Query 024468
Match_columns 267
No_of_seqs 155 out of 1059
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02360 probable 6-phosphoglu 100.0 8.3E-67 1.8E-71 464.6 29.0 263 1-267 1-268 (268)
2 TIGR01198 pgl 6-phosphoglucono 100.0 9.7E-65 2.1E-69 442.9 25.3 231 15-260 1-233 (233)
3 PTZ00285 glucosamine-6-phospha 100.0 7.5E-62 1.6E-66 429.7 24.4 232 11-261 1-248 (253)
4 KOG3147 6-phosphogluconolacton 100.0 2.6E-61 5.6E-66 411.2 26.1 241 10-262 8-250 (252)
5 COG0363 NagB 6-phosphogluconol 100.0 4.9E-61 1.1E-65 418.7 21.6 231 11-261 1-237 (238)
6 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 3.6E-59 7.8E-64 404.4 24.4 218 20-252 1-219 (219)
7 TIGR00502 nagB glucosamine-6-p 100.0 2.9E-58 6.3E-63 408.2 22.9 232 11-261 1-248 (259)
8 PRK09762 galactosamine-6-phosp 100.0 4.3E-58 9.4E-63 400.7 21.0 222 11-254 1-232 (232)
9 PRK12358 putative 6-phosphoglu 100.0 8.7E-56 1.9E-60 387.9 21.6 222 11-261 1-238 (239)
10 PRK02122 glucosamine-6-phospha 100.0 4.4E-55 9.6E-60 428.0 25.5 236 8-262 25-276 (652)
11 PF01182 Glucosamine_iso: Gluc 100.0 7.5E-56 1.6E-60 378.4 17.0 197 22-227 1-199 (199)
12 PRK00443 nagB glucosamine-6-ph 100.0 3.4E-47 7.4E-52 337.4 23.2 231 11-261 1-248 (261)
13 cd01399 GlcN6P_deaminase GlcN6 100.0 7.6E-45 1.6E-49 316.6 19.7 217 21-260 2-232 (232)
14 KOG3148 Glucosamine-6-phosphat 100.0 8.7E-45 1.9E-49 297.8 13.4 231 11-261 1-248 (273)
15 cd00458 SugarP_isomerase Sugar 100.0 3.2E-40 6.9E-45 275.2 16.3 168 24-252 2-169 (169)
16 COG2390 DeoR Transcriptional r 98.1 0.00021 4.5E-09 65.4 16.7 203 18-261 92-317 (321)
17 PF04198 Sugar-bind: Putative 97.8 0.00018 3.8E-09 63.9 9.4 202 20-260 32-253 (255)
18 PRK15418 transcriptional regul 97.2 0.028 6.1E-07 51.5 16.5 53 193-261 262-314 (318)
19 COG0037 MesJ tRNA(Ile)-lysidin 83.1 23 0.00049 31.5 11.6 53 31-87 7-63 (298)
20 COG0519 GuaA GMP synthase, PP- 77.5 15 0.00033 33.1 8.2 102 28-136 9-113 (315)
21 PF01171 ATP_bind_3: PP-loop f 75.1 14 0.0003 30.6 7.1 96 44-158 2-103 (182)
22 TIGR00730 conserved hypothetic 68.7 19 0.00041 30.1 6.4 46 37-83 92-138 (178)
23 PF03641 Lysine_decarbox: Poss 67.5 6.2 0.00013 31.2 3.2 45 39-83 51-96 (133)
24 PF14417 MEDS: MEDS: MEthanoge 63.1 88 0.0019 26.0 12.9 120 12-137 22-151 (191)
25 PF11019 DUF2608: Protein of u 53.1 52 0.0011 29.0 6.8 89 37-133 92-199 (252)
26 TIGR00884 guaA_Cterm GMP synth 53.0 38 0.00082 30.9 6.0 52 29-86 5-56 (311)
27 KOG0347 RNA helicase [RNA proc 52.5 40 0.00087 33.5 6.2 83 11-98 265-367 (731)
28 COG1611 Predicted Rossmann fol 47.2 78 0.0017 27.1 6.7 47 37-83 106-154 (205)
29 cd00553 NAD_synthase NAD+ synt 46.7 74 0.0016 27.7 6.7 59 18-82 2-60 (248)
30 PRK10590 ATP-dependent RNA hel 44.9 93 0.002 29.7 7.6 64 12-83 78-159 (456)
31 PRK02090 phosphoadenosine phos 44.9 51 0.0011 28.7 5.4 46 32-83 30-76 (241)
32 PLN02347 GMP synthetase 42.3 73 0.0016 31.5 6.5 53 32-89 220-272 (536)
33 COG1606 ATP-utilizing enzymes 42.1 1.1E+02 0.0023 27.4 6.8 50 32-86 8-57 (269)
34 PRK01297 ATP-dependent RNA hel 41.5 88 0.0019 30.0 6.9 65 11-83 164-247 (475)
35 KOG0331 ATP-dependent RNA heli 40.6 1.2E+02 0.0027 29.8 7.6 92 10-115 165-277 (519)
36 PRK13980 NAD synthetase; Provi 40.1 1.1E+02 0.0024 27.0 6.8 57 18-82 9-67 (265)
37 PRK00074 guaA GMP synthase; Re 39.6 82 0.0018 30.8 6.4 51 30-86 205-255 (511)
38 PLN00206 DEAD-box ATP-dependen 38.9 1.2E+02 0.0027 29.5 7.6 93 11-119 198-310 (518)
39 PF09623 Cas_NE0113: CRISPR-as 38.5 1.3E+02 0.0029 26.1 6.9 39 21-59 91-130 (224)
40 PRK10696 tRNA 2-thiocytidine b 38.4 2.7E+02 0.0059 24.3 10.7 43 40-83 28-71 (258)
41 PF00098 zf-CCHC: Zinc knuckle 38.1 21 0.00045 18.1 1.1 12 159-170 6-17 (18)
42 KOG1800 Ferredoxin/adrenodoxin 37.8 1.1E+02 0.0024 29.2 6.5 71 151-227 108-180 (468)
43 cd01993 Alpha_ANH_like_II This 37.1 1.6E+02 0.0034 23.7 7.0 39 43-82 1-40 (185)
44 PLN02772 guanylate kinase 36.7 49 0.0011 31.4 4.1 57 202-259 130-194 (398)
45 PF09793 AD: Anticodon-binding 36.5 36 0.00079 25.0 2.7 42 49-91 29-73 (91)
46 PTZ00110 helicase; Provisional 35.7 97 0.0021 30.5 6.3 64 12-83 206-287 (545)
47 COG0513 SrmB Superfamily II DN 35.2 99 0.0021 30.2 6.2 66 12-82 102-183 (513)
48 TIGR00273 iron-sulfur cluster- 35.1 2.3E+02 0.005 27.2 8.5 106 7-137 61-180 (432)
49 KOG3363 Uncharacterized conser 35.0 25 0.00054 29.1 1.7 22 150-171 110-131 (196)
50 PF14824 Sirohm_synth_M: Siroh 34.5 41 0.00088 19.7 2.1 16 41-56 2-18 (30)
51 TIGR01307 pgm_bpd_ind 2,3-bisp 33.7 4.3E+02 0.0093 26.0 10.1 116 14-132 71-203 (501)
52 PRK00876 nadE NAD synthetase; 33.2 1.9E+02 0.0041 26.6 7.4 60 18-82 11-70 (326)
53 PTZ00323 NAD+ synthase; Provis 33.1 64 0.0014 29.3 4.2 33 18-52 25-57 (294)
54 cd00293 USP_Like Usp: Universa 33.0 1.9E+02 0.0041 20.9 6.7 22 151-172 93-114 (130)
55 TIGR02432 lysidine_TilS_N tRNA 32.5 2.7E+02 0.0059 22.6 8.5 39 43-83 1-39 (189)
56 COG0171 NadE NAD synthase [Coe 31.8 2.9E+02 0.0063 24.7 8.1 65 18-84 4-68 (268)
57 PRK00768 nadE NAD synthetase; 31.8 67 0.0014 28.8 4.0 32 18-51 17-48 (268)
58 PRK04837 ATP-dependent RNA hel 31.7 2E+02 0.0044 27.0 7.6 27 54-83 141-167 (423)
59 PRK00919 GMP synthase subunit 31.5 1.3E+02 0.0029 27.4 6.0 51 32-88 13-63 (307)
60 TIGR03642 cas_csx13 CRISPR-ass 31.3 1.6E+02 0.0035 23.1 5.7 35 25-59 72-108 (124)
61 TIGR00268 conserved hypothetic 31.1 1.4E+02 0.0031 26.0 6.0 43 33-81 4-46 (252)
62 PRK11192 ATP-dependent RNA hel 30.5 1.6E+02 0.0034 27.7 6.6 63 13-83 77-157 (434)
63 TIGR01536 asn_synth_AEB aspara 30.5 4E+02 0.0087 25.4 9.5 45 18-62 230-274 (467)
64 COG1205 Distinct helicase fami 30.3 1.8E+02 0.0039 30.5 7.4 113 13-131 119-255 (851)
65 TIGR00552 nadE NAD+ synthetase 30.1 2.5E+02 0.0055 24.4 7.4 35 27-61 6-42 (250)
66 TIGR00434 cysH phosophoadenyly 28.9 1.3E+02 0.0028 25.4 5.2 42 34-81 5-47 (212)
67 PRK11776 ATP-dependent RNA hel 28.2 2.2E+02 0.0047 27.1 7.2 64 12-83 75-157 (460)
68 PF02540 NAD_synthase: NAD syn 28.2 66 0.0014 28.2 3.3 53 25-83 4-56 (242)
69 PRK05253 sulfate adenylyltrans 28.1 1.9E+02 0.004 26.3 6.3 49 32-83 18-67 (301)
70 PRK11634 ATP-dependent RNA hel 26.0 3.1E+02 0.0066 27.7 8.0 63 13-82 78-158 (629)
71 TIGR00329 gcp_kae1 metallohydr 25.3 1.1E+02 0.0023 27.7 4.3 37 24-60 240-277 (305)
72 PRK05434 phosphoglyceromutase; 25.2 6.6E+02 0.014 24.7 9.9 117 14-133 75-208 (507)
73 PRK10660 tilS tRNA(Ile)-lysidi 25.0 89 0.0019 29.9 3.9 51 32-83 6-56 (436)
74 cd01997 GMP_synthase_C The C-t 25.0 2.5E+02 0.0055 25.4 6.6 51 43-98 1-51 (295)
75 TIGR03723 bact_gcp putative gl 24.3 1.1E+02 0.0024 27.9 4.2 38 24-61 241-279 (314)
76 cd07939 DRE_TIM_NifV Streptomy 24.3 4.8E+02 0.01 22.7 9.7 107 30-161 112-220 (259)
77 PF14639 YqgF: Holliday-juncti 24.0 89 0.0019 25.3 3.2 49 33-82 54-107 (150)
78 TIGR03722 arch_KAE1 universal 23.9 1.1E+02 0.0024 27.8 4.2 38 24-61 224-262 (322)
79 PRK06850 hypothetical protein; 23.6 2.3E+02 0.0049 27.9 6.3 43 40-83 33-79 (507)
80 TIGR02584 cas_NE0113 CRISPR-as 23.4 2E+02 0.0044 24.8 5.2 37 23-59 99-136 (209)
81 COG3969 Predicted phosphoadeno 22.7 1.4E+02 0.003 27.9 4.4 43 37-80 23-65 (407)
82 PRK09604 UGMP family protein; 22.2 1.2E+02 0.0027 27.7 4.1 66 24-96 236-303 (332)
83 PRK13981 NAD synthetase; Provi 21.7 2.8E+02 0.006 27.2 6.7 57 19-83 260-318 (540)
84 PRK06696 uridine kinase; Valid 21.6 1.3E+02 0.0027 25.6 3.9 59 19-85 3-64 (223)
85 COG3150 Predicted esterase [Ge 21.4 3E+02 0.0065 23.2 5.7 63 88-166 11-73 (191)
86 PRK15080 ethanolamine utilizat 21.1 1.9E+02 0.0041 25.5 5.0 44 20-63 199-243 (267)
87 KOG3697 Adaptor protein SHC an 21.1 2.2E+02 0.0049 25.9 5.2 73 2-82 77-151 (345)
88 TIGR02660 nifV_homocitr homoci 20.6 6.8E+02 0.015 23.1 10.0 95 43-162 128-224 (365)
89 PRK08576 hypothetical protein; 20.5 4.6E+02 0.01 25.2 7.7 60 18-83 206-270 (438)
90 PRK04537 ATP-dependent RNA hel 20.3 3.4E+02 0.0074 26.9 7.0 65 12-83 87-169 (572)
91 cd01713 PAPS_reductase This do 20.1 1.8E+02 0.004 22.6 4.3 38 43-83 1-38 (173)
No 1
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=8.3e-67 Score=464.64 Aligned_cols=263 Identities=82% Similarity=1.266 Sum_probs=231.2
Q ss_pred CCCCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeec
Q 024468 1 MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWAD 80 (267)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~D 80 (267)
||+|-|+...|++++|+|++++++.+|+.|.+.+++++++++.+.|+|||||+|..+++|.....+.++||+||+|||+|
T Consensus 1 ~~~~~~~~~~~~l~i~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS~~~~~~~L~~~~~~~~idW~~v~~f~~D 80 (268)
T PLN02360 1 MAHSYVHKDRGEIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGGSLISFMGKLCEAPYNKTVDWAKWYIFWAD 80 (268)
T ss_pred CCccccccCCceEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHhccccccCCCCceEEEEeee
Confidence 89999999999999999999999999999999999999999999999999998876667765545568999999999999
Q ss_pred eeccCCCChhhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccC
Q 024468 81 ERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMG 160 (267)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G 160 (267)
|||||.+|++||++++|++||+++ +++++|+|++++..+++++|++|+++|+++++.........+..|+||+++||||
T Consensus 81 ER~Vp~~~~~SN~~~~r~~Ll~~~-~i~~~~i~~~~~~~~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG 159 (268)
T PLN02360 81 ERVVAKNHADSNYKLAKDGLLSKV-PVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMG 159 (268)
T ss_pred cccCCCCCcchHHHHHHHHhhccC-CCChhhcccCCCCCCHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccC
Confidence 999999999999999999999999 9999999999988789999999999998864321110001112468999999999
Q ss_pred CCCceeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHh----CCCCCCccc
Q 024468 161 SDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID----DLGPNCPSL 236 (267)
Q Consensus 161 ~DGHiAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~----~~~~~~~~~ 236 (267)
+||||||||||++.+.+...+++.+.+++++|++|||||++.|++||+|+|+++|++|++++++++. +++ +.++
T Consensus 160 ~DGHtASlFPg~~~l~~~~~~v~~~~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~--~~~~ 237 (268)
T PLN02360 160 SDGHVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPD--APSL 237 (268)
T ss_pred CCCceeccCCCCchhhhccceEEeecCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCC--cccC
Confidence 9999999999998776665677666677899999999999999999999999999999999999995 443 5789
Q ss_pred cccccccCC-CeEEEEecHHHHhhccccccCC
Q 024468 237 PARMAQPTN-GKLVWFLDKPAASKLQSVQFCE 267 (267)
Q Consensus 237 Pas~l~~~~-~~~~~~~D~~Aa~~l~~~~~~~ 267 (267)
|++.|+. | ++++|++|++|++.|+++|+.|
T Consensus 238 Pas~l~~-~~~~~~w~~D~~Aa~~l~~~~~~~ 268 (268)
T PLN02360 238 PARMVQP-TKGKLVWFLDKPAASKLDGFQFSE 268 (268)
T ss_pred ChhhhcC-CCCcEEEEECHHHHhhCcccccCC
Confidence 9999994 6 4999999999999999999864
No 2
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=9.7e-65 Score=442.95 Aligned_cols=231 Identities=41% Similarity=0.636 Sum_probs=211.1
Q ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHH
Q 024468 15 IHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYK 94 (267)
Q Consensus 15 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~ 94 (267)
+|+|.+++++.+|++|.+.+++++++++.++|+||||+||+.+|+.|.. .+++|+||+|||+||||||++|++||++
T Consensus 1 v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~---~~i~w~~v~~f~~DER~Vp~~~~~SN~~ 77 (233)
T TIGR01198 1 VFSNSAELAEALAERIATKLQTALAERGQFSLALSGGRSPIALLEALAA---QPLDWSRIHLFLGDERYVPLDHADSNTG 77 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhh---CCCCcceEEEEEecccccCCCCccchHH
Confidence 5899999999999999999999999999999999999999999988775 2799999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCC
Q 024468 95 LAKEGLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHS 173 (267)
Q Consensus 95 ~l~~~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~ 173 (267)
++|++||+++ ++|++|+|++++.. +++++|++|++.|+++++.. ..|.||+++||||+||||||||||++
T Consensus 78 ~~~~~Ll~~~-~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~--------~~p~fDl~lLGmG~DGHtASlFPg~~ 148 (233)
T TIGR01198 78 LAREALLDRV-AIPASNIHPMPTELSDIEEAAELYEQELAAAFQPI--------VFPVFDLLLLGMGPDGHTASLFPHTP 148 (233)
T ss_pred HHHHHHhccC-CCChhheeeCCCccCCHHHHHHHHHHHHHHhhccc--------CCCcccEEEECCcCCccceeCCCCCh
Confidence 9999999999 99999999999876 79999999999999875321 24679999999999999999999999
Q ss_pred ccccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHh-CCCCCCccccccccccCCCeEEEEe
Q 024468 174 VLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID-DLGPNCPSLPARMAQPTNGKLVWFL 252 (267)
Q Consensus 174 ~~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~-~~~~~~~~~Pas~l~~~~~~~~~~~ 252 (267)
.+.+.+.++....++|++|++|||||++.|++||+|+|+++|++|+++++++++ ++. +.++|++.++ .|++++||+
T Consensus 149 ~l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~--~~~~Pas~l~-~~~~~~~~~ 225 (233)
T TIGR01198 149 ALQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAE--PYPLPAAGVL-HSGKTLWLL 225 (233)
T ss_pred hhccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCC--cccCCHhHcC-CCCcEEEEE
Confidence 887766676666677899999999999999999999999999999999999998 444 5789999999 689999999
Q ss_pred cHHHHhhc
Q 024468 253 DKPAASKL 260 (267)
Q Consensus 253 D~~Aa~~l 260 (267)
|++|+++|
T Consensus 226 D~~Aa~~l 233 (233)
T TIGR01198 226 DYAAARKL 233 (233)
T ss_pred ChHhhhcC
Confidence 99999865
No 3
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=7.5e-62 Score=429.73 Aligned_cols=232 Identities=26% Similarity=0.296 Sum_probs=209.0
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeeceec-cCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEA-SVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (267)
|++++|+|.+++++++|+.|.+.+++ ++++++.++|+||||+||.++|+.|. ..++.+++|+||+||++|||| ||.+
T Consensus 1 m~i~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~Vp~~ 80 (253)
T PTZ00285 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRD 80 (253)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCcEEecCCCC
Confidence 68999999999999999999999999 88999999999999999999997665 445668999999999999999 9999
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA 166 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA 166 (267)
|++||+++++++||+++ ++|++|+|++++.. |++++|++|++.|++. ++||+++||||+|||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~-~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~~--------------~~~Dl~lLG~G~DGH~A 145 (253)
T PTZ00285 81 HPQSYHYFMKENFFDHV-DIKEENRHILNGTAPDLEEECRRYEEKIRAV--------------GGIDLFLAGIGTDGHIA 145 (253)
T ss_pred chHHHHHHHHHHHhccC-CCCHhhEEcCCCCCcCHHHHHHHHHHHHHHh--------------CCCcEEEeCCCCCCcee
Confidence 99999999999999999 99999999998764 8999999999999863 57999999999999999
Q ss_pred ccCCCCCccccccceEEe------------ecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCc
Q 024468 167 SLFPNHSVLDVKNQWVSF------------ITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 234 (267)
Q Consensus 167 slfP~~~~~~~~~~~v~~------------~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~ 234 (267)
||||+++.. +.++++.. ..+.+++|++|||||++.|++||+|+|+++|++|+++++++++++. +.
T Consensus 146 slfP~~~~~-~~~~~v~~~~~t~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~--~~ 222 (253)
T PTZ00285 146 FNEPGSSLD-SRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGV--TH 222 (253)
T ss_pred ecCCCCccC-CceEEEECCHHHHHHHhhhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCC--CC
Confidence 999999863 33333331 1235788999999999999999999999999999999999999865 67
Q ss_pred cccccccccCCCeEEEEecHHHHhhcc
Q 024468 235 SLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 235 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
++|+++|+ .|++++||+|++|++.|.
T Consensus 223 ~~Pas~l~-~~~~~~~~~D~~Aa~~l~ 248 (253)
T PTZ00285 223 MCPASALQ-MHPAAVLCLDEDATLELK 248 (253)
T ss_pred ccchHHhc-cCCCEEEEEcHHHHhhhh
Confidence 99999999 689999999999999875
No 4
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-61 Score=411.24 Aligned_cols=241 Identities=55% Similarity=0.861 Sum_probs=225.0
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCCh
Q 024468 10 RGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHS 89 (267)
Q Consensus 10 ~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (267)
++++.+|++.+++.+++++++.+....+++++|.|+|+|||||.+..|++.+.......++|++|+||++|||+||.+|+
T Consensus 8 ~~~~~v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~ 87 (252)
T KOG3147|consen 8 MVKVIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDP 87 (252)
T ss_pred CceeeecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCCcHHHHHHHHhcccccCCCCccceEEEEEeccccCCCCC
Confidence 67899999999999999999999999999999999999999999999999887655678999999999999999999999
Q ss_pred hhHHHHHHHHhcccCCCCCCCCeEeCCCCC--CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceec
Q 024468 90 DSNYKLAKEGLLSKQVPIVPSHVHSINDSL--SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 167 (267)
Q Consensus 90 ~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~--d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 167 (267)
+|||+..+++||+++ +++..|+|++|.+. +++++++.|++.|.+.+..+ ..|.|||++||||+||||||
T Consensus 88 dSNyg~~~~~~l~~v-~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~--------s~p~FDL~LLG~GpDGHtaS 158 (252)
T KOG3147|consen 88 DSNYGLAKRHFLSKV-PIPHYNIYPIDESLIADAEEAADLYEKELKALVAND--------SFPVFDLLLLGMGPDGHTAS 158 (252)
T ss_pred cccHHHHHHhhhhhC-CCCcCcEEECChhhccCHHHHHHHHHHHHHHHhccC--------CCcceeEEEeccCCCCCeee
Confidence 999999999999999 99999999999875 79999999999999876532 25789999999999999999
Q ss_pred cCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccCCCe
Q 024468 168 LFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGK 247 (267)
Q Consensus 168 lfP~~~~~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~ 247 (267)
|||++..+.++.+||+.++++|++|++|||+|+++|+.|+++.|++.|+.|+++++.++... ...+|++++.+..++
T Consensus 159 LFP~~~~l~e~~~wV~~itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~---~~~lPaa~V~~~~~~ 235 (252)
T KOG3147|consen 159 LFPGHPLLNEKLKWVVPITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDK---EKKLPAALVNPAKGK 235 (252)
T ss_pred cCCCchhhhcccCEEEEeCCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhcc---cccCCchheeccCCe
Confidence 99998888898999999999999999999999999999999999999999999999999875 368999999976689
Q ss_pred EEEEecHHHHhhccc
Q 024468 248 LVWFLDKPAASKLQS 262 (267)
Q Consensus 248 ~~~~~D~~Aa~~l~~ 262 (267)
++||+|++|++++..
T Consensus 236 l~WflD~~A~~~l~~ 250 (252)
T KOG3147|consen 236 LVWFLDDDAASKLPV 250 (252)
T ss_pred EEEEEchHHhcCCCC
Confidence 999999999998864
No 5
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-61 Score=418.71 Aligned_cols=231 Identities=41% Similarity=0.596 Sum_probs=206.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHh-cccCCCCCCCCceeEEeeceeccCCCCh
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLC-EAPYNKTVDWAKWYIFWADERVVAKNHS 89 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll-~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (267)
|++++|+|++++++.+++.|.+.+++.++++|+++|+||||+||..+|+.| ...+ +++||++|++||+|||+||.+|+
T Consensus 1 m~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~-~~~~w~~v~~f~~DEr~vp~~~~ 79 (238)
T COG0363 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQ-GQLDWSKVTIFNLDERVVPPDDP 79 (238)
T ss_pred CceEEcCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCCCCHHHHHHHHHhhhc-cCCCchheEEEeccccccCCCCc
Confidence 689999999999999999999999999999999999999999999999755 4444 67999999999999999999999
Q ss_pred hhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHH-HHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceecc
Q 024468 90 DSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAAD-EYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 168 (267)
Q Consensus 90 ~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~-~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 168 (267)
+||+++|+++||+++ .++++++|.++.+ +++++|+ +|++.|.+ .++||++|||||+|||||||
T Consensus 80 ~Sn~~~~~~~l~~~~-~~~~~~i~~~~~~-~~~~e~~~~ye~~i~~--------------~~~~Dl~lLG~G~DGHias~ 143 (238)
T COG0363 80 ESNYGLMRRNLFDHI-DIPAEFIHNGDAS-DPDAECAARYEAKLPS--------------AGGFDLILLGMGEDGHIASL 143 (238)
T ss_pred hhHHHHHHHHHhccc-cCcHhhcCCCCcc-ChhHHHHHHHHhhccc--------------cCCCCEEEEcccCCCccccc
Confidence 999999999999999 9999887776655 4444677 99999975 35899999999999999999
Q ss_pred CCCCCcccc----ccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccC
Q 024468 169 FPNHSVLDV----KNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 244 (267)
Q Consensus 169 fP~~~~~~~----~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~ 244 (267)
||+++.+.. ....+....++|++|.+|||||++.|++||+|+|+++|++|+++++++++++. +..+|+|.|+ .
T Consensus 144 fP~~~~l~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~--~~~~Pas~l~-~ 220 (238)
T COG0363 144 FPGTPALDSATTEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPV--TELYPASILQ-L 220 (238)
T ss_pred CCCCcccccccchhhceeeecCCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCC--cccccHHHHh-c
Confidence 999996542 33445455677899999999999999999999999999999999999999987 5669999999 7
Q ss_pred CCeEEEEecHHHHhhcc
Q 024468 245 NGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 245 ~~~~~~~~D~~Aa~~l~ 261 (267)
|++++|++|++|++.|.
T Consensus 221 ~~~~~~~~d~~A~~~l~ 237 (238)
T COG0363 221 HPNVTWFLDEEAASLLK 237 (238)
T ss_pred CCCeEEEEchHHhhhcc
Confidence 88999999999999875
No 6
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=3.6e-59 Score=404.42 Aligned_cols=218 Identities=48% Similarity=0.762 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHH
Q 024468 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99 (267)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ 99 (267)
+++++++|++|++.+++++++++.++|+||||+||+.+|+.+.... +++|+||+||++||||||.+|++||++++|++
T Consensus 1 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~--~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ 78 (219)
T cd01400 1 EALAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAP--ALDWSKVHVFLGDERCVPPDDPDSNYRLAREA 78 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhcccc--CCCCceEEEEEeeccccCCCCcccHHHHHHHH
Confidence 3788999999999999999999999999999999999998876532 69999999999999999999999999999999
Q ss_pred hcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCcc-ccc
Q 024468 100 LLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVL-DVK 178 (267)
Q Consensus 100 ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~-~~~ 178 (267)
||+++ +++++|+|++++..+++++|++|+++|++.++ +.|+||+++||||+|||||||||+++.+ .+.
T Consensus 79 ll~~~-~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~~----------~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~ 147 (219)
T cd01400 79 LLSHV-AIPAANIHPIPTELGPEDAAAAYEKELRALFG----------GVPPFDLVLLGMGPDGHTASLFPGHPALLEET 147 (219)
T ss_pred hhccC-CCCHhhEEeCCCCCCHHHHHHHHHHHHHHHhc----------CCCCCCEEEECCcCCCceeecCCCCccccccc
Confidence 99999 99999999999888899999999999997541 2478999999999999999999999876 455
Q ss_pred cceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccCCCeEEEEe
Q 024468 179 NQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFL 252 (267)
Q Consensus 179 ~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~ 252 (267)
+.+++.+..++++|++|||||++.|++|++|+|+++|++|++++++++++++ +.++|++.++....+++|+.
T Consensus 148 ~~~v~~~~~~~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~--~~~~Pas~l~~~~~~~~w~~ 219 (219)
T cd01400 148 DRLVVAVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPD--PEELPAARVLPRPGEVLWFL 219 (219)
T ss_pred CceEEEEeCCCCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCC--CCCCChhhhcCCCCcEEEeC
Confidence 5678877666778999999999999999999999999999999999999876 67999999994336788873
No 7
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=2.9e-58 Score=408.19 Aligned_cols=232 Identities=22% Similarity=0.246 Sum_probs=205.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeeceec-cCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEA-SVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (267)
|++++|+|.+++++.+|+.|++.+++ ..++++.|+|+||||+||+.+|+.+. ..+.++++|+||+|||+|||+ ||.+
T Consensus 1 m~i~~~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~vp~~ 80 (259)
T TIGR00502 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYAGLSEE 80 (259)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecCCCCCC
Confidence 68999999999999999999999998 55568999999999999999997665 455678999999999999997 9999
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA 166 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA 166 (267)
|++||++++|++||+++ ++|++|+|++++.. +++++|++|++.|++ .++||+++||||+|||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~-~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~--------------~~~~Dl~llG~G~DGH~A 145 (259)
T TIGR00502 81 HPESYHSFMHNNFFQHI-DIKPENINILNGNAPDLEAECRRYEEKIRS--------------YGGIDLFMGGIGPDGHIA 145 (259)
T ss_pred chHHHHHHHHHHhcccC-CCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCcee
Confidence 99999999999999999 99999999999764 899999999999986 368999999999999999
Q ss_pred ccCCCCCccccccceEEee------------cCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCc
Q 024468 167 SLFPNHSVLDVKNQWVSFI------------TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 234 (267)
Q Consensus 167 slfP~~~~~~~~~~~v~~~------------~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~ 234 (267)
||||+++.... ..++... .+.+.+|++|||||++.|++|++|+++++|++|++++++++.++. +.
T Consensus 146 s~fP~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~--~~ 222 (259)
T TIGR00502 146 FNEPGSSLTSR-TRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGV--NH 222 (259)
T ss_pred cCCCCCCCCCc-eEEEEcchhhHHHHhhhhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCC--CC
Confidence 99999864332 2322210 133567889999999999999999999999999999999999876 67
Q ss_pred cccccccccCCCeEEEEecHHHHhhcc
Q 024468 235 SLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 235 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
.+|+++++ .|++++|++|++|++.|+
T Consensus 223 ~~Pas~l~-~~~~~~~~~d~~Aa~~l~ 248 (259)
T TIGR00502 223 MWTISALQ-LHKHAIVVCDENATQELK 248 (259)
T ss_pred ccchHHhc-cCCCEEEEEcHHHHhhhh
Confidence 99999999 578999999999999874
No 8
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.3e-58 Score=400.67 Aligned_cols=222 Identities=19% Similarity=0.238 Sum_probs=195.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeecee-ccCCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADER-VVAKNH 88 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr-~vp~~~ 88 (267)
|++++|+|.+++++.+|+.|.+ .|++++.++|+||||+||+.+|+.|. ..+..+++|+||+||++||| +||++|
T Consensus 1 m~i~i~~~~~~~~~~~a~~i~~----~i~~~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~v~vp~~~ 76 (232)
T PRK09762 1 QTLQQVENYTALSERASEYLLA----VIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTM 76 (232)
T ss_pred CeEEEECCHHHHHHHHHHHHHH----HHHHCCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEEecCCCCc
Confidence 6899999999999999999986 45568999999999999999998765 34456899999999999999 699999
Q ss_pred hhhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceecc
Q 024468 89 SDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 168 (267)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 168 (267)
++||+++++++||+++ ++|++|+|++++..+++++|++|++.|++ .++||+++||||+|||||||
T Consensus 77 ~~Sn~~~~~~~ll~~~-~i~~~~~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lLGmG~DGH~A~n 141 (232)
T PRK09762 77 PGTCETFLQQHIVQPL-GLREDQLISFRSEEINETECERVTNLIAR--------------KGGLDLCVLGLGKNGHLGLN 141 (232)
T ss_pred cHHHHHHHHHHhcCCC-CCCHHHEECCCCCcccHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCceecC
Confidence 9999999999999999 99999999998876568899999999986 36899999999999999988
Q ss_pred CCCCCcccc--------ccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccc
Q 024468 169 FPNHSVLDV--------KNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARM 240 (267)
Q Consensus 169 fP~~~~~~~--------~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~ 240 (267)
||+++.... ...++.....++++|++|||||++.|++||+|+|+++|++|++++++++++++ +.++|+++
T Consensus 142 ~P~~slfp~~~~~~l~~~~~~~~~~~~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~--~~~~Pas~ 219 (232)
T PRK09762 142 EPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKV--STAIPASF 219 (232)
T ss_pred CCCCCCCCCceeeeccHhhhhhhccCCCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCC--CCcccHHH
Confidence 888754332 22344334456788999999999999999999999999999999999999876 67899999
Q ss_pred cccCCCeEEEEecH
Q 024468 241 AQPTNGKLVWFLDK 254 (267)
Q Consensus 241 l~~~~~~~~~~~D~ 254 (267)
|+ .|+++++++|+
T Consensus 220 l~-~h~~~~~~~d~ 232 (232)
T PRK09762 220 LW-LHSNFICLIDR 232 (232)
T ss_pred Hh-hCCCEEEEecC
Confidence 99 78999999995
No 9
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=8.7e-56 Score=387.93 Aligned_cols=222 Identities=19% Similarity=0.237 Sum_probs=192.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCC---C
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK---N 87 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~---~ 87 (267)
|++++|+|++++++++|+.|.+. +.++++++|+||||+||..+|+.|.......++|+||+||++|| ||. +
T Consensus 1 m~i~i~~~~~e~~~~~a~~i~~~----i~~~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DE--v~~~~~~ 74 (239)
T PRK12358 1 MKIIITKDYEEMSRVAAHHLLGY----MSKTKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDE--IPFRGKE 74 (239)
T ss_pred CeEEEECCHHHHHHHHHHHHHHH----HHhCCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccc--cCCCCcc
Confidence 68999999999999999999864 55688999999999999999987664333456799999999999 555 4
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceec
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 167 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 167 (267)
+.+||++++|++||+++ ++|++|+|++++ ++|++|+++|++ .|+||+++||||+||||||
T Consensus 75 ~~~s~~~~~~~~l~~~~-~i~~~~~~~~~~-----~~~~~y~~~i~~--------------~~~~Dl~lLG~G~DGH~As 134 (239)
T PRK12358 75 GEGVTITNLRNLFFTPA-GIKEENIHKLTI-----DNYREHDQKLAR--------------DGGLDLVVLGLGADGHFCG 134 (239)
T ss_pred ccccHHHHHHHHhcCcC-CCCHHHeeCCCH-----HHHHHHHHHHHh--------------cCCCCEEEEccCCCCceee
Confidence 56689999999999999 999999999984 368999999986 3689999999999999999
Q ss_pred cCCCCCccccccceEEee-------------cCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCc
Q 024468 168 LFPNHSVLDVKNQWVSFI-------------TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 234 (267)
Q Consensus 168 lfP~~~~~~~~~~~v~~~-------------~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~ 234 (267)
||||++.+....+++... .+++++|++|||||++.|++||+|+|+++|++|++++++++.+++ +.
T Consensus 135 ~fPg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~--~~ 212 (239)
T PRK12358 135 NLPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPV--TE 212 (239)
T ss_pred cCCCCCcCCCceEEEECcHHHHHHhhhhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCC--CC
Confidence 999987655544433321 135788999999999999999999999999999999999999876 68
Q ss_pred cccccccccCCCeEEEEecHHHHhhcc
Q 024468 235 SLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 235 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
++|+|+++ .|++++|++|++|+++|.
T Consensus 213 ~~Pas~l~-~h~~~~~~~D~~aa~~l~ 238 (239)
T PRK12358 213 DVPASILQ-LHPNLTVILDEAAAAELA 238 (239)
T ss_pred CcCcHHhc-cCCCEEEEECHHHHhhcc
Confidence 99999999 689999999999998874
No 10
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=4.4e-55 Score=428.04 Aligned_cols=236 Identities=24% Similarity=0.260 Sum_probs=213.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeeceec-cC
Q 024468 8 RDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VA 85 (267)
Q Consensus 8 ~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp 85 (267)
..+|++++|+|.+++++.+|+.|++.|++++++++.++|+||||+||.++|+.|. .+++..++|++|+||++|||| ||
T Consensus 25 ~~~i~~~if~~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~~vp 104 (652)
T PRK02122 25 FEKIPTDIFESSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYYPMQ 104 (652)
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCeeccCCC
Confidence 4789999999999999999999999999999999999999999999999997654 556678999999999999999 99
Q ss_pred CCChhhHHHHHHHHhcccCCCCCCCCeEeCCCC---CCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCC
Q 024468 86 KNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDS---LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD 162 (267)
Q Consensus 86 ~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~---~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D 162 (267)
++|++||+++|+++||+++ ++|++|+|.+++. .+++++|++|++.|++. ++||+++||||+|
T Consensus 105 ~d~~~Sn~~~~re~L~~~i-~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~~--------------gg~DlvLLGiG~D 169 (652)
T PRK02122 105 PDSLQSYHRFMKENLFDHV-DIPPENIHIPDGTIPKEEIDEYCRDYEEKIEAA--------------GGIDFQLLGIGRT 169 (652)
T ss_pred CCcHHHHHHHHHHHhhccC-CCCHHHeecCCCccCcCCHHHHHHHHHHHHHhh--------------CCCcEEEeCCCCC
Confidence 9999999999999999999 9999999999875 37899999999999863 6899999999999
Q ss_pred CceeccCCCCCccccccceEE-----------eecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCC
Q 024468 163 GHVASLFPNHSVLDVKNQWVS-----------FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGP 231 (267)
Q Consensus 163 GHiAslfP~~~~~~~~~~~v~-----------~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~ 231 (267)
|||||||||++..+ .++.+. .+...+.+|++|||||++.|++||+|+|+++|++|++++++++++++
T Consensus 170 GHiAsnfPgs~~~s-~tr~v~l~~~tr~~aa~~f~~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~- 247 (652)
T PRK02122 170 GHIGFNEPGSGRNS-RTRLVTLDHITRRDAASDFFGEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEI- 247 (652)
T ss_pred CceeccCCCCcccc-cceEEEccchhhhhhccccCCCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCC-
Confidence 99999999997633 233321 12235788999999999999999999999999999999999999876
Q ss_pred CCccccccccccCCCeEEEEecHHHHhhccc
Q 024468 232 NCPSLPARMAQPTNGKLVWFLDKPAASKLQS 262 (267)
Q Consensus 232 ~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~~ 262 (267)
+.++|+|+|+ .|++++|++|++|++.|++
T Consensus 248 -~~~~PAs~Lq-~h~~~~~~lD~~AA~~Ltr 276 (652)
T PRK02122 248 -SDEVPASYLQ-EHPNATFVLDLAAASELTR 276 (652)
T ss_pred -CCccchHHhc-cCCCEEEEEcHHHhhhccc
Confidence 7899999999 6899999999999999986
No 11
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=7.5e-56 Score=378.41 Aligned_cols=197 Identities=45% Similarity=0.707 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHhc
Q 024468 22 LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLL 101 (267)
Q Consensus 22 l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll 101 (267)
|++++|++|++.|++.++++++++|+||||+||..+|+.+....+.+++|+||+||++|||+||++|++||+++++++||
T Consensus 1 la~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~ 80 (199)
T PF01182_consen 1 LAQAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLL 80 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhh
Confidence 67899999999999999999999999999999999998665422247999999999999999999999999999999999
Q ss_pred ccCCCCCCCCeEeCCC-CCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCccc-ccc
Q 024468 102 SKQVPIVPSHVHSIND-SLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD-VKN 179 (267)
Q Consensus 102 ~~~~~i~~~~~~~~~~-~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~-~~~ 179 (267)
+++ ++|++|+|++++ ..+++++|++|++.|.+.++.. ..|.||+++||||+|||||||||+++.+. +++
T Consensus 81 ~~~-~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~--------~~p~~Dl~lLG~G~DGH~aslfPg~~~~~~~~~ 151 (199)
T PF01182_consen 81 DPL-PIPPENIHPIDGEADDPEEAAERYEQELASLGGEA--------GFPGFDLVLLGMGEDGHTASLFPGSPALLEESE 151 (199)
T ss_dssp GGS-GGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSE--------ECESBSEEEEE--TTS-BTTB-TTCHTTHHHHS
T ss_pred ccC-CCCcceEEeCCCCCCCHHHHHHHHHHHHHHhcccc--------CCCceeEEEeccccCCCeeccCCCCcccccccc
Confidence 999 999999999997 4699999999999999875432 13569999999999999999999998854 334
Q ss_pred ceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHh
Q 024468 180 QWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID 227 (267)
Q Consensus 180 ~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~ 227 (267)
+++..+.++|++|++|||||++.|++||+|+|+++|++|+++++++|+
T Consensus 152 ~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 152 RWVVAVTDSPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp SSSEEEECCTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred ceEEEecCCCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 567777778999999999999999999999999999999999999975
No 12
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=3.4e-47 Score=337.42 Aligned_cols=231 Identities=26% Similarity=0.316 Sum_probs=202.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCc-EEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeeceec-cCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGV-FAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~-~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (267)
|++++|+|.+++++++|++|.+.+++++++++. .+||||||+||..+|+.+. .+++..++|++|+||++|||+ ||.+
T Consensus 1 m~~~~~~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~ 80 (261)
T PRK00443 1 MRLIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPAD 80 (261)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCC
Confidence 689999999999999999999999999998875 5688999999999997665 344567999999999999997 9999
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA 166 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA 166 (267)
|++||++++++.|++++ +++..++|++++. .++..++..|++.|+. .+++|+++||||+|||+|
T Consensus 81 ~~~s~~~~~~~~l~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~a 145 (261)
T PRK00443 81 HPESYRYFMRENFFDHV-DIPPENINLLNGNAPDPEAECRRYEEKIKS--------------AGGIDLQILGIGENGHIA 145 (261)
T ss_pred ChHHHHHHHHHHHhccC-CCCHHHeecCCCCCcCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCccc
Confidence 99999999999999999 9999999999775 4888999999999986 357999999999999999
Q ss_pred ccCCCCCccccccceEEe------------e-cCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCC
Q 024468 167 SLFPNHSVLDVKNQWVSF------------I-TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNC 233 (267)
Q Consensus 167 slfP~~~~~~~~~~~v~~------------~-~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~ 233 (267)
||||++....+. .+.. + .+.+..|.+|||||++.|++|++++++++|++|+++++.+|.++. +
T Consensus 146 slfp~~~~~~~~--~~~~l~~~~~~~~~~~~d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~--~ 221 (261)
T PRK00443 146 FNEPGSSFASRT--RIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPV--N 221 (261)
T ss_pred ccCCCCCCCCCe--EEEEccHhhHHHHHhhcCCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCC--C
Confidence 999997643221 1111 1 112567889999999999999999999999999999999999876 6
Q ss_pred ccccccccccCCCeEEEEecHHHHhhcc
Q 024468 234 PSLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 234 ~~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
.++|+++|+ .|++++|++|++|++.|+
T Consensus 222 ~~~Pa~~l~-~~~~~~~~~d~~aa~~l~ 248 (261)
T PRK00443 222 HMWPASILQ-LHPKATLVLDEAAASELK 248 (261)
T ss_pred CCcchHHHh-hCCCEEEEEcHHHHhHHH
Confidence 799999999 689999999999999885
No 13
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=7.6e-45 Score=316.62 Aligned_cols=217 Identities=27% Similarity=0.345 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCceeEEeeceec-cCCCChhhHHHHHHH
Q 024468 21 ELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKE 98 (267)
Q Consensus 21 ~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~~~~Sn~~~l~~ 98 (267)
++++++|+++. +.+++++.++|+||||+||..+|+.+. ..++.+++|++|+||++|||+ ||.+|++||++++++
T Consensus 2 ~~~~~~a~~l~----~~i~~~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~ 77 (232)
T cd01399 2 EMSEAAAELIA----ELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRE 77 (232)
T ss_pred hHHHHHHHHHH----HHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHH
Confidence 45566666665 567778999999999999999997664 334567999999999999999 999999999999999
Q ss_pred HhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCcccc
Q 024468 99 GLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDV 177 (267)
Q Consensus 99 ~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~~ 177 (267)
.|++++ +++..|+|+++++. ++.+++..|++.|++ .++||+++||||+|||+|||||++....+
T Consensus 78 ~l~~~~-~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~as~~p~~~~~~~ 142 (232)
T cd01399 78 NLFDHI-DIKPENIHIPDGNAADLEAECRRYEALIAE--------------AGGIDLQLLGIGENGHIGFNEPGSSLDSR 142 (232)
T ss_pred HhhccC-CCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEECCCCCceeeecCCCCCCCCc
Confidence 999999 99999999998753 788899999999986 35799999999999999999999866533
Q ss_pred ccceEE-----------eecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccCCC
Q 024468 178 KNQWVS-----------FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNG 246 (267)
Q Consensus 178 ~~~~v~-----------~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~ 246 (267)
. .... .+...+..|.+|||||++.|+++++++++++|++|+++++.+|.++. +.++|++.++ .|+
T Consensus 143 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~--~~~~P~~~l~-~~~ 218 (232)
T cd01399 143 T-RVVTLDESTRQANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPV--TEECPASILQ-LHP 218 (232)
T ss_pred e-EEEECCHHhHHHHhhhcCCcCCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCC--CCCcchHHHh-hCC
Confidence 2 1111 11112567889999999999999999999999999999999999876 6799999999 588
Q ss_pred eEEEEecHHHHhhc
Q 024468 247 KLVWFLDKPAASKL 260 (267)
Q Consensus 247 ~~~~~~D~~Aa~~l 260 (267)
+++||+|++|++.|
T Consensus 219 ~~~~~~d~~aa~~~ 232 (232)
T cd01399 219 NVTVILDEAAASEL 232 (232)
T ss_pred CeEEEEcHHHhccC
Confidence 99999999999764
No 14
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-45 Score=297.76 Aligned_cols=231 Identities=23% Similarity=0.301 Sum_probs=208.7
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCChHHHHH-HHhcccCCCCCCCCceeEEeeceec-cCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKER-GVFAIALSGGSLIGLMG-KLCEAPYNKTVDWAKWYIFWADERV-VAKN 87 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~-~~~~l~lsGGstp~~l~-~ll~~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (267)
|++++.++++.+++.+|+++...|++..... ..++++||+||||..+| +|+..++++.++|+.|..|++|||+ +|.+
T Consensus 1 mkliile~~d~~~ewaakyv~~ri~~f~p~~dkyf~lglptgstplg~ykklie~~k~g~~sf~yvktfnmdeyvglprd 80 (273)
T KOG3148|consen 1 MKLIILENYDKVSEWAAKYVVNRINQFTPGGDKYFVLGLPTGSTPLGMYKKLIEFYKNGVLSFKYVKTFNMDEYVGLPRD 80 (273)
T ss_pred CcEEEeechhHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCCCchhHHHHHHHHHhcCceEEEEEeeecchhhcCCCCC
Confidence 6899999999999999999999887766544 56899999999999999 6888888899999999999999999 8999
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA 166 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA 166 (267)
|++|+..+|..+||+++ +|.|+|+|.++|.+ |.+++|.+|+++|++. |++|+-+.|||+|||||
T Consensus 81 h~esyhsfmwnnffkhi-di~p~n~hildgna~dl~aec~~fe~kikea--------------ggidlfvggigpdghia 145 (273)
T KOG3148|consen 81 HPESYHSFMWNNFFKHI-DINPANIHILDGNAADLQAECDAFERKIKEA--------------GGIDLFVGGIGPDGHIA 145 (273)
T ss_pred ChhHHHHHHHHhhhhhc-ccCcccceeecCchHHHHHHHHHHHHHHHhc--------------CCeEEEeeccCCCCcee
Confidence 99999999999999999 99999999999986 8999999999999973 78999999999999999
Q ss_pred ccCCCCCcccccc-------------ceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCC
Q 024468 167 SLFPNHSVLDVKN-------------QWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNC 233 (267)
Q Consensus 167 slfP~~~~~~~~~-------------~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~ 233 (267)
||+||+++.+.+. +++. .+-.++|.+++|+|.++.|.||.|.++++|+.|+-++-++++.+. .
T Consensus 146 fnepgsslvsrtrvktla~dti~anarffd--gd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegv--n 221 (273)
T KOG3148|consen 146 FNEPGSSLVSRTRVKTLAMDTILANARFFD--GDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV--N 221 (273)
T ss_pred eCCCcchhhhhhhHHHHhHHHHHhhceecC--CccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcc--c
Confidence 9999998765421 1121 245689999999999999999999999999999999999999887 7
Q ss_pred ccccccccccCCCeEEEEecHHHHhhcc
Q 024468 234 PSLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 234 ~~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
..+-+|.+| +|++.++++|++|.-+|+
T Consensus 222 hmwtvsafq-qh~~t~ficdedatlelk 248 (273)
T KOG3148|consen 222 HMWTVSAFQ-QHPRTTFICDEDATLELK 248 (273)
T ss_pred ceeehhhHh-hCCceEEEecCCceeEEE
Confidence 889999999 899999999999987764
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=3.2e-40 Score=275.16 Aligned_cols=168 Identities=24% Similarity=0.273 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHhccc
Q 024468 24 TNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSK 103 (267)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~ 103 (267)
+.+|++|++.+++.+++++.++|+||||+||..+|+.+....... +|++|+||++||||||.+|++||+++++++|+++
T Consensus 2 ~~~a~~i~~~i~~~~~~~~~~~i~lsgGsTp~~~y~~L~~~~~~~-~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~ 80 (169)
T cd00458 2 KEALKFIEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRG-EISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEH 80 (169)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhhhhC-CccceEEEECccccCCCCCchHHHHHHHHHhhcc
Confidence 578889999999999999999999999999999998765422223 8999999999999999999999999999999999
Q ss_pred CCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCccccccceEE
Q 024468 104 QVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVS 183 (267)
Q Consensus 104 ~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~~~~~~v~ 183 (267)
+ ++|++|+|+++++.++++++.+|.+.+.+. .|+||+++||||
T Consensus 81 ~-~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~-------------~~~~Dl~lLG~G----------------------- 123 (169)
T cd00458 81 D-IIPASNVHYVDTSLPIEKACEKYEREILDQ-------------VDAIDLAVDGAG----------------------- 123 (169)
T ss_pred C-CCCHHHeecCCCCCCcHHHHHHHHHHHHhh-------------CCCCCEEEECcC-----------------------
Confidence 9 999999999998877777777787766542 468999999999
Q ss_pred eecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccCCCeEEEEe
Q 024468 184 FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFL 252 (267)
Q Consensus 184 ~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~ 252 (267)
++|++++|+++|++|++++++++++++ +.++|++.++ .|++++||+
T Consensus 124 --------------------~~a~~i~~~~~G~~Ka~~l~~~~~~~~--~~~~Pas~l~-~~~~~~~~~ 169 (169)
T cd00458 124 --------------------YRAGTVIVLVDGRKKVDYLCQNTEPGV--IENGIFADIR-GKEKDIVIV 169 (169)
T ss_pred --------------------ccccEEEEEecChhHHHHHHHHhcCCC--CCcCCHHHhc-cCCCeEEeC
Confidence 889999999999999999999998766 6799999999 589999985
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=98.11 E-value=0.00021 Score=65.39 Aligned_cols=203 Identities=19% Similarity=0.146 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHH
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAK 97 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~ 97 (267)
+.+...+.++..-+..+.+.|+... +|++++|+|...+-+.+.. .+-+++.|..+===. ...+..-+...+-
T Consensus 92 ~~~~~~~~lg~aaA~~l~~~l~~gd--vigV~wGrTv~a~~~~l~~-----~~~~~~~vV~l~GG~-~~~~~~~~~~~~~ 163 (321)
T COG2390 92 ADDSILRRLGRAAAQYLESLLKPGD--VIGVGWGRTLSAVVDNLPP-----APLRDVKVVQLTGGV-GHADGSYNANTIA 163 (321)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCC--EEEEeccHHHHHHHHhcCc-----CccCCeEEEECCCCC-CCCccccCHHHHH
Confidence 4344444455555555555665544 9999999997777665543 234556665532111 1112222333333
Q ss_pred HHhcccCCCCCCCCeEeCCCCCCHHHHHHHH-HHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCccc
Q 024468 98 EGLLSKQVPIVPSHVHSINDSLSAEEAADEY-EFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD 176 (267)
Q Consensus 98 ~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y-~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~ 176 (267)
..+-+++ +.....++.|.--.+++....-. +..+++.+.. ....|++++|+|. ..|.++...
T Consensus 164 ~~~A~k~-~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~----------~~~ad~alvGIG~------~~~~~~~~~ 226 (321)
T COG2390 164 LRLAEKL-GAESYLLPAPLVASSPELREALLQEPSVREVLDL----------ARSADLALVGIGS------LSANSTLVR 226 (321)
T ss_pred HHHHHHh-CCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHH----------HHhCCEEEEecCC------Ccccchhhh
Confidence 3344444 33222333332222443322222 3344444332 1368999999995 333332110
Q ss_pred -------c------c-------cceEEeecCCC--CCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCc
Q 024468 177 -------V------K-------NQWVSFITDSP--KPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 234 (267)
Q Consensus 177 -------~------~-------~~~v~~~~~~~--~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~ 234 (267)
+ . .+++..-...- ....+-|++++..|.+..+++.++.|+.|.+++..+|.++.
T Consensus 227 ~g~~~~~~~~~l~~~gaVGdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~---- 302 (321)
T COG2390 227 SGFIYEEELEALLAKGAVGDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGY---- 302 (321)
T ss_pred hcCCCHHHHHHHHhCCcceecccceecCCCCCccccccCceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCCC----
Confidence 0 0 01121111111 12356899999999999999999999999999999999853
Q ss_pred cccccccccCCCeEEEEecHHHHhhcc
Q 024468 235 SLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 235 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
.+ +.++|+.+|..|-
T Consensus 303 -----------~n-~LITDe~tA~~lL 317 (321)
T COG2390 303 -----------IN-VLITDEATAEALL 317 (321)
T ss_pred -----------CC-EEEeCHHHHHHHH
Confidence 13 4578999888653
No 17
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=97.76 E-value=0.00018 Score=63.87 Aligned_cols=202 Identities=18% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCC---CChhhHHHHH
Q 024468 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK---NHSDSNYKLA 96 (267)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~---~~~~Sn~~~l 96 (267)
++..+.+++..++.+.+.+... -+|+++.|+|...+-+.+.. ....+++|+.+===. +. .|+....+.+
T Consensus 32 ~~~~~~l~~~aA~~L~~~l~~~--~~iGv~wG~Tl~~~~~~l~~-----~~~~~~~vV~l~Gg~-~~~~~~~~~~i~~~l 103 (255)
T PF04198_consen 32 EDILESLGEAAAEYLSELLKDG--DVIGVGWGRTLYAVANHLPP-----KSLPNVTVVPLIGGV-GNSNSYQANEIARRL 103 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH--TT--EEEEE-TSHHHHHHHHTS-------SSSSCEEEEESBSBT-TTSSGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CEEEEcchHHHHHHHHhcCc-----cCCCCcEEEECCCCC-CCCCCcCHHHHHHHH
Confidence 3445555555555555555433 39999999985555443322 456778877643222 11 2333333444
Q ss_pred HHHhcccCCCCCCCCeEeCCCCCCHHHHH-HHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCceeccCCCCCcc
Q 024468 97 KEGLLSKQVPIVPSHVHSINDSLSAEEAA-DEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVL 175 (267)
Q Consensus 97 ~~~ll~~~~~i~~~~~~~~~~~~d~~~~a-~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~ 175 (267)
-+ ++ +-....++.|.--.+++... -.-+..+++.+.. ....|++++|+|.=..-+.++...-..
T Consensus 104 A~----~~-g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~----------~~~~dial~giG~~~~~~~~~~~~~~~ 168 (255)
T PF04198_consen 104 AE----KL-GGKYYFLPAPAFVDSPELRDALLAEPSIREVLDL----------ARKADIALVGIGSPSSDSTLYRSGYLS 168 (255)
T ss_dssp HH----HH-TSEEE---SBSB-SSHHHHHHHHTSHHHHHHHHH----------HCT-SEEEEEEEEHHHHHHHCHHTTSC
T ss_pred HH----Hh-CCcEEEEeCCccCCCHHHHHHHHhChHHHHHHHH----------HHhCCEEEEecCCCCCcchHHHhCCCC
Confidence 44 33 32222233222222443311 1112344444332 247899999999766644444221110
Q ss_pred -------ccc-------cceEEeecC--CCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCcccccc
Q 024468 176 -------DVK-------NQWVSFITD--SPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPAR 239 (267)
Q Consensus 176 -------~~~-------~~~v~~~~~--~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas 239 (267)
.+. .+++..-.+ ......+.|++++..|.+.++++.++.|.+|.+++..+|.++.
T Consensus 169 ~~~~~~l~~~gAVGdi~~~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~g~--------- 239 (255)
T PF04198_consen 169 EEEIEELREKGAVGDICGRFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRGGY--------- 239 (255)
T ss_dssp HHHHHHHHHTTEEEEETTEEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHTTS---------
T ss_pred HHHHHHHHHCCcEEEhhchhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhcCC---------
Confidence 000 011110000 0112356899999999999999999999999999999999864
Q ss_pred ccccCCCeEEEEecHHHHhhc
Q 024468 240 MAQPTNGKLVWFLDKPAASKL 260 (267)
Q Consensus 240 ~l~~~~~~~~~~~D~~Aa~~l 260 (267)
-+ +.++|++.|..|
T Consensus 240 ------i~-~LItDe~tA~~l 253 (255)
T PF04198_consen 240 ------IN-VLITDESTARAL 253 (255)
T ss_dssp ------TS-EEEEEHHHHHHH
T ss_pred ------CC-EEEECHHHHHHH
Confidence 13 457899988765
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=97.19 E-value=0.028 Score=51.46 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccccCCCeEEEEecHHHHhhcc
Q 024468 193 PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ 261 (267)
Q Consensus 193 ~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 261 (267)
...|++++..|.+.++++.++.|.+|.+++..+|.++. -+ +.++|+.+|..|-
T Consensus 262 ~r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg~---------------i~-~LITDe~tA~~lL 314 (318)
T PRK15418 262 NELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGGY---------------IN-ALVTDEKTARAIL 314 (318)
T ss_pred cceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcCC---------------CC-EEEECHHHHHHHH
Confidence 34789999999999999999999999999999999864 12 3578999988764
No 19
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=83.10 E-value=23 Score=31.51 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=32.9
Q ss_pred HHHHHHHHHhc----CcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCC
Q 024468 31 ADLSEASVKER----GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKN 87 (267)
Q Consensus 31 ~~~i~~~i~~~----~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~ 87 (267)
...+.+.+.+. .++.||||||..=..+..++..... . -++..+.+|+.+-+..
T Consensus 7 ~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~-~---~~~~a~~Vd~~~~~~~ 63 (298)
T COG0037 7 ERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGR-R---IEVEAVHVDHGLRGYS 63 (298)
T ss_pred HHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhcc-C---ceEEEEEecCCCCCcc
Confidence 33344455444 6889999999665455444443211 1 4677899999996533
No 20
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=77.53 E-value=15 Score=33.11 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHh---cccC
Q 024468 28 DYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGL---LSKQ 104 (267)
Q Consensus 28 ~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~l---l~~~ 104 (267)
+...+.|++.+. .+++.+|||||-......-|+... --++++..++|-..+..+..+.-..+++++| +-.+
T Consensus 9 e~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~A-----iGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~V 82 (315)
T COG0519 9 EEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRA-----IGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVV 82 (315)
T ss_pred HHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHH-----hhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEE
Confidence 344444555664 688999999995544444343321 1267888999999998888887777777765 1112
Q ss_pred CCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhh
Q 024468 105 VPIVPSHVHSINDSLSAEEAADEYEFDIRQLV 136 (267)
Q Consensus 105 ~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~ 136 (267)
+.....+-.+.|-.||++--+...+..-+.+
T Consensus 83 -dA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VF 113 (315)
T COG0519 83 -DAKDRFLSALKGVTDPEEKRKIIGREFIEVF 113 (315)
T ss_pred -chHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 2111112224455688876555555444443
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=75.13 E-value=14 Score=30.59 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=43.7
Q ss_pred EEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHhcccCCCCCCCCeEeCC----CCC
Q 024468 44 FAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSIN----DSL 119 (267)
Q Consensus 44 ~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~----~~~ 119 (267)
..||+|||..=..|..++.... ....| ++..+.+|..+=+ ........+++ +.+.+ ++|- .+..++ ...
T Consensus 2 i~va~SGG~DS~~Ll~~l~~~~-~~~~~-~~~~~~vdh~~~~--~s~~~~~~v~~-~~~~~-~i~~-~~~~~~~~~~~~~ 74 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHLLKELR-RRNGI-KLIAVHVDHGLRE--ESDEEAEFVEE-ICEQL-GIPL-YIVRIDEDRKKGS 74 (182)
T ss_dssp EEEE--SSHHHHHHHHHHHHHH-TTTTT-EEEEEEEE-STSC--CHHHHHHHHHH-HHHHT-T-EE-EEEE--CHCCTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHH-HhcCC-CeEEEEEecCCCc--ccchhHHHHHH-HHHhc-CCce-EEEEeeeeecccC
Confidence 6799999966445544443211 12344 8899999987732 23333455554 33445 5433 233333 122
Q ss_pred CHHHHHH--HHHHHHHHhhhhccccccCCCCCCcceEEEec
Q 024468 120 SAEEAAD--EYEFDIRQLVKTRMVCVSDISDCPKFDLILLG 158 (267)
Q Consensus 120 d~~~~a~--~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG 158 (267)
..++.|. +|+ .+.+... .-+++.+++|
T Consensus 75 ~~e~~aR~~Ry~-~l~~~a~-----------~~g~~~i~~G 103 (182)
T PF01171_consen 75 NIEECARELRYQ-FLREIAK-----------EEGCNKIALG 103 (182)
T ss_dssp TCHHHHHHHHHH-HHHHHHH-----------TTT-CEEE--
T ss_pred CHHHHHHHHHHH-HHHHhhh-----------cccccceeec
Confidence 4444454 443 3333322 1267888886
No 22
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=68.71 E-value=19 Score=30.13 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
.+-+...+.|+|||| -|...+++.+...+ -.+..+.+-+++.+.+|
T Consensus 92 ~m~~~sda~I~lPGG~GTL~El~e~~~~~q-lg~~~kPiil~n~~g~~ 138 (178)
T TIGR00730 92 MMAELADAFIAMPGGFGTLEELFEVLTWAQ-LGIHQKPIILFNVNGHF 138 (178)
T ss_pred HHHHhCCEEEEcCCCcchHHHHHHHHHHHH-cCCCCCCEEEECCcchH
Confidence 344668999999999 44566665443211 12455778888888888
No 23
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=67.50 E-value=6.2 Score=31.21 Aligned_cols=45 Identities=16% Similarity=-0.043 Sum_probs=26.5
Q ss_pred HhcCcEEEEEcCCC-hHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 39 KERGVFAIALSGGS-LIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 39 ~~~~~~~l~lsGGs-tp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
-+...+.|+++||. |...+++.+...+-+...-..+.+++.|++|
T Consensus 51 ~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w 96 (133)
T PF03641_consen 51 IESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFW 96 (133)
T ss_dssp HHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCC
T ss_pred HHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchH
Confidence 35578999999993 4566665544211122222257778888888
No 24
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=63.14 E-value=88 Score=26.03 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=75.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhccc---CCCCCCCCceeEEeeceeccCCC-
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAP---YNKTVDWAKWYIFWADERVVAKN- 87 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~---~~~~i~w~~v~~f~~DEr~vp~~- 87 (267)
-..+|++.+++.+.++.+|.+ .++.+.++.++.+...+...+.+.|... ....++=.++.+....|++.+..
T Consensus 22 ~c~~Y~~~~e~~~~~~~Fi~~----GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d~~~~~~~gqL~~~~~~~~Y~~~g~ 97 (191)
T PF14417_consen 22 ICAFYDDEEELLEVLVPFIRE----GLARGERCLYVAPDPRRVEELRDELRKAGPDVEQYLDSGQLELLDAEEWYLPDGR 97 (191)
T ss_pred EEEEECCHHHHHHHHHHHHHH----HHHCCCeEEEEECCCCCHHHHHHHHHhcCCchhhcccCCCEEEecchhhhccCCC
Confidence 456899999999999999874 7767666666665455555555555321 01224446788888888886553
Q ss_pred -ChhhHHHHHHHHhcccCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhh
Q 024468 88 -HSDSNYKLAKEGLLSKQVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVK 137 (267)
Q Consensus 88 -~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~-----~d~~~~a~~y~~~i~~~~~ 137 (267)
|++....++++.+.+.+ .-....+.. .++ .+.-++..+||..+..++.
T Consensus 98 f~~~~~i~~~~~~~~~a~-~~G~~~lRv-~ge~~w~~~~~~~~l~~yE~~ln~~~~ 151 (191)
T PF14417_consen 98 FDPARMIAFWRAALEQAL-AEGYRGLRV-IGEMTWALRSGWEELLRYEALLNRLFA 151 (191)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCcEEE-EEechhhccccHHHHHHHHHHHHHHhc
Confidence 66677777777665544 212222211 111 1244678899999998764
No 25
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=53.06 E-value=52 Score=29.01 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHhcCcEEEEEcCCChH--HHHHHHhcccCCCCCCCCceeEEeeceecc-C-----CCC-----------hhhHHHHHH
Q 024468 37 SVKERGVFAIALSGGSLI--GLMGKLCEAPYNKTVDWAKWYIFWADERVV-A-----KNH-----------SDSNYKLAK 97 (267)
Q Consensus 37 ~i~~~~~~~l~lsGGstp--~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v-p-----~~~-----------~~Sn~~~l~ 97 (267)
.+++++..++||+..... ...++.|.. ..|++++.- |.-|.++. + ..+ .+-+-+-+-
T Consensus 92 ~lq~~~~~v~alT~~~~~~~~~t~~~Lk~---~gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L 167 (252)
T PF11019_consen 92 SLQNKGIPVIALTARGPNMEDWTLRELKS---LGIDFSSSS-FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVL 167 (252)
T ss_pred HHHHCCCcEEEEcCCChhhHHHHHHHHHH---CCCCccccc-cccCcceecccccCCCCCCceeecCeEEeCCCccHHHH
Confidence 477889999999877632 111233333 478887765 34444331 1 111 122335677
Q ss_pred HHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHH
Q 024468 98 EGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIR 133 (267)
Q Consensus 98 ~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~ 133 (267)
..||+.+ +-.+++|++++.. .+.....++..+
T Consensus 168 ~~fL~~~-~~~pk~IIfIDD~---~~nl~sv~~a~k 199 (252)
T PF11019_consen 168 KYFLDKI-NQSPKKIIFIDDN---KENLKSVEKACK 199 (252)
T ss_pred HHHHHHc-CCCCCeEEEEeCC---HHHHHHHHHHHh
Confidence 7899999 8888899999855 344556666555
No 26
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=53.05 E-value=38 Score=30.92 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCC
Q 024468 29 YIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (267)
Q Consensus 29 ~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (267)
...+.|++.+.. +++.+|+|||-.=..+..++... +. .+++.+.+|.-+.+.
T Consensus 5 ~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~----~G-~~v~av~vd~G~~~~ 56 (311)
T TIGR00884 5 EAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRA----IG-DRLTCVFVDHGLLRK 56 (311)
T ss_pred HHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHH----hC-CCEEEEEEeCCCCCh
Confidence 344555666654 88999999994433344444321 22 378889999877653
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=52.49 E-value=40 Score=33.45 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=51.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWA 72 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~ 72 (267)
+-+++.++. ||+.++.++|.. ....-+--+.++.||- ||..|.+++...+..-=.|+
T Consensus 265 ~~LV~tPTR-ELa~QV~~Hl~a----i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 265 IALVVTPTR-ELAHQVKQHLKA----IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred eeEEecChH-HHHHHHHHHHHH----hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 456777775 677777777642 2223333355566763 45566666654322223799
Q ss_pred ceeEEeece--eccCCCChhhHHHHHHH
Q 024468 73 KWYIFWADE--RVVAKNHSDSNYKLAKE 98 (267)
Q Consensus 73 ~v~~f~~DE--r~vp~~~~~Sn~~~l~~ 98 (267)
+|.+..+|| |.|...|=+-....++.
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~ 367 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKH 367 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHH
Confidence 999999999 56888887766665544
No 28
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=47.23 E-value=78 Score=27.09 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=26.4
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcee-EEeeceec
Q 024468 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWY-IFWADERV 83 (267)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~-~f~~DEr~ 83 (267)
.+.+...+.|+++|| -|-..++..+...+.+...-.++- +++.+.+|
T Consensus 106 ~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~ 154 (205)
T COG1611 106 AMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFW 154 (205)
T ss_pred HHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHH
Confidence 445678999999999 444566654443221233334444 44455544
No 29
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=46.74 E-value=74 Score=27.72 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeecee
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (267)
+.+++.+.+...|.+.+++. ....+.|+||||-.=..+..++... ..=.+++.+.++..
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~----~~~~~v~~~~~~~~ 60 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRA----LGRENVLALFMPSR 60 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHH----hCcccEEEEECCCC
Confidence 34555566666655544432 3457999999994333334444321 11135777777754
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=44.91 E-value=93 Score=29.69 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=37.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCc
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAK 73 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~ 73 (267)
-+++.++. +|+.++.+.+.. .....+--.+.+.||. ||..++.++.. ..+++++
T Consensus 78 aLil~Ptr-eLa~Qi~~~~~~----~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~---~~~~l~~ 149 (456)
T PRK10590 78 ALILTPTR-ELAAQIGENVRD----YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ---NAVKLDQ 149 (456)
T ss_pred EEEEeCcH-HHHHHHHHHHHH----HhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc---CCccccc
Confidence 46677775 455555555543 2222333345556664 34445544433 4578899
Q ss_pred eeEEeeceec
Q 024468 74 WYIFWADERV 83 (267)
Q Consensus 74 v~~f~~DEr~ 83 (267)
+.++-+||--
T Consensus 150 v~~lViDEah 159 (456)
T PRK10590 150 VEILVLDEAD 159 (456)
T ss_pred ceEEEeecHH
Confidence 9999999964
No 31
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=44.87 E-value=51 Score=28.70 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHHHHh-cCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 32 DLSEASVKE-RGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 32 ~~i~~~i~~-~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
+.|+.++++ .+++.+++|||..=..+..++... ..++.++++|+-+
T Consensus 30 e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~------~~~i~vvfiDTG~ 76 (241)
T PRK02090 30 ERLAWALENFGGRLALVSSFGAEDAVLLHLVAQV------DPDIPVIFLDTGY 76 (241)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEecCCC
Confidence 445567775 345899999997766777777652 2468899999876
No 32
>PLN02347 GMP synthetase
Probab=42.29 E-value=73 Score=31.48 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCCh
Q 024468 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHS 89 (267)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (267)
+.+++.+..++++.+|||||-.=..+..++.. .+. .++.-+.+|.-..+....
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~----alG-~~v~av~id~g~~~~~E~ 272 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHK----AIG-DRLHCVFVDNGLLRYKEQ 272 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHH----HhC-CcEEEEEEeCCCCChhHH
Confidence 34445555678899999999443344444433 123 578889999877665543
No 33
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=42.13 E-value=1.1e+02 Score=27.43 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCC
Q 024468 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (267)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (267)
+.+++++++.+++.||+|||..-..+..++... +- +++.-+-+|==++|.
T Consensus 8 ~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~----lG-~~v~AvTv~sP~~p~ 57 (269)
T COG1606 8 ERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEA----LG-DNVVAVTVDSPYIPR 57 (269)
T ss_pred HHHHHHHhhcCeEEEEecCCccHHHHHHHHHHH----hc-cceEEEEEecCCCCh
Confidence 446678888899999999995544554444321 11 455555555434444
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.48 E-value=88 Score=29.99 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=36.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCC-------------------ChHHHHHHHhcccCCCCCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGG-------------------SLIGLMGKLCEAPYNKTVDW 71 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGG-------------------stp~~l~~ll~~~~~~~i~w 71 (267)
--++++++. +|++...+.+.. .....+.-+..+.|| +||..++.+... ..+.+
T Consensus 164 ~aLil~Ptr-eLa~Q~~~~~~~----l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~---~~~~l 235 (475)
T PRK01297 164 RALIIAPTR-ELVVQIAKDAAA----LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR---GEVHL 235 (475)
T ss_pred eEEEEeCcH-HHHHHHHHHHHH----hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc---CCccc
Confidence 346788886 555555554432 222223334455555 234444444332 45677
Q ss_pred CceeEEeeceec
Q 024468 72 AKWYIFWADERV 83 (267)
Q Consensus 72 ~~v~~f~~DEr~ 83 (267)
+++.++-+||--
T Consensus 236 ~~l~~lViDEah 247 (475)
T PRK01297 236 DMVEVMVLDEAD 247 (475)
T ss_pred ccCceEEechHH
Confidence 899999999974
No 35
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.62 E-value=1.2e+02 Score=29.79 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcE-EEEEcCCCh------------------HHHHHHHhcccCCCCCC
Q 024468 10 RGELRIHESVEELSTNLADYIADLSEASVKERGVF-AIALSGGSL------------------IGLMGKLCEAPYNKTVD 70 (267)
Q Consensus 10 ~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~-~l~lsGGst------------------p~~l~~ll~~~~~~~i~ 70 (267)
.+.+.|..--.||+.++.+...+ +...... +.++.||.+ |..+++++. .+.++
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~-----~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le---~g~~~ 236 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEARE-----FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLE---EGSLN 236 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHH-----HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHH---cCCcc
Confidence 45444444445677776666643 2233333 788899965 333334443 36899
Q ss_pred CCceeEEeecee--ccCCCChhhHHHHHHHHhcccCCCCCCCCeEeC
Q 024468 71 WAKWYIFWADER--VVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSI 115 (267)
Q Consensus 71 w~~v~~f~~DEr--~vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~ 115 (267)
.+++.+.-+||= .+..+ +...+++ ++.++ +-+..|...+
T Consensus 237 l~~v~ylVLDEADrMldmG----Fe~qI~~-Il~~i-~~~~rQtlm~ 277 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMG----FEPQIRK-ILSQI-PRPDRQTLMF 277 (519)
T ss_pred ccceeEEEeccHHhhhccc----cHHHHHH-HHHhc-CCCcccEEEE
Confidence 999999999994 22222 5556655 44545 3233344443
No 36
>PRK13980 NAD synthetase; Provisional
Probab=40.07 E-value=1.1e+02 Score=26.98 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeecee
Q 024468 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (267)
|.+.+.+.+...|.+ .+.+. ..+.++||||-.=..+..++... +.=.++..+.++-.
T Consensus 9 ~~~~~~~~l~~~l~~----~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~----~~~~~v~av~~~~~ 67 (265)
T PRK13980 9 DYEKVREIIVDFIRE----EVEKAGAKGVVLGLSGGIDSAVVAYLAVKA----LGKENVLALLMPSS 67 (265)
T ss_pred CHHHHHHHHHHHHHH----HHHHcCCCcEEEECCCCHHHHHHHHHHHHH----hCccceEEEEeeCC
Confidence 556565555555554 45443 58999999994322333333321 11135777777654
No 37
>PRK00074 guaA GMP synthase; Reviewed
Probab=39.56 E-value=82 Score=30.83 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCC
Q 024468 30 IADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (267)
Q Consensus 30 i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (267)
..+.|++.+. .+++.+|+|||-.=..+..++... +. .++..+.+|....+.
T Consensus 205 ~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~----lg-~~v~av~vd~g~~~~ 255 (511)
T PRK00074 205 AIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKA----IG-DQLTCVFVDHGLLRK 255 (511)
T ss_pred HHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHH----hC-CceEEEEEeCCCCCH
Confidence 3344555554 478999999994433343444321 12 468888889877553
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=38.94 E-value=1.2e+02 Score=29.50 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=49.1
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCC
Q 024468 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWA 72 (267)
Q Consensus 11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~ 72 (267)
.-+++.++. +|+.++.+.+. .....-+.-+.++.||. ||..+..++.. ..+..+
T Consensus 198 ~aLIL~PTr-eLa~Qi~~~~~----~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~---~~~~l~ 269 (518)
T PLN00206 198 LAMVLTPTR-ELCVQVEDQAK----VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK---HDIELD 269 (518)
T ss_pred eEEEEeCCH-HHHHHHHHHHH----HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc---CCccch
Confidence 456777775 45444444432 22222233345566664 34444445443 367889
Q ss_pred ceeEEeeceec--cCCCChhhHHHHHHHHhcccCCCCCCCCeEeCCCCC
Q 024468 73 KWYIFWADERV--VAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL 119 (267)
Q Consensus 73 ~v~~f~~DEr~--vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~ 119 (267)
++.++-+||-- +.. .+...+.+ ++..+ +..|+..+..+.
T Consensus 270 ~v~~lViDEad~ml~~----gf~~~i~~-i~~~l---~~~q~l~~SATl 310 (518)
T PLN00206 270 NVSVLVLDEVDCMLER----GFRDQVMQ-IFQAL---SQPQVLLFSATV 310 (518)
T ss_pred heeEEEeecHHHHhhc----chHHHHHH-HHHhC---CCCcEEEEEeeC
Confidence 99999999964 221 23334433 33333 345666654443
No 39
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=38.47 E-value=1.3e+02 Score=26.09 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCChHHHHHH
Q 024468 21 ELSTNLADYIADLSEASVKE-RGVFAIALSGGSLIGLMGK 59 (267)
Q Consensus 21 ~l~~~~a~~i~~~i~~~i~~-~~~~~l~lsGGstp~~l~~ 59 (267)
+=+..+++.|.+.+.+.-+. +....+.++||.--..+|-
T Consensus 91 ~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~ 130 (224)
T PF09623_consen 91 EDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYA 130 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHH
Confidence 34556777777777765555 5677899999988777774
No 40
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=38.40 E-value=2.7e+02 Score=24.30 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=24.7
Q ss_pred hcCcEEEEEcCCChHHHHHHHhcccC-CCCCCCCceeEEeeceec
Q 024468 40 ERGVFAIALSGGSLIGLMGKLCEAPY-NKTVDWAKWYIFWADERV 83 (267)
Q Consensus 40 ~~~~~~l~lsGGstp~~l~~ll~~~~-~~~i~w~~v~~f~~DEr~ 83 (267)
...+..||+|||..=..+..++.... ...+++ ++..+.+|...
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~-~l~av~vd~g~ 71 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINF-ELVAVNLDQKQ 71 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCe-EEEEEEecCCC
Confidence 45678999999955444444443211 112222 57777788754
No 41
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=38.08 E-value=21 Score=18.15 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=9.5
Q ss_pred cCCCCceeccCC
Q 024468 159 MGSDGHVASLFP 170 (267)
Q Consensus 159 ~G~DGHiAslfP 170 (267)
-|..||++..-|
T Consensus 6 C~~~GH~~~~Cp 17 (18)
T PF00098_consen 6 CGEPGHIARDCP 17 (18)
T ss_dssp TSCSSSCGCTSS
T ss_pred CCCcCcccccCc
Confidence 378899998766
No 42
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=37.78 E-value=1.1e+02 Score=29.16 Aligned_cols=71 Identities=17% Similarity=0.375 Sum_probs=42.0
Q ss_pred cceEEEeccCCCCceeccCCCCCc--cccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHh
Q 024468 151 KFDLILLGMGSDGHVASLFPNHSV--LDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID 227 (267)
Q Consensus 151 ~~Dl~lLG~G~DGHiAslfP~~~~--~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~ 227 (267)
.+|.++|--|.|||=.-.-||... ..+...+|......|.. +-.++ .+. .++++++-.|.=-.++-+-++.
T Consensus 108 ~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~--~~le~---dls-~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 108 NYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPEN--QNLEP---DLS-GRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred cccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcc--cccCc---ccc-cceEEEEccCchhhhhhhhhhC
Confidence 689999999999999999999742 11111122111111211 11111 122 7888888888776676665554
No 43
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=37.13 E-value=1.6e+02 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=19.9
Q ss_pred cEEEEEcCCChHHHHHHHhccc-CCCCCCCCceeEEeecee
Q 024468 43 VFAIALSGGSLIGLMGKLCEAP-YNKTVDWAKWYIFWADER 82 (267)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~-~~~~i~w~~v~~f~~DEr 82 (267)
++.+++|||..=..+..++... ....+++ ++..+.+|--
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~-~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGF-ELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCe-EEEEEEEECC
Confidence 3679999995433333333221 0111233 3677777743
No 44
>PLN02772 guanylate kinase
Probab=36.70 E-value=49 Score=31.39 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHhccceeEEE--eCccHHHHHHHHHhCCCCCCcccccccccc------CCCeEEEEecHHHHhh
Q 024468 202 VINSASIVVVVV--TGESKAEAVHLAIDDLGPNCPSLPARMAQP------TNGKLVWFLDKPAASK 259 (267)
Q Consensus 202 ~i~~A~~iill~--~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~------~~~~~~~~~D~~Aa~~ 259 (267)
.....+++++++ +|..|..++++++...+. .-.++++.-.. ..+.-++|++++....
T Consensus 130 ~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~-~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~ 194 (398)
T PLN02772 130 VRGNAEKPIVISGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAPREMEKDGVHYHFTERSVMEK 194 (398)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhhhccc-cccccccccCCCCcccccCCceEeeCCHHHHHH
Confidence 334456666666 788999999998775321 12233333221 1223478888665443
No 45
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=36.54 E-value=36 Score=25.03 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=28.5
Q ss_pred cCCChH--HHHHHHhcccCCCCCCCCceeEEeeceecc-CCCChhh
Q 024468 49 SGGSLI--GLMGKLCEAPYNKTVDWAKWYIFWADERVV-AKNHSDS 91 (267)
Q Consensus 49 sGGstp--~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v-p~~~~~S 91 (267)
.-|-|| ..+|..+..- ...+.|+.=.|..+||-.+ ||-.+++
T Consensus 29 ~~~vs~egQ~lF~~l~Kt-~~dv~W~g~~IiV~d~V~I~pPY~~~n 73 (91)
T PF09793_consen 29 GPGVSPEGQKLFDALSKT-IPDVRWDGKNIIVLDEVKISPPYKVEN 73 (91)
T ss_pred CCCcCHHHHHHHHHHHhh-CCCCEECCCeEEEeCceEEcCCCCccc
Confidence 357776 6678766542 1348999999999998775 6554443
No 46
>PTZ00110 helicase; Provisional
Probab=35.67 E-value=97 Score=30.49 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=37.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCc
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAK 73 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~ 73 (267)
-+++.++. +|++++.+.+.. .....+--..++.||. ||..+.+++.. ..++.++
T Consensus 206 ~LIL~PTr-eLa~Qi~~~~~~----~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~---~~~~l~~ 277 (545)
T PTZ00110 206 VLVLAPTR-ELAEQIREQCNK----FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES---NVTNLRR 277 (545)
T ss_pred EEEECChH-HHHHHHHHHHHH----HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc---CCCChhh
Confidence 45666765 566655555443 2222222244455653 45555555543 3567899
Q ss_pred eeEEeeceec
Q 024468 74 WYIFWADERV 83 (267)
Q Consensus 74 v~~f~~DEr~ 83 (267)
+.++-+||--
T Consensus 278 v~~lViDEAd 287 (545)
T PTZ00110 278 VTYLVLDEAD 287 (545)
T ss_pred CcEEEeehHH
Confidence 9999999974
No 47
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=35.17 E-value=99 Score=30.22 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=41.8
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCChHHHHHHHhc---------------ccCCCCCCCCcee
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKER-GVFAIALSGGSLIGLMGKLCE---------------APYNKTVDWAKWY 75 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~-~~~~l~lsGGstp~~l~~ll~---------------~~~~~~i~w~~v~ 75 (267)
-+++.+|. ||+.++++.+... .... +--++.+.||.+...-...+. ......++.+++.
T Consensus 102 aLil~PTR-ELA~Qi~~~~~~~----~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 102 ALILAPTR-ELAVQIAEELRKL----GKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred eEEECCCH-HHHHHHHHHHHHH----HhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcC
Confidence 68888997 7777777777643 2222 233677788875422222111 1223478999999
Q ss_pred EEeecee
Q 024468 76 IFWADER 82 (267)
Q Consensus 76 ~f~~DEr 82 (267)
++-+||=
T Consensus 177 ~lVlDEA 183 (513)
T COG0513 177 TLVLDEA 183 (513)
T ss_pred EEEeccH
Confidence 9999994
No 48
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=35.06 E-value=2.3e+02 Score=27.16 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=57.2
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHH--HHHhcccCCCCCCCCceeEEeec--ee
Q 024468 7 HRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM--GKLCEAPYNKTVDWAKWYIFWAD--ER 82 (267)
Q Consensus 7 ~~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l--~~ll~~~~~~~i~w~~v~~f~~D--Er 82 (267)
...+.+++.++|.+|..+.+.+.+. +++.-.++.++..+...+ .+.|.. .. +.++..| ||
T Consensus 61 ~~~g~~v~~a~t~~eA~~~v~~i~~--------~~~~~~vv~~kS~~~eeigl~~~L~~---~g-----~~~~etdlge~ 124 (432)
T TIGR00273 61 TQRGGHVYYAKTAEEARKIIGKVAQ--------EKNGKKVVKSKSMVSEEIGLNEVLEK---IG-----IEVWETDLGEL 124 (432)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHH--------HhCCCEEEEcCchHHHHhCCHHHHHh---CC-----CeeeeCccHHH
Confidence 4567889999999887766655553 445667777765444333 455543 12 2344433 44
Q ss_pred ccCCCCh----------hhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhh
Q 024468 83 VVAKNHS----------DSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVK 137 (267)
Q Consensus 83 ~vp~~~~----------~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~ 137 (267)
++...+. .-+...+.+.|-+.+ +.+ ...++++....-.+.+++.+.
T Consensus 125 i~ql~~~~pshiv~Paih~~r~~i~~~f~~~~-~~~--------~~~~~~~l~~~~r~~lR~~~~ 180 (432)
T TIGR00273 125 ILQLDGDPPSHIVVPALHKNRQQIGEILKERL-GYE--------GEESPEVLAREARKFMREKFL 180 (432)
T ss_pred HhhhccCCCceeeeccccCCHHHHHHHHHHhc-cCC--------CCCCHHHHHHHHHHHHHHHHh
Confidence 4222111 123444555554444 322 123677766666677776543
No 49
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=34.96 E-value=25 Score=29.13 Aligned_cols=22 Identities=36% Similarity=0.776 Sum_probs=17.6
Q ss_pred CcceEEEeccCCCCceeccCCC
Q 024468 150 PKFDLILLGMGSDGHVASLFPN 171 (267)
Q Consensus 150 ~~~Dl~lLG~G~DGHiAslfP~ 171 (267)
|.+|+.++|+|.+-|.--+-|.
T Consensus 110 PkidlLIvG~Gd~~~p~~v~~~ 131 (196)
T KOG3363|consen 110 PKIDLLIVGCGDKKHPDKVRPS 131 (196)
T ss_pred CCccEEEEecCCcCCchhcCHH
Confidence 6899999999999987544443
No 50
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=34.54 E-value=41 Score=19.70 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=10.8
Q ss_pred cCcEEEEE-cCCChHHH
Q 024468 41 RGVFAIAL-SGGSLIGL 56 (267)
Q Consensus 41 ~~~~~l~l-sGGstp~~ 56 (267)
+|...|++ ++|.+|..
T Consensus 2 ~g~LqI~ISTnG~sP~l 18 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRL 18 (30)
T ss_dssp -TTEEEEEEESSS-HHH
T ss_pred CCCeEEEEECCCCChHH
Confidence 57888999 56888854
No 51
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=33.67 E-value=4.3e+02 Score=25.98 Aligned_cols=116 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred EEeCCHHHHHHHHH-------HHHHHHHHHHHHhcCcEE-EEE--cCC--ChHHHHHHHhcccCCCCCCCCceeE-Eeec
Q 024468 14 RIHESVEELSTNLA-------DYIADLSEASVKERGVFA-IAL--SGG--SLIGLMGKLCEAPYNKTVDWAKWYI-FWAD 80 (267)
Q Consensus 14 ~i~~~~~~l~~~~a-------~~i~~~i~~~i~~~~~~~-l~l--sGG--stp~~l~~ll~~~~~~~i~w~~v~~-f~~D 80 (267)
+++++...+.+++. +.+.+.++.+.+.++..+ ++| .|| |-..-++.++....+..+ ++|.+ .++|
T Consensus 71 iv~q~~~ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~--~~v~vH~~~D 148 (501)
T TIGR01307 71 VVYQDLVRISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGI--EKVVLHAFTD 148 (501)
T ss_pred eeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCC--CeEEEEEecC
Confidence 46777777777764 345555666655567775 555 466 445566666554322334 45554 5789
Q ss_pred eeccCCCChhhHHHHHHHHhcc----cCCCCCCCCeEeCCCCCCHHHHHHHHHHHH
Q 024468 81 ERVVAKNHSDSNYKLAKEGLLS----KQVPIVPSHVHSINDSLSAEEAADEYEFDI 132 (267)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~----~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i 132 (267)
=|=+|+.+-..+...+.+.+-. ++ +----+.|.|+-+...+..-.+|+...
T Consensus 149 GRD~~p~s~~~~~~~l~~~~~~~~~~~i-asv~GRyyaMDRd~rw~rv~~ay~~~~ 203 (501)
T TIGR01307 149 GRDTAPKSAESYLEQLQAFLKEIGNGRI-ATISGRYYAMDRDQRWDRVEIAYKAIT 203 (501)
T ss_pred CCCCCchhHHHHHHHHHHHHHHhCCEEE-EEEeCcceeecCccchHHHHHHHHHHh
Confidence 9988877777777777665532 22 111236677777666666666666554
No 52
>PRK00876 nadE NAD synthetase; Reviewed
Probab=33.22 E-value=1.9e+02 Score=26.64 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeecee
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (267)
+.++..+.+-+.|.+.++..... ..+.++||||-.=..+..++... +...++..+.++++
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~~-~~VvVgLSGGIDSSvvaaLa~~a----~g~~~v~av~~~~~ 70 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLRR-RGVVLGLSGGIDSSVTAALCVRA----LGKERVYGLLMPER 70 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC-CCEEEEccCCHHHHHHHHHHHHh----hCCCcEEEEEecCC
Confidence 44555555555554444432222 37899999993322333333221 11246776777754
No 53
>PTZ00323 NAD+ synthase; Provisional
Probab=33.07 E-value=64 Score=29.28 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGS 52 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs 52 (267)
|++++.+...+.|.+.+++. ..+.++|+||||-
T Consensus 25 ~~~~~i~~~~~~L~~~l~~~--g~~~vVVglSGGV 57 (294)
T PTZ00323 25 NPAAWIEKKCAKLNEYMRRC--GLKGCVTSVSGGI 57 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHc--CCCcEEEECCCCH
Confidence 45556655555555433331 2678999999993
No 54
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=33.02 E-value=1.9e+02 Score=20.86 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.8
Q ss_pred cceEEEeccCCCCceeccCCCC
Q 024468 151 KFDLILLGMGSDGHVASLFPNH 172 (267)
Q Consensus 151 ~~Dl~lLG~G~DGHiAslfP~~ 172 (267)
.+|++++|....+.+...+-++
T Consensus 93 ~~dlvvig~~~~~~~~~~~~~~ 114 (130)
T cd00293 93 GADLIVMGSRGRSGLRRLLLGS 114 (130)
T ss_pred CCCEEEEcCCCCCccceeeecc
Confidence 6899999988777665444443
No 55
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=32.48 E-value=2.7e+02 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=22.4
Q ss_pred cEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
++.+++|||..=..+..++.... ....+ ++..+.+|.-+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~-~~~~~-~v~~v~vd~g~ 39 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQ-PKLKI-RLIAAHVDHGL 39 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-HHcCC-CEEEEEeCCCC
Confidence 36899999955334433332210 01233 48888999876
No 56
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=31.81 E-value=2.9e+02 Score=24.70 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceecc
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVV 84 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v 84 (267)
+.++..+.+.+.|.+.+++ ...+.++++||||-.=.....++...-.....-.++.-+.+..+.+
T Consensus 4 d~~~~~~~~~~fl~~~l~~--~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~ 68 (268)
T COG0171 4 DLEEEINRLVDFLRDYLKK--AGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYT 68 (268)
T ss_pred CHHHHHHHHHHHHHHHHHH--cCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCc
Confidence 5667777777777766552 2456789999999432222222221100122234566666766654
No 57
>PRK00768 nadE NAD synthetase; Reviewed
Probab=31.78 E-value=67 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCC
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGG 51 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGG 51 (267)
+++...+.+.++|.+.+++. .-..++|+||||
T Consensus 17 ~~~~~~~~i~~~L~~~l~~~--g~~g~VlGlSGG 48 (268)
T PRK00768 17 DPEEEIRRRVDFLKDYLKKS--GLKSLVLGISGG 48 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHc--CCCeEEEECCCC
Confidence 55555555555555544332 245679999999
No 58
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.72 E-value=2e+02 Score=26.95 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 54 IGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 54 p~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
|..+..++.. ..++++++.++-+||--
T Consensus 141 P~~l~~~l~~---~~~~l~~v~~lViDEad 167 (423)
T PRK04837 141 TGRLIDYAKQ---NHINLGAIQVVVLDEAD 167 (423)
T ss_pred HHHHHHHHHc---CCcccccccEEEEecHH
Confidence 4445555433 46789999999999964
No 59
>PRK00919 GMP synthase subunit B; Validated
Probab=31.54 E-value=1.3e+02 Score=27.37 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCC
Q 024468 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (267)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~ 88 (267)
+.|++.+.. +++.+++|||-.=..+..++... +. .+++.+.+|.-..+.++
T Consensus 13 ~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~----lG-~~v~aV~vD~G~~~~~E 63 (307)
T PRK00919 13 EEIREEIGD-GKAIIALSGGVDSSVAAVLAHRA----IG-DRLTPVFVDTGLMRKGE 63 (307)
T ss_pred HHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHH----hC-CeEEEEEEECCCCCHHH
Confidence 445555654 89999999994432333344321 12 36888889977665333
No 60
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=31.34 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhcC--cEEEEEcCCChHHHHHH
Q 024468 25 NLADYIADLSEASVKERG--VFAIALSGGSLIGLMGK 59 (267)
Q Consensus 25 ~~a~~i~~~i~~~i~~~~--~~~l~lsGGstp~~l~~ 59 (267)
.+++.|.+.+.+.-++.+ +..+.+|||.--..+|-
T Consensus 72 ~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~ 108 (124)
T TIGR03642 72 TFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIIL 108 (124)
T ss_pred HHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHH
Confidence 444466666554433333 58999999988777774
No 61
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=31.14 E-value=1.4e+02 Score=26.03 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeece
Q 024468 33 LSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81 (267)
Q Consensus 33 ~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DE 81 (267)
.+++.+++.+++.+++|||..=..+..++... . .++..+.+|-
T Consensus 4 ~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~-----g-~~v~av~~~~ 46 (252)
T TIGR00268 4 NLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA-----G-TEVLAITVVS 46 (252)
T ss_pred HHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh-----C-CCEEEEEecC
Confidence 45667788899999999994433333344331 1 3466677764
No 62
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=30.52 E-value=1.6e+02 Score=27.73 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=36.4
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCce
Q 024468 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAKW 74 (267)
Q Consensus 13 ~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~v 74 (267)
+++.++ .+|+.++++.+... ....+--+..+.||. ||..+.+++.. ..++.+++
T Consensus 77 lil~Pt-~eLa~Q~~~~~~~l----~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~---~~~~~~~v 148 (434)
T PRK11192 77 LILTPT-RELAMQVADQAREL----AKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE---ENFDCRAV 148 (434)
T ss_pred EEECCc-HHHHHHHHHHHHHH----HccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc---CCcCcccC
Confidence 444555 56777776665432 122232334445553 45555555443 46778899
Q ss_pred eEEeeceec
Q 024468 75 YIFWADERV 83 (267)
Q Consensus 75 ~~f~~DEr~ 83 (267)
.++-+||--
T Consensus 149 ~~lViDEah 157 (434)
T PRK11192 149 ETLILDEAD 157 (434)
T ss_pred CEEEEECHH
Confidence 999999953
No 63
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=30.49 E-value=4e+02 Score=25.42 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc
Q 024468 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE 62 (267)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~ 62 (267)
+.++..+.+.+.+.+.++..+....+..+.||||-.=..+..++.
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~ 274 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIAR 274 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHH
Confidence 566677777777777776666666778889999944334444443
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=30.31 E-value=1.8e+02 Score=30.49 Aligned_cols=113 Identities=13% Similarity=-0.029 Sum_probs=66.9
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEEcCCChHHHHH--------------------HHhcccCCCCCCC
Q 024468 13 LRIHESVEELSTNLADYIADLSEASVKERG-VFAIALSGGSLIGLMG--------------------KLCEAPYNKTVDW 71 (267)
Q Consensus 13 ~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~-~~~l~lsGGstp~~l~--------------------~ll~~~~~~~i~w 71 (267)
+.+|++. +|++-=+ +.+++.+..-+ .+.++.=.|.||..-. .++..........
T Consensus 119 L~lYPtn-ALa~DQ~----~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~ 193 (851)
T COG1205 119 LLLYPTN-ALANDQA----ERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL 193 (851)
T ss_pred EEEechh-hhHhhHH----HHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH
Confidence 6788886 3333333 33344555555 6666665665542222 2233222222334
Q ss_pred CceeEEeeceeccCCCChhhHHHHHHHHhcccCCCCCCC--CeEeC-CCCCCHHHHHHHHHHH
Q 024468 72 AKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPS--HVHSI-NDSLSAEEAADEYEFD 131 (267)
Q Consensus 72 ~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~~i~~~--~~~~~-~~~~d~~~~a~~y~~~ 131 (267)
+++.++-+||-.+=..--.||-.++-+.|+..+ ..... ++... .+.++|.+.+..+...
T Consensus 194 ~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~-~~~~~~~q~i~~SAT~~np~e~~~~l~~~ 255 (851)
T COG1205 194 RNLKYLVVDELHTYRGVQGSEVALLLRRLLRRL-RRYGSPLQIICTSATLANPGEFAEELFGR 255 (851)
T ss_pred hcCcEEEEecceeccccchhHHHHHHHHHHHHH-hccCCCceEEEEeccccChHHHHHHhcCC
Confidence 789999999988767778899999988898877 53333 34433 3335787767666443
No 65
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=30.10 E-value=2.5e+02 Score=24.37 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHh--cCcEEEEEcCCChHHHHHHHh
Q 024468 27 ADYIADLSEASVKE--RGVFAIALSGGSLIGLMGKLC 61 (267)
Q Consensus 27 a~~i~~~i~~~i~~--~~~~~l~lsGGstp~~l~~ll 61 (267)
.+.+.+.+++.+++ ...+.|+||||-.=..+..++
T Consensus 6 ~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~ 42 (250)
T TIGR00552 6 VEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC 42 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH
Confidence 34455555556654 457899999994322333344
No 66
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=28.95 E-value=1.3e+02 Score=25.40 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=28.4
Q ss_pred HHHHHHhcC-cEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeece
Q 024468 34 SEASVKERG-VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81 (267)
Q Consensus 34 i~~~i~~~~-~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DE 81 (267)
|+.++++-+ ++.+..|||..=..+..|+.... .++.++++|-
T Consensus 5 l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~------~~~~v~f~DT 47 (212)
T TIGR00434 5 IAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKIS------PDIPVIFLDT 47 (212)
T ss_pred HHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcC------CCCcEEEecC
Confidence 445666555 88999999977777777776521 2456777774
No 67
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=28.21 E-value=2.2e+02 Score=27.09 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=38.6
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCC
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKER-GVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWA 72 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~-~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~ 72 (267)
-+++.++. +|+.+.++.+... .... +.-+..+.||. ||..++.++.. ..++++
T Consensus 75 ~lil~Ptr-eLa~Q~~~~~~~~----~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~---~~~~l~ 146 (460)
T PRK11776 75 ALVLCPTR-ELADQVAKEIRRL----ARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK---GTLDLD 146 (460)
T ss_pred EEEEeCCH-HHHHHHHHHHHHH----HhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc---CCccHH
Confidence 35667775 5666666655432 2222 22344556664 45555555543 467889
Q ss_pred ceeEEeeceec
Q 024468 73 KWYIFWADERV 83 (267)
Q Consensus 73 ~v~~f~~DEr~ 83 (267)
++.++-+||--
T Consensus 147 ~l~~lViDEad 157 (460)
T PRK11776 147 ALNTLVLDEAD 157 (460)
T ss_pred HCCEEEEECHH
Confidence 99999999985
No 68
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=28.17 E-value=66 Score=28.18 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 25 NLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 25 ~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
++.+.|.+.+++. ..+.++|+||||-.=.....++... +.=+++.-+.++-..
T Consensus 4 ~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~A----lg~~~v~~v~mp~~~ 56 (242)
T PF02540_consen 4 ALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKA----LGPDNVLAVIMPSGF 56 (242)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHH----HGGGEEEEEEEESST
T ss_pred HHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHH----hhhcccccccccccc
Confidence 3444444433322 3468999999993322223333221 112567777777433
No 69
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=28.08 E-value=1.9e+02 Score=26.33 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhccc-CCCCCCCCceeEEeeceec
Q 024468 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAP-YNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~-~~~~i~w~~v~~f~~DEr~ 83 (267)
..|++++++.++..+++|||..=..+..++... ...++ .+.++.+|.-+
T Consensus 18 ~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~---~~~vl~iDTG~ 67 (301)
T PRK05253 18 HILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKL---PFPLLHVDTGW 67 (301)
T ss_pred HHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCC---CeeEEEEeCCC
Confidence 556677888889999999997655666665432 11122 24677778654
No 70
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=25.96 E-value=3.1e+02 Score=27.68 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=39.8
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCce
Q 024468 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAKW 74 (267)
Q Consensus 13 ~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~v 74 (267)
+++.++. +|+.++++.+...... ..+.-++.+.||. ||..+++++.. ..++.+++
T Consensus 78 LIL~PTr-eLa~Qv~~~l~~~~~~---~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r---~~l~l~~l 150 (629)
T PRK11634 78 LVLAPTR-ELAVQVAEAMTDFSKH---MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR---GTLDLSKL 150 (629)
T ss_pred EEEeCcH-HHHHHHHHHHHHHHhh---cCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc---CCcchhhc
Confidence 5667775 6777777776543221 1234455666664 46566655543 46788999
Q ss_pred eEEeecee
Q 024468 75 YIFWADER 82 (267)
Q Consensus 75 ~~f~~DEr 82 (267)
.++-+||-
T Consensus 151 ~~lVlDEA 158 (629)
T PRK11634 151 SGLVLDEA 158 (629)
T ss_pred eEEEeccH
Confidence 99999996
No 71
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=25.34 E-value=1.1e+02 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHHH
Q 024468 24 TNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGKL 60 (267)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~l 60 (267)
+.+++.+.+.+++++++.+.-.|+|+||--- ..+.+.
T Consensus 240 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~ 277 (305)
T TIGR00329 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREM 277 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHH
Confidence 4566777777777777777778999999665 444443
No 72
>PRK05434 phosphoglyceromutase; Provisional
Probab=25.18 E-value=6.6e+02 Score=24.72 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=66.6
Q ss_pred EEeCCHHHHHHHHH-------HHHHHHHHHHHHhcCcEE-EEE--cCC--ChHHHHHHHhcccCCCCCCCCceeE-Eeec
Q 024468 14 RIHESVEELSTNLA-------DYIADLSEASVKERGVFA-IAL--SGG--SLIGLMGKLCEAPYNKTVDWAKWYI-FWAD 80 (267)
Q Consensus 14 ~i~~~~~~l~~~~a-------~~i~~~i~~~i~~~~~~~-l~l--sGG--stp~~l~~ll~~~~~~~i~w~~v~~-f~~D 80 (267)
+++++...+..++. +.+.+.++.+-+.++..+ ++| .|| |...-++.++....+..+ ++|.+ .++|
T Consensus 75 iv~q~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~--~~v~vH~~~D 152 (507)
T PRK05434 75 IVYQDLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGV--KKVYVHAFLD 152 (507)
T ss_pred eeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCC--CEEEEEEecC
Confidence 45677776766665 234444444444556665 555 466 445555665543322344 56554 6789
Q ss_pred eeccCCCChhhHHHHHHHHhcc----cCCCCCCCCeEeCCCCCCHHHHHHHHHHHHH
Q 024468 81 ERVVAKNHSDSNYKLAKEGLLS----KQVPIVPSHVHSINDSLSAEEAADEYEFDIR 133 (267)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~----~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~ 133 (267)
=|=+|+.+-..+...+.+.+-+ .+ +----+.|.|+-+...+.--..|+....
T Consensus 153 GRD~~p~s~~~~i~~l~~~~~~~~~~~i-asv~GRyyamDRd~rw~rv~~a~~~~~~ 208 (507)
T PRK05434 153 GRDTPPKSALGYLEELEAKLAELGVGRI-ASVSGRYYAMDRDKRWDRVEKAYDALVL 208 (507)
T ss_pred CCCCCchhHHHHHHHHHHHHHHhCCeeE-EEEeccccccccccchHHHHHHHHHHhc
Confidence 9988877666666666665532 11 1112356667766666665666655543
No 73
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=25.00 E-value=89 Score=29.89 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
..+.+.+....+..||+|||..=..+..++.........+ +++.+.+|.-+
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~-~l~a~hvnhgl 56 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGV-TLRAIHVHHGL 56 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCC-eEEEEEEeCCC
Confidence 4455667778899999999955444544443211011122 57888888655
No 74
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=24.97 E-value=2.5e+02 Score=25.36 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=27.7
Q ss_pred cEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHH
Q 024468 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKE 98 (267)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~ 98 (267)
++.+|+|||-.=..+..++... +- .++..+.+|--..+.++.+.-..+.++
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~----lG-~~v~aV~vd~g~~~~~E~~~~~~~~~~ 51 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA----IG-DRLTCVFVDNGLLRKNEAERVEELFSK 51 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH----hC-CcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 3578999994433444444331 12 257888888766554433333333333
No 75
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=24.30 E-value=1.1e+02 Score=27.87 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHHHh
Q 024468 24 TNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGKLC 61 (267)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~ll 61 (267)
..+++.+.+.++.+.++.+.-.|+++||--- ..+.+.+
T Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l 279 (314)
T TIGR03723 241 AAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERL 279 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHH
Confidence 4566777777777777777778999999665 3334433
No 76
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=24.28 E-value=4.8e+02 Score=22.71 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCcEEEEEc--CCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHhcccCCCC
Q 024468 30 IADLSEASVKERGVFAIALS--GGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPI 107 (267)
Q Consensus 30 i~~~i~~~i~~~~~~~l~ls--GGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~~i 107 (267)
+.+.++.+-+....+.+.+. +..+|..+.+++....+...+ .|...|= +..-.|...+.+++. +-+.+ ++
T Consensus 112 ~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~i~l~DT--~G~~~P~~v~~lv~~-l~~~~-~~ 183 (259)
T cd07939 112 LRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD----RLRFADT--VGILDPFTTYELIRR-LRAAT-DL 183 (259)
T ss_pred HHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC----EEEeCCC--CCCCCHHHHHHHHHH-HHHhc-CC
Confidence 33333333333334455553 345566666665543222333 3566662 344466666655544 22333 32
Q ss_pred CCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCC
Q 024468 108 VPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGS 161 (267)
Q Consensus 108 ~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~ 161 (267)
+=.+|.=|... -+....-+.++. +...+|..+.|||+
T Consensus 184 -~l~~H~Hn~~G---la~An~laAi~a-------------G~~~vd~s~~G~G~ 220 (259)
T cd07939 184 -PLEFHAHNDLG---LATANTLAAVRA-------------GATHVSVTVNGLGE 220 (259)
T ss_pred -eEEEEecCCCC---hHHHHHHHHHHh-------------CCCEEEEecccccc
Confidence 12445433322 122222223332 23479999999994
No 77
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.99 E-value=89 Score=25.31 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHHhcCcEEEEEcCCChH-HHHHHH----hcccCCCCCCCCceeEEeecee
Q 024468 33 LSEASVKERGVFAIALSGGSLI-GLMGKL----CEAPYNKTVDWAKWYIFWADER 82 (267)
Q Consensus 33 ~i~~~i~~~~~~~l~lsGGstp-~~l~~l----l~~~~~~~i~w~~v~~f~~DEr 82 (267)
.+.+.|.++..-+|+++|-++- ..+++. +.... ..-.+..+.+.++||=
T Consensus 54 ~l~~~i~~~kP~vI~v~g~~~~s~~l~~~v~~~v~~~~-~~~~~~~i~V~~v~~~ 107 (150)
T PF14639_consen 54 RLKKFIEKHKPDVIAVGGNSRESRKLYDDVRDIVEELD-EDEQMPPIPVVIVDDE 107 (150)
T ss_dssp HHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT-B-TTS-B--EEE---T
T ss_pred HHHHHHHHcCCeEEEEcCCChhHHHHHHHHHHHHHHhh-hcccCCCceEEEECcH
Confidence 3345666777778888665443 556543 33221 2235677888888874
No 78
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=23.89 E-value=1.1e+02 Score=27.78 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHHHh
Q 024468 24 TNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGKLC 61 (267)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~ll 61 (267)
..+++.+.+.+++..++.+.-+|+|+||--- ..+.+.+
T Consensus 224 ~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l 262 (322)
T TIGR03722 224 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREML 262 (322)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHH
Confidence 3455566666666666667778999999654 3334433
No 79
>PRK06850 hypothetical protein; Provisional
Probab=23.58 E-value=2.3e+02 Score=27.92 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=23.8
Q ss_pred hcCcEEEEEcCCChHHHH----HHHhcccCCCCCCCCceeEEeeceec
Q 024468 40 ERGVFAIALSGGSLIGLM----GKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 40 ~~~~~~l~lsGGstp~~l----~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
.+...+|++|||..=..+ ++.+....... .-..|+++..|=-+
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~-r~k~v~Vi~~DTgv 79 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEK-RTKPVYVISSDTLV 79 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHHHHhcchhc-cCCcEEEEECCCCC
Confidence 455689999999443233 33332211111 12578888888644
No 80
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=23.39 E-value=2e+02 Score=24.76 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHH-hcCcEEEEEcCCChHHHHHH
Q 024468 23 STNLADYIADLSEASVK-ERGVFAIALSGGSLIGLMGK 59 (267)
Q Consensus 23 ~~~~a~~i~~~i~~~i~-~~~~~~l~lsGGstp~~l~~ 59 (267)
.+++|+.|.+.+.+.-+ .+-...++++||.--..+|-
T Consensus 99 n~~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~ 136 (209)
T TIGR02584 99 NEAAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYL 136 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHH
Confidence 46788888888877654 33467899999987777763
No 81
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=22.75 E-value=1.4e+02 Score=27.93 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeec
Q 024468 37 SVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWAD 80 (267)
Q Consensus 37 ~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~D 80 (267)
....-++.-|++|||..-..+.+|+.... .+..-++|.+++.|
T Consensus 23 if~~f~~VcVSFSGGKDS~lmLhL~~~~a-r~~~~~~i~VlfiD 65 (407)
T COG3969 23 IFNTFPRVCVSFSGGKDSGLMLHLVAEVA-RENGRDKISVLFID 65 (407)
T ss_pred HHhcCCeEEEEecCCCchhHHHHHHHHHH-HHhCCCceEEEEEc
Confidence 44567888999999977666666543211 12233458888887
No 82
>PRK09604 UGMP family protein; Validated
Probab=22.17 E-value=1.2e+02 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHHHhcc-cCCCCCCCCceeEEeeceeccCCCChhhHHHHH
Q 024468 24 TNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGKLCEA-PYNKTVDWAKWYIFWADERVVAKNHSDSNYKLA 96 (267)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~ll~~-~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l 96 (267)
+.+++.+.+.++.+.++.+.-+|+++||--- ..+.+.+.. ..+ ..+.+|... -+|.+|..-..+..
T Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~-----~g~~v~~~~--~~p~~D~gisIg~a 303 (332)
T PRK09604 236 AAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKK-----RGIEVFIPP--LKLCTDNAAMIAAA 303 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHH-----CCCEEECCC--CCCCcHHHHHHHHH
Confidence 4466777777777777767778999999665 333444332 111 123444433 24666666555444
No 83
>PRK13981 NAD synthetase; Provisional
Probab=21.69 E-value=2.8e+02 Score=27.19 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 19 VEELSTNLADYIADLSEASVKE--RGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~--~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
.+++.+++...|. +.+++ .+.++|+||||-.=..+..++... +.-++|+.+.+.-+.
T Consensus 260 ~~~~~~~l~~~l~----~~~~~~~~~~~vvglSGGiDSa~~a~la~~a----~g~~~v~~~~~p~~~ 318 (540)
T PRK13981 260 EAEDYRALVLGLR----DYVRKNGFPGVVLGLSGGIDSALVAAIAVDA----LGAERVRAVMMPSRY 318 (540)
T ss_pred HHHHHHHHHHHHH----HHHHHcCCCeEEEECCCCHHHHHHHHHHHHH----hCcCcEEEEECCCCC
Confidence 4455555555554 45544 467899999994322333333221 122467777776554
No 84
>PRK06696 uridine kinase; Validated
Probab=21.59 E-value=1.3e+02 Score=25.62 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-H-HHHHHhcc-cCCCCCCCCceeEEeeceeccC
Q 024468 19 VEELSTNLADYIADLSEASVKERGVFAIALSGGSLI-G-LMGKLCEA-PYNKTVDWAKWYIFWADERVVA 85 (267)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~-~l~~ll~~-~~~~~i~w~~v~~f~~DEr~vp 85 (267)
.+++.+.+|+.|.. ....+.+.|+++|++-- | .+-+.|.. ..... ..+..+.+|.++.+
T Consensus 3 ~~~~~~~la~~~~~-----~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g---~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 3 RKQLIKELAEHILT-----LNLTRPLRVAIDGITASGKTTFADELAEEIKKRG---RPVIRASIDDFHNP 64 (223)
T ss_pred HHHHHHHHHHHHHH-----hCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeccccccCC
Confidence 45667777777753 23556889999986442 3 33344432 21111 23445568888754
No 85
>COG3150 Predicted esterase [General function prediction only]
Probab=21.43 E-value=3e+02 Score=23.20 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468 88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA 166 (267)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA 166 (267)
+|.|....+...+++.. .+..+...+.-..+|.++++..++.|++. +.-+..|.|.|=-|=.|
T Consensus 11 SP~shka~l~~q~~~~~--~~~i~y~~p~l~h~p~~a~~ele~~i~~~--------------~~~~p~ivGssLGGY~A 73 (191)
T COG3150 11 SPGSHKAVLLLQFIDED--VRDIEYSTPHLPHDPQQALKELEKAVQEL--------------GDESPLIVGSSLGGYYA 73 (191)
T ss_pred CcccHHHHHHHHHHhcc--ccceeeecCCCCCCHHHHHHHHHHHHHHc--------------CCCCceEEeecchHHHH
Confidence 78999999988898876 23434443433458999999999999975 22345677777666443
No 86
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=21.12 E-value=1.9e+02 Score=25.49 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHHHhcc
Q 024468 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGKLCEA 63 (267)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~ll~~ 63 (267)
.++.+...+.+.+.+++.++....-.|.|+||++- ..+.+++++
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~ 243 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEK 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHH
Confidence 34555666777777888887766678999999775 445566654
No 87
>KOG3697 consensus Adaptor protein SHC and related proteins [Signal transduction mechanisms]
Probab=21.11 E-value=2.2e+02 Score=25.86 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=49.1
Q ss_pred CCCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHH-HHhcccCCCCCCCCceeEEee
Q 024468 2 AFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLI-GLMG-KLCEAPYNKTVDWAKWYIFWA 79 (267)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~-~ll~~~~~~~i~w~~v~~f~~ 79 (267)
.+|-|+..+|.|.+.-+...+....++ +++-|+.+.-+.|.+.-|..| ...| ...+. ...+|.-.++|-.
T Consensus 77 gr~~lq~a~m~I~itvst~sL~l~~~d-----~kqiianh~m~~isfasGgD~Dt~~~~ayvaK---D~~~rRac~Vlec 148 (345)
T KOG3697|consen 77 GRSNLQFAGMSITLTISTSSLNLMTAD-----CKQIIANHHMQSISFASGGDPDTADYVAYVAK---DPVNRRACHILEC 148 (345)
T ss_pred CccccccCCcceEEEeehhhhhhhhhH-----hhhhhhhccccccccccCCCchhhhHHhhhcc---CccccceeEEEec
Confidence 357788889999988887776655443 234566777778888444444 3333 33433 5689999999987
Q ss_pred cee
Q 024468 80 DER 82 (267)
Q Consensus 80 DEr 82 (267)
|+=
T Consensus 149 ~~g 151 (345)
T KOG3697|consen 149 CDG 151 (345)
T ss_pred cCc
Confidence 764
No 88
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.61 E-value=6.8e+02 Score=23.13 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=45.9
Q ss_pred cEEEEEc-CC-ChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCCChhhHHHHHHHHhcccCCCCCCCCeEeCCCCCC
Q 024468 43 VFAIALS-GG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLS 120 (267)
Q Consensus 43 ~~~l~ls-GG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d 120 (267)
.+.++.. ++ ++|..+.+++....+...+ .|...| -+..-.|...+.+++. +.+.+ +++ =.+|.=|..
T Consensus 128 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~----~i~l~D--T~G~~~P~~v~~lv~~-l~~~~-~v~-l~~H~HNd~-- 196 (365)
T TIGR02660 128 FVSVGGEDASRADPDFLVELAEVAAEAGAD----RFRFAD--TVGILDPFSTYELVRA-LRQAV-DLP-LEMHAHNDL-- 196 (365)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHcCcC----EEEEcc--cCCCCCHHHHHHHHHH-HHHhc-CCe-EEEEecCCC--
Confidence 4455553 23 4455555665442222222 244444 2344567777777655 33333 332 134543322
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCC
Q 024468 121 AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD 162 (267)
Q Consensus 121 ~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D 162 (267)
.-+.+..-..++. +...+|..+.|||+=
T Consensus 197 -GlA~ANalaA~~a-------------Ga~~vd~tl~GiGer 224 (365)
T TIGR02660 197 -GMATANTLAAVRA-------------GATHVNTTVNGLGER 224 (365)
T ss_pred -ChHHHHHHHHHHh-------------CCCEEEEEeeccccc
Confidence 2222222233332 235799999999963
No 89
>PRK08576 hypothetical protein; Provisional
Probab=20.52 E-value=4.6e+02 Score=25.24 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=33.7
Q ss_pred CHHHHHHH---HHHHHHHHHHHHHHhcC--cEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 18 SVEELSTN---LADYIADLSEASVKERG--VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 18 ~~~~l~~~---~a~~i~~~i~~~i~~~~--~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
|.+++.+. .-+.+.+.+.+.+++.+ ++.+++|||..=..+..++... . .++..+++|.=.
T Consensus 206 ~~~~~~e~N~~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~----~--~~V~aV~iDTG~ 270 (438)
T PRK08576 206 SLEKLIEANREVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKA----F--GDVTAVYVDTGY 270 (438)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHh----C--CCCEEEEeCCCC
Confidence 44444444 33444444444566655 8999999995543444444331 1 127778888643
No 90
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.34 E-value=3.4e+02 Score=26.90 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=35.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCh------------------HHHHHHHhcccCCCCCCCCc
Q 024468 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL------------------IGLMGKLCEAPYNKTVDWAK 73 (267)
Q Consensus 12 ~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGst------------------p~~l~~ll~~~~~~~i~w~~ 73 (267)
-+++.++. +|+.++.+.+.. .....+--+..+.||.. |..|+.++... ..+++++
T Consensus 87 aLIl~PTr-eLa~Qi~~~~~~----l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~ 159 (572)
T PRK04537 87 ALILAPTR-ELAIQIHKDAVK----FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHA 159 (572)
T ss_pred EEEEeCcH-HHHHHHHHHHHH----HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhh
Confidence 45566664 566665555433 22222333444556543 44444444321 2366788
Q ss_pred eeEEeeceec
Q 024468 74 WYIFWADERV 83 (267)
Q Consensus 74 v~~f~~DEr~ 83 (267)
+.++-+||--
T Consensus 160 v~~lViDEAh 169 (572)
T PRK04537 160 CEICVLDEAD 169 (572)
T ss_pred eeeeEecCHH
Confidence 8999999964
No 91
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=20.05 E-value=1.8e+02 Score=22.58 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=23.9
Q ss_pred cEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceec
Q 024468 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (267)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (267)
+..+++|||..=..+..++...... . .++.++++|.-+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~--~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L--KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c--cCceEEEeCCCC
Confidence 3578999996655555555432111 1 478888999755
Done!