Identities=24% Similarity=0.218 Sum_probs=52.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCccchhhcCCCCCCEEEE
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------KVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G---------KiL~D~~tLsd~gIkegstIvv 72 (267)
.+.|..++|....++++++.|+.+|=+.|++..|. ...+..-|.+.. .-|+.++++.+-++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57889999999999999999999999999999983 234455665532 2355567777777666666655
Q ss_pred Ee
Q 024466 73 ML 74 (267)
Q Consensus 73 ~v 74 (267)
.+
T Consensus 165 rv 166 (371)
T 3ivf_A 165 RR 166 (371)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 212
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=74.10 E-value=1 Score=35.08 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=41.2
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--e------ecCCccch--
Q 024466 1 MKLTVKTLK------GSHFEIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNG--K------VLKDETTL-- 59 (267)
Q Consensus 1 MkItVKtl~------gk~~~IeVd~----s~TV~dLK~kI~~~~g~d~ip~~~QrLI-y~G--K------iL~D~~tL-- 59 (267)
|+|+||... |+...++++. ..||++|-..+.+... ..+-+|+ -.| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 567777554 3445677663 2499999888888753 2333333 123 2 34344433
Q ss_pred ---hhcCCCCCCEEEEEe
Q 024466 60 ---ADNKVSEDGFLVVML 74 (267)
Q Consensus 60 ---sd~gIkegstIvv~v 74 (267)
.++-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 246799999987753
No 213
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=73.85 E-value=12 Score=27.95 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=35.4
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeCCe
Q 024466 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC-GQQLLIHNGK 51 (267)
Q Consensus 3 ItVKt-l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~-~~QrLIy~GK 51 (267)
|+||. .+|....+.++++.+..+|.++|.+.++ +.. +...+-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 44553 4678889999999999999999999988 544 3467777654
No 214
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.78 E-value=8.1 Score=26.74 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+..++.|++.+++-| =+++.++.-|.++..|.++||...+.
T Consensus 13 ~~~~e~i~qF~~iTg--~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 13 SALKGLIQQFTTITG--ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 455789999999743 56999999999999999999986655
No 215
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=71.67 E-value=19 Score=31.96 Aligned_cols=70 Identities=10% Similarity=-0.058 Sum_probs=48.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCccchhhcCCCCCCEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVV 72 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~---G--KiL~D~~tLsd~gIkegstIvv 72 (267)
|.+.|..++|....++|++..|+.+|=..|++..|. ...+..-|.|. | .-|+.++.+.+......-.+++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 468899999999999999999999999999999992 23333455443 2 2366677777764333334443
No 216
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=69.68 E-value=17 Score=27.08 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=41.3
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCCC-CC----Ce-------EEEeCCeecCCccch
Q 024466 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNYP-CG----QQ-------LLIHNGKVLKDETTL 59 (267)
Q Consensus 1 MkItVKtl~------g-k~~~IeVd~s~TV~dLK~kI~~~~g~--d~ip-~~----~Q-------rLIy~GKiL~D~~tL 59 (267)
|+|+|+... | +.+ +++ ..||.+|.+.+...... +.+- .. .. .+..+|+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 678887654 2 234 444 68999999999887420 0010 00 23 5667887663221 1
Q ss_pred hhcCCCCCCEEEEE
Q 024466 60 ADNKVSEDGFLVVM 73 (267)
Q Consensus 60 sd~gIkegstIvv~ 73 (267)
.+.-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 24468999998875
No 217
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.66 E-value=16 Score=35.96 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=53.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeC---C--eecCCccchhhcCCCCCCEEEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip-~~~QrLIy~---G--KiL~D~~tLsd~gIkegstIvv~v 74 (267)
|.+.|..++| ++.+.|+++.|+.+|=..|+...| +. .+-.-|.|. | .-|+.++.|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3578888888 778999999999999999999999 43 334455542 2 246777888888777666665555
Q ss_pred ecC
Q 024466 75 SKS 77 (267)
Q Consensus 75 ~k~ 77 (267)
+++
T Consensus 81 Rvk 83 (575)
T 2i1j_A 81 RAK 83 (575)
T ss_dssp EES
T ss_pred EEE
Confidence 543
No 218
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=68.95 E-value=8.6 Score=26.27 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
++|+.+ ++ ...||.+|.+.+ + ++.+...+..+|+.+..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~--~~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPR--PL-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEE--CC-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEE--Ec-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 466654 45 568999998876 4 455667788899988532 33445689999998764
No 219
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=66.39 E-value=24 Score=31.71 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-ccchhhcCCCC
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG-KVLKD-ETTLADNKVSE 66 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~G-KiL~D-~~tLsd~gIke 66 (267)
....+.+.+..|+.++++++++..+ ++++.|.|+|.+ +..-| ......|.-..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~ 376 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTT 376 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCCC
Confidence 4456788899999999999999999 899999999998 44433 44556664433
No 220
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=66.09 E-value=7.6 Score=26.42 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.9
Q ss_pred cCCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 146 ~l~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
.++.+..+.+.+++ |+|+-+.+||+.+.+|..+|++.|=
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 34445556655543 7899999999999999999999773
No 221
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=65.28 E-value=5.8 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=28.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy 48 (267)
.+.|-.+.|+.+||..|++..| +++++|||-.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 4677789999999999999999 9999999953
No 222
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=63.35 E-value=32 Score=25.55 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC--CCCCCeEEEeCC--eecCCccchhhcCCCCCCEEEEEe
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDN--YPCGQQLLIHNG--KVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~-g~d~--ip~~~QrLIy~G--KiL~D~~tLsd~gIkegstIvv~v 74 (267)
.-+.||.++|+.++-++++... |... -|..-.+..+.| +.|..+.++++.||++-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3478999999999999998543 3221 122245777999 899999999999999999998765
No 223
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.87 E-value=45 Score=25.06 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 21 ~TV~dLK~kI~~~~g~d~ip~~~QrLIy--~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.+..+|+.|..+..+ ++....+|+. .|.+++|+.-+..+ +++++.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999998 7655677754 59999888766655 35677666654
No 224
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.47 E-value=27 Score=24.19 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=39.4
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcc
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRIT 197 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~ 197 (267)
.+..+.+|+++.+|= =..+++.+..-|+-.- |.|.-+|=+|.|++.
T Consensus 10 ~~q~~~mv~~V~~mf-P~vp~~~I~~DL~~Tg-sVe~TienILeGrl~ 55 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMF-PQVPYHLVLQDLQLTR-SVEITTDNILEGRIQ 55 (58)
T ss_dssp CCHHHHHHHHHHHHC-CSSCHHHHHHHHHHHC-SHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CHHHHHHHHHhcCCC
Confidence 467899999999992 1179999999998887 999999999999864
No 225
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=59.33 E-value=38 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 12 HFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 12 ~~~IeVd~s~TV~dLK~kI~~~~g~--d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
...++ ....||.+|.+.+...... ..+..+...+..+|+.... +.-+++||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45555 5677999999998754210 0011234567789988753 4568899999876
No 226
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.58 E-value=38 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcc
Q 024466 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVRIT 197 (267)
Q Consensus 150 g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~ 197 (267)
.+..+.+++++.+|= =.++++.+..-|+-.- |.|..+|=+|.|+++
T Consensus 10 ~~ql~~mv~~V~~mf-P~vp~~~I~~DL~~Tg-sVe~TienILeGr~~ 55 (61)
T 2ekf_A 10 DVQLATLAQRVKEVL-PHVPLGVIQRDLAKTG-CVDLTITNLLEGAVA 55 (61)
T ss_dssp CCCHHHHHHHHHHHC-SSSCHHHHHHHHHTSC-CHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CHHHHHHHHHcCCCC
Confidence 357899999999992 1179999999998874 999999999999874
No 227
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=57.72 E-value=39 Score=25.08 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCccchhhcCCCCCCEEEEEe
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDN-YPCGQQLLIHNGKV--LKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~-g~d~-ip~~~QrLIy~GKi--L~D~~tLsd~gIkegstIvv~v 74 (267)
.-+.||.++|+.++-++++... |... -.+.-.+..+.|.. |.++.++++.||++-+.|-+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3468999999999999998654 3221 12336788899988 9999999999999999998764
No 228
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=55.11 E-value=39 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=37.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCC--C--CC----CCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGK--D--NY----PCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~--d--~i----p~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
.++++...||.+|.+.+...... . .+ ......+..+|+...... -.+.-+++||.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 34566678999999999876310 0 00 013456778888775221 134458999998876
No 229
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=54.03 E-value=24 Score=26.36 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.9
Q ss_pred EEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhC
Q 024466 3 LTVKTLKGSH-FEIRVQ-PSDTVMAVKKNIEDVQG 35 (267)
Q Consensus 3 ItVKtl~gk~-~~IeVd-~s~TV~dLK~kI~~~~g 35 (267)
|..|....+. ..+.++ ...+|.+||..|..+.+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 5666665543 457777 56799999999999888
No 230
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=53.63 E-value=5.3 Score=28.48 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=35.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
.++++...||.+|.+.+ + ++.+...+..+|+.+..+ .-+++||.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 45666778999998764 4 455667788999998764 568888887654
No 231
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.24 E-value=33 Score=24.01 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc-CCcc
Q 024466 155 QTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS-VRIT 197 (267)
Q Consensus 155 ~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~-~~~~ 197 (267)
+.|++.+++-| =+++.++.-|.++..|.++||.-.+. +.++
T Consensus 19 ~~i~qF~~iTg--~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~~ 60 (66)
T 2dzl_A 19 VMINQFVLAAG--CAADQAKQLLQAAHWQFETALSTFFQETNIP 60 (66)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHTTTTCHHHHHHHHHTCSCCC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 78999999732 58999999999999999999987665 4443
No 232
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.02 E-value=49 Score=23.11 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+.++.|++.+++-| .=+.+.++.-|.++..|.++||.-.+.
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456789999999863 227889999999999999999987665
No 233
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.96 E-value=59 Score=23.72 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
.+..+++|-|.- |-=+-.-...||+|+.+|...||-+|..
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 456889999985 3446677778999999999999999988
No 234
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=49.39 E-value=45 Score=22.42 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHHHHHH--hCCCCCCHHHHHHHHHHhcCChHHHHHHHhcC
Q 024466 154 EQTIQQIMD--MGGGTWDKETVTRALQAAYNNPERAVDYLYSV 194 (267)
Q Consensus 154 e~~I~~l~e--MG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~ 194 (267)
|+.|.+... -| -+|+-++|-|+-..-|++.||.-|++-
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 566666555 48 999999999999999999999999983
No 235
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=49.32 E-value=35 Score=34.20 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCccchhhc
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-VLKDETTLADN 62 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK-iL~D~~tLsd~ 62 (267)
.+...+.+.++.|+.++|..|++.+| ++++.|.+++.+. .+......+.|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 44567888999999999999999999 9999999998765 45555566665
No 236
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=49.18 E-value=25 Score=29.94 Aligned_cols=26 Identities=8% Similarity=0.396 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024466 152 DLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
..++++..|+.+| |.+.++.+|++..
T Consensus 159 ~~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 159 AEQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 3578999999999 9999999999987
No 237
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=47.33 E-value=76 Score=22.75 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.|+|.+.+|..+ ++..+.|+.|+=..|....+. .-.--..+|+...- ++-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L-----~~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPI-----DYKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECT-----TCBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCC-----CcccCCCCEEEEEccC
Confidence 478888999775 456888999998888766552 11222347876654 3457889998877543
No 238
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=47.05 E-value=8.9 Score=26.05 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
|||+-+.+||+.+ +|..+|.+.|=
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~LG 44 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRLG 44 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHhC
Confidence 7899999999999 99999999773
No 239
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=46.24 E-value=15 Score=28.09 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-------cCChHHHHHHHhc
Q 024466 156 TIQQIMDMGGGTWDKETVTRALQAA-------YNNPERAVDYLYS 193 (267)
Q Consensus 156 ~I~~l~eMG~~~f~Reqv~~ALrAA-------fnNpdRAvEYLl~ 193 (267)
.|++.++|| |++..|.++++-- |...+.-|+=|++
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~ 71 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVN 71 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 789999999 9999999999763 3444444444444
No 240
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=45.42 E-value=90 Score=23.09 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=44.8
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCCe----EEEe-CCeecCCccchhhcCCCCCCEEEEE
Q 024466 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKD-NYPCGQQ----LLIH-NGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd-~s~TV~dLK~kI~~~~g~d-~ip~~~Q----rLIy-~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
|||+|+. .+..+.+-.. ...||.+|-++--..+-+. .-.++.. .|-+ .|-+|+.+..|.|. +.++++|.-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 4556667664 4459998866554333210 0112222 2223 67899988999987 6788887755
Q ss_pred e
Q 024466 74 L 74 (267)
Q Consensus 74 v 74 (267)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 241
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=43.44 E-value=13 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
|||+-+.+||+.+.+|..+|++.|=
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 6888999999999999999999874
No 242
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=43.11 E-value=38 Score=29.08 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAA 180 (267)
.++++..|+.+| |.+.++.+|++..
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 478999999999 9999999999886
No 243
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=42.99 E-value=34 Score=25.77 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccchhhcCCCCCCEEEEEe
Q 024466 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (267)
Q Consensus 11 k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~v 74 (267)
..+.+++..+.||.++-+...-......+......+-.+|+... .+.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 34667888999999998887543221003444678888899887 445588999998763
No 244
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=41.05 E-value=58 Score=31.26 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=36.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIH 48 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~--~~QrLIy 48 (267)
|.+.|..++|....++++.+.|+.+|-+.|++..| +.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEE
Confidence 35788899999999999999999999999999999 542 3445543
No 245
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=40.95 E-value=1.1e+02 Score=24.18 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=41.5
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCccchhhc--CC-CCCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNGKVL-KDETTLADN--KV-SEDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI-y~GKiL-~D~~tLsd~--gI-kegstIvv~v~k 76 (267)
-|..+.||.++...|....+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+|++..+.
T Consensus 58 lVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 58 LVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp EEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 46688999999999999998 666655545 766655 556777766 22 357788887653
No 246
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.12 E-value=1.4e+02 Score=22.86 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCe--ecCCccchhhcCCCCCCEEEEEee
Q 024466 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGK--VLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 8 l~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI---y~GK--iL~D~~tLsd~gIkegstIvv~v~ 75 (267)
.+..-+++.+..+.|+.+++..++++.+ +..+.+.|+ ++|. +|+++..--.-.+.-+..|++-.+
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3455667888888999999999999998 555678775 6775 455554333333555678876554
No 247
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.08 E-value=25 Score=32.15 Aligned_cols=29 Identities=21% Similarity=0.490 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYN 182 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfn 182 (267)
.++|..|..+.+|| |+.+++.++|...-.
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcc
Confidence 47899999999999 999999999988544
No 248
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=36.89 E-value=1e+02 Score=23.99 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=41.8
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCccchhhc--CC-CCCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~-QrLIy~GKiL~D~~tLsd~--gI-kegstIvv~v~k 76 (267)
-|..+.||+++...|....+ +.+++ .-|..++....-+.+++++ .- .++++|+|..+.
T Consensus 53 lVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 53 LVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 46688999999999999988 55555 4445577766667777766 22 356788887654
No 249
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=36.67 E-value=1.1e+02 Score=24.04 Aligned_cols=58 Identities=21% Similarity=0.122 Sum_probs=40.9
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCccchhhc--CC-CCCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GKiL~D~~tLsd~--gI-kegstIvv~v~k 76 (267)
-|..+.||.++...|..... +.+++--.+| ++....-+.+++++ .- .++.+|++..+.
T Consensus 58 lVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 58 LVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 46688999999999999988 6666544444 55444667777766 22 356788887754
No 250
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=36.59 E-value=51 Score=21.45 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHhCCCCCC-HHHHHHHHHHhcCChHHHHH
Q 024466 152 DLEQTIQQIMDMGGGTWD-KETVTRALQAAYNNPERAVD 189 (267)
Q Consensus 152 ~~e~~I~~l~eMG~~~f~-Reqv~~ALrAAfnNpdRAvE 189 (267)
+.++.|.+.+++- | -+ -++++.=|.++..|-+.||.
T Consensus 4 d~de~ia~F~~iT-G-~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACT-G-IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHH-C-CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHH-C-CCCHHHHHHHHHHcCCcHHHHHH
Confidence 4688999999984 1 55 48999999999999998873
No 251
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=34.49 E-value=1.5e+02 Score=22.95 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=40.5
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCccchhhc---CCCCCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVLKDETTLADN---KVSEDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GKiL~D~~tLsd~---gIkegstIvv~v~k 76 (267)
-|..+.||.++...|....+ +.+++--.+| ++....-+.+++++ .-.++.+|++..+.
T Consensus 52 lVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 52 LVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 36788999999999999988 6565544445 55544566777665 22356688887654
No 252
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=34.07 E-value=45 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~k 29 (267)
+|+|...+|....+++.++.||.+.-..
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999886543
No 253
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.56 E-value=28 Score=33.73 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=28.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI 47 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI 47 (267)
.+.|..+.|+.+||+.|++..| +++++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg---~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---SCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhC---cCcccEEEE
Confidence 4677789999999999999999 899999983
No 254
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=33.09 E-value=86 Score=23.21 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=41.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCccchhhc--CCCCCCEEEEEeec
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-NGKVL-KDETTLADN--KVSEDGFLVVMLSK 76 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy-~GKiL-~D~~tLsd~--gIkegstIvv~v~k 76 (267)
.+-|..+.||.++...|....+ +.+++--.+| +...+ ..+.+++++ .-+++++|++.-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 3556789999999999999988 6555544455 55544 446676655 22378899887654
No 255
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=32.77 E-value=23 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
|+|+-+.+||+.+.+|..+|++.|=
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 6899999999999999999999874
No 256
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=32.69 E-value=1.2e+02 Score=23.31 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=39.7
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCccchhhc--CC-CCCCEEEEEeec
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~-QrLIy~GKiL~D~~tLsd~--gI-kegstIvv~v~k 76 (267)
-|..+.||+++...|....+ +.+++ .-|+.++....-+.+++++ .. .++++|++..+.
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45568899999999999888 55555 4444455544567777766 22 357799988764
No 257
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=32.47 E-value=1.1e+02 Score=23.24 Aligned_cols=57 Identities=21% Similarity=0.093 Sum_probs=38.3
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCccchhhc--CC-CCCCEEEEEee
Q 024466 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLS 75 (267)
Q Consensus 16 eVd~s~TV~dLK~kI~~~~g~d~ip~~~-QrLIy~GKiL~D~~tLsd~--gI-kegstIvv~v~ 75 (267)
-|..+.||+++...|....+ +.+++ .-|+.++....-+.+|+++ .. .++.+|++..+
T Consensus 49 lVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 49 LVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 45568899999999999887 55554 4454455544567777776 22 34778887653
No 258
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=31.79 E-value=98 Score=23.11 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=34.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVL 53 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q-rLIy~GKiL 53 (267)
..++.+.|+...|=.++|+.|+..++ +.+... .++..||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 35789999999999999999999999 777766 456777743
No 259
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=31.68 E-value=1.7e+02 Score=25.92 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=45.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eC----CeecCCccchhh----cCCCCCCEEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HN----GKVLKDETTLAD----NKVSEDGFLVV 72 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLI--y~----GKiL~D~~tLsd----~gIkegstIvv 72 (267)
|.|-..+|....|+|++++|+.||=+.+..+.++ ...+.--|+ +. -+.|+|...+-+ .....++.+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 3444567888999999999999999988888773 222333332 11 267888766544 35666666665
Q ss_pred E
Q 024466 73 M 73 (267)
Q Consensus 73 ~ 73 (267)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 260
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=31.04 E-value=10 Score=32.09 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAY 181 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAf 181 (267)
.++++..|+.+| |.+.++.+|++...
T Consensus 146 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 171 (191)
T 1ixr_A 146 AEEAVMALAALG---FKEAQARAVVLDLL 171 (191)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 366899999999 99999999998874
No 261
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=30.47 E-value=1.4e+02 Score=24.26 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=37.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCccchhhcCCCCCCEEEEE
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYP---------CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip---------~~~QrLIy~GKiL~D~~tLsd~gIkegstIvv~ 73 (267)
.++++. .||.+|.+.+...... +. .....+..+|+......- .+.-+++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 456665 8999999999876320 10 134567778887754322 34569999998876
No 262
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.80 E-value=19 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 168 WDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 168 f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
|+|+-+.+||+.+.+|..+|.+.|=
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 7899999999999999999999774
No 263
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=29.73 E-value=1.9e+02 Score=25.27 Aligned_cols=68 Identities=7% Similarity=0.052 Sum_probs=41.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCccchhhc--CCCCCCEEEEE
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-------GKVLKDETTLADN--KVSEDGFLVVM 73 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~-------GKiL~D~~tLsd~--gIkegstIvv~ 73 (267)
|+|-.-+|....|.|++++|+.+|=..+..+.+ +..+.-..++. -+.|+|...+-+. ....++.+++.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 455566788899999999999999999888766 33333333332 3678886554333 23344555443
No 264
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=29.72 E-value=1.7e+02 Score=23.00 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=45.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CC--C--CCCCCCeEEEeCCeecC--CccchhhcCCCCCCEEEEE
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQ-GK--D--NYPCGQQLLIHNGKVLK--DETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~-g~--d--~ip~~~QrLIy~GKiL~--D~~tLsd~gIkegstIvv~ 73 (267)
+.+-|.++++.++|-+.+-... +. | .+.-++-....+|+... .+++|++.||...+.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 5678899999999887766332 21 0 13445567888999884 4789999999999998765
No 265
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=29.57 E-value=1.8e+02 Score=23.46 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=43.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe----EEEeC-----------------Ceec-CCccchhhcCCCCCCEE
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ----LLIHN-----------------GKVL-KDETTLADNKVSEDGFL 70 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q----rLIy~-----------------GKiL-~D~~tLsd~gIkegstI 70 (267)
+.|-.-.+.|+.+|=..|.+.... .+...- +++|- |+.- +|++||.+++..-||.|
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 566677899999999999987541 111122 33332 3322 56899999999999999
Q ss_pred EEEeecC
Q 024466 71 VVMLSKS 77 (267)
Q Consensus 71 vv~v~k~ 77 (267)
.|-+..+
T Consensus 134 dvaI~pP 140 (143)
T 4a6q_A 134 DIAITPP 140 (143)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 9988654
No 266
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=29.54 E-value=79 Score=31.68 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cC--CccchhhcCCCCCCEEEEE
Q 024466 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG--------QQLLIHNGK--V----LK--DETTLADNKVSEDGFLVVM 73 (267)
Q Consensus 13 ~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~--------~QrLIy~GK--i----L~--D~~tLsd~gIkegstIvv~ 73 (267)
..++++.+.|+.++-+.++.+.... +..- ..+++|... . .+ -+++|+++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577888889999988888853200 2111 246666532 1 11 2578999999999998874
No 267
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=29.38 E-value=84 Score=23.98 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCccchhhcCCCCCCEEEEEeec
Q 024466 21 DTVMAVKKNIEDVQGKDNYPCG--QQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (267)
Q Consensus 21 ~TV~dLK~kI~~~~g~d~ip~~--~QrLI--y~GKiL~D~~tLsd~gIkegstIvv~v~k 76 (267)
.+..+|+.|..++.+ ++.. ..+|+ ..|.+++|+.-+..+. ++++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tLp---~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCLP---SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSSC---SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcCC---CCCEEEEEcC
Confidence 379999999999998 6542 35554 3699998876655543 5566555543
No 268
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=29.07 E-value=30 Score=25.76 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHhcCChHHHHHHHhcCCcccccc-cchhHHHHHHHHHhhcceeeeehHH-----HHHHHhhhhcc
Q 024466 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSVRITSKNL-LLFPFVVLAIIILLTSRFRRYNVLT-----FREFQKQLKLL 237 (267)
Q Consensus 164 G~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 237 (267)
.-|.|.|+|+ .|.-++|.|+- | |.|- .-|--|+= . --|.|.+|-.|+.. ...|...-+|+
T Consensus 8 pegpFtReQA-~aV~~~Y~NVf----------I-EDDqG~HFRlVVR-~-~eg~mvWR~wnFEpdAg~~LNryi~s~GI~ 73 (87)
T 2hjj_A 8 PPGPFTRRQA-QAVTTTYSNIT----------L-EDDQGSHFRLVVR-D-TEGRMVWRAWNFEPDAGEGLNRYIRTSGIR 73 (87)
T ss_dssp --CCCCHHHH-HHHHHHCTTEE----------E-ESCSSSCCEEEEE-C-SSCCEEEEEESSSTTHHHHHHHHHTTTTTT
T ss_pred CCCCccHHHH-HHHHHHhccce----------e-ecCCCCeEEEEEE-c-CCCcEEEEeeccCCcHHHHHHHHHHHcCcc
Confidence 3478999995 56777888751 1 1121 22221110 0 13778888888764 23344455555
Q ss_pred ccc
Q 024466 238 SQW 240 (267)
Q Consensus 238 ~~~ 240 (267)
++-
T Consensus 74 k~~ 76 (87)
T 2hjj_A 74 TDT 76 (87)
T ss_dssp TC-
T ss_pred cch
Confidence 543
No 269
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=28.75 E-value=1.2e+02 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=38.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy 48 (267)
|.+.|..++|....++|+...|+.+|-..|+...|. ...+..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 457899999999999999999999999999999983 2345556655
No 270
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=28.68 E-value=42 Score=27.62 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~k 29 (267)
+|++. ++|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56665 7899999999999999986554
No 271
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=28.65 E-value=51 Score=31.91 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=46.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-Cccchhhc--CCCCCCEEEEEee
Q 024466 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----G--KVLK-DETTLADN--KVSEDGFLVVMLS 75 (267)
Q Consensus 15 IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~----G--KiL~-D~~tLsd~--gIkegstIvv~v~ 75 (267)
+-|+.+++|.+|-..|.+..| +|++.--.+|. + ..|+ .+.++.+. +|.+|+.|.+-..
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEec
Confidence 567889999999999999999 88876555554 3 3467 57899999 9999999877653
No 272
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.89 E-value=44 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=22.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~k 29 (267)
|.|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999887654
No 273
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=27.65 E-value=86 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 151 ~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
....+.|++.+++-| =+..++...|.++..|.+.|++-.+.
T Consensus 13 ~~~~~~i~qF~~iTg--~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 13 SPEQEAIESFTSLTK--CDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp CHHHHHHHHHHHHHC--CCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345778999999742 67889999999999999999986554
No 274
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=27.55 E-value=44 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=22.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~ 28 (267)
|+|+++ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356666 789999999999999998754
No 275
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=26.80 E-value=97 Score=23.93 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=30.7
Q ss_pred HHHHHH-HhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 156 TIQQIM-DMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 156 ~I~~l~-eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
.|.++| +.. -+=-.|.+||--..++.++|-.||++|.
T Consensus 16 ~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 16 IIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 334444 456 7889999999999999999999999986
No 276
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.56 E-value=84 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQG 35 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g 35 (267)
+..+.|-|.++.+..+|..+|.++.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45688999999999999999999988
No 277
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=26.32 E-value=2e+02 Score=21.27 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=41.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCccchhhc--CCCCCCEEEEEeec
Q 024466 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLSK 76 (267)
Q Consensus 14 ~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL-~D~~tLsd~--gIkegstIvv~v~k 76 (267)
.+-|..+.|+.++-..|.+..+ + +..-|.-+...+ ..+.+++++ .-+++++|++.-+.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 3567789999999999999988 5 455555566544 446677665 23367888887653
No 278
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=25.99 E-value=71 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=39.4
Q ss_pred CCCCccHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhcCC
Q 024466 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSVR 195 (267)
Q Consensus 147 l~~g~~~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~~~ 195 (267)
-..|...++.+..|.+.| =.+++++..||+++.--...|+|+|+-.+
T Consensus 160 sFig~ar~qLl~aL~~l~--ll~~~~~~~a~~~~~~~~~~~~~~~~~~~ 206 (214)
T 3kvh_A 160 AFVSTAKCQLLFALKVLN--MMPEEKLVEALAAATEKQKKALEKLLPAS 206 (214)
T ss_dssp CBCTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHhccCcchhHHHhhCccc
Confidence 345888999999999999 23999999999999999999999998644
No 279
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=25.10 E-value=54 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~k 29 (267)
.|++. ++|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45555 7899999999999999986554
No 280
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=24.47 E-value=67 Score=23.69 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=28.2
Q ss_pred CCCccHHHHHHHHHHhCCCCC-CHHHHHHHHHHhcCChHHHHHHH
Q 024466 148 VAGNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYL 191 (267)
Q Consensus 148 ~~g~~~e~~I~~l~eMG~~~f-~Reqv~~ALrAAfnNpdRAvEYL 191 (267)
.-++++++.|+..++-| .| .+++|+|++--..-.-++.++.|
T Consensus 9 sL~~~l~~~i~~~V~sG--~Y~s~SEviR~~lR~l~~re~~l~~L 51 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADG--RYGSASEVIRAGLRLLEENEAKLAAL 51 (88)
T ss_dssp CCCHHHHHHHHHHHTTT--SCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 35788999999999976 46 89999886433333334444443
No 281
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=23.74 E-value=63 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=21.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHH
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNI 30 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI 30 (267)
|+++ ++|+.+.++++++.|+.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4444 69999999999999998876543
No 282
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=23.69 E-value=48 Score=26.88 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHhc---CCccc-ccc--cchhHHHHHHHHH----h---------hccee-eeehHHHHHHHhhhhccccce
Q 024466 185 ERAVDYLYS---VRITS-KNL--LLFPFVVLAIIIL----L---------TSRFR-RYNVLTFREFQKQLKLLSQWL 241 (267)
Q Consensus 185 dRAvEYLl~---~~~~~-~~~--~~~~~~~~~~~~~----~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (267)
+.+.+||-. -++++ .++ .|=+-|+|+.+|- + .+.|. +=|+..|.++|+.+++...++
T Consensus 14 ~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~l 90 (159)
T 1p2x_A 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFH 90 (159)
T ss_dssp HHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccc
Confidence 445555544 33554 233 5567788887776 1 22232 348889999999888876654
No 283
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.99 E-value=54 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.497 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH-------HhcCChHHHHHHHhc
Q 024466 155 QTIQQIMDMGGGTWDKETVTRALQ-------AAYNNPERAVDYLYS 193 (267)
Q Consensus 155 ~~I~~l~eMG~~~f~Reqv~~ALr-------AAfnNpdRAvEYLl~ 193 (267)
..|+.-.+|| |++..|+++|+ -.|..++.-|+=|++
T Consensus 121 ~~v~~~l~mG---f~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~ 163 (345)
T 3t6p_A 121 PVVKSALEMG---FNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163 (345)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHhc---ccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHh
Confidence 5789999999 99999999997 456777777777766
No 284
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=22.98 E-value=70 Score=23.61 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~ 28 (267)
+|+|...+|+..++++.+++||.+.=.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVV 34 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHH
Confidence 577877788888899999999987543
No 285
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=22.73 E-value=1.3e+02 Score=22.35 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCee
Q 024466 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKV 52 (267)
Q Consensus 10 gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~Q-rLIy~GKi 52 (267)
..++.+.|+...|=.++|+.|+..++ +.+... .++..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCce
Confidence 36889999999999999999999999 666666 44677764
No 286
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=22.70 E-value=2.6e+02 Score=21.35 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=52.6
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---ecCCccchhhcCCCCCCEEEEEee
Q 024466 2 KLTVKTLKG---SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK---VLKDETTLADNKVSEDGFLVVMLS 75 (267)
Q Consensus 2 kItVKtl~g---k~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GK---iL~D~~tLsd~gIkegstIvv~v~ 75 (267)
+|+|...+. ..+++.|..+.-|+-|--+|-++.+.. -.-++--|-..-| +|+-..+|..|||+.+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577887553 568899998899999999998777510 1223334433332 578889999999999999987643
No 287
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=22.55 E-value=1e+02 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHh
Q 024466 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (267)
Q Consensus 153 ~e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl 192 (267)
.+..++.+..|| |+++++...|+.--+|.-.|.=||+
T Consensus 289 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~y~ll 325 (328)
T 3fe3_A 289 DQKRIDIMVGMG---YSQEEIQESLSKMKYDEITATYLLL 325 (328)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHCC---CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 466789999999 9999999999998888877776665
No 288
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=21.39 E-value=1e+02 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 024466 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (267)
Q Consensus 2 kItVKtl~gk~~~IeVd~s~TV~dLK~k 29 (267)
+|+|.+.+|+...+++.+++|+.+.=..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 5777767888888999999999886543
No 289
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.19 E-value=1.8e+02 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Q 024466 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQG 35 (267)
Q Consensus 3 ItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g 35 (267)
|.|-..+|....+.|+++.|+.+|-+.+.++.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC
Confidence 344456788888999999999999999999988
No 290
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.26 E-value=21 Score=28.55 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 154 e~~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+-.+++|-|.- |-=+-.-...||+|+.+|...||.+|..
T Consensus 19 Q~lLNQLrEIT-GIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 19 QMLLNQLREIT-GIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 44678888874 2335666778999999999999999988
No 291
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=20.70 E-value=11 Score=40.68 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhcCChHHHHHHHhc
Q 024466 156 TIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (267)
Q Consensus 156 ~I~~l~eMG~~~f~Reqv~~ALrAAfnNpdRAvEYLl~ 193 (267)
+|.+|-++-| ..=-+|.+||..+.+|.|.|+|||-.
T Consensus 8 ~VKeLRe~TG--agmmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 8 LVKELRERTG--AGMMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp CTHHHHTTTC--CCTTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4788888733 44568999999999999999999975
No 292
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=20.59 E-value=2.1e+02 Score=19.62 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCccch
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~kI~~~~g~d~ip~~~QrLIy~GKiL~D~~tL 59 (267)
|-++|| ++.+...+|+....-..+|-..+... | -...|--.|++|.....|
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaael 51 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAEL 51 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhh
Confidence 667888 66778999999999999998887764 4 245677789998765444
No 293
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=20.21 E-value=1.2e+02 Score=22.07 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 024466 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (267)
Q Consensus 1 MkItVKtl~gk~~~IeVd~s~TV~dLK~ 28 (267)
.+|+|...+|....+++.+++||.+.=.
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAAR 28 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 3688877888878899999999987543
Done!