BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024471
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 26 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFV 85
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 86 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 117
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 26 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 85
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 86 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 117
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 31 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 90
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 91 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 122
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 131 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAV 185
PS+FE G Q E+ T G + A ++++KHWST+I E DFK I+ GLN V
Sbjct: 31 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 90
Query: 186 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 91 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 122
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 145 EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV 204
E+ G A ++ HWST+ E DF IA G N VRIP+G+W A PYV
Sbjct: 50 EYHFCQYLGKDLAKSRLQSHWSTFYQEQDFANIASQGFNLVRIPIGYW-AFQILDDDPYV 108
Query: 205 GGSLRA-LDNAFTWA 218
G + LD A WA
Sbjct: 109 SGLQESYLDQAIGWA 123
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 162 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
++H+ T+I E D + IA G + VR+P + + Y L +D W
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWC 78
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 162 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 218
++H+ T+I E D + IA G + VR+P + + Y L +D W
Sbjct: 22 KEHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWC 78
>pdb|3VDH|A Chain A, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
pdb|3VDH|B Chain B, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
Length = 353
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 150 NGYGPQKAPQVMRKHWST-YIVEDDFKFIAGNGLNAVRIPVGWWMASD 196
NG G K W +D F+ NG NAVRIPV W+ D
Sbjct: 33 NGCGTGKPVATYETFWGQPETTQDXXTFLXQNGFNAVRIPVTWYEHXD 80
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGW 191
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGW 191
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGW 191
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP 224
W I ++ F I G + VRIP+ W + PP + + +D A
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGA------ 83
Query: 225 VPSDITISVTTSQDLTIMGGPVHNTPKYGVPKPMMLWSQ 263
+ + + + +M P + ++ + LW Q
Sbjct: 84 LKRGLAVVINIHHYEELMNDPEEHKERF-----LALWKQ 117
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP 224
W I ++ F I G + VRIP+ W + PP + + +D A
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGA------ 83
Query: 225 VPSDITISVTTSQDLTIMGGPVHNTPKYGVPKPMMLWSQ 263
+ + + + +M P + ++ + LW Q
Sbjct: 84 LKRGLAVVINIHHYEELMNDPEEHKERF-----LALWKQ 117
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 193 MASDPTPPAPYVGGSLRALDNAFTWAGYAFF-----------PVPSDITISVTTSQDLTI 241
+ S P P +P GG +A++ AF + G FF PV I T+QDL
Sbjct: 308 LVSTPVPGSPAAGGVDKAINMAFNFNGSNFFINGASFTPPSVPVLLQILSGAQTAQDLLP 367
Query: 242 MG 243
G
Sbjct: 368 SG 369
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP 224
W I ++ F I G + VRIP+ W + PP + + +D A
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGA------ 83
Query: 225 VPSDITISVTTSQDLTIMGGPVHNTPKYGVPKPMMLWSQ 263
+ + + + +M P + ++ + LW Q
Sbjct: 84 LKRGLAVVINIHHYEELMNDPEEHKERF-----LALWKQ 117
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP 224
W I ++ F I G + VRIP+ W + PP + + +D A
Sbjct: 30 WGVVIKDEFFDIIKEAGFSHVRIPIRWSTHAYAFPPYKIMDRFFKRVDEVINGA------ 83
Query: 225 VPSDITISVTTSQDLTIMGGPVHNTPKYGVPKPMMLWSQ 263
+ + + + +M P + ++ + LW Q
Sbjct: 84 LKRGLAVVINIHHYEELMNDPEEHKERF-----LALWKQ 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,284,951
Number of Sequences: 62578
Number of extensions: 345621
Number of successful extensions: 748
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 24
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)