Query 024467
Match_columns 267
No_of_seqs 59 out of 61
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3a_A PBF-2, P24: plant trans 100.0 2.5E-86 8.4E-91 591.4 20.1 212 48-266 8-219 (227)
2 3r9z_A WHY2 protein; stwhy2, s 100.0 3.2E-73 1.1E-77 492.4 17.5 168 77-244 3-170 (178)
3 1aoc_A Coagulogen; coagulation 51.0 9.2 0.00031 32.5 2.8 53 85-144 77-129 (175)
4 3pm7_A Uncharacterized protein 25.3 42 0.0014 25.8 2.5 24 210-233 52-75 (80)
5 1vq8_1 50S ribosomal protein L 19.3 34 0.0012 24.8 0.9 13 129-141 42-54 (57)
6 3j21_e 50S ribosomal protein L 13.2 52 0.0018 24.2 0.6 13 129-141 42-54 (62)
7 4g06_A Uncharacterized protein 12.4 1.2E+02 0.0042 23.1 2.4 19 210-228 59-77 (79)
8 1ylx_A Hypothetical protein AP 11.7 4.6E+02 0.016 20.9 5.6 40 81-123 40-79 (103)
9 2lhb_A Hemoglobin V (cyano Met 10.6 1E+02 0.0034 24.0 1.5 32 213-244 109-141 (149)
10 3iz5_l 60S ribosomal protein L 10.0 80 0.0027 24.9 0.7 14 129-142 40-53 (94)
No 1
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=2.5e-86 Score=591.42 Aligned_cols=212 Identities=70% Similarity=1.166 Sum_probs=165.3
Q ss_pred EeeeccccccccCCCCCCCCCCCCCCCCcccCCCCceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEE
Q 024467 48 YVKCRQSEYYEQKSFSASPSNSSYAPTDVAVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQF 127 (267)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeF 127 (267)
.++|||+||||+|++++++.+ +| ++.+++|||++|+||||||||+|+|++|+|+.+++|+++++|+|+|||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~----~~---a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEF 80 (227)
T 1l3a_A 8 QQMGRGSDYFEPQQQQQQQQQ----QP---QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQF 80 (227)
T ss_dssp ----------------------------------CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEE
T ss_pred ccccchhhhccccCCCCCccC----CC---CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEE
Confidence 468999999999998654321 11 58889999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccccceEEEEehhhhhhhhhccccccceeeecCCCCCCCCCceeeEEEEeeCCCCCcceEEEeEeecccCC
Q 024467 128 APAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINL 207 (267)
Q Consensus 128 APa~g~rqYDW~kKq~FsLS~tEvG~LLsl~~~~s~EffHdP~~g~s~eG~v~K~LkIeP~pdgsG~F~nLsV~nk~~~~ 207 (267)
||++|+|||||+|||+|+||++|||+||+|+++++|||||||+||++++|+++|+|+|||+|||+|+||||+|+|+++++
T Consensus 81 APa~g~RqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~ 160 (227)
T 1l3a_A 81 APAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINL 160 (227)
T ss_dssp EEBCSTTCBCGGGCEEEEECHHHHHHHHTCCTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTE
T ss_pred eeccCccccccccceEEEeCHHHHhHHHhcccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeecHhHHHHHHHHHHhhhhhhhchhhhhccCCCCcccccCCCCCCCCCCCccC
Q 024467 208 DESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYASTIRADDTARTNNANPRYGGDYEWN 266 (267)
Q Consensus 208 de~i~IPVT~gEfaVlrsl~~ysLP~LLGWda~~n~~~~~~~~~~~~~~~~~~~d~ew~ 266 (267)
+++++||||+|||+|||+||+|+||||||||+++|++|||+++++||++|||++|||||
T Consensus 161 de~~~VpVs~gEfaV~rsl~~f~LP~LlGw~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
T 1l3a_A 161 DENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAVNSFKPEDASRSNNANPRSGAELEWN 219 (227)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHHTTHHHHHTTCSCC-------------------
T ss_pred cceEEEechHHHHHHHHHHHHhhchhhcchhhccccCChhhcccccCCCCCcCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=3.2e-73 Score=492.37 Aligned_cols=168 Identities=47% Similarity=0.859 Sum_probs=153.2
Q ss_pred ccCCCCceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEEeecCcccccccccceEEEEehhhhhhhhh
Q 024467 77 AVGTLPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVA 156 (267)
Q Consensus 77 ~~~~~~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeFAPa~g~rqYDW~kKq~FsLS~tEvG~LLs 156 (267)
+++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||+
T Consensus 3 ~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Lls 82 (178)
T 3r9z_A 3 DAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLIS 82 (178)
T ss_dssp ----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHHT
T ss_pred CCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeecCCCCCCCCCceeeEEEEeeCCCCCcceEEEeEeecccCCCcceeeeecHhHHHHHHHHHHhhhhhhhc
Q 024467 157 LGARESCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLG 236 (267)
Q Consensus 157 l~~~~s~EffHdP~~g~s~eG~v~K~LkIeP~pdgsG~F~nLsV~nk~~~~de~i~IPVT~gEfaVlrsl~~ysLP~LLG 236 (267)
++++++|||||||+||+|++|+++|+|||||+|||+|+||||+|+|+.++++++++||||+|||+|||++|+|+||||||
T Consensus 83 l~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~~~~lP~LlG 162 (178)
T 3r9z_A 83 MGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMG 162 (178)
T ss_dssp CCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHHHHHHHHHTT
T ss_pred hcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q 024467 237 WHAYASTI 244 (267)
Q Consensus 237 Wda~~n~~ 244 (267)
||+++|+.
T Consensus 163 w~~~~~~~ 170 (178)
T 3r9z_A 163 WDRFTNRP 170 (178)
T ss_dssp GGGCCC--
T ss_pred hHHHhCCc
Confidence 99999974
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=50.99 E-value=9.2 Score=32.49 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=43.7
Q ss_pred eeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEEeecCcccccccccceEE
Q 024467 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVF 144 (267)
Q Consensus 85 vy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeFAPa~g~rqYDW~kKq~F 144 (267)
-|++|.-|+..+-.+.+..-|.|.---+|-+.| + -=||.+|-||--|+.|-.|
T Consensus 77 nf~pf~hf~secpvstrdcepvfgyt~a~efrv------i-vqapragfrqcvwqhkcry 129 (175)
T 1aoc_A 77 NFPPFTHFKSECPVSTRDCEPVFGYTVAGEFRV------I-VQAPRAGFRQCVWQHKCRF 129 (175)
T ss_dssp GSTTCCCCSSBCCEEEECCCCSEEEBTTCCEEE------E-CCBTTTTBCBCCCEEEETT
T ss_pred cCCCcccccccCCcccccccccccceecceEEE------E-EeCchhhhHHHHHhhhccc
Confidence 467899999999999999999998877776643 3 3489999999999987543
No 4
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=25.29 E-value=42 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.2
Q ss_pred ceeeeecHhHHHHHHHHHHhhhhh
Q 024467 210 SIYIPVTRAEYTVLVSAFNFILPY 233 (267)
Q Consensus 210 ~i~IPVT~gEfaVlrsl~~ysLP~ 233 (267)
.=.|++|..|+++|+.+++.+|-+
T Consensus 52 gKGITLT~eE~~~Lk~~L~~~~~~ 75 (80)
T 3pm7_A 52 GKGITLTNEEFAELSKTIKSMLEH 75 (80)
T ss_dssp EEEEEECHHHHHHHHHHHHHTCC-
T ss_pred cCcceeCHHHHHHHHHHHHHHHHh
Confidence 457999999999999999987643
No 5
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=19.35 E-value=34 Score=24.80 Aligned_cols=13 Identities=38% Similarity=0.854 Sum_probs=10.3
Q ss_pred ecCcccccccccc
Q 024467 129 PAAGVRQYDWSRK 141 (267)
Q Consensus 129 Pa~g~rqYDW~kK 141 (267)
|+.--|+|+|+.|
T Consensus 42 pa~r~R~ynWs~K 54 (57)
T 1vq8_1 42 KSAKRRDYEWQSK 54 (57)
T ss_dssp TCSSCCCCGGGSC
T ss_pred chhhhcCcchhhh
Confidence 5656789999987
No 6
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.23 E-value=52 Score=24.18 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=9.7
Q ss_pred ecCcccccccccc
Q 024467 129 PAAGVRQYDWSRK 141 (267)
Q Consensus 129 Pa~g~rqYDW~kK 141 (267)
|+.--|+|+|+.|
T Consensus 42 ps~r~R~YnWs~K 54 (62)
T 3j21_e 42 RSRRLRKYRWSKK 54 (62)
T ss_dssp TCSSCCCCTTCSH
T ss_pred hhhhhccccHHHH
Confidence 4445689999987
No 7
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=12.41 E-value=1.2e+02 Score=23.14 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.6
Q ss_pred ceeeeecHhHHHHHHHHHH
Q 024467 210 SIYIPVTRAEYTVLVSAFN 228 (267)
Q Consensus 210 ~i~IPVT~gEfaVlrsl~~ 228 (267)
.=.|++|..|+++|+.+++
T Consensus 59 gKGITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 59 GKGITLSNEEFQTMVDAFK 77 (79)
T ss_dssp CCCEEECHHHHHHHHHHHH
T ss_pred cCccccCHHHHHHHHHHHc
Confidence 3478999999999999986
No 8
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=11.69 E-value=4.6e+02 Score=20.86 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=31.8
Q ss_pred CCceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceE
Q 024467 81 LPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFV 123 (267)
Q Consensus 81 ~~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~I 123 (267)
+-.|-|.+|||=|..-++.+.- -|..-.+|.+.+.|.++-
T Consensus 40 egn~YY~GYTVkKdd~~~~ih~---PfikdedG~La~ekqeWT 79 (103)
T 1ylx_A 40 EGNRYYVGYTINKDDEMITIHM---PFVKNERGELALEKQEWT 79 (103)
T ss_dssp STTEEEEEEEEEETTEEEEEEE---EEEECTTSCEEECCSCEE
T ss_pred CCceEEEEEEEccCCeEEEEec---cceecCCCceeeecceeE
Confidence 4578999999999999888763 277888888888777653
No 9
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=10.58 E-value=1e+02 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=27.9
Q ss_pred eeecHhHHHHHHHHHHhhhhhhhc-hhhhhccC
Q 024467 213 IPVTRAEYTVLVSAFNFILPYLLG-WHAYASTI 244 (267)
Q Consensus 213 IPVT~gEfaVlrsl~~ysLP~LLG-Wda~~n~~ 244 (267)
.-|+...|.++.+.+-..|...|| |+.++..+
T Consensus 109 ~~V~p~~f~~~~~~Ll~~l~~~lg~W~k~~~~v 141 (149)
T 2lhb_A 109 FQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMI 141 (149)
T ss_dssp SCCCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 457889999999999999999999 99987644
No 10
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=9.96 E-value=80 Score=24.92 Aligned_cols=14 Identities=57% Similarity=1.144 Sum_probs=10.9
Q ss_pred ecCcccccccccce
Q 024467 129 PAAGVRQYDWSRKQ 142 (267)
Q Consensus 129 Pa~g~rqYDW~kKq 142 (267)
|+.--|.|+|+.|.
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 66667999999873
Done!