BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024467
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 227
Score = 316 bits (810), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 144/188 (76%), Positives = 167/188 (88%)
Query: 79 GTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDW 138
G +V+VG+SIYKGKAALTVEPR PEF LDSGA KLSREG VMLQFAPAAGVRQYDW
Sbjct: 32 GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDW 91
Query: 139 SRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
SRKQVFSLSVTEIGS+++LG ++SCEFFHDP KG+S+EG+VRKVLKVEPLPDGSGHFFNL
Sbjct: 92 SRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNL 151
Query: 199 SVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPR 258
SVQNKLINLDE+IYIPVT+AE+ VLVSAFNF++PYLLGWH ++ + +D +R+NNANPR
Sbjct: 152 SVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNANPR 211
Query: 259 YGGDYEWN 266
G + EWN
Sbjct: 212 SGAELEWN 219
>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2
pdb|3N1I|A Chain A, Crystal Structure Of A Stwhy2-Ere32 Complex
pdb|3N1J|A Chain A, Crystal Structure Of A Stwhy2-Dt32 Complex
pdb|3N1K|A Chain A, Crystal Structure Of A Stwhy2-Cere32 Complex
pdb|3N1L|A Chain A, Crystal Structure Of A Stwhy2-Rcere32 Complex
Length = 178
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 115/159 (72%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KGKAAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10 RVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 70 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYAS 242
+ ++ +PVT AE+ V+ +AF+F LP+++GW + +
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN 168
>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
pdb|3R9Z|A Chain A, Crystal Structure Of Stwhy2 K67a (Form Ii)
pdb|3RA0|A Chain A, Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
Length = 178
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 114/159 (71%)
Query: 84 RVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQV 143
RV+ +S++KG AAL+ EPR P F LDSG VKL+R G +ML F P+ G R+YDW ++Q+
Sbjct: 10 RVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQL 69
Query: 144 FSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNK 203
F+LS TE+GSL+++G R+S EFFHDP S G+VRK L ++P DGSG+F +LSV N
Sbjct: 70 FALSATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNN 129
Query: 204 LINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYAS 242
+ ++ +PVT AE+ V+ +AF+F LP+++GW + +
Sbjct: 130 NLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTN 168
>pdb|3PMQ|A Chain A, Crystal Structure Of The Outer Membrane Decaheme
Cytochrome Mtrf
Length = 669
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 156 ALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDES 210
A E+C F H +G V VLKV P+ G + N L+ LD +
Sbjct: 613 ATAGTETCAFCHG-------QGTVADVLKVHPINKGELKLEGKPIPNPLLGLDST 660
>pdb|3OUT|A Chain A, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate.
pdb|3OUT|B Chain B, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate.
pdb|3OUT|C Chain C, Crystal Structure Of Glutamate Racemase From Francisella
Tularensis Subsp. Tularensis Schu S4 In Complex With
D-Glutamate
Length = 268
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 152 GSLVALGARESCEFFHD-------------PFKGKSEEGKVRKVLKVEPLPDGSGHFFNL 198
G +V L A+E +FHD P K K+ V ++P S ++L
Sbjct: 160 GHIVELVAKEYLSYFHDKNIQALILGCTHYPII-KESIAKILDVKLIDPSLQASKXLYSL 218
Query: 199 SVQNKLINLDES 210
+NKL+N +S
Sbjct: 219 LFENKLLNTTKS 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,671,697
Number of Sequences: 62578
Number of extensions: 292824
Number of successful extensions: 509
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)