Query 024467
Match_columns 267
No_of_seqs 59 out of 61
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 08:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024467.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024467hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l3aa_ d.18.1.2 (A:) Plant tr 100.0 1.8E-66 1.3E-70 444.3 20.1 166 82-247 1-166 (166)
2 d1aoca_ g.17.1.5 (A:) Coagulog 61.9 2.2 0.00016 34.2 2.8 53 85-144 77-129 (175)
3 d1ylxa1 d.82.5.1 (A:1-100) Hyp 18.0 1.2E+02 0.0085 22.2 5.6 40 81-123 37-76 (100)
4 d1vqo11 g.41.8.2 (1:1-56) Ribo 15.9 22 0.0016 24.1 0.9 13 129-141 41-53 (56)
5 d1jjcb3 b.40.4.4 (B:39-151) Do 10.0 1.8E+02 0.013 21.1 4.7 21 178-200 8-28 (113)
6 d1hyha2 d.162.1.1 (A:167-329) 8.9 2.4E+02 0.018 20.0 5.2 49 182-230 104-152 (163)
7 d2bv3a3 d.14.1.1 (A:479-599) E 8.4 95 0.0069 22.5 2.5 15 180-194 31-45 (121)
8 d1svya_ d.109.1.1 (A:) Severin 8.1 1.6E+02 0.012 19.7 3.6 45 82-130 3-47 (102)
9 d2i9ua1 b.92.1.4 (A:9-66,A:377 7.8 1E+02 0.0075 21.9 2.4 32 90-124 3-34 (109)
10 d1dn0b2 b.1.1.2 (B:121-225) Im 7.5 3.1E+02 0.022 18.4 4.9 99 96-215 4-105 (105)
No 1
>d1l3aa_ d.18.1.2 (A:) Plant transcriptional regulator PBF-2 {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=100.00 E-value=1.8e-66 Score=444.27 Aligned_cols=166 Identities=79% Similarity=1.308 Sum_probs=164.1
Q ss_pred CceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEEeecCcccccccccceEEEEehhhhhhhhhccccc
Q 024467 82 PTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARE 161 (267)
Q Consensus 82 ~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeFAPa~g~rqYDW~kKq~FsLS~tEvG~LLsl~~~~ 161 (267)
++|+|++|+||||||||+|+|++|+|+.+++|+++|+|+|+|||||+|++|+|||||+|||+|+||++|||+||+|++++
T Consensus 1 ~~r~y~~ysIyk~kaal~ikpi~P~f~~~~ng~~~v~k~G~illef~p~~g~r~YDw~~K~~f~Ls~~e~g~llsl~~~~ 80 (166)
T d1l3aa_ 1 TPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKD 80 (166)
T ss_dssp CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHTCCTTC
T ss_pred CCccccceEEECCceEEEEEecCCceEEcCCCcEEEccCCEEEEEEccccCccccchhhCeeEEeCHHHHHHHHhhccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCCCCCceeeEEEEeeCCCCCcceEEEeEeecccCCCcceeeeecHhHHHHHHHHHHhhhhhhhchhhhh
Q 024467 162 SCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFILPYLLGWHAYA 241 (267)
Q Consensus 162 s~EffHdP~~g~s~eG~v~K~LkIeP~pdgsG~F~nLsV~nk~~~~de~i~IPVT~gEfaVlrsl~~ysLP~LLGWda~~ 241 (267)
+|||||||.|+++++|+++|+||+||+|||+|+|++++|+|+..+.+|+++||||+|||+|||++|+|+||||||||+++
T Consensus 81 s~~ffhdp~~~~s~~g~i~K~lk~~P~pdg~g~f~~l~v~~~~~~~~e~~~Vpvt~~Ef~v~~~~~~~~lP~LlGW~~~~ 160 (166)
T d1l3aa_ 81 SCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGWHTAV 160 (166)
T ss_dssp CEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTEEEEEEEEEEHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cceeecCcccccccCCceeEEEEeeecCCCCccEEEEEecccccCccceEEEeecHHHHHHHHHHHHHhhhHhhChHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 024467 242 STIRAD 247 (267)
Q Consensus 242 n~~~~~ 247 (267)
|+++||
T Consensus 161 ~~~~~~ 166 (166)
T d1l3aa_ 161 NSFKPE 166 (166)
T ss_dssp TTCSCC
T ss_pred hccCCC
Confidence 999996
No 2
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=61.91 E-value=2.2 Score=34.16 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=43.8
Q ss_pred eeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEEeecCcccccccccceEE
Q 024467 85 VYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVF 144 (267)
Q Consensus 85 vy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeFAPa~g~rqYDW~kKq~F 144 (267)
-|.+|+-|+..+-.+++..-|.|.-.-+|.+. |++ =||.+|-||--|+.|-.|
T Consensus 77 nf~pf~hf~secpvs~~~cep~fgyt~~~e~r------iiv-qap~agfrqcvwqhkcr~ 129 (175)
T d1aoca_ 77 NFPPFTHFKSECPVSTRDCEPVFGYTVAGEFR------VIV-QAPRAGFRQCVWQHKCRF 129 (175)
T ss_dssp GSTTCCCCSSBCCEEEECCCCSEEEBTTCCEE------EEC-CBTTTTBCBCCCEEEETT
T ss_pred cCCCcccCcccCCcccccccccccceecceEE------EEE-eCCchhhHHHHHhhhccc
Confidence 46789999999999999999999877666664 333 489999999999988654
No 3
>d1ylxa1 d.82.5.1 (A:1-100) Hypothetical protein, GK1464 ortholog {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.02 E-value=1.2e+02 Score=22.21 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=32.0
Q ss_pred CCceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceE
Q 024467 81 LPTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFV 123 (267)
Q Consensus 81 ~~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~I 123 (267)
+-.|-|.+|+|=|..-++.+.- -|..-.+|.+...+.++-
T Consensus 37 qg~rYY~GyTi~KD~~~~~iH~---Pf~k~e~G~l~~~~q~WT 76 (100)
T d1ylxa1 37 EGNRYYVGYTINKDDEMITIHM---PFVKNERGELALEKQEWT 76 (100)
T ss_dssp STTEEEEEEEEEETTEEEEEEE---EEEECTTSCEEECCSCEE
T ss_pred cCceEEEEEEEccCCcEEEEec---ccccccCCceeeccCcce
Confidence 4679999999999999988763 378888888877776653
No 4
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=15.87 E-value=22 Score=24.07 Aligned_cols=13 Identities=38% Similarity=0.854 Sum_probs=9.5
Q ss_pred ecCcccccccccc
Q 024467 129 PAAGVRQYDWSRK 141 (267)
Q Consensus 129 Pa~g~rqYDW~kK 141 (267)
|+.--|.|+|++|
T Consensus 41 ~s~k~R~ynW~~K 53 (56)
T d1vqo11 41 KSAKRRDYEWQSK 53 (56)
T ss_dssp TCSSCCCCGGGSC
T ss_pred cccceecccchhc
Confidence 3444589999987
No 5
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=9.99 E-value=1.8e+02 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=14.5
Q ss_pred ceeeEEEEeeCCCCCcceEEEeE
Q 024467 178 KVRKVLKVEPLPDGSGHFFNLSV 200 (267)
Q Consensus 178 ~v~K~LkIeP~pdgsG~F~nLsV 200 (267)
.+.|+++++|+|++ +...+.|
T Consensus 8 vvg~I~~~~~hP~~--kL~~~~V 28 (113)
T d1jjcb3 8 VFARVLEAHPIPGT--RLKRLVL 28 (113)
T ss_dssp EEEEEEEEEECTTS--SCEEEEE
T ss_pred EEEEEEEeEeCCCC--cEEEEEE
Confidence 56789999999964 5344444
No 6
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Probab=8.92 E-value=2.4e+02 Score=20.04 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=34.5
Q ss_pred EEEEeeCCCCCcceEEEeEeecccCCCcceeeeecHhHHHHHHHHHHhh
Q 024467 182 VLKVEPLPDGSGHFFNLSVQNKLINLDESIYIPVTRAEYTVLVSAFNFI 230 (267)
Q Consensus 182 ~LkIeP~pdgsG~F~nLsV~nk~~~~de~i~IPVT~gEfaVlrsl~~ys 230 (267)
++.+...-++.|.||..=|..+...+.+.+.++++..|-+.|+.....+
T Consensus 104 ~~~~s~~~~~~~~~~s~Pv~ig~~Gv~~v~~l~Ls~~E~~~l~~s~~~l 152 (163)
T d1hyha2 104 ELVVSNRRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYI 152 (163)
T ss_dssp EEEEEEECTTTCSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred eeeeceecCCcceEEEeEEEEcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4444455566677887767666665667788899999999887665543
No 7
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]}
Probab=8.41 E-value=95 Score=22.51 Aligned_cols=15 Identities=60% Similarity=0.986 Sum_probs=13.2
Q ss_pred eeEEEEeeCCCCCcc
Q 024467 180 RKVLKVEPLPDGSGH 194 (267)
Q Consensus 180 ~K~LkIeP~pdgsG~ 194 (267)
.-.|+|||++.|+|.
T Consensus 31 ~V~l~veP~~~g~g~ 45 (121)
T d2bv3a3 31 HVKIKVEPLPRGSGF 45 (121)
T ss_dssp EEEEEEEECSTTCCE
T ss_pred EEEEEEEEeeCCCCc
Confidence 567999999999985
No 8
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=8.10 E-value=1.6e+02 Score=19.72 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=32.1
Q ss_pred CceeeecceEEeCceeEEEeecCCceeecCCcceEEeeeceEEEEEeec
Q 024467 82 PTRVYVGHSIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVMLQFAPA 130 (267)
Q Consensus 82 ~~Rvy~~ysVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~ILLeFAPa 130 (267)
.+|.|. | +|+..+.+..++++...++++..=+--.|..+.-|...
T Consensus 3 ~pRL~~---v-~G~~~~~~~ev~~~~~~L~s~dvfILd~~~~iyvW~G~ 47 (102)
T d1svya_ 3 KPRLLH---I-SGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGS 47 (102)
T ss_dssp SCEEEE---E-ECTTSCEEEEECSSGGGCBTTSEEEEECSSEEEEEECT
T ss_pred CcEEEE---E-ECCCceEEEEecCCHHHcCCCCeEEEEcCCEEEEEECC
Confidence 467765 5 57778888889999999999875444456666666554
No 9
>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}
Probab=7.83 E-value=1e+02 Score=21.86 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=19.6
Q ss_pred eEEeCceeEEEeecCCceeecCCcceEEeeeceEE
Q 024467 90 SIYKGKAALTVEPRGPEFVSLDSGAVKLSREGFVM 124 (267)
Q Consensus 90 sVYKgKAALsv~pi~P~F~~~~sG~~kv~R~G~IL 124 (267)
-|+||+...+-++. .|+...++ +.+.++|.+-
T Consensus 3 ~i~kGni~~~~~~~--~f~~m~~a-y~v~~~~~~~ 34 (109)
T d2i9ua1 3 KIFKGNLIFTKTSD--KFTIMKDS-YIVVIDGKIA 34 (109)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEE-EEEEETTEEE
T ss_pred eEEeccEEecCCcc--HHHHHHhh-hhhhhcCccc
Confidence 47888766665554 47766663 4456666554
No 10
>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.45 E-value=3.1e+02 Score=18.37 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred eeEEEeecCCceeecC-CcceEEeeeceEEEEEeecCcccccccccceEEEEehhhhhhhhhccccccceeeecCCCCCC
Q 024467 96 AALTVEPRGPEFVSLD-SGAVKLSREGFVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSLVALGARESCEFFHDPFKGKS 174 (267)
Q Consensus 96 AALsv~pi~P~F~~~~-sG~~kv~R~G~ILLeFAPa~g~rqYDW~kKq~FsLS~tEvG~LLsl~~~~s~EffHdP~~g~s 174 (267)
+|=+|.|..|.-.... ++.+ --++++-.|.|.. -..-|.+... .........|-...+
T Consensus 4 ~~P~V~~l~p~~~~~~~~~~~---~l~Cl~~gF~P~~--i~v~W~~~~~----------------~~~~~~~~~~~~~~~ 62 (105)
T d1dn0b2 4 SAPTLFPLVSCENSPSDTSSV---AVGCLAQDFLPDS--ITFSWKYKNN----------------SDISSTRGFPSVLRG 62 (105)
T ss_dssp BCCEEEEEECC------CCSE---EEEEEEEEEBSSC--CEEEEEETTS----------------CEECCEEECCCEEET
T ss_pred cCCeEEeECCCccccCCCCce---EEEEEEecccCCc--EEEEEEECCc----------------cccCCEEcceEEccC
Confidence 3445666666666543 3333 3689999999973 4566753211 000001111111111
Q ss_pred CCCceeeEEEEeeCC--CCCcceEEEeEeecccCCCcceeeee
Q 024467 175 EEGKVRKVLKVEPLP--DGSGHFFNLSVQNKLINLDESIYIPV 215 (267)
Q Consensus 175 ~eG~v~K~LkIeP~p--dgsG~F~nLsV~nk~~~~de~i~IPV 215 (267)
+.-...-.|.|.... .|.+.-+.|.|.-...+...++.+||
T Consensus 63 gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~v~~pv 105 (105)
T d1dn0b2 63 GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV 105 (105)
T ss_dssp TEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred CCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEeEEeccC
Confidence 112344566665543 22333478888766655545555554
Done!