BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024467
(267 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302399111|gb|ADL36850.1| WHY domain class transcription factor [Malus x domestica]
Length = 276
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/276 (66%), Positives = 217/276 (78%), Gaps = 10/276 (3%)
Query: 2 MLQLQCLSS----QTLNPKLCPFHS---LSNSKGNGFGSISVTESTSIKKKKLYVKCRQS 54
ML+L LSS Q N F S LS ++ + S + +K+L +KCRQS
Sbjct: 1 MLRLHLLSSPATAQKPNQNPSQFLSSQLLSRARVFSTNTFGFAPSPILSRKRLSLKCRQS 60
Query: 55 EYYEQK--SFSASPSNSSYAPTDVAVGT-LPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
EY++Q+ S +ASP+ S AP A T + R YVGHSIYKGKAALTVEP+ PEF LD
Sbjct: 61 EYFDQQRTSTAASPNKPSPAPPTPAGATGMAPRFYVGHSIYKGKAALTVEPKAPEFTPLD 120
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFK 171
SGA KLSREGFV+LQFAPAAGVR YDWSRKQVFSLSVTEIGSLV+LG++ES EFFHDPFK
Sbjct: 121 SGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVSLGSKESLEFFHDPFK 180
Query: 172 GKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFIL 231
GKS+EGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIP+TRAE+ VL SAFNFIL
Sbjct: 181 GKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPITRAEFAVLKSAFNFIL 240
Query: 232 PYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
PY+LGWHAYA++I+ +D++R NN+ +YGGD+EW+R
Sbjct: 241 PYILGWHAYANSIKPEDSSRANNSGLKYGGDFEWSR 276
>gi|225424922|ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
gi|296086421|emb|CBI32010.3| unnamed protein product [Vitis vinifera]
Length = 268
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 183/275 (66%), Positives = 221/275 (80%), Gaps = 16/275 (5%)
Query: 2 MLQLQCLSSQ--TLNPKLCPFHSLSNSKGNGFGSIS-----VTESTSIKKKKLYVKCRQS 54
M L LSS NP+LCP HSLS+ + S + + +T +KK ++CRQS
Sbjct: 1 MHHLHLLSSSFTIQNPRLCPNHSLSSLHSSSPLSFTSRTPLLLSTTRHFRKKRSLQCRQS 60
Query: 55 EYYEQKSFS--ASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDS 112
+Y++Q++ + P++SS+ G L RV+VGHSIYKGKAALTVEP+ PEF LDS
Sbjct: 61 DYFQQQNITRRQPPNDSSFG------GALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDS 114
Query: 113 GAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKG 172
GA K+S+EGFV+LQFAPAAGVRQYDW RKQVFSLSVTEIGSL++LGARESCEFFHDPFKG
Sbjct: 115 GAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKG 174
Query: 173 KSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILP 232
+SEEGKVRKVLKVEPLPDGSGHFFNLSVQNKL+N+DE+IYIPVTRAE+ VL+SAFNFI+P
Sbjct: 175 RSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVP 234
Query: 233 YLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
YLLGWHAYA++I+ DDT+R NNANPR GD+EW+R
Sbjct: 235 YLLGWHAYANSIKPDDTSRVNNANPR-SGDFEWSR 268
>gi|15223748|ref|NP_172893.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
gi|75191428|sp|Q9M9S3.1|WHY1_ARATH RecName: Full=Single-stranded DNA-binding protein WHY1,
chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 1; AltName: Full=Protein WHIRLY
1; Short=AtWHY1; Flags: Precursor
gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC002521.2. EST gb|AI995686 comes from this
gene [Arabidopsis thaliana]
gi|12083312|gb|AAG48815.1|AF332452_1 putative DNA-binding protein p24 [Arabidopsis thaliana]
gi|13877787|gb|AAK43971.1|AF370156_1 putative DNA-binding protein p24 [Arabidopsis thaliana]
gi|16323418|gb|AAL15203.1| putative DNA-binding protein p24 [Arabidopsis thaliana]
gi|332191039|gb|AEE29160.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
Length = 263
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/228 (72%), Positives = 200/228 (87%), Gaps = 7/228 (3%)
Query: 41 SIKKKKLY-VKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALT 99
+ K KL+ VK RQ++Y+E++ F S S+ S A LP R YVGHSIYKGKAALT
Sbjct: 42 TTKTVKLFSVKSRQTDYFEKQRFGDSSSSPSPAEG------LPARFYVGHSIYKGKAALT 95
Query: 100 VEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGA 159
V+PR PEFV+LDSGA KLS++GF++LQFAP+AGVRQYDWS+KQVFSLSVTEIG+LV+LG
Sbjct: 96 VDPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGP 155
Query: 160 RESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAE 219
RESCEFFHDPFKGKS+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL+N+DESIYIP+TRAE
Sbjct: 156 RESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAE 215
Query: 220 YTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
+ VL+SAFNF+LPYL+GWHA+A++I+ ++T+R NNA+P YGGDYEWNR
Sbjct: 216 FAVLISAFNFVLPYLIGWHAFANSIKPEETSRVNNASPNYGGDYEWNR 263
>gi|224099743|ref|XP_002311601.1| predicted protein [Populus trichocarpa]
gi|118485247|gb|ABK94483.1| unknown [Populus trichocarpa]
gi|222851421|gb|EEE88968.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 182/273 (66%), Positives = 217/273 (79%), Gaps = 15/273 (5%)
Query: 2 MLQLQCLS---SQTLNPKLC--PFHSLSNSKGNGFGSISVTESTSI--KKKKLYVKCRQS 54
MLQL +S S NPKL ++SL ++K SIS+ TS KKK L VKC
Sbjct: 1 MLQLNSVSRVSSSPQNPKLWLPQYNSLCSTK-----SISLNSKTSSTEKKKTLGVKC--- 52
Query: 55 EYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGA 114
+YY+Q+ + + S+ S + VG P +V+VGHSIYKGKAALTVEPR PEF LDSGA
Sbjct: 53 QYYDQQHKTFTTSSRSSPSSAPPVGESPPKVFVGHSIYKGKAALTVEPRSPEFSPLDSGA 112
Query: 115 VKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKS 174
KL +EGFV+LQFAPAA VRQYDW+RKQVFSLSVTEIG LV+L A+ SCEFFHDP KGKS
Sbjct: 113 YKLVKEGFVLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKS 172
Query: 175 EEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYL 234
+EGKVRK+LKVEPLPDGSGHFFNLSVQNK++N+DE+IYIPVT+AEYTVL SAFN+ILPYL
Sbjct: 173 DEGKVRKLLKVEPLPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFNYILPYL 232
Query: 235 LGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
LGWHAYA++I+ DD++R NNA+PRYGGDYEW+R
Sbjct: 233 LGWHAYANSIKPDDSSRGNNASPRYGGDYEWSR 265
>gi|297849846|ref|XP_002892804.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyrata]
gi|297338646|gb|EFH69063.1| ATWHY1/PTAC1 [Arabidopsis lyrata subsp. lyrata]
Length = 264
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 200/228 (87%), Gaps = 6/228 (2%)
Query: 41 SIKKKKLY-VKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALT 99
+ K KL+ VK RQ++Y+E++ F +SS + + A G LP R YVGHSIYKGKAALT
Sbjct: 42 TTKTVKLFSVKSRQTDYFEKQRFG----DSSSSSSQNAEG-LPARFYVGHSIYKGKAALT 96
Query: 100 VEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGA 159
+EPR PEFV+LDSGA KLS++GF++LQFAP+AGVRQYDWS+KQVFSLSVTEIG+LV+LG
Sbjct: 97 MEPRAPEFVALDSGAFKLSKDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGP 156
Query: 160 RESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAE 219
RESCEFFHDPFKGKS+EGKVRKVLKVEPLPDGSGHFFNLSVQNKL+N+DESIYIP+TRAE
Sbjct: 157 RESCEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAE 216
Query: 220 YTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
+ VL+SAFNF+LPYL+GWHA+A++I+ +DT R NNA P YGGDYEWNR
Sbjct: 217 FAVLISAFNFVLPYLIGWHAFANSIKPEDTNRANNAPPNYGGDYEWNR 264
>gi|255558202|ref|XP_002520128.1| conserved hypothetical protein [Ricinus communis]
gi|223540620|gb|EEF42183.1| conserved hypothetical protein [Ricinus communis]
Length = 271
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 172/268 (64%), Positives = 211/268 (78%), Gaps = 13/268 (4%)
Query: 10 SQTLNPKLCPFHSLSNSKGNGFGSISVTESTSIKKK-----KLYVKCRQSEYYEQKSFSA 64
+ T NPKL ++ S+ + S + + S ++ VKCRQSE+Y+Q+
Sbjct: 7 TSTQNPKLWTPNTFSSLQSFRTTSTTFIHTISAPRRLSTNTNRAVKCRQSEFYDQQQQKY 66
Query: 65 SPS-----NSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSR 119
+PS +SS+A A +P RVYVGHSIYKGKAALTVEPR PEF +LDSGA K++R
Sbjct: 67 NPSRPSSNDSSFASQSPAA--VP-RVYVGHSIYKGKAALTVEPRAPEFAALDSGAFKVAR 123
Query: 120 EGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKV 179
EGFV+LQFAPAAGVRQYDWSRKQVFSLSVTEIG++++LGAR+SCEFFHDP KGKS+EGK+
Sbjct: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTIISLGARDSCEFFHDPNKGKSDEGKI 183
Query: 180 RKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHA 239
RKVLKVEPLPDGSGHFFNLSVQNK +N+DESIYIPVT+AE+ VL+SAFN+ILPYLLGWH
Sbjct: 184 RKVLKVEPLPDGSGHFFNLSVQNKPMNMDESIYIPVTKAEFAVLISAFNYILPYLLGWHT 243
Query: 240 YASTIRADDTARTNNANPRYGGDYEWNR 267
+A++I+ D NNANPR+GGDYEW+R
Sbjct: 244 FANSIKPDLNGHMNNANPRFGGDYEWSR 271
>gi|449520335|ref|XP_004167189.1| PREDICTED: single-stranded DNA-binding protein WHY1,
chloroplastic-like [Cucumis sativus]
Length = 276
Score = 350 bits (897), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/278 (64%), Positives = 212/278 (76%), Gaps = 14/278 (5%)
Query: 2 MLQLQCLSSQ---TLNPKLCPFHSLSNSKGNGFGSISVTESTSIKKKKLYVKCRQS---E 55
ML+LQ LSS T NP+L P +LSN + + S T +K KC+ S +
Sbjct: 1 MLRLQWLSSSFLPTFNPELSP-ETLSNPRLCTL-NFSRPLPTLTTTRKPTPKCQYSWNTQ 58
Query: 56 YYEQKSFSASPSNSSYAPTD-----VAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSL 110
++Q +F +P S +P A LP R +VGHSIYKGKAALTVEPR PEF L
Sbjct: 59 QHQQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPL 118
Query: 111 DSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPF 170
DSGA K+SREG VMLQFAPAAGVRQYDWSRKQVFSLSVTE+GSL+ALG RE+CEFFHDP+
Sbjct: 119 DSGAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPY 178
Query: 171 KGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFI 230
KGKS+EGKVRK+LKVEPLPDGSGHFFNL+VQNKLIN+DESIYIP+T+AEYTVLV AF FI
Sbjct: 179 KGKSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFI 238
Query: 231 LPYLLGWHAYASTI-RADDTARTNNANPRYGGDYEWNR 267
LP+L+GWH A+T+ + +D++R N ANPRYGGD+EWNR
Sbjct: 239 LPHLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR 276
>gi|145328252|ref|NP_001077872.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
gi|330250525|gb|AEC05619.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
Length = 267
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 192/222 (86%), Gaps = 7/222 (3%)
Query: 46 KLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
KL VK RQS+Y+E++ F S S+ + + R YVGHSIYKGKAALT+EPR P
Sbjct: 53 KLTVKSRQSDYFEKQRFGDSSSSQNAEVSS-------PRFYVGHSIYKGKAALTIEPRAP 105
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EFV+L+SGA KL++EGF++LQFAPAAGVRQYDWSRKQVFSLSVTEIG+LV+LG RESCEF
Sbjct: 106 EFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEF 165
Query: 166 FHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVS 225
FHDPFKGK +EGKVRKVLKVEPLPDGSG FFNLSVQNKL+N+DES+YIP+T+AE+ VL+S
Sbjct: 166 FHDPFKGKGDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLIS 225
Query: 226 AFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
AFNF+LP+L+GW A+A++I+ +D+ R NNA+P+YGGDYEW+R
Sbjct: 226 AFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKYGGDYEWSR 267
>gi|297814520|ref|XP_002875143.1| ATWHY3/PTAC11 [Arabidopsis lyrata subsp. lyrata]
gi|297320981|gb|EFH51402.1| ATWHY3/PTAC11 [Arabidopsis lyrata subsp. lyrata]
Length = 268
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/227 (70%), Positives = 196/227 (86%), Gaps = 8/227 (3%)
Query: 42 IKKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVE 101
+ + KL VK RQ +Y+E++ F S S+ + A G+ P R YVGHSIYKGKAALT+E
Sbjct: 49 MARLKLSVKSRQDDYFEKQRFGDSSSSQN------AEGSSP-RFYVGHSIYKGKAALTIE 101
Query: 102 PRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARE 161
PR PEFV+L+SGA KL++EGF++LQFAPAAGVRQYDWSRKQVFSLSVTEIG+LV+LG RE
Sbjct: 102 PRAPEFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRE 161
Query: 162 SCEFFHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEY 220
SCEFFHDPFKGK S+EGKVRKVLKVEPLPDGSG FFNLSVQNKL+N+DES+YIP+T+AE+
Sbjct: 162 SCEFFHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEF 221
Query: 221 TVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
VL+SAFNFILP+L+GW A+A++I+ +D R NNA+P+YGGDYEW+R
Sbjct: 222 AVLISAFNFILPHLIGWSAFANSIKPEDANRLNNASPKYGGDYEWSR 268
>gi|388509172|gb|AFK42652.1| unknown [Lotus japonicus]
Length = 261
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/222 (69%), Positives = 187/222 (84%), Gaps = 7/222 (3%)
Query: 49 VKCRQSEYYEQKSFSAS---PSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
++CR S+ ++QK+FS+S P+N P V+VG LP RVYVGHSIYKGKAALTV PR P
Sbjct: 44 IRCRHSDLFDQKTFSSSTPQPAN----PAAVSVGALPPRVYVGHSIYKGKAALTVTPRPP 99
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EF LDSGA K+SREG+V+LQFAPA RQYDW+RKQVFSLSV E+GS+++LG RESCEF
Sbjct: 100 EFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESCEF 159
Query: 166 FHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVS 225
FHDP KGKS+EGKVRKVLK+EPLPDGSGHFFNLSVQNK++N+DE+IYIPVT+AE VL S
Sbjct: 160 FHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVLSS 219
Query: 226 AFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
FNFI+PY LGWH +A+++ + ++ NNANPRYGGDYEWNR
Sbjct: 220 IFNFIMPYPLGWHTFANSVNPEYSSGVNNANPRYGGDYEWNR 261
>gi|42568881|ref|NP_178377.2| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
gi|75115367|sp|Q66GR6.1|WHY3_ARATH RecName: Full=Single-stranded DNA-binding protein WHY3,
chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 11; AltName: Full=Protein
WHIRLY 3; Short=AtWHY3; Flags: Precursor
gi|51536442|gb|AAU05459.1| At2g02740 [Arabidopsis thaliana]
gi|51972072|gb|AAU15140.1| At2g02740 [Arabidopsis thaliana]
gi|330250524|gb|AEC05618.1| ssDNA-binding transcriptional regulator [Arabidopsis thaliana]
Length = 268
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/223 (70%), Positives = 193/223 (86%), Gaps = 8/223 (3%)
Query: 46 KLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
KL VK RQS+Y+E++ F S S+ + + R YVGHSIYKGKAALT+EPR P
Sbjct: 53 KLTVKSRQSDYFEKQRFGDSSSSQNAEVSS-------PRFYVGHSIYKGKAALTIEPRAP 105
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EFV+L+SGA KL++EGF++LQFAPAAGVRQYDWSRKQVFSLSVTEIG+LV+LG RESCEF
Sbjct: 106 EFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEF 165
Query: 166 FHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FHDPFKGK S+EGKVRKVLKVEPLPDGSG FFNLSVQNKL+N+DES+YIP+T+AE+ VL+
Sbjct: 166 FHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLI 225
Query: 225 SAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
SAFNF+LP+L+GW A+A++I+ +D+ R NNA+P+YGGDYEW+R
Sbjct: 226 SAFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKYGGDYEWSR 268
>gi|110740230|dbj|BAF02013.1| hypothetical protein [Arabidopsis thaliana]
Length = 268
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 155/223 (69%), Positives = 193/223 (86%), Gaps = 8/223 (3%)
Query: 46 KLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
KL VK RQS+Y+E++ F S S+ + + R YVGHSIYKGKAALT+EPR P
Sbjct: 53 KLTVKSRQSDYFEKQRFGDSSSSQNAEVSS-------PRFYVGHSIYKGKAALTIEPRAP 105
Query: 106 EFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEF 165
EFV+L+SGA KL++EGF++LQFAPAAGVRQYDWS+K+VFSLSVTEIG+LV+LG RESCEF
Sbjct: 106 EFVALESGAFKLTKEGFLLLQFAPAAGVRQYDWSKKRVFSLSVTEIGNLVSLGPRESCEF 165
Query: 166 FHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FHDPFKGK S+EGKVRKVLKVEPLPDGSG FFNLSVQNKL+N+DES+YIP+T+AE+ VL+
Sbjct: 166 FHDPFKGKGSDEGKVRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLI 225
Query: 225 SAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
SAFNF+LP+L+GW A+A++I+ +D+ R NNA+P+YGGDYEW+R
Sbjct: 226 SAFNFVLPHLIGWSAFANSIKPEDSNRLNNASPKYGGDYEWSR 268
>gi|75174555|sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY1,
chloroplastic; AltName: Full=DNA-binding protein p24;
AltName: Full=PR-10a binding factor 2; Short=PBF-2;
AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
Precursor
gi|9651810|gb|AAF91282.1|AF233342_1 DNA-binding protein p24 [Solanum tuberosum]
Length = 274
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 192/262 (73%), Gaps = 15/262 (5%)
Query: 14 NPKLCPFHSLSNSKGNGFGSISVTESTSIK--------KKKLYVKCRQSEYYEQKSFSAS 65
NP + S S+S F +S + S + L + CR S+Y+E +
Sbjct: 20 NPTKTSYLSFSSSINTIFAPLSSNTTKSFSGLTHKAALPRNLSLTCRHSDYFEPQQ---- 75
Query: 66 PSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVML 125
G +V+VG+SIYKGKAALTVEPR PEF LDSGA KLSREG VML
Sbjct: 76 ---QQQQQQQQPQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVML 132
Query: 126 QFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKV 185
QFAPAAGVRQYDWSRKQVFSLSVTEIGS+++LGA++SCEFFHDP KG+S+EG+VRKVLKV
Sbjct: 133 QFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSDEGRVRKVLKV 192
Query: 186 EPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIR 245
EPLPDGSGHFFNLSVQNKLINLDE+IYIPVT+AE+ VLVSAFNF++PYLLGWH ++ +
Sbjct: 193 EPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFK 252
Query: 246 ADDTARTNNANPRYGGDYEWNR 267
+D +R+NNANPR G + EWNR
Sbjct: 253 PEDASRSNNANPRSGAELEWNR 274
>gi|224111254|ref|XP_002315793.1| predicted protein [Populus trichocarpa]
gi|222864833|gb|EEF01964.1| predicted protein [Populus trichocarpa]
Length = 191
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/191 (78%), Positives = 172/191 (90%), Gaps = 2/191 (1%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G P +V+VGHSIYKGKAALT+EPR PEF L+SGA KL +EGFV+ QFAPA+ RQYDW
Sbjct: 1 GESPPKVFVGHSIYKGKAALTIEPRAPEFSPLESGAYKLVKEGFVLSQFAPASSARQYDW 60
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
+RKQVFSLSVTEIG LV+LGAR+SCEFFHDP KG+SEEGKVRKVLKVEPLPDGSGHFFNL
Sbjct: 61 TRKQVFSLSVTEIGHLVSLGARDSCEFFHDPNKGRSEEGKVRKVLKVEPLPDGSGHFFNL 120
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAY--ASTIRADDTARTNNAN 256
SVQNK +N+DESIYIPVTRAEYTVL+SAFN+ILPYLLGWHAY A++I++ D++R NN N
Sbjct: 121 SVQNKALNIDESIYIPVTRAEYTVLISAFNYILPYLLGWHAYANANSIKSADSSRENNVN 180
Query: 257 PRYGGDYEWNR 267
PRYGGDY+WNR
Sbjct: 181 PRYGGDYDWNR 191
>gi|157878742|pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
gi|157878743|pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
gi|157878744|pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
gi|157878745|pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 227
Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 144/188 (76%), Positives = 167/188 (88%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G +V+VG+SIYKGKAALTVEPR PEF LDSGA KLSREG VMLQFAPAAGVRQYDW
Sbjct: 32 GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDW 91
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
SRKQVFSLSVTEIGS+++LG ++SCEFFHDP KG+S+EG+VRKVLKVEPLPDGSGHFFNL
Sbjct: 92 SRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNL 151
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPR 258
SVQNKLINLDE+IYIPVT+AE+ VLVSAFNF++PYLLGWH ++ + +D +R+NNANPR
Sbjct: 152 SVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNANPR 211
Query: 259 YGGDYEWN 266
G + EWN
Sbjct: 212 SGAELEWN 219
>gi|295913588|gb|ADG58040.1| transcription factor [Lycoris longituba]
Length = 246
Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 3/202 (1%)
Query: 43 KKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEP 102
KK+ L + CR S Y++Q+ S+S S + + + RV+VG+SIYKGKAALTVEP
Sbjct: 48 KKQNLPISCRSSNYFDQQRLSSSSSTPPSPSSQPSSQS---RVFVGYSIYKGKAALTVEP 104
Query: 103 RGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARES 162
R PEF LDSGA K+++EGF++LQFAPA G+RQYDWSRKQVFSLSV EIG+L++LGA+ES
Sbjct: 105 RAPEFAPLDSGAFKVAKEGFILLQFAPAVGMRQYDWSRKQVFSLSVVEIGTLMSLGAKES 164
Query: 163 CEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTV 222
CEFFHDPFKG+SEEGKVRK+LK EPLPDG+GHFFNLSVQN+L+N+DESIYIP+++AE+ V
Sbjct: 165 CEFFHDPFKGRSEEGKVRKLLKAEPLPDGTGHFFNLSVQNRLLNVDESIYIPISKAEFAV 224
Query: 223 LVSAFNFILPYLLGWHAYASTI 244
L S FNFILP+LLGW A+A+TI
Sbjct: 225 LNSTFNFILPHLLGWQAFANTI 246
>gi|356567550|ref|XP_003551981.1| PREDICTED: uncharacterized protein LOC100804480 [Glycine max]
Length = 235
Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 128/191 (67%), Positives = 159/191 (83%), Gaps = 3/191 (1%)
Query: 45 KKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRG 104
K ++CR S+ ++Q + +++P + +VG LP RVYVG+SIYKGKAALT+ PR
Sbjct: 48 KPFSLRCRHSDLFDQNTLASTPRPTR---PSASVGALPPRVYVGYSIYKGKAALTLTPRP 104
Query: 105 PEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCE 164
PEF+ LDSGA K+S+EG+V+LQFAPA G RQYDW+RKQVFSLSV E+GS+++LGAR+S E
Sbjct: 105 PEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYE 164
Query: 165 FFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FFHDPFKGKS+EGKVRK+LKVEPLPDGSGHFFNLSVQNKL+N+DESIYIPVT+AE VL
Sbjct: 165 FFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLT 224
Query: 225 SAFNFILPYLL 235
S F I+PYL+
Sbjct: 225 STFKIIIPYLV 235
>gi|242091954|ref|XP_002436467.1| hypothetical protein SORBIDRAFT_10g003170 [Sorghum bicolor]
gi|241914690|gb|EER87834.1| hypothetical protein SORBIDRAFT_10g003170 [Sorghum bicolor]
Length = 266
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/184 (64%), Positives = 153/184 (83%), Gaps = 2/184 (1%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +SIYKGKAAL+ +PR P+FV LDSGA K+++EGFV+LQFAPA RQYDW+RKQV
Sbjct: 85 RVFTSYSIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
FSLSV EIG+L+ LG +SCEFFHDPFKG+SEEGKVRKVLKVEP PDG+G FFNLSVQN+
Sbjct: 145 FSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKVEPTPDGNGRFFNLSVQNR 204
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
LIN+DESIYIP+T+ E+ V+VS FN+I+P+L+GW +AS+I+ +++ + P+ +Y
Sbjct: 205 LINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFASSIKPEESRLY--SRPQSTSEY 262
Query: 264 EWNR 267
EW R
Sbjct: 263 EWRR 266
>gi|194306593|ref|NP_001123589.1| LOC100170235 [Zea mays]
gi|426021717|sp|B2LXS7.1|WHY1_MAIZE RecName: Full=Single-stranded DNA-bindig protein WHY1,
chloroplastic; AltName: Full=Protein WHIRLY 1;
Short=ZmWHY1; Flags: Precursor
gi|183229934|gb|ACC60344.1| Whirly family nucleic acid binding protein [Zea mays]
gi|194708562|gb|ACF88365.1| unknown [Zea mays]
gi|195612298|gb|ACG27979.1| DNA-binding protein p24 [Zea mays]
gi|408690350|gb|AFU81635.1| WHIRLY-type transcription factor, partial [Zea mays subsp. mays]
gi|413942843|gb|AFW75492.1| whirly1 [Zea mays]
Length = 266
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 162/216 (75%), Gaps = 4/216 (1%)
Query: 52 RQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
R S+Y++ ++ + Y G RV+ +SIYKGKAAL+ +PR P FV LD
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYG--RPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLD 112
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFK 171
SGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV EIG+L+ LG +SCEFFHDPFK
Sbjct: 113 SGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFK 172
Query: 172 GKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFIL 231
G+SEEGKVRKVLK+EP PDG+G FFNLSVQN+LIN+DESIYIP+T+ E+ V+VS FN+I+
Sbjct: 173 GRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYII 232
Query: 232 PYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
P+L+GW + S+I+ +++ + P+ +YEW R
Sbjct: 233 PHLMGWSTFVSSIKPEES--RPYSRPQSTSEYEWRR 266
>gi|357486629|ref|XP_003613602.1| DNA-binding protein p24 [Medicago truncatula]
gi|355514937|gb|AES96560.1| DNA-binding protein p24 [Medicago truncatula]
Length = 261
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/273 (52%), Positives = 180/273 (65%), Gaps = 21/273 (7%)
Query: 2 MLQLQCLSS-QTLNPKLCPFHSLSNSKGNGFGSISVTESTSIKKKKL----YVKCRQSE- 55
MLQLQ S T NP P HS I T SI +++ + C E
Sbjct: 3 MLQLQPPQSYTTTNPFSVPTHSF----------IINTPKKSIFLRRVGPTFSLTCHHPEL 52
Query: 56 YYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAV 115
++ + SS + +VG LP RV+V S+YKGKA L V P P+F S DSG
Sbjct: 53 FHPKPFPPPQRPQSSSSSFSSSVGELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTF 112
Query: 116 KLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSE 175
K+S+EG ++LQF P+AG RQYDW+RKQVFSLSV E+G+L+ LGARESCE FHDPF G+S+
Sbjct: 113 KISKEGLMLLQFVPSAGFRQYDWNRKQVFSLSVDEMGNLINLGARESCEIFHDPFMGRSD 172
Query: 176 EGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLL 235
EGKVRKVLKVEPL DGSGH F LSVQN+L N+DE+I+IPVT+AE+ V S F+FI+PYLL
Sbjct: 173 EGKVRKVLKVEPLHDGSGHMFKLSVQNQLKNIDENIFIPVTKAEFAVFNSLFSFIMPYLL 232
Query: 236 GWHAYASTIRADDTARTNNANP-RYGGDYEWNR 267
GW+A+A +I+ + N ANP R D+EWNR
Sbjct: 233 GWNAFADSIKPE----VNIANPRRREEDFEWNR 261
>gi|55296373|dbj|BAD68418.1| putative DNA-binding protein p24 [Oryza sativa Japonica Group]
gi|55297130|dbj|BAD68773.1| putative DNA-binding protein p24 [Oryza sativa Japonica Group]
gi|222634946|gb|EEE65078.1| hypothetical protein OsJ_20114 [Oryza sativa Japonica Group]
Length = 272
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 156/198 (78%), Gaps = 2/198 (1%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAP 129
+Y+P G RV+ +SIYKGKAA++++PR P+FV LDSGA K+ +EGFV+LQFAP
Sbjct: 77 AYSPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAP 136
Query: 130 AAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLP 189
A RQYDW+RKQVFSLSV E+GSL+ LG +SCEFFHDPFKG+S+EGKVRKVLKVEP P
Sbjct: 137 AVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVLKVEPTP 196
Query: 190 DGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDT 249
DG+ FFNLSVQN+L+N+DE+IYIP+T+ E+ V+VS FN+I+P+L+GW + ++I+ +D+
Sbjct: 197 DGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHLMGWSTFTNSIKPEDS 256
Query: 250 ARTNNANPRYGGDYEWNR 267
P+ G +YEW R
Sbjct: 257 --RAYTRPQSGPEYEWRR 272
>gi|218197563|gb|EEC79990.1| hypothetical protein OsI_21637 [Oryza sativa Indica Group]
Length = 274
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 156/198 (78%), Gaps = 2/198 (1%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAP 129
+Y+P G RV+ +SIYKGKAA++++PR P+FV LDSGA K+ +EGFV+LQFAP
Sbjct: 79 AYSPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAP 138
Query: 130 AAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLP 189
A RQYDW+RKQVFSLSV E+GSL+ LG +SCEFFHDPFKG+S+EGKVRKVLKVEP P
Sbjct: 139 AVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVLKVEPTP 198
Query: 190 DGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDT 249
DG+ FFNLSVQN+L+N+DE+IYIP+T+ E+ V+VS FN+I+P+L+GW + ++I+ +D+
Sbjct: 199 DGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHLMGWSTFTNSIKPEDS 258
Query: 250 ARTNNANPRYGGDYEWNR 267
P+ G +YEW R
Sbjct: 259 --RAYTRPQSGPEYEWRR 274
>gi|357110788|ref|XP_003557198.1| PREDICTED: uncharacterized protein LOC100824321 [Brachypodium
distachyon]
Length = 274
Score = 259 bits (662), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 151/184 (82%), Gaps = 2/184 (1%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RVY +SIYKGKAAL+ +PR P+FV LDSGA K+++EGFV+LQFAPA RQYDW+RKQV
Sbjct: 93 RVYASYSIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGFVLLQFAPAVAARQYDWTRKQV 152
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
FSLSV E+G+L+ LG +SCEFFHDPFKG+S+EGKVRKVLKVEP PDG+G FFNLSVQN+
Sbjct: 153 FSLSVWEMGTLLTLGPTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNR 212
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
L+N+DES+YIP+T+ EY V+VS FN+I+P+++GW + ++I+ +D+ + P+ +
Sbjct: 213 LLNIDESVYIPITKGEYAVIVSTFNYIIPHIMGWSTFTNSIKLEDS--QPYSRPQSSPEL 270
Query: 264 EWNR 267
EW R
Sbjct: 271 EWRR 274
>gi|119638471|gb|ABL85062.1| expressed protein [Brachypodium sylvaticum]
Length = 266
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/223 (53%), Positives = 166/223 (74%), Gaps = 6/223 (2%)
Query: 49 VKCRQSEYYEQKSFSASPSNS----SYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRG 104
V R S+Y++ ++ + P + P A G RV+ +SIYKGKAAL+ +PR
Sbjct: 46 VPARHSDYFDPRARTPPPRDEYGEPPPPPLAPAQGGQSGRVFASYSIYKGKAALSFDPRP 105
Query: 105 PEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCE 164
P+FV LDSGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV E+G+L+ LG +SCE
Sbjct: 106 PQFVPLDSGAYKVAKEGFVLLQFAPAVAARQYDWTRKQVFSLSVWEMGTLLTLGPTDSCE 165
Query: 165 FFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLV 224
FFHDPFKG+S+EGKVRKVLKVEP PDG+G FFNLSVQN+L+N+DES+YIP+T+ EY V+V
Sbjct: 166 FFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNRLLNIDESVYIPITKGEYAVIV 225
Query: 225 SAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWNR 267
S FN+I+P+++GW + ++I+ +++ + P+ + EW R
Sbjct: 226 STFNYIIPHIMGWSTFTNSIKLEES--QPYSRPQSSPELEWRR 266
>gi|326493106|dbj|BAJ85014.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519312|dbj|BAJ96655.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 267
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 151/184 (82%), Gaps = 2/184 (1%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +SIYKGKAAL +PR P+FV L+SGA K+++EGFV+LQFAPA G RQYDW+RKQV
Sbjct: 86 RVFASYSIYKGKAALAFDPRPPQFVPLESGAYKVAKEGFVLLQFAPAVGPRQYDWARKQV 145
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
FSLSV E+G+L+ LG +SCEFFHDPFKG+S+EGKVRKVLKVEP PDG+G FFNLSVQN+
Sbjct: 146 FSLSVWEMGTLLTLGLTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNR 205
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
L+N+DE+IYIP+T+ EY V+VS FN+I+P+++GW + ++I+ +++ N P+ +
Sbjct: 206 LLNVDENIYIPITKGEYAVIVSTFNYIIPHIMGWSTFTNSIKPEESQPYN--RPQSSPEL 263
Query: 264 EWNR 267
EW R
Sbjct: 264 EWRR 267
>gi|217071924|gb|ACJ84322.1| unknown [Medicago truncatula]
Length = 239
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/197 (60%), Positives = 153/197 (77%), Gaps = 1/197 (0%)
Query: 39 STSIKKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAAL 98
S K K ++CR S+ + + P ++ + VG LP RVYVGHSIYKGKAAL
Sbjct: 36 SLPFKFKPFTIRCRHSDVFNPSPSNPPPPATTPPNNPL-VGALPPRVYVGHSIYKGKAAL 94
Query: 99 TVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALG 158
T+ P P+FV+LDSGA K+SR+G ++LQFAP+ G RQYDW+RKQ+F LSV E+GS+++LG
Sbjct: 95 TITPTPPKFVTLDSGAYKISRDGCLLLQFAPSVGPRQYDWNRKQLFMLSVDEMGSVISLG 154
Query: 159 ARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRA 218
ARESCEFFHDPFKG S+EGKVRKVLK+EP PDGSG FFNLSVQ+K++N+D S+ IPV++A
Sbjct: 155 ARESCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNLSVQDKIVNVDVSMNIPVSKA 214
Query: 219 EYTVLVSAFNFILPYLL 235
E +VL S F +I+PYLL
Sbjct: 215 ELSVLRSIFKYIMPYLL 231
>gi|356497854|ref|XP_003517771.1| PREDICTED: uncharacterized protein LOC100797370 [Glycine max]
Length = 263
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 146/196 (74%), Gaps = 6/196 (3%)
Query: 78 VGTLPT-RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQ- 135
V LP RVYVG+S+Y K LTV PR PEF S SGA K+S+EG+V+LQFAP+ G +
Sbjct: 68 VAELPQQRVYVGYSVYTRKGVLTVTPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEP 127
Query: 136 -YDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGH 194
YDW++KQ+FSLSV+E+G+L+ LGAR+S EF H+ K KS E +VRKVLKVEPL D +GH
Sbjct: 128 IYDWNQKQIFSLSVSEMGTLITLGARDSWEFSHETVKLKSNETEVRKVLKVEPLLDATGH 187
Query: 195 FFNLSVQNKLINLD---ESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTAR 251
F+LSVQ K +N++ ++I +PVTRAE VL FN+I+PYLLGW+A+ ++I+ + ++
Sbjct: 188 LFSLSVQKKPVNMEGIQKNISLPVTRAELAVLRVLFNYIMPYLLGWNAFGNSIKPEVYSQ 247
Query: 252 TNNANPRYGGDYEWNR 267
NN N RYG D EWNR
Sbjct: 248 VNNTNSRYGADNEWNR 263
>gi|116779826|gb|ABK21442.1| unknown [Picea sitchensis]
Length = 257
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 93/186 (50%), Positives = 138/186 (74%), Gaps = 2/186 (1%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
++YV H++YKG+ ALT++P+ P++++L+ G V +++EG + L+FAPA G RQYDWS+K++
Sbjct: 72 KIYVKHTVYKGEGALTMKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKI 131
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
+LSV E+G+L++LG ESCEF HDPF GKSE GK+ KVLKV L D G+FFNLSV ++
Sbjct: 132 IALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQDTGGYFFNLSVTDR 191
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGG-- 261
+ ++DES IP+T+ E++V+ S FNFILPYL+GWHAY + + +++ + P
Sbjct: 192 IADVDESFSIPITKGEFSVMQSIFNFILPYLMGWHAYMDSTKLNESGHFKSGGPSIAKRP 251
Query: 262 DYEWNR 267
D EW R
Sbjct: 252 DLEWGR 257
>gi|356500463|ref|XP_003519051.1| PREDICTED: uncharacterized protein LOC100775220 [Glycine max]
Length = 263
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/189 (55%), Positives = 140/189 (74%), Gaps = 5/189 (2%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQ--YDWSRK 141
RVYVG+S+Y K LTV PR PEF S SGA K+S+EG+V+LQFAP+ G + YDW+ K
Sbjct: 75 RVYVGYSVYTKKGMLTVIPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNHK 134
Query: 142 QVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQ 201
Q FSLSV+E+G+L+ LGAR+S EF H+ K KS + VRKVLKVEPL D +GH F+L V
Sbjct: 135 QTFSLSVSEMGTLIILGARDSWEFSHETVKLKSSKIDVRKVLKVEPLLDATGHLFSLRVL 194
Query: 202 NKLINLD---ESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPR 258
K N++ +SI++PVTRA+ VL S FN+I+PYLLGW+A+ ++I+ + ++ N+ NPR
Sbjct: 195 KKPANMEGIQKSIFLPVTRADLEVLRSLFNYIMPYLLGWNAFGNSIKPEVYSQVNSTNPR 254
Query: 259 YGGDYEWNR 267
YG D EWNR
Sbjct: 255 YGADNEWNR 263
>gi|116783258|gb|ABK22859.1| unknown [Picea sitchensis]
Length = 259
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
++YV H++YKG+ ALT++P+ P++++L+ G V +++EG + L+FAPA G RQYDWS+K++
Sbjct: 72 KIYVKHTVYKGEGALTMKPKLPDYITLNMGGVTVAKEGCMFLEFAPAVGPRQYDWSKKKI 131
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
+LSV E+G+L++LG ESCEF HDPF GKSE GK+ KVLKV L D G+FFNLSV ++
Sbjct: 132 IALSVVEVGTLLSLGPDESCEFTHDPFMGKSEAGKIMKVLKVGNLQDTGGYFFNLSVTDR 191
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGG-- 261
+ ++DES IP+T+ E++V+ S FNFILPYL+GWHAY + + +++ + P
Sbjct: 192 IADVDESFSIPITKGEFSVMQSIFNFILPYLMGWHAYMDSTKLNESGHFKSGGPSIAKRP 251
Query: 262 DYEWN 266
D EW+
Sbjct: 252 DLEWD 256
>gi|413942842|gb|AFW75491.1| whirly1 [Zea mays]
Length = 205
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 52 RQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
R S+Y++ ++ + Y G RV+ +SIYKGKAAL+ +PR P FV LD
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYG--RPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLD 112
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFK 171
SGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV EIG+L+ LG +SCEFFHDPFK
Sbjct: 113 SGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFK 172
Query: 172 GKSEEGKVRKVLKVEPLPDGSGHFFNL 198
G+SEEGKVRKVLK+EP PDG+G FFNL
Sbjct: 173 GRSEEGKVRKVLKIEPTPDGNGRFFNL 199
>gi|224286043|gb|ACN40733.1| unknown [Picea sitchensis]
Length = 184
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 113/157 (71%), Gaps = 2/157 (1%)
Query: 113 GAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKG 172
G V +++EG + L+FAPA G RQYDWS+K++ +LSV E+G+L++LG ESCEF HDPF G
Sbjct: 28 GGVTVAKEGCMFLEFAPAVGPRQYDWSKKKIIALSVVEVGTLLSLGPDESCEFTHDPFMG 87
Query: 173 KSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILP 232
KSE GK+ KVLKV L D G+FFNLSV +++ ++DES IP+T+ E++V+ S FNFILP
Sbjct: 88 KSEAGKIMKVLKVGNLQDTGGYFFNLSVTDRIADVDESFSIPITKGEFSVMQSIFNFILP 147
Query: 233 YLLGWHAYASTIRADDTARTNNANPRYGG--DYEWNR 267
YL+GWHAY + + +++ + P D EW R
Sbjct: 148 YLMGWHAYMDSTKLNESGHFKSGGPSIAKRPDLEWGR 184
>gi|302566179|pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2
gi|302566180|pdb|3N1I|A Chain A, Crystal Structure Of A Stwhy2-Ere32 Complex
gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A Stwhy2-Dt32 Complex
gi|302566184|pdb|3N1K|A Chain A, Crystal Structure Of A Stwhy2-Cere32 Complex
gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A Stwhy2-Rcere32 Complex
Length = 178
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 115/159 (72%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10 RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 70 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYAS 242
+ ++ +PVT AE+ V+ +AF+F LP+++GW + +
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN 168
>gi|426021772|sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
mitochondrial; AltName: Full=Protein WHIRLY 2;
Short=StWHY2; Flags: Precursor
gi|298359665|gb|ADI77438.1| Why2 protein [Solanum tuberosum]
Length = 238
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 124/184 (67%), Gaps = 1/184 (0%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 56 RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 115
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 116 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 175
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
+ ++ +PVT AE+ V+ +AF+F LP+++GW + + + + P+ +
Sbjct: 176 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQL-MEA 234
Query: 264 EWNR 267
EW+R
Sbjct: 235 EWDR 238
>gi|347948612|pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
gi|347948613|pdb|3R9Z|A Chain A, Crystal Structure Of Stwhy2 K67a (Form Ii)
gi|347948614|pdb|3RA0|A Chain A, Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
Length = 178
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 114/159 (71%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KG AAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10 RVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 70 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYAS 242
+ ++ +PVT AE+ V+ +AF+F LP+++GW + +
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN 168
>gi|12323827|gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidopsis thaliana]
Length = 237
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 115/155 (74%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R++ +SI+KGKAAL+VEP P F +DSG +++ R G +M+ F PA G R+YDW +KQ
Sbjct: 52 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 111
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G+++S EFFHDP S G+VRK L V+P DGSG+F +LSV N
Sbjct: 112 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNS 171
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWH 238
++ ++ +PVT+AE+ V+ +AF+F LP+++GW+
Sbjct: 172 ILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWN 206
>gi|22330568|ref|NP_177282.2| protein WHIRLY 2 [Arabidopsis thaliana]
gi|75161474|sp|Q8VYF7.1|WHY2_ARATH RecName: Full=Single-stranded DNA-binding protein WHY2,
mitochondrial; AltName: Full=Protein WHIRLY 2;
Short=AtWHY2; Flags: Precursor
gi|18175814|gb|AAL59932.1| unknown protein [Arabidopsis thaliana]
gi|21689867|gb|AAM67494.1| unknown protein [Arabidopsis thaliana]
gi|225898076|dbj|BAH30370.1| hypothetical protein [Arabidopsis thaliana]
gi|332197060|gb|AEE35181.1| protein WHIRLY 2 [Arabidopsis thaliana]
Length = 238
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 115/155 (74%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R++ +SI+KGKAAL+VEP P F +DSG +++ R G +M+ F PA G R+YDW +KQ
Sbjct: 53 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 112
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G+++S EFFHDP S G+VRK L V+P DGSG+F +LSV N
Sbjct: 113 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGYFISLSVNNS 172
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWH 238
++ ++ +PVT+AE+ V+ +AF+F LP+++GW+
Sbjct: 173 ILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWN 207
>gi|297841891|ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
gi|297334668|gb|EFH65086.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 115/155 (74%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R++ +SI+KGKAAL+VEP P F +DSG +++ R G +M+ F PA G R+YDW +KQ
Sbjct: 57 RLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQK 116
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G+++S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 117 FALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSIKPHADGSGYFISLSVNNG 176
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWH 238
++ ++ +PVT+AE+ V+ +AF+F LP+++GW+
Sbjct: 177 ILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWN 211
>gi|302764906|ref|XP_002965874.1| hypothetical protein SELMODRAFT_84708 [Selaginella moellendorffii]
gi|302802736|ref|XP_002983122.1| hypothetical protein SELMODRAFT_117665 [Selaginella moellendorffii]
gi|300149275|gb|EFJ15931.1| hypothetical protein SELMODRAFT_117665 [Selaginella moellendorffii]
gi|300166688|gb|EFJ33294.1| hypothetical protein SELMODRAFT_84708 [Selaginella moellendorffii]
Length = 226
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 117/178 (65%), Gaps = 2/178 (1%)
Query: 80 TLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWS 139
T P RV+ H YKGK AL + P F DSG LSREG VML+FAP+ RQYDW
Sbjct: 27 TRPRRVFADHVFYKGKCALNMRLIKPTFKISDSGDAILSREGTVMLEFAPSISQRQYDWG 86
Query: 140 RKQV-FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
+KQV F+LSV+E+G ++AL ES EFFHDP GKS+ G VRK LK+EP D +G FF L
Sbjct: 87 KKQVLFALSVSELGQILALTPSESLEFFHDPNMGKSDAGMVRKSLKIEPTTDRNGFFFGL 146
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNAN 256
+V NK+ + + IP+++ E+ ++ SA N+ LPYL+GWH YA+ + D A + A+
Sbjct: 147 TVANKVEKAEARLNIPISKGEFAIIRSAANYALPYLMGWH-YATEVNGIDEAGASGAS 203
>gi|115444353|ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group]
gi|50251252|dbj|BAD28032.1| putative Chain C, Structure Of The Plant Transcriptional Regulator
Pbf-2 [Oryza sativa Japonica Group]
gi|50252182|dbj|BAD28177.1| putative Chain C, Structure Of The Plant Transcriptional Regulator
Pbf-2 [Oryza sativa Japonica Group]
gi|113535487|dbj|BAF07870.1| Os02g0158400 [Oryza sativa Japonica Group]
gi|215692593|dbj|BAG88013.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704516|dbj|BAG94149.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740785|dbj|BAG96941.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218190103|gb|EEC72530.1| hypothetical protein OsI_05924 [Oryza sativa Indica Group]
gi|222622212|gb|EEE56344.1| hypothetical protein OsJ_05450 [Oryza sativa Japonica Group]
Length = 228
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 122/184 (66%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R + ++++KGKAAL+++P P F L+SG ++++ G VML F PA G R+YD+S+KQ+
Sbjct: 45 RKFASYTVFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQL 104
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL++LG ESCEFFHDP S EG+V+K L V PL + SG+F N++V N
Sbjct: 105 FALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVLNN 164
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
L E + +P+++AE+TV+ +A +F LP++LGW + + + + R D
Sbjct: 165 LQKTTERLSLPISKAEFTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVERPHPDS 224
Query: 264 EWNR 267
EW R
Sbjct: 225 EWER 228
>gi|388498336|gb|AFK37234.1| unknown [Lotus japonicus]
Length = 235
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 114/164 (69%)
Query: 74 TDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGV 133
T VA G RV+ + +YKGKAA+++ P P F LDSGA+ + R G +M+ F PA G
Sbjct: 40 TYVAKGYTTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGE 99
Query: 134 RQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSG 193
R+YDW ++Q F+LS TE+GSL+A+G ++SCEFFHDP S G+VRK L ++P + SG
Sbjct: 100 RKYDWEKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSG 159
Query: 194 HFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
+F +L+V N L+N E+ +PVT AE+ V+ +A +F LP+++GW
Sbjct: 160 YFVSLTVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGW 203
>gi|118484514|gb|ABK94132.1| unknown [Populus trichocarpa]
Length = 229
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+VEP P F SG +++ R G +ML F PA G R+YD+ ++Q
Sbjct: 47 RVFAPYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQK 106
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL++ G ++SCEFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 107 FALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKPHADGSGYFVSLSVVNN 166
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
++ E +PVT AE+TVL +A +F LP+++GW + + ++ + +P+ D
Sbjct: 167 ILKTTERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGTLASKLSKVDPQM-PDL 225
Query: 264 EWNR 267
EW++
Sbjct: 226 EWDK 229
>gi|448278892|gb|AGE44298.1| whirly transcription factor domain containing protein [Musa AB
Group]
Length = 245
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 122/202 (60%), Gaps = 2/202 (0%)
Query: 68 NSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQF 127
+SS P G+ R YV ++++KGKAAL+V P P F +DSG ++ ++G V+L F
Sbjct: 44 SSSVRPPFSPTGSSSVRRYVEYTVFKGKAALSVSPILPTFREVDSGVSRVHKKGCVILTF 103
Query: 128 APAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEP 187
PA G R+YDW +KQ F+LS TE+GSL+ LG ESCEFFHDP S EG+V+K L + P
Sbjct: 104 WPAIGQRKYDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSLEGQVKKSLSISP 163
Query: 188 LPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRAD 247
L D +G+ NLSV N + +E +PV++AE+T + + F+++LP+++GW AS
Sbjct: 164 LNDKAGYLLNLSVVNNIQKTNERFSLPVSKAEFTAIRTVFSYVLPHIMGWSQAASPQPPS 223
Query: 248 DTART--NNANPRYGGDYEWNR 267
T R EW R
Sbjct: 224 TATHTPKEQIEERPDPSLEWGR 245
>gi|224070977|ref|XP_002303313.1| predicted protein [Populus trichocarpa]
gi|222840745|gb|EEE78292.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+VEP P F SG +++ R G +ML F PA G R+YD+ ++Q
Sbjct: 1 RVFAPYSVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQK 60
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL++ G ++SCEFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 61 FALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKPHADGSGYFVSLSVVNN 120
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDY 263
++ E +PVT AE+TVL +A +F LP+++GW + + ++ + +P+ D
Sbjct: 121 ILKTTERFTVPVTTAEFTVLKTACSFALPHIMGWDRLTTPLPGTLASKLSKVDPQM-PDL 179
Query: 264 EWNR 267
EW++
Sbjct: 180 EWDK 183
>gi|449447529|ref|XP_004141520.1| PREDICTED: single-stranded DNA-bindig protein WHY2,
mitochondrial-like [Cucumis sativus]
Length = 241
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 111/154 (72%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ + +YKGKAAL++EP P F ++SG + R G +ML FAPA G R+YDW+RKQ+
Sbjct: 58 RVFASYHVYKGKAALSMEPCMPTFTKVESGNFIMDRRGSIMLTFAPAVGERKYDWTRKQL 117
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TEIGSL++LG R+SCEFFHDP S G+VRK L ++ DG+G+FF+L+V NK
Sbjct: 118 FALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNK 177
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
N ++ + +P T E++V+ +A +F LP LLGW
Sbjct: 178 PQNTNDYLSVPFTTGEFSVMKTACSFALPSLLGW 211
>gi|357148896|ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825843 [Brachypodium
distachyon]
Length = 231
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 122/185 (65%), Gaps = 1/185 (0%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R + ++++KGKAAL++ P P F ++SG ++ + G VML F PA G RQYD+S+KQ+
Sbjct: 47 RKFASYTVFKGKAALSISPILPNFTKIESGGSRVKKNGSVMLTFFPAVGQRQYDYSKKQL 106
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL++LG+ ESCEFFHDP S EG+V+K L + PL + +G+F N++V N
Sbjct: 107 FALSPTEVGSLISLGSAESCEFFHDPSMKSSHEGQVKKSLSITPLGNDNGYFVNITVLNN 166
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNAN-PRYGGD 262
+ +E + +PVT+AE+ V+ +A ++ LP+++GW ++ TA + R D
Sbjct: 167 VQKTNERLSVPVTKAEFAVMRTALSYALPHIMGWDQALTSHPQSPTAPASKPRVERPHPD 226
Query: 263 YEWNR 267
EW R
Sbjct: 227 SEWER 231
>gi|302399107|gb|ADL36848.1| WHY domain class transcription factor [Malus x domestica]
Length = 237
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 109/154 (70%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
+VY I+KGKAAL++ P P F L+SG++ + R G VML+F PA G R+YDW ++Q+
Sbjct: 52 QVYASFDIFKGKAALSLTPVLPTFTKLESGSLVVDRRGSVMLKFTPAIGERKYDWEKRQM 111
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+G+L++LG+ +SCE FHDP S G+VRK L ++P DGSG+F +L+V N
Sbjct: 112 FALSATEVGALISLGSNDSCELFHDPSMKSSNAGQVRKSLSIKPHADGSGYFVSLTVVNN 171
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
L+ ES +PV AE+ V+ +A +F LP+++GW
Sbjct: 172 LLKTRESFSVPVMTAEFAVMKTACSFALPHIMGW 205
>gi|242064094|ref|XP_002453336.1| hypothetical protein SORBIDRAFT_04g004060 [Sorghum bicolor]
gi|241933167|gb|EES06312.1| hypothetical protein SORBIDRAFT_04g004060 [Sorghum bicolor]
Length = 230
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 120/187 (64%)
Query: 81 LPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSR 140
L ++ Y ++++KGKAAL+++P P F L+SG ++SR G +ML F PA G R+YD+++
Sbjct: 44 LSSKKYASYTVFKGKAALSIQPILPSFSKLESGGSRVSRNGSIMLTFFPAVGPRKYDFTK 103
Query: 141 KQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSV 200
KQ+F+LS TE+GSL++LG ESCEFFHDP S EG V+K L + PL SG+F N++V
Sbjct: 104 KQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGMVKKSLSITPLGSDSGYFVNITV 163
Query: 201 QNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYG 260
N + ++ + +P+T+AE+ V+ + +F LP+++GW + A + R
Sbjct: 164 VNSVEKTNDRLSVPITKAEFAVMRTTLSFALPHIMGWDQALTNHHPSPPAISKPRVERPH 223
Query: 261 GDYEWNR 267
D EW R
Sbjct: 224 PDSEWER 230
>gi|357512363|ref|XP_003626470.1| hypothetical protein MTR_7g116270 [Medicago truncatula]
gi|355501485|gb|AES82688.1| hypothetical protein MTR_7g116270 [Medicago truncatula]
gi|388497124|gb|AFK36628.1| unknown [Medicago truncatula]
Length = 226
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 120/174 (68%), Gaps = 6/174 (3%)
Query: 64 ASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFV 123
++ +N++Y+ A G R++ +S+YKGKAA ++ P P F LDSGA+ + R G +
Sbjct: 30 STATNNNYS----AKGYTSDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRHGSI 85
Query: 124 MLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVL 183
M+ F PA G R+YDW ++Q+F+LS TE+GSL+A+G ++SCEFFHDP S G+VRK L
Sbjct: 86 MMSFMPAIGERKYDWEKRQIFALSATEVGSLIAIGPQDSCEFFHDPSMKSSNAGQVRKSL 145
Query: 184 KVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
++ P +G+F +LSV N ++N ++ +PVT AE+ V+ +A +F LP+++GW
Sbjct: 146 SIK--PHSNGYFVSLSVVNSVLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGW 197
>gi|225459963|ref|XP_002267315.1| PREDICTED: uncharacterized protein LOC100258449 [Vitis vinifera]
gi|297734756|emb|CBI16990.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G P RVY + +YKGKA+LTV P P+F LDSG +K+ R G +MLQF+PA G R+YDW
Sbjct: 52 GNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDW 111
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
+KQ F+LS E+GSL++L CEFFHDP S G+VRK L V+ + DG +F +L
Sbjct: 112 EKKQFFALSAVEVGSLLSLSPGGGCEFFHDPSMKTSNAGQVRKSLSVKSM-DGGSYFLSL 170
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAY 240
SV N + +E + +P+T AE+ V+ +A +F LP++LGW Y
Sbjct: 171 SVVNNIQKTNERLAVPLTAAEFAVMQTACSFALPHILGWDRY 212
>gi|195627490|gb|ACG35575.1| DNA binding protein [Zea mays]
Length = 230
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 118/189 (62%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G L + + ++++KGKAAL++ P P F L+SG ++S+ G VML F PA G R+YD+
Sbjct: 42 GNLSGKKFASYTVFKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDY 101
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
++KQ+F+LS TE+GSL++LG ESCEFFHDP S EG V+K L + PL SG+F N+
Sbjct: 102 TKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNI 161
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPR 258
+V N ++ + +P+T+AE+ V+ + +F LP+++GW + A + R
Sbjct: 162 TVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPPASSRPTVER 221
Query: 259 YGGDYEWNR 267
D EW R
Sbjct: 222 PHPDSEWER 230
>gi|194703090|gb|ACF85629.1| unknown [Zea mays]
gi|323388661|gb|ADX60135.1| PBF-2 like transcription factor [Zea mays]
gi|323388771|gb|ADX60190.1| PBF-2 like transcription factor [Zea mays]
Length = 232
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 10/195 (5%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G L + + ++++KGKAAL++ P P F L+SG ++S+ G VML F PA G R+YD+
Sbjct: 42 GNLSGKKFASYTVFKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDY 101
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
++KQ+F+LS TE+GSL++LG ESCEFFHDP S EG V+K L + PL SG+F N+
Sbjct: 102 TKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNI 161
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW------HAYASTIRADDTART 252
+V N ++ + +P+T+AE+ V+ + +F LP+++GW H A A
Sbjct: 162 TVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPAPPASSRPTV 221
Query: 253 NNANPRYGGDYEWNR 267
+P D EW R
Sbjct: 222 ERPHP----DSEWER 232
>gi|413926543|gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays]
gi|413926544|gb|AFW66476.1| DNA binding protein isoform 2 [Zea mays]
Length = 274
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 10/195 (5%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G L + + ++++KGKAAL++ P P F L+SG ++S+ G VML F PA G R+YD+
Sbjct: 84 GNLSGKKFASYTVFKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDY 143
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
++KQ+F+LS TE+GSL++LG ESCEFFHDP S EG V+K L + PL SG+F N+
Sbjct: 144 TKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNI 203
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW------HAYASTIRADDTART 252
+V N ++ + +P+T+AE+ V+ + +F LP+++GW H A A
Sbjct: 204 TVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPAPPASSRPTV 263
Query: 253 NNANPRYGGDYEWNR 267
+P D EW R
Sbjct: 264 ERPHP----DSEWER 274
>gi|226506170|ref|NP_001152589.1| LOC100286229 [Zea mays]
gi|195657845|gb|ACG48390.1| DNA binding protein [Zea mays]
Length = 232
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 118/195 (60%), Gaps = 10/195 (5%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G L + + ++++KGKAAL++ P F L+SG ++S+ G VML F PA G R+YD+
Sbjct: 42 GNLSGKKFASYTVFKGKAALSIHPILXSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDY 101
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
++KQ+F+LS TE+GSL++LG ESCEFFHDP S EG V+K L + PL SG+F N+
Sbjct: 102 TKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNI 161
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW------HAYASTIRADDTART 252
+V N ++ + +P+T+AE+ V+ + +F LP+++GW H A A
Sbjct: 162 TVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPAPPASSRPTV 221
Query: 253 NNANPRYGGDYEWNR 267
+P D EW R
Sbjct: 222 ERPHP----DSEWER 232
>gi|449533266|ref|XP_004173597.1| PREDICTED: single-stranded DNA-bindig protein WHY2,
mitochondrial-like, partial [Cucumis sativus]
Length = 156
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 103/143 (72%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ + +YKGKAAL++EP P F ++SG + R G +ML FAPA G R+YDW+RKQ+
Sbjct: 12 RVFASYYVYKGKAALSMEPCMPTFTKVESGNFIMDRRGSIMLTFAPAVGERKYDWTRKQL 71
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TEIGSL++LG R+SCEFFHDP S G+VRK L ++ DG+G+FF+L+V NK
Sbjct: 72 FALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNK 131
Query: 204 LINLDESIYIPVTRAEYTVLVSA 226
N ++ + +P T E++V+ +A
Sbjct: 132 PQNTNDYLSVPFTTGEFSVMKTA 154
>gi|356573153|ref|XP_003554728.1| PREDICTED: uncharacterized protein LOC100817863 [Glycine max]
Length = 235
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 129/202 (63%), Gaps = 10/202 (4%)
Query: 40 TSIKKKKLY--VKCRQSEYYEQKSFSA--SPSNSSYAPTDVAVGTLPTRVYVGHSIYKGK 95
TS + +L + R+ E ++ S SA S + ++YA A G R++ +++YKGK
Sbjct: 11 TSTSRHRLLEVLSSRKVEVGDRLSHSAGISTATNNYA----AKGYASDRIFAPYTVYKGK 66
Query: 96 AALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLV 155
AA ++ P P F L+SG V + R G +M+ F + G R+YDW ++Q F+LS TE+GSL+
Sbjct: 67 AAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLI 126
Query: 156 ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPV 215
+GA++SC+FFHDP S G+VRK L ++ P +G+F +L+V N L+N ++ +PV
Sbjct: 127 TMGAQDSCDFFHDPSMLSSNAGQVRKSLSIK--PHANGYFVSLTVVNNLLNTNDYFSVPV 184
Query: 216 TRAEYTVLVSAFNFILPYLLGW 237
T AE+ V+ +A +F LP+++GW
Sbjct: 185 TTAEFAVMKTACSFALPHIMGW 206
>gi|255632067|gb|ACU16386.1| unknown [Glycine max]
Length = 264
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 123/200 (61%), Gaps = 6/200 (3%)
Query: 38 ESTSIKKKKLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAA 97
E S +K ++ + RQ E + F+ S + S+ A G R++ +++YKGKAA
Sbjct: 20 EVLSSRKVEVGDRLRQ----EGRDFTYSAAISTATNNYAAKGHASDRIFAPYTVYKGKAA 75
Query: 98 LTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVAL 157
++ P P F LDSG V + R G +M+ F + G R+YDW ++Q F+LS TE+GSL+ +
Sbjct: 76 FSLIPCLPTFTKLDSGTVVVDRRGSIMMSFMHSIGERKYDWDKRQKFALSATEVGSLITM 135
Query: 158 GARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTR 217
A++SC+FFHDP S G+VRK L ++ P +G+F +L+V N L+N + +PVT
Sbjct: 136 DAQDSCDFFHDPSMLSSNAGQVRKSLSIK--PHANGYFVSLTVVNNLLNTKDYFSVPVTT 193
Query: 218 AEYTVLVSAFNFILPYLLGW 237
AE+ V+ +A F LP+++GW
Sbjct: 194 AEFAVMKTACTFALPHIMGW 213
>gi|255637711|gb|ACU19178.1| unknown [Glycine max]
Length = 235
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 128/202 (63%), Gaps = 10/202 (4%)
Query: 40 TSIKKKKLY--VKCRQSEYYEQKSFSA--SPSNSSYAPTDVAVGTLPTRVYVGHSIYKGK 95
TS + +L + R+ E ++ S SA S ++YA A G R++ +++YKGK
Sbjct: 11 TSTSRHRLLEVLSSRKVEVGDRLSHSAGISTVTNNYA----AKGYASDRIFAPYTVYKGK 66
Query: 96 AALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLV 155
AA ++ P P F L+SG V + R G +M+ F + G R+YDW ++Q F+LS TE+GSL+
Sbjct: 67 AAFSLIPCLPTFTKLNSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLI 126
Query: 156 ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPV 215
+GA++SC+FFHDP S G+VRK L ++ P +G+F +L+V + L+N ++ +PV
Sbjct: 127 TMGAQDSCDFFHDPSMLSSNAGQVRKSLSIK--PHANGYFVSLTVVDNLLNTNDYFSVPV 184
Query: 216 TRAEYTVLVSAFNFILPYLLGW 237
T AE+ V+ +A +F LP+++GW
Sbjct: 185 TTAEFAVMKTACSFALPHIMGW 206
>gi|449445768|ref|XP_004140644.1| PREDICTED: single-stranded DNA-bindig protein WHY1,
chloroplastic-like [Cucumis sativus]
Length = 108
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 80/89 (89%), Gaps = 1/89 (1%)
Query: 175 EEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYL 234
+EGKVRK+LKVEPLPDGSGHFFNL+VQNKLIN+DESIYIP+T+AEYTVLV AF FILP+L
Sbjct: 19 DEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHL 78
Query: 235 LGWHAYASTI-RADDTARTNNANPRYGGD 262
+GWH A+T+ + +D++R N ANPRYG D
Sbjct: 79 MGWHTIANTMTKPEDSSRGNTANPRYGVD 107
>gi|223945821|gb|ACN26994.1| unknown [Zea mays]
gi|413942841|gb|AFW75490.1| whirly1 [Zea mays]
Length = 177
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 52 RQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
R S+Y++ ++ + Y G RV+ +SIYKGKAAL+ +PR P FV LD
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYG--RPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLD 112
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFK 171
SGA K+++EGFV+LQFAPA RQYDW+RKQVFSLSV EIG+L+ LG +SCEFFHDPFK
Sbjct: 113 SGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGPTDSCEFFHDPFK 172
Query: 172 GK 173
G+
Sbjct: 173 GR 174
>gi|297605166|ref|NP_001056790.2| Os06g0145800 [Oryza sativa Japonica Group]
gi|255676711|dbj|BAF18704.2| Os06g0145800 [Oryza sativa Japonica Group]
Length = 190
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 82/104 (78%)
Query: 70 SYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAP 129
+Y+P G RV+ +SIYKGKAA++++PR P+FV LDSGA K+ +EGFV+LQFAP
Sbjct: 77 AYSPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAP 136
Query: 130 AAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGK 173
A RQYDW+RKQVFSLSV E+GSL+ LG +SCEFFHDPFKG+
Sbjct: 137 AVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGR 180
>gi|147819709|emb|CAN74120.1| hypothetical protein VITISV_034895 [Vitis vinifera]
Length = 185
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G P RVY + +YKGKA+LTV P P+F LDSG +K+ R G +MLQF+PA G R+YDW
Sbjct: 52 GNYPDRVYAPYCVYKGKASLTVYPVLPKFSRLDSGGLKVDRHGVMMLQFSPAVGERKYDW 111
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDP 169
+KQ F+LS E+GSL++L CEFFHDP
Sbjct: 112 EKKQFFALSAVEVGSLLSLSPGGGCEFFHDP 142
>gi|449458111|ref|XP_004146791.1| PREDICTED: single-stranded DNA-binding protein WHY2,
mitochondrial-like [Cucumis sativus]
Length = 198
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 194 HFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTI-RADDTART 252
+F +VQNKLIN+DESIYIP+T+AEYTVLV AF FILP+L+GWH A+T+ + +D++R
Sbjct: 124 YFAAQAVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTMTKPEDSSRG 183
Query: 253 NNANPRYGGDYEWNR 267
N ANPRYGGD+EWNR
Sbjct: 184 NTANPRYGGDFEWNR 198
>gi|307106759|gb|EFN55004.1| hypothetical protein CHLNCDRAFT_134820 [Chlorella variabilis]
Length = 1274
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 5/154 (3%)
Query: 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVF 144
VY ++IYKGKAA+ ++ P + S+ SG +K+SREG ++L+FA + G +QYDW++K+ F
Sbjct: 1097 VYSDYTIYKGKAAMAIKVIKPTWESIGSG-LKISREGTLLLEFAASVGPQQYDWTKKETF 1155
Query: 145 SLSVTEIGSLV-ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
LS E +++ A AR+S E HDP KG+ EG V K + P PD G FF S+ +
Sbjct: 1156 GLSALECAAVLEAADARQSFEALHDPNKGRGGEGTVYKKFNMRPAPD-KGWFF--SIAST 1212
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
+I V+ AE ++ F+F++P LLG+
Sbjct: 1213 ASGSQVNISCNVSDAELRLVTRVFDFVIPRLLGF 1246
>gi|384244785|gb|EIE18283.1| ssDNA-binding transcriptional regulator [Coccomyxa subellipsoidea
C-169]
Length = 250
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAA-------GVRQYD 137
+Y ++IYKGKAA + R P +V G++ L R G ++++FAP A G R Y
Sbjct: 69 LYANYAIYKGKAAASFRVRKPRWVEAQDGSISLDRAGSLIVEFAPVAPGSGTNVGNRSYQ 128
Query: 138 WSRKQVFSLSVTEIGSLVALGARESC-------EFFHDPFKGKSEEGKVRKVLKVEPLPD 190
W +KQ F+LS E+ LV ESC E FHDP KG ++ GK+ K L ++
Sbjct: 129 WDKKQTFALSPVELAGLV-----ESCTTGKSMKELFHDPNKGGTDSGKIAKTLSLQRFDQ 183
Query: 191 GSGHFFNLSVQNKL-INLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
G + L+V++ + ++ +P+T AE L S F++P LLGW
Sbjct: 184 GQDWYLQLAVKDSASKDGSATMGLPITGAELYTLKSLSEFLIPRLLGW 231
>gi|303289333|ref|XP_003063954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454270|gb|EEH51576.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAP---AAGVRQYDWSR 140
+VY +I+K K A+ + P F L +G+ + R+G + L+FAP AG +QYDWSR
Sbjct: 139 KVYCNFAIHKSKTAVQMSAIKPTFELLPNGSKQKKRDGAMFLEFAPVAAGAGQKQYDWSR 198
Query: 141 KQVFSLSVTEIGSLV-ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGH-FFNL 198
KQ SLS E L AL A FFHDP+ G S +G+ K LK EP+PDGSG F NL
Sbjct: 199 KQSISLSPLEFMELSEALAANRGVNFFHDPWMGTSRQGETTKSLKAEPMPDGSGGIFLNL 258
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
+V + + E + I V+ E+ V +++P L G+
Sbjct: 259 TVASGGGRV-EKLNIAVSFQEFAVFRELARYLVPRLTGF 296
>gi|412985999|emb|CCO17199.1| predicted protein [Bathycoccus prasinos]
Length = 419
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
R +V SIYK K+AL+V+ P F + G + R G ++L+FAP+ G R+YDW+RK
Sbjct: 238 RTFVDFSIYKSKSALSVKLVKPTFETDHQGRTIMKRSGGILLEFAPSIGTRKYDWTRKGS 297
Query: 144 FSLSVTEIGSLVAL--GARES----CEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFN 197
F LS E L +R+S EFFHDP G S +G V K LK+E +PDG+G F
Sbjct: 298 FMLSPIEAAELANRLNPSRQSIAQKVEFFHDPGMGGSSQGSVTKSLKMEAMPDGTGGVF- 356
Query: 198 LSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
L+ ++ IPV+ E + L ++P ++G+
Sbjct: 357 LNYNQTKFGEKLNVNIPVSFGEVSALELLIKHLVPRVMGF 396
>gi|255084617|ref|XP_002508883.1| predicted protein [Micromonas sp. RCC299]
gi|226524160|gb|ACO70141.1| predicted protein [Micromonas sp. RCC299]
Length = 347
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 19/188 (10%)
Query: 60 KSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSR 119
+ F+A + +S A D +RVY +++YK KAA + P F G+ R
Sbjct: 163 RQFTAGNNKASSANDDAG-----SRVYCDYAVYKSKAAAKFQVIKPTFEVKPDGSRAKKR 217
Query: 120 EGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLV-ALGARESCEFFHDPFKGKSEEGK 178
+G V+L+ APA G RQYDW++KQ LS E+ L +L FFHDP G + +G
Sbjct: 218 DGGVLLEMAPAVGPRQYDWAQKQTIMLSPLELVELTESLHFGRGVNFFHDPGMGTNRQGA 277
Query: 179 VRKVLKVEPLPDGSGH-FFNLSVQ--------NKLINLDESIYIPVTRAEYTVLVSAFNF 229
+ K LK EP+PDGSG F N+ V + +N++ I V+ AE+ L +
Sbjct: 278 MTKSLKAEPMPDGSGGIFLNMGVTTGGDGANGGQRVNMN----IAVSFAEFAALRHLSAY 333
Query: 230 ILPYLLGW 237
+ P L+G+
Sbjct: 334 LTPRLMGF 341
>gi|145355417|ref|XP_001421958.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582197|gb|ABP00252.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 152
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 86 YVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFS 145
+V + +YK K AL ++ F S SG + R G V+L+ A A RQYDW K F
Sbjct: 1 FVDYGVYKTKGALKLKAVRATFESDASGRRIMKRAGGVLLELANATAPRQYDWGNKGSFM 60
Query: 146 LSVTEIGSLV-ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKL 204
LS TE L + + C FFHDP G + G V K KVEP+PDGSG F +++Q
Sbjct: 61 LSATEAAELADRMASNAPCSFFHDPGAGGANRGNVNKAFKVEPMPDGSGGLF-VNLQTTS 119
Query: 205 INLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
+ +PV+ E L +++P + G+
Sbjct: 120 GGNKSFVSVPVSYGESAALRHILVYLVPKIAGF 152
>gi|223947295|gb|ACN27731.1| unknown [Zea mays]
gi|413942840|gb|AFW75489.1| whirly1 [Zea mays]
Length = 153
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 52 RQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLD 111
R S+Y++ ++ + Y G RV+ +SIYKGKAAL+ +PR P FV LD
Sbjct: 55 RHSDYFDPRAPPPPRGDGGYG--RPPNGAQDGRVFTSYSIYKGKAALSFDPRPPLFVPLD 112
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
SGA K+++EGFV+LQFAPA RQYDW+RKQV
Sbjct: 113 SGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144
>gi|255561490|ref|XP_002521755.1| conserved hypothetical protein [Ricinus communis]
gi|223538968|gb|EEF40565.1| conserved hypothetical protein [Ricinus communis]
Length = 173
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 109 SLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHD 168
++ SG +K+ R G ++L F PA G R+YD+ ++Q F+LS TE+GSL++LG ++S + FHD
Sbjct: 76 TVQSGHLKVERRGVILLTFLPAIGERKYDYEKRQSFALSTTEVGSLISLGPKDSFDCFHD 135
Query: 169 PFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKL 204
P S G+VRK L ++P +G G+F +LS N +
Sbjct: 136 PGMLSSNAGEVRKSLSLKPHAEGGGYFISLSSWNNV 171
>gi|308812987|ref|XP_003083800.1| DNA-binding protein p24 (ISS) [Ostreococcus tauri]
gi|116055682|emb|CAL57767.1| DNA-binding protein p24 (ISS) [Ostreococcus tauri]
Length = 240
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 82 PTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRK 141
P +V +YK + A+ ++ P +L AV + R G V+L+ A A R YDW K
Sbjct: 78 PPTTFVDFGVYKTRGAMKMKAVRPTLGALGENAV-VRRPGGVLLELANATAPRTYDWQNK 136
Query: 142 QVFSLSVTEIGSLV-ALGARESCEFFHDPFKGK-SEEGKVRKVLKVEPLPDGSGHFF-NL 198
F LS TE L + A SC FFHD K G + K KVEP+PDGSG F NL
Sbjct: 137 GSFMLSGTEAAELADRMAANGSCSFFHDSAKANGGGGGTLGKAFKVEPMPDGSGGMFVNL 196
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
+V + +PV+ E + +++P +LG+
Sbjct: 197 TVTLSENRGQQRFSVPVSYGESAAIRQLLVYLVPRVLGF 235
>gi|302829905|ref|XP_002946519.1| hypothetical protein VOLCADRAFT_86539 [Volvox carteri f. nagariensis]
gi|300268265|gb|EFJ52446.1| hypothetical protein VOLCADRAFT_86539 [Volvox carteri f. nagariensis]
Length = 3754
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 27/173 (15%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFA-----------PAAG 132
RVYV IYK +AA+ V P F + ++G L R+G ++L+FA PAAG
Sbjct: 3589 RVYVNFHIYKTRAAMAVRLLPPSFTT-ENGYKTLERDGVMLLEFANANPGQPSGTAPAAG 3647
Query: 133 V--RQYDWSRKQVFSLSVTEIGSLVA---LGARESCEFFHDPFK-GKSEEGKVRKVLKVE 186
R Y+WS K F+LS +E+G+++A + + + +HDP K GK G+ K L ++
Sbjct: 3648 GINRTYNWSNKISFALSPSELGTMLAGDAIASDKGLVMYHDPTKLGKV--GEPMKRLTMK 3705
Query: 187 PLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHA 239
+PDG+ F L ++I +PV+R E+ VL S ++ +P LLG+ A
Sbjct: 3706 QMPDGAISF-------SLSAAPDNISLPVSRGEFEVLKSLAHYAIPRLLGFDA 3751
>gi|124484361|dbj|BAF46291.1| transcription regulator Pbf-2 [Chlamydomonas reinhardtii]
Length = 238
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 28/200 (14%)
Query: 57 YEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVK 116
Y S + P N + AP D A + RVY + +YK +AA+ + P F +G V
Sbjct: 47 YSNGSAAPVPPNFA-APNDRAATSSSDRVYTNYYVYKTRAAMCLRLLPPTFAKAQAGKV- 104
Query: 117 LSREGFVMLQFAPAAGV-------------RQYDWSRKQVFSLSVTEIGSLV---ALGAR 160
L R+G ++L+FA A R Y+W K F+LS E+G+++ A+ +
Sbjct: 105 LERDGTMLLEFATANAAAPGAGNGPAGNVNRTYNWGNKVTFALSPVELGNILAGDAVASD 164
Query: 161 ESCEFFHDPFK-GKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAE 219
+ +HDP K GK+ G+ K L ++ LPDG+ FNL+ E+ +PVT+ E
Sbjct: 165 KGLVLWHDPAKLGKT--GEPIKKLSLKQLPDGNIS-FNLTAG------PENFSVPVTKGE 215
Query: 220 YTVLVSAFNFILPYLLGWHA 239
+ V+ S F +P LLG+ A
Sbjct: 216 FEVIKSVAQFAIPRLLGFDA 235
>gi|159487549|ref|XP_001701785.1| transcription factor [Chlamydomonas reinhardtii]
gi|158281004|gb|EDP06760.1| transcription factor [Chlamydomonas reinhardtii]
Length = 238
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 28/200 (14%)
Query: 57 YEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVK 116
Y S + P N + AP D A + RVY + +YK +AA+ + P F +G V
Sbjct: 47 YSNGSAAPVPPNFA-APNDRAATSSSDRVYTNYYVYKTRAAMCLRLLPPTFAKAQAGKV- 104
Query: 117 LSREGFVMLQFAPAAGV-------------RQYDWSRKQVFSLSVTEIGSLV---ALGAR 160
L R+G ++L+FA A R Y+W K F+LS E+G+++ A+ +
Sbjct: 105 LERDGTMLLEFATANAAAPGAGSGPAGNVNRTYNWGNKVTFALSPVELGNILAGDAVASD 164
Query: 161 ESCEFFHDPFK-GKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAE 219
+ +HDP K GK+ G+ K L ++ LPDG+ FNL+ E+ +PVT+ E
Sbjct: 165 KGLVLWHDPAKLGKT--GEPIKKLSLKQLPDGNIS-FNLTAG------PENFSVPVTKGE 215
Query: 220 YTVLVSAFNFILPYLLGWHA 239
+ V+ S F +P LLG+ A
Sbjct: 216 FEVIKSVAQFAIPRLLGFDA 235
>gi|356500487|ref|XP_003519063.1| PREDICTED: uncharacterized protein LOC100782013 [Glycine max]
Length = 64
Score = 80.1 bits (196), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 47/61 (77%)
Query: 207 LDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWN 266
+ ESI++PVTRA+ VL S FN I+PYLLGW+A+ ++I+ + ++ N+ NPRYG D EWN
Sbjct: 4 IQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWN 63
Query: 267 R 267
R
Sbjct: 64 R 64
>gi|2947067|gb|AAC05348.1| hypothetical protein [Arabidopsis thaliana]
Length = 192
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 7/73 (9%)
Query: 46 KLYVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGP 105
KL VK RQS+Y+E++ F S S+ + + R YVGHSIYKGKAALT+EPR P
Sbjct: 53 KLTVKSRQSDYFEKQRFGDSSSSQNAEVSS-------PRFYVGHSIYKGKAALTIEPRAP 105
Query: 106 EFVSLDSGAVKLS 118
EFV+L+ +K++
Sbjct: 106 EFVALEIVMMKIN 118
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 14/104 (13%)
Query: 134 RQYDWSRKQVFSLSVTEIGSLVALGARESCEFF--HDPFKGKSE---EGKVRKVLKVEPL 188
RQ D+ KQ F S + + V+ S F+ H +KGK+ E + + + +E +
Sbjct: 59 RQSDYFEKQRFGDSSSSQNAEVS-----SPRFYVGHSIYKGKAALTIEPRAPEFVALEIV 113
Query: 189 PDGSGHF----FNLSVQNKLINLDESIYIPVTRAEYTVLVSAFN 228
F ++ VQNKL+N+DES+YIP+T+AE+ VL+SAFN
Sbjct: 114 MMKINWFGERYYDCGVQNKLLNVDESVYIPITKAEFAVLISAFN 157
>gi|397620242|gb|EJK65621.1| hypothetical protein THAOC_13502 [Thalassiosira oceanica]
Length = 317
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 81 LPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPA-AGVRQYDWS 139
+P R Y ++++ +AL+++ P F V + R G +ML+F P A + W+
Sbjct: 4 MPRRGYPQYTMFSSDSALSMKAAMPVFKKAGMDGVAVERRGKMMLEFVPRNASGSGFAWN 63
Query: 140 RKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGK--------------VRKVLKV 185
K +FSL+V E+G L++ + E H F S++G V KVL V
Sbjct: 64 DKTIFSLTVEEVGLLLSQLPGNAVELSHPTF--SSDDGAFGQESQVTQVSGDIVEKVLTV 121
Query: 186 EPLPDGSGHFFNLS-VQNKLINL---------DESIYIPVTRAEYTVLVSAFNFILPYLL 235
+P DG+ F + V N + + I + E+ VL S F +PY+L
Sbjct: 122 DP-GDGATMTFKVDYVTNGVGGQTPPGFDGIPSTPLEITIQAGEFEVLRSIFQTSIPYIL 180
Query: 236 GWHAYASTIRADDTAR 251
GW+ A +R
Sbjct: 181 GWNTTMDIASAAAISR 196
>gi|297836056|ref|XP_002885910.1| hypothetical protein ARALYDRAFT_899639 [Arabidopsis lyrata subsp.
lyrata]
gi|297331750|gb|EFH62169.1| hypothetical protein ARALYDRAFT_899639 [Arabidopsis lyrata subsp.
lyrata]
Length = 74
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 111 DSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSL 154
DS A KLS++GF++LQFAP+AGVRQY+W +KQV+ +T G L
Sbjct: 3 DSEAFKLSKDGFLLLQFAPSAGVRQYNWGKKQVWFYLLTSYGPL 46
>gi|348676880|gb|EGZ16697.1| hypothetical protein PHYSODRAFT_500116 [Phytophthora sojae]
Length = 224
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ S+Y +A V P P++ S S +K+ R G +ML +A A Y++ K
Sbjct: 29 RVFPNFSVYGSDSAFQVAPSAPQYTSAGS-YMKMKRVGAIMLSWAKATN-SGYNYQNKTF 86
Query: 144 FSLSVTEIGSLVALGARESCE--FFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQ 201
FSLS TE+G ++ L E F H P SEE K K L + SG N V
Sbjct: 87 FSLSPTEVGLVLELLDSRIPELSFTHSPNMNASEEDKNSKTLHIT---RASGSDGNPLVL 143
Query: 202 NKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHA 239
K+ + ES+ + E V + LP L G+H+
Sbjct: 144 IKVNHEGESVAT-LNVGEARVFRELLTYSLPRLFGFHS 180
>gi|301101636|ref|XP_002899906.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262102481|gb|EEY60533.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 226
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ SIY +A V P P++ + +K R G +ML +A A Y++ K
Sbjct: 29 RVFPNFSIYGSDSAFQVSPSPPQYTN-GGNYLKTKRVGAIMLSWAKATN-SGYNYQNKTF 86
Query: 144 FSLSVTEIGSLVALGARESCE--FFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQ 201
FSLS +E+G ++ L E H P SEE K K L + SG N +
Sbjct: 87 FSLSPSEVGLVLELLDSRIPELSLTHSPNMNASEEDKNTKSLHIT---RASGSDGNPLIL 143
Query: 202 NKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHA 239
K+ + ES+ + E V + LP LLG+H+
Sbjct: 144 IKVNHESESVAT-LNIGEARVFKELLTYSLPRLLGYHS 180
>gi|223994305|ref|XP_002286836.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978151|gb|EED96477.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 288
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 36/195 (18%)
Query: 77 AVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAP----AAG 132
++G +P R + ++++ +AL+V P F + + + R G ++L+F P AG
Sbjct: 73 SMGMMPRRGFPQYTVFGPDSALSVRAVLPNFKRAGTDGISVDRRGKIVLEFVPRNPSGAG 132
Query: 133 VRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHD----------------PFKGKSEE 176
+ W+ K FS+SV E+G V+ + E H K
Sbjct: 133 ---FQWADKTTFSMSVEEVGLFVSQLPQSGIELSHSLHYGGYGSGGEEDGGGSGGAKIAS 189
Query: 177 GK-VRKVLKVEPLPDGSGHFFNLSVQNKL-----INLDESIYIPVT-------RAEYTVL 223
G + KVL VEP S F ++N + D +P T E+ V
Sbjct: 190 GDMIEKVLTVEPGEASSVKFKIDYMKNGVGGQTPPGPDSEDKLPSTPLEATLQAGEFEVF 249
Query: 224 VSAFNFILPYLLGWH 238
S F +PY+LGW+
Sbjct: 250 RSIFQTSIPYILGWN 264
>gi|253761700|ref|XP_002489225.1| hypothetical protein SORBIDRAFT_0012s017770 [Sorghum bicolor]
gi|241947085|gb|EES20230.1| hypothetical protein SORBIDRAFT_0012s017770 [Sorghum bicolor]
Length = 91
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 112 SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQ 142
SGA K+++EG+V+LQFAPA RQYDW+RKQ
Sbjct: 5 SGAYKVAKEGYVLLQFAPAVATRQYDWTRKQ 35
>gi|145496067|ref|XP_001434025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401147|emb|CAK66628.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 117 LSREGFVMLQFAPA----AGVRQYDWSRKQVFSLSVTEIGSLVALG--ARESCEFFHDPF 170
+ + G+++ + P G +W +K+ +SL V +IG L+ A + F +
Sbjct: 20 IQKPGWILFELVPVIRQKEGNHHLEWDKKKHYSLGVKQIGQLLVTKNKAYDEASNFLITY 79
Query: 171 KGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFI 230
+ ++ + K+ K+ K + ++S +++ I +T+AEY + NF
Sbjct: 80 QAQANDKKLLKINKT-----AQDIYLSISQEDEQEKQFNPFKINLTQAEYVTALELINFS 134
Query: 231 LPYLLGWHAYASTIRADDTAR 251
LP+LLGW A + +D+ A+
Sbjct: 135 LPFLLGWDALYTPQYSDNDAQ 155
>gi|325185050|emb|CCA19542.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 211
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 83 TRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQ 142
+++Y ++Y+ A V P PE+V S +K R G ++L +A YD+++K
Sbjct: 21 SKIYPSFTVYESDAVFQVSPIQPEYVQ-QSNYLKTKRVGSLLLSWAKQRD-GSYDYTKKL 78
Query: 143 VFSLSVTEIGSLVALGARESCEFF--HDPFKGKSEEGKVRKVLKV----EPLPDGSGHFF 196
F+L+ +EIG ++ + + E H P + + LKV SG F
Sbjct: 79 YFALTPSEIGLVLEVLDSKVGEINIKHTPNRNDPAVQTTERTLKVVSAFSSREQTSGTKF 138
Query: 197 NLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHA 239
++ D + ++ E VL + LP L G+H+
Sbjct: 139 EVAG-------DFDVNTTLSTGETRVLKELLTYSLPRLYGFHS 174
>gi|294892207|ref|XP_002773948.1| hypothetical protein Pmar_PMAR011811 [Perkinsus marinus ATCC 50983]
gi|239879152|gb|EER05764.1| hypothetical protein Pmar_PMAR011811 [Perkinsus marinus ATCC 50983]
Length = 214
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Query: 77 AVGTLPTRVYVGHSIYKG----------KAALTVEPRGPEFVSLDSGAVKLSREGFVMLQ 126
A +P+R + G S+Y G A L V P+ D GAV ++REG +
Sbjct: 10 AANRVPSRAFFGGSVYSGMFDGFTVRGKNAKLDVRAIMPKLERKDDGAVSVAREGRIKWT 69
Query: 127 FAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSE--EGKVRKVLK 184
F + ++ SL T IGSL L A + + F E + + ++
Sbjct: 70 FT------GNNSAKGITVSLPPTTIGSL--LQATTTTKLSLATFWKMPEYADPNIPCKIE 121
Query: 185 VEPLPDGSGHFFNLSVQNKLINLD-ESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYAST 243
+EPL G G +++ + + + + + + + T E + + +LP L GW
Sbjct: 122 LEPLAGGEGLLISVAQKPEEDSQEVQKVSVEATAGELKAMQTVMESMLPSLYGWKLIPVD 181
Query: 244 IRADD 248
++ ++
Sbjct: 182 VQGEN 186
>gi|124262628|ref|YP_001023098.1| hypothetical protein Mpe_B0084 [Methylibium petroleiphilum PM1]
gi|124261874|gb|ABM96863.1| hypothetical protein Mpe_B0084 [Methylibium petroleiphilum PM1]
Length = 421
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 52 RQSEYYEQK--SFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVS 109
RQ + +EQ+ + A P+ +S + Y+ IY GKAAL S
Sbjct: 239 RQDQRHEQRQQARQAEPAEASA-----------DQEYLSQHIYGGKAALCF--------S 279
Query: 110 LDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVAL 157
D K+ V L+ A A+ RQYDW RK LS E+ ++A+
Sbjct: 280 ADQTRAKVH---TVRLEAAEASATRQYDWQRKIAIQLSQRELPLVLAV 324
>gi|406976196|gb|EKD98717.1| hypothetical protein ACD_23C00300G0005 [uncultured bacterium]
Length = 290
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 89 HSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSV 148
H IY KAALTVE E ++ +G L V+L+ A A G R YDWSRK F
Sbjct: 130 HHIYGLKAALTVEM--DELRTMGNGGGLLQ---TVILEAATATGHRSYDWSRKIAFQFMR 184
Query: 149 TEI 151
E+
Sbjct: 185 REL 187
>gi|110740244|dbj|BAF02020.1| hypothetical protein [Arabidopsis thaliana]
Length = 69
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 23/26 (88%)
Query: 213 IPVTRAEYTVLVSAFNFILPYLLGWH 238
+PVT+AE+ V+ +AF+F LP+++GW+
Sbjct: 13 VPVTKAEFAVMKTAFSFALPHIMGWN 38
>gi|221056943|ref|XP_002259609.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193809681|emb|CAQ40382.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 318
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 90 SIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVT 149
SI+ A ++P P+++ + + GF + +YD + K L +
Sbjct: 143 SIFGNSAMCLIKPIYPDYIVNKNKVTIYGKGGFQFVFMKKHINSNKYDKNNKMSVILKIN 202
Query: 150 EIGSLVALGARE------------SCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFN 197
+ L++L E S D K K + +R K +P + G+ +
Sbjct: 203 SLAHLLSLKDAEQIKVPIIIKGSNSNSLIIDKHKEKKDHIVIR--YKYQPFANSDGNMAD 260
Query: 198 LSVQNKLINLD--------------ESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
++ + +N E +++ +E+ + A N +LP LLGW
Sbjct: 261 MNNLDMEVNQSPQINNLNDEKKNNFEELHVSCPFSEFQLFQKAANLLLPQLLGW 314
>gi|170077972|ref|YP_001734610.1| hypothetical protein SYNPCC7002_A1358 [Synechococcus sp. PCC 7002]
gi|169885641|gb|ACA99354.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
Length = 168
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 42 IKKKKLYVKCRQSEYYEQKSFSASPSNSSYA-PTDVAVGTLPTRVYV-GHSIYKGKAALT 99
++KK+L + RQ YY +SF ++ DV T+ + + G SI++G++ +
Sbjct: 4 LRKKQLQQRLRQDPYYRLRSFEEVALAAAIGIKIDVNQATVDDWLRLPGISIHQGRSLVQ 63
Query: 100 VEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV----FSLSVTEIGSLV 155
+ +G +F SLD A L G + P A + + + ++ +L+ ++G+LV
Sbjct: 64 LTSQGVQFYSLDDVAAAL---GVPRQRLQPLAAILSFAYYAPELAPVQINLNRADLGALV 120
Query: 156 ALG 158
G
Sbjct: 121 DFG 123
>gi|290243159|ref|YP_003494829.1| hypothetical protein TK90_2878 [Thioalkalivibrio sp. K90mix]
gi|288945664|gb|ADC73362.1| hypothetical protein TK90_2878 [Thioalkalivibrio sp. K90mix]
Length = 259
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 123 VMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVAL--GARESCEF 165
V + A A G R YDW K + L+ TE+ + A+ G R CEF
Sbjct: 138 VQIDAAKAKGERAYDWGAKTIIQLTPTELAVVTAVFTGVRAKCEF 182
>gi|156095436|ref|XP_001613753.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802627|gb|EDL44026.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 323
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 31/176 (17%)
Query: 90 SIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVT 149
SI+ A ++P P+++ + + GF + + +YD K L +
Sbjct: 147 SIFGSSAMCLIKPIYPDYIVNKNKVTIYGKGGFQFVFMKKHSNSNRYDKGNKMSIILKIN 206
Query: 150 EIGSLVAL-------------GARESCEFFHDPFKGKSEEGKVRKVLKVEPL---PDGS- 192
+ L++L G+ +C D K K + +R K +P PDG+
Sbjct: 207 SLAHLLSLKDAEKIKTPICVKGSNNNCLII-DRHKEKKDHIVIR--YKYQPSAANPDGNL 263
Query: 193 GHFFNLSVQ-NKLINLD----------ESIYIPVTRAEYTVLVSAFNFILPYLLGW 237
G +L V+ N+ + ++ E +++ +E+ + A N +LP LLGW
Sbjct: 264 GEVNSLDVEVNQSLQINNLSDEKKNNFEELHVSSPFSEFLLFQKAANLLLPQLLGW 319
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,215,093,506
Number of Sequences: 23463169
Number of extensions: 170151434
Number of successful extensions: 372074
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 371932
Number of HSP's gapped (non-prelim): 96
length of query: 267
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 127
effective length of database: 9,074,351,707
effective search space: 1152442666789
effective search space used: 1152442666789
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)