BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024468
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 128/251 (50%), Gaps = 19/251 (7%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKW 74
+ + L T D +A ++ ERG I L+GG I L+ L + +DW
Sbjct: 13 YADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDVASG--LDWTNV 70
Query: 75 YIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEY--EFDI 132
++FW D+R V K + N A E LL + V ++H++ +S S EY + D
Sbjct: 71 HVFWGDDRYVPKTDPERNAWQAWEALL-EHVNFPLRNMHAMPNSES------EYGTDLDA 123
Query: 133 RQLVKTRMVCVS--DISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPK 190
L +++ + DCP FD+ LLGMG +GH+ SLFP+ + + V + DSPK
Sbjct: 124 AALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAVPDSPK 183
Query: 191 PPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGP-NCPSLPARMAQPTNGKLV 249
PPP+RIT TLP I + +GE+KA+AV A+ P + P+ A+ + T V
Sbjct: 184 PPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERT----V 239
Query: 250 WFLDKPAASKL 260
W LD+ AAS+L
Sbjct: 240 WLLDEAAASQL 250
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 13/225 (5%)
Query: 41 RGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99
RG I L+GG + I L+ L + ++W+K ++FW DER V ++ + N K A+
Sbjct: 54 RGQALIVLTGGGNGIALLRYLSA--QAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRA 111
Query: 100 LLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISD--CPKFDLILL 157
LL+ V I + VH ++A + + D L +++ S P FD+ LL
Sbjct: 112 LLN-HVDIPSNQVHP----MAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLL 166
Query: 158 GMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXTGES 217
GMG +GH+ SLFP+ + + V + DSPKPPP RIT TLP I + +G
Sbjct: 167 GMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPG 226
Query: 218 KAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQS 262
KA+AV AI G + S+PA A L W LD+ AA+KL S
Sbjct: 227 KADAVAAAIG--GADPVSVPAAGAVGRQNTL-WLLDRDAAAKLPS 268
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 11/235 (4%)
Query: 27 ADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86
D + D +++ ERG I L+GG + K + +DW+K +I+W DER V +
Sbjct: 24 GDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRE-RSGEIDWSKVHIYWGDERFVPQ 82
Query: 87 NHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDI 146
+ + N K A+E LL + I P +VH++ + S E D+ E + ++ +
Sbjct: 83 DDDERNDKQAREALLD-HIGIPPVNVHAM--AASDGEFGDDLEAAAAGYAQ--LLSANFD 137
Query: 147 SDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSA 206
S P FD+ LLGMG +GHV SLFP+ + + V ++DSPKPPP RIT TLP + ++
Sbjct: 138 SSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNS 197
Query: 207 SIXXXXXTGESKAEAVHLAIDDLGP-NCPSLPARMAQPTNGKLVWFLDKPAASKL 260
+GE+KA+AV A+ P + P+ A + T VW +D+ AA+KL
Sbjct: 198 REVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERT----VWLVDEAAAAKL 248
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 46 IALSGGSLIGLMGKLCEA-PYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQ 104
I+LSGGS + KL + PY + W + +W DER VA + ++SNY A L SK
Sbjct: 33 ISLSGGSTPKXLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSK- 91
Query: 105 VPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGH 164
+ ++H I + A+ + ++ T + P FD ILLG+G+DGH
Sbjct: 92 INXPAQNIHRILGENEPQAEAERFAQAXAHVIPTE-------NGTPVFDWILLGVGADGH 144
Query: 165 VASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHL 224
ASLFP + D + +S + P+ R++ T V+ +A G KAE V
Sbjct: 145 TASLFPGQT--DYADANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQ 202
Query: 225 AIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKL 260
P PA T+G W+LD AA+K+
Sbjct: 203 IHTTPAEQLP-YPAAKIHSTSGVTEWYLDSDAAAKI 237
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 17/261 (6%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLCEAPYNKTVDW 71
+ +H + +ELS I ++ EAS ++ +IAL+GGS + +L + N +
Sbjct: 6 ISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREK 65
Query: 72 AKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVP---IVPSHVHSINDSLSAEEA---- 124
F DER+V + +DSNY +A+E LL +P + P ++ S A A
Sbjct: 66 RALRFFMGDERMVPADSTDSNYNMAREVLL-HDIPDDLVFPFDTSAVTPSAEATSADAMR 124
Query: 125 -ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW-- 181
A+ Y + L+ + V + P FD++LLG+GSDGH AS+FP +
Sbjct: 125 VAEAYGKQLASLLPLKSVGEAG-PKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVV 183
Query: 182 --VSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPAR 239
V F +++ KP R+T + I A TG K V + D P AR
Sbjct: 184 VSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPV--AR 241
Query: 240 MAQPTNGKLVWFLDKPAASKL 260
+ G + + LDK A L
Sbjct: 242 FLRGCEGNVSFLLDKEIAENL 262
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 17/261 (6%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLCEAPYNKTVDW 71
+ +H + +ELS I ++ EAS ++ +IAL+GGS + +L + N +
Sbjct: 7 ISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREK 66
Query: 72 AKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVP---IVPSHVHSINDSLSAEEA---- 124
F DER+V + +DSNY +A+E LL +P + P ++ S A A
Sbjct: 67 RALRFFMGDERMVPADSTDSNYNMAREVLL-HDIPDDLVFPFDTSAVTPSAEATSADAMR 125
Query: 125 -ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW-- 181
A+ Y + L+ + V + P FD++LLG+GSDGH AS+FP +
Sbjct: 126 VAEAYGKQLASLLPLKSVGEAG-PKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVV 184
Query: 182 --VSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPAR 239
V F +++ KP R+T + I A TG K V + D P AR
Sbjct: 185 VSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPV--AR 242
Query: 240 MAQPTNGKLVWFLDKPAASKL 260
+ G + + LDK A L
Sbjct: 243 FLRGCEGNVSFLLDKEIAENL 263
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 35 EASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNY 93
E ++E+ + L+GG + + KL E + W + + F +DER V + SN+
Sbjct: 38 EKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKF----PWNRIHFFLSDERYVPLDSDQSNF 93
Query: 94 KLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFD 153
+ E L S+ I +VH ++ SL E+A ++YE +IR S +FD
Sbjct: 94 RNINEVLFSR-AKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQFD 139
Query: 154 LILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXX 213
L +LGMG DGHVAS+F + K+ V+F S P R+T T +N++
Sbjct: 140 LAILGMGPDGHVASIFDLET--GNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLI 197
Query: 214 TGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDK 254
G+ K + + D LPA + K VWF+ K
Sbjct: 198 RGKEKINRLTEILKD-----TPLPAYFVRGKE-KTVWFVGK 232
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 26/212 (12%)
Query: 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLS 102
+F + G + + + KL E + W + + F +DER V + SN++ E L S
Sbjct: 57 IFVVLAGGRTPLPVYEKLAEQKF----PWNRIHFFLSDERYVPLDSDQSNFRNINEVLFS 112
Query: 103 KQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD 162
+ I +VH ++ SL E+A ++YE +IR S +FDL +LG G D
Sbjct: 113 R-AKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQFDLAILGXGPD 158
Query: 163 GHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAV 222
GHVAS+F + K+ V+F S P R+T T +N++ G+ K +
Sbjct: 159 GHVASIFDLET--GNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRL 216
Query: 223 HLAIDDLGPNCPSLPARMAQPTNGKLVWFLDK 254
+ D LPA + K VWF+ K
Sbjct: 217 TEILKD-----TPLPAYFVRGKE-KTVWFVGK 242
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 49/243 (20%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKW 74
+E+ E + +LAD +AD + ++ E+G +A+SGG S I L + K +DW
Sbjct: 8 YENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQ----KDLDWKNV 63
Query: 75 YIFWADERVVAKNHSDSNYKLAKEGLLSKQ------VPIVPSHVHSINDSLSAEEAADEY 128
I ADER+V NH+DSN L +E LL + +P V E+ E
Sbjct: 64 GITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPXV-------------EDGKTET 110
Query: 129 EFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPN----HSVLDVKNQWVSF 184
E +V + + D+++LG G+DGH AS+FP + +D + V+
Sbjct: 111 ELHPDAVVDYAL------KHYKQPDVLILGXGNDGHTASIFPKAPQFQTAID-GSAGVAL 163
Query: 185 ITDSP-KPPPERITFTLPVI-------------NSASIXXXXXTGESKAEAVHLAIDDLG 230
+ +P P ERI+ TL I ++ GE++ + L ++ G
Sbjct: 164 VHTTPVTAPHERISXTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGENREYPISLVLNHQG 223
Query: 231 PNC 233
NC
Sbjct: 224 VNC 226
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase
(Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043
At 1.88 A Resolution
Length = 226
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 23/232 (9%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWY 75
E + L+ LAD +A EA + +R + +SGGS A K + WA+
Sbjct: 7 QEGRQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAA---KALPWARVD 63
Query: 76 IFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQL 135
+ ADER V + +DSN +L +E LL P + H + EA E
Sbjct: 64 VTLADERWVTADDADSNARLVRETLLVG--PAAEACFHPLTTDDDTPEAGVET------- 114
Query: 136 VKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVS--FITDSPKPPP 193
V R+ + + ++LG G DGH ASLFP+ L + S + +P P
Sbjct: 115 VAERLESLPWPASA-----VILGXGGDGHTASLFPDSEQLATALETTSAAVVVHAPSVPQ 169
Query: 194 ERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPAR--MAQP 243
RIT + + A + TG K + A+ G + LP R ++QP
Sbjct: 170 ARITLSASRLADAGLHVLHITGNDKRRVLAEAL--AGDDVRQLPIRAFLSQP 219
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 21/224 (9%)
Query: 22 LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81
L LA IA + +V RG ++ +SGGS KL + K++DW+ YI ADE
Sbjct: 17 LEQQLASKIASQLQEAVDARGKASLVVSGGST---PLKLFQLLSXKSIDWSDVYITLADE 73
Query: 82 RVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMV 141
R V + SN +L +E LL + + + + S EA
Sbjct: 74 RWVEADADASNERLVREHLLQNRAS--NAKFRGLKNXFSTAEA-------------GADX 118
Query: 142 CVSDISDCPK-FDLILLGMGSDGHVASLFPNHSVLD--VKNQWVSFITDSPKPPPERITF 198
+S+ P+ FD+++LG G+DGH S FP + L+ + Q + T+ P RIT
Sbjct: 119 AAESLSNFPRPFDVVVLGXGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITL 178
Query: 199 TLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQ 242
+ I ++ GE K A++ + + A +AQ
Sbjct: 179 SKSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAXPIRAVLAQ 222
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 26/263 (9%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWA 72
++I E++ ++S + I +A V + +ALSGGS +L E + K +
Sbjct: 8 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGST---PKRLYEELHEKDLALL 64
Query: 73 KWY---IFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADE-- 127
+ + DER+++++ SN+ +A + LL + VP S V SI+ + + DE
Sbjct: 65 QQHAVQFILGDERLLSEDDEQSNFSMATKALL-RDVP--SSDVISIDRRAALATSKDEKG 121
Query: 128 -----------YEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD 176
YE + + + + + S P D++LLG GSDGH AS+FP+
Sbjct: 122 GLDGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDSVAAT 180
Query: 177 VKNQWVSFITDSPKPPPE--RITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCP 234
+ VS SP P+ R+T + VI A G+ K V + + P P
Sbjct: 181 DEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSE-SPTDP 239
Query: 235 SLPARMAQPTNGKLVWFLDKPAA 257
+R + G + LD A
Sbjct: 240 LPVSRFLRDCRGSVTLLLDPGAG 262
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 26/263 (9%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWA 72
++I E++ ++S + I +A V + +ALSGGS +L E + K +
Sbjct: 7 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGST---PKRLYEELHEKDLALL 63
Query: 73 KWY---IFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADE-- 127
+ + DER+++++ SN+ +A + LL + VP S V SI+ + + DE
Sbjct: 64 QQHAVQFILGDERLLSEDDEQSNFSMATKALL-RDVP--SSDVISIDRRAALATSKDEKG 120
Query: 128 -----------YEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD 176
YE + + + + + S P D++LLG GSDGH AS+FP+
Sbjct: 121 GLDGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDSVAAT 179
Query: 177 VKNQWVSFITDSPKPPPE--RITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCP 234
+ VS SP P+ R+T + VI A G+ K V + + P P
Sbjct: 180 DEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSE-SPTDP 238
Query: 235 SLPARMAQPTNGKLVWFLDKPAA 257
+R + G + LD A
Sbjct: 239 LPVSRFLRDCRGSVTLLLDPGAG 261
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 39 KERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKE 98
KE G I LSGG + K + +D +K F DER +H SNY K
Sbjct: 57 KEGGHVVIGLSGGKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKF 116
Query: 99 GLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLG 158
S ++ ++ + S + E +Y I+ VK K D+ +LG
Sbjct: 117 LFESLKIN-EKEQLYRPDTSKNIVECVRDYNEKIKNXVKKY----------TKVDIAILG 165
Query: 159 MGSDGHVASLFPN-------------------------------HSVLDVKNQWVSFITD 187
GSD H+ASLFPN + LD+ ++V F T
Sbjct: 166 XGSDFHIASLFPNIFFNIYXNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTT 225
Query: 188 SPKPPPERITFTLPVINSAS 207
+ +RIT +L ++ +AS
Sbjct: 226 NNFDVRKRITVSLDLLGNAS 245
>pdb|2RI0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
pdb|2RI0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
Length = 234
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 153 DLILLGMGSDGHVA-----SLFPNHS-VLDVKNQWVS----FITDSPKPPPERITFTLPV 202
DL +LG+G + H+ + F + + ++D+ ++ F + P + I+ L
Sbjct: 120 DLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLAS 179
Query: 203 INSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKL 260
I SA + GE KAEAV + GP +PA + Q T+ K++ +D+ A + +
Sbjct: 180 IMSAKMILLMAFGEEKAEAVAAMVK--GPVTEEIPASILQ-THPKVILIVDEKAGAGI 234
>pdb|2RI1|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
pdb|2RI1|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
Length = 235
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 153 DLILLGMGSDGHVA-----SLFPNHS-VLDVKNQWVS----FITDSPKPPPERITFTLPV 202
DL +LG+G + H+ + F + + ++D+ ++ F + P + I+ L
Sbjct: 121 DLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLAS 180
Query: 203 INSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKL 260
I SA + GE KAEAV + GP +PA + Q T+ K++ +D+ A + +
Sbjct: 181 IMSAKMILLMAFGEEKAEAVAAMVK--GPVTEEIPASILQ-THPKVILIVDEKAGAGI 235
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 30/233 (12%)
Query: 11 GELR--IHESVEELSTNLADYIAD-LSEASVKERGVFAIAL-SGGSLIGLMGKLCEAPYN 66
G +R I + E++S A+++A ++E S + F + L +G S IG+ L E N
Sbjct: 20 GSMRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKN 79
Query: 67 KTVDWAKWYIFWADERV-VAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAA 125
K + + F DE + + +NH +S + S + I +++ +N + S
Sbjct: 80 KKISFQNVITFNMDEYIGIEENHPESYHSFMWNNFFS-HIDIKKENINILNGNAS----- 133
Query: 126 DEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD-------VK 178
L K I L + G+G DGH+A P S+ +
Sbjct: 134 --------NLKKECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQ 185
Query: 179 NQWVS----FITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAID 227
+ ++ F D K P +T + I + G +KA A+ AI+
Sbjct: 186 DTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIE 238
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 32/232 (13%)
Query: 44 FAIALSGGSL-IGLMGKLCEAPYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKEGLL 101
F + L GS +G KL E N + + F DE V + ++H +S +
Sbjct: 35 FTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFF 94
Query: 102 SKQVPIVPSHVHSIN-DSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMG 160
K + I P + H ++ +++ + D +E I +L + G+G
Sbjct: 95 -KHIDIHPENTHILDGNAVDLQAECDAFE--------------EKIKAAGGIELFVGGIG 139
Query: 161 SDGHVASLFPNHSVLD---VKNQWVS--------FITDSPKPPPERITFTLPVINSASIX 209
DGH+A P S++ VK + F + K P +T + + A
Sbjct: 140 PDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREV 199
Query: 210 XXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ 261
TG KA A++ AI++ + ++ A P + V+ D+ A +L+
Sbjct: 200 MILITGAHKAFALYKAIEEGVNHMWTVSAFQQHP---RTVFVCDEDATLELK 248
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 33/254 (12%)
Query: 17 ESVEELSTNLADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKW 74
++ EELS A AD ++KE+ V +A +GG+ G +L + + +
Sbjct: 7 QTYEELSQIAARITAD----TIKEKPDAVLGLA-TGGTPEGTYRQLIRLHQTENLSFQNI 61
Query: 75 YIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQ 134
DE + ++Y + + PS H I + AD+ E + R+
Sbjct: 62 TTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSR-HFIPNG-----NADDLEAECRR 115
Query: 135 LVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHS------VLDVKNQW----VSF 184
+ V + D D+ LLG+G +GH+ P S V+ + Q +
Sbjct: 116 YEQ----LVDSLGDT---DIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARY 168
Query: 185 ITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 244
P + +T + I S+ +G+SKAEAV ++ G PA A
Sbjct: 169 FPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLE--GNISEDFPAS-ALHL 225
Query: 245 NGKLVWFLDKPAAS 258
+ + +D+ AAS
Sbjct: 226 HSDVTVLIDREAAS 239
>pdb|3CTK|A Chain A, Crystal Structure Of The Type 1 Rip Bouganin
Length = 248
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 133 RQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW 181
+++ K ++ + +S+ +F I + G S PN VL+++N W
Sbjct: 150 QEIAKFFLIVIQMVSEAARFKYIETEVVDRGLYGSFKPNFKVLNLENNW 198
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 151 KFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPP 192
K+DLI++G GS G A + + L+V +TD+ PP
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNV------LMTDAHMPP 37
>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
Length = 534
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 15 IHESVEELSTNLADYIADLSEASVKERGVF-AIALSGGSLIGLMGKLC 61
IH S E+ T +A Y +D+++ S + G+F AI + L+G L
Sbjct: 367 IHASDAEIDTLMAAYTSDITQGSPFDTGIFNAITPQFKRISALLGDLA 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,866,920
Number of Sequences: 62578
Number of extensions: 309757
Number of successful extensions: 867
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 818
Number of HSP's gapped (non-prelim): 35
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)