Your job contains 1 sequence.
>024467
MMLQLQCLSSQTLNPKLCPFHSLSNSKGNGFGSISVTESTSIKKKKLYVKCRQSEYYEQK
SFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSRE
GFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVR
KVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAY
ASTIRADDTARTNNANPRYGGDYEWNR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024467
(267 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012542 - symbol:WHY1 "WHIRLY 1" species:3702 ... 878 6.7e-88 1
TAIR|locus:2058822 - symbol:WHY3 "AT2G02740" species:3702... 834 3.1e-83 1
UNIPROTKB|Q9LL85 - symbol:WHY1 "Single-stranded DNA-bindi... 809 1.4e-80 1
UNIPROTKB|B2LXS7 - symbol:WHY1 "Single-stranded DNA-bindi... 654 3.7e-64 1
UNIPROTKB|D9J034 - symbol:WHY2 "Single-stranded DNA-bindi... 447 3.2e-42 1
TAIR|locus:2032293 - symbol:ATWHY2 "WHIRLY 2" species:370... 437 3.6e-41 1
>TAIR|locus:2012542 [details] [associations]
symbol:WHY1 "WHIRLY 1" species:3702 "Arabidopsis
thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006952
"defense response" evidence=TAS] [GO:0003677 "DNA binding"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] [GO:0032211 "negative regulation of telomere
maintenance via telomerase" evidence=IMP] [GO:0042162 "telomeric
DNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP]
InterPro:IPR009044 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009507 GO:GO:0006952 GO:GO:0006355 GO:GO:0006281
GO:GO:0006351 GO:GO:0032211 EMBL:AC012188 GO:GO:0042162
Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508 EMBL:AF332452
EMBL:AF370156 EMBL:AY059097 IPI:IPI00543013 PIR:F86278
RefSeq:NP_172893.1 UniGene:At.12043 HSSP:Q9LL85
ProteinModelPortal:Q9M9S3 SMR:Q9M9S3 STRING:Q9M9S3 PaxDb:Q9M9S3
PRIDE:Q9M9S3 EnsemblPlants:AT1G14410.1 GeneID:838003
KEGG:ath:AT1G14410 TAIR:At1g14410 eggNOG:NOG243049
HOGENOM:HOG000006196 InParanoid:Q9M9S3 OMA:VDESIYI PhylomeDB:Q9M9S3
ProtClustDB:CLSN2682942 Genevestigator:Q9M9S3 InterPro:IPR013742
Pfam:PF08536 Uniprot:Q9M9S3
Length = 263
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 164/226 (72%), Positives = 198/226 (87%)
Query: 43 KKKKLY-VKCRQSEYYEQKXXXXXXXXXXYAPTDVAVGTLPTRVYVGHSIYKGKAALTVE 101
K KL+ VK RQ++Y+E++ +P+ A G LP R YVGHSIYKGKAALTV+
Sbjct: 44 KTVKLFSVKSRQTDYFEKQRFGDSSS----SPSP-AEG-LPARFYVGHSIYKGKAALTVD 97
Query: 102 PRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARE 161
PR PEFV+LDSGA KLS++GF++LQFAP+AGVRQYDWS+KQVFSLSVTEIG+LV+LG RE
Sbjct: 98 PRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRE 157
Query: 162 SCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYT 221
SCEFFHDPFKGKS+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL+N+DESIYIP+TRAE+
Sbjct: 158 SCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFA 217
Query: 222 VLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
VL+SAFNF+LPYL+GWHA+A++I+ ++T+R NNA+P YGGDYEWNR
Sbjct: 218 VLISAFNFVLPYLIGWHAFANSIKPEETSRVNNASPNYGGDYEWNR 263
>TAIR|locus:2058822 [details] [associations]
symbol:WHY3 "AT2G02740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0006952 "defense response"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IMP] InterPro:IPR009044
GO:GO:0009570 EMBL:CP002685 GO:GO:0006952 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 EMBL:AC002521
Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508 UniGene:At.41460
UniGene:At.66386 ProtClustDB:CLSN2682942 InterPro:IPR013742
Pfam:PF08536 EMBL:BT015336 EMBL:BT015641 EMBL:AK230205
IPI:IPI00545671 PIR:T00854 RefSeq:NP_001077872.1 RefSeq:NP_178377.2
ProteinModelPortal:Q66GR6 SMR:Q66GR6 STRING:Q66GR6 PRIDE:Q66GR6
EnsemblPlants:AT2G02740.1 GeneID:814803 KEGG:ath:AT2G02740
TAIR:At2g02740 InParanoid:Q66GR6 OMA:GDYEWSR PhylomeDB:Q66GR6
Genevestigator:Q66GR6 Uniprot:Q66GR6
Length = 268
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 163/248 (65%), Positives = 202/248 (81%)
Query: 21 HSLSNSKGNGFGSISVTESTSIKKKKLYVKCRQSEYYEQKXXXXXXXXXXYAPTDVAVGT 80
HS+ S G G I + T+ + KL VK RQS+Y+E++ + V +
Sbjct: 31 HSILTSGGFA-GKIIPLKPTA--RLKLTVKSRQSDYFEKQRFGDSSSSQ-----NAEVSS 82
Query: 81 LPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSR 140
P R YVGHSIYKGKAALT+EPR PEFV+L+SGA KL++EGF++LQFAPAAGVRQYDWSR
Sbjct: 83 -P-RFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSR 140
Query: 141 KQVFSLSVTEIGSLVALGARESCEFFHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFFNLS 199
KQVFSLSVTEIG+LV+LG RESCEFFHDPFKGK S+EGKVRKVLKVEPLPDGSG FFNLS
Sbjct: 141 KQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLS 200
Query: 200 VQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRY 259
VQNKL+N+DES+YIP+T+AE+ VL+SAFNF+LP+L+GW A+A++I+ +D+ R NNA+P+Y
Sbjct: 201 VQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKY 260
Query: 260 GGDYEWNR 267
GGDYEW+R
Sbjct: 261 GGDYEWSR 268
>UNIPROTKB|Q9LL85 [details] [associations]
symbol:WHY1 "Single-stranded DNA-bindig protein WHY1,
chloroplastic" species:4113 "Solanum tuberosum" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0050832 "defense response to
fungus" evidence=TAS] InterPro:IPR009044 GO:GO:0005634
GO:GO:0009507 GO:GO:0045893 GO:GO:0050832 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 Gene3D:2.30.31.10 SUPFAM:SSF54447
InterPro:IPR013742 Pfam:PF08536 EMBL:AF233342 PDB:1L3A PDBsum:1L3A
ProteinModelPortal:Q9LL85 SMR:Q9LL85 EvolutionaryTrace:Q9LL85
Uniprot:Q9LL85
Length = 274
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 158/248 (63%), Positives = 191/248 (77%)
Query: 20 FHSLSNSKGNGFGSISVTESTSIKKKKLYVKCRQSEYYEQKXXXXXXXXXXYAPTDVAVG 79
F LS++ F + T ++ + L + CR S+Y+E + P G
Sbjct: 37 FAPLSSNTTKSFSGL--THKAALPRN-LSLTCRHSDYFEPQQQQQQQQQQ---PQ----G 86
Query: 80 TLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWS 139
+V+VG+SIYKGKAALTVEPR PEF LDSGA KLSREG VMLQFAPAAGVRQYDWS
Sbjct: 87 ASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWS 146
Query: 140 RKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLS 199
RKQVFSLSVTEIGS+++LGA++SCEFFHDP KG+S+EG+VRKVLKVEPLPDGSGHFFNLS
Sbjct: 147 RKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLS 206
Query: 200 VQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRY 259
VQNKLINLDE+IYIPVT+AE+ VLVSAFNF++PYLLGWH ++ + +D +R+NNANPR
Sbjct: 207 VQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNANPRS 266
Query: 260 GGDYEWNR 267
G + EWNR
Sbjct: 267 GAELEWNR 274
>UNIPROTKB|B2LXS7 [details] [associations]
symbol:WHY1 "Single-stranded DNA-bindig protein WHY1,
chloroplastic" species:4577 "Zea mays" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] InterPro:IPR009044
GO:GO:0005634 GO:GO:0009570 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0003723 GO:GO:0032211 GO:GO:0042162
GO:GO:0045910 Gene3D:2.30.31.10 SUPFAM:SSF54447 GO:GO:0009508
HOGENOM:HOG000006196 OMA:VDESIYI InterPro:IPR013742 Pfam:PF08536
EMBL:EU595664 EMBL:EU955861 EMBL:BT043360 RefSeq:NP_001123589.1
UniGene:Zm.88681 PRIDE:B2LXS7 GeneID:100170235
KEGG:dosa:Os06t0145800-00 KEGG:zma:100170235 Gramene:B2LXS7
MaizeGDB:1233241 Uniprot:B2LXS7
Length = 266
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 123/217 (56%), Positives = 162/217 (74%)
Query: 52 RQSEYYEQKXXXXXXXXXXYA-PTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSL 110
R S+Y++ + Y P + G RV+ +SIYKGKAAL+ +PR P FV L
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYGRPPN---GAQDGRVFTSYSIYKGKAALSFDPRPPLFVPL 111
Query: 111 DSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPF 170
DSGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV EIG+L+ LG +SCEFFHDPF
Sbjct: 112 DSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPF 171
Query: 171 KGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFI 230
KG+SEEGKVRKVLK+EP PDG+G FFNLSVQN+LIN+DESIYIP+T+ E+ V+VS FN+I
Sbjct: 172 KGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYI 231
Query: 231 LPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
+P+L+GW + S+I+ +++ + P+ +YEW R
Sbjct: 232 IPHLMGWSTFVSSIKPEESRPYSR--PQSTSEYEWRR 266
>UNIPROTKB|D9J034 [details] [associations]
symbol:WHY2 "Single-stranded DNA-bindig protein WHY2,
mitochondrial" species:4113 "Solanum tuberosum" [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR009044 GO:GO:0005739
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 Gene3D:2.30.31.10
SUPFAM:SSF54447 InterPro:IPR013742 Pfam:PF08536 EMBL:HM234504
PDB:3N1H PDB:3N1I PDB:3N1J PDB:3N1K PDB:3N1L PDB:3R9Y PDB:3R9Z
PDB:3RA0 PDBsum:3N1H PDBsum:3N1I PDBsum:3N1J PDBsum:3N1K
PDBsum:3N1L PDBsum:3R9Y PDBsum:3R9Z PDBsum:3RA0 Uniprot:D9J034
Length = 238
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 88/223 (39%), Positives = 133/223 (59%)
Query: 45 KKLYVKCRQSEYYEQKXXXXXXXXXXYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRG 104
KKL +C + ++ G RV+ +S++KGKAAL+ EPR
Sbjct: 17 KKLPGECVKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSAEPRL 76
Query: 105 PEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCE 164
P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+F+LS TE+GSL+++G R+S E
Sbjct: 77 PTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISMGTRDSSE 136
Query: 165 FFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FFHDP S G+VRK L ++P DGSG+F +LSV N + ++ +PVT AE+ V+
Sbjct: 137 FFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMR 196
Query: 225 SAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
+AF+F LP+++GW + + + + P+ + EW+R
Sbjct: 197 TAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQLM-EAEWDR 238
>TAIR|locus:2032293 [details] [associations]
symbol:ATWHY2 "WHIRLY 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006952 "defense
response" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] InterPro:IPR009044
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0006952
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 EMBL:AC016162
UniGene:At.28009 UniGene:At.35209 Gene3D:2.30.31.10 SUPFAM:SSF54447
HSSP:Q9LL85 HOGENOM:HOG000006196 InterPro:IPR013742 Pfam:PF08536
EMBL:AB493532 EMBL:AY072110 EMBL:AY122961 IPI:IPI00517288
PIR:C96737 RefSeq:NP_177282.2 ProteinModelPortal:Q8VYF7 SMR:Q8VYF7
STRING:Q8VYF7 PRIDE:Q8VYF7 EnsemblPlants:AT1G71260.1 GeneID:843467
KEGG:ath:AT1G71260 TAIR:At1g71260 InParanoid:Q8VYF7 OMA:KAEFAVM
PhylomeDB:Q8VYF7 ProtClustDB:CLSN2690488 Genevestigator:Q8VYF7
Uniprot:Q8VYF7
Length = 238
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 79/186 (42%), Positives = 126/186 (67%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R++ +SI+KGKAAL+VEP P F +DSG +++ R G +M+ F PA G R+YDW +KQ
Sbjct: 53 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 112
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G+++S EFFHDP S G+VRK L V+P DGSG+F +LSV N
Sbjct: 113 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNS 172
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGG-- 261
++ ++ +PVT+AE+ V+ +AF+F LP+++GW+ + + N ++ +
Sbjct: 173 ILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGHVNTEALPSRNVSHLKTEPQL 232
Query: 262 DYEWNR 267
+ EW++
Sbjct: 233 ELEWDK 238
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 267 257 0.00086 114 3 11 22 0.47 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 597 (63 KB)
Total size of DFA: 195 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.19u 0.09s 21.28t Elapsed: 00:00:02
Total cpu time: 21.19u 0.09s 21.28t Elapsed: 00:00:02
Start: Fri May 10 08:33:46 2013 End: Fri May 10 08:33:48 2013