Query 024471
Match_columns 267
No_of_seqs 238 out of 921
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2730 BglC Endoglucanase [Ca 99.8 4.3E-20 9.4E-25 178.1 6.3 136 124-264 28-172 (407)
2 cd00257 Fascin Fascin-like dom 99.5 7.4E-13 1.6E-17 106.2 12.3 100 16-126 10-114 (119)
3 PF06268 Fascin: Fascin domain 99.5 2.4E-13 5.2E-18 109.0 9.2 94 22-126 12-106 (111)
4 PF00150 Cellulase: Cellulase 99.5 7.4E-14 1.6E-18 124.1 5.6 78 161-239 13-91 (281)
5 cd00257 Fascin Fascin-like dom 98.3 3.8E-06 8.1E-11 67.3 8.8 69 52-126 4-73 (119)
6 TIGR03356 BGL beta-galactosida 98.3 1.7E-06 3.8E-11 84.5 6.7 60 171-231 57-116 (427)
7 PF02449 Glyco_hydro_42: Beta- 98.0 6.4E-06 1.4E-10 78.5 4.3 67 164-235 6-74 (374)
8 PF06229 FRG1: FRG1-like famil 97.8 0.00012 2.6E-09 65.0 8.9 80 37-122 25-106 (191)
9 PF06268 Fascin: Fascin domain 97.8 8.5E-05 1.8E-09 59.4 6.8 65 15-88 43-111 (111)
10 PRK09852 cryptic 6-phospho-bet 97.7 5.5E-05 1.2E-09 75.3 6.7 71 163-235 68-139 (474)
11 PRK15014 6-phospho-beta-glucos 97.4 0.00036 7.8E-09 69.5 7.1 66 163-231 66-132 (477)
12 PF07745 Glyco_hydro_53: Glyco 97.4 0.0004 8.8E-09 66.4 6.5 55 170-231 26-80 (332)
13 COG2723 BglB Beta-glucosidase/ 97.3 0.0011 2.3E-08 65.9 8.7 80 151-237 48-127 (460)
14 PRK13511 6-phospho-beta-galact 97.1 0.0012 2.7E-08 65.5 7.1 66 163-231 51-116 (469)
15 COG3867 Arabinogalactan endo-1 96.9 0.0026 5.6E-08 60.6 7.1 57 171-231 66-126 (403)
16 PF00232 Glyco_hydro_1: Glycos 96.9 0.0014 3.1E-08 64.5 5.3 66 163-231 55-121 (455)
17 TIGR01233 lacG 6-phospho-beta- 96.7 0.0043 9.2E-08 61.7 7.2 60 171-231 56-115 (467)
18 PRK09589 celA 6-phospho-beta-g 96.6 0.0046 9.9E-08 61.7 7.0 66 163-231 64-130 (476)
19 PRK09593 arb 6-phospho-beta-gl 96.6 0.0049 1.1E-07 61.5 7.1 66 163-231 70-136 (478)
20 PF01301 Glyco_hydro_35: Glyco 96.6 0.0024 5.1E-08 60.5 4.7 56 171-228 27-82 (319)
21 PLN02998 beta-glucosidase 96.6 0.0055 1.2E-07 61.5 6.9 66 163-231 79-144 (497)
22 PLN02814 beta-glucosidase 96.5 0.0064 1.4E-07 61.1 7.0 60 171-231 80-139 (504)
23 PLN02849 beta-glucosidase 96.5 0.0061 1.3E-07 61.3 6.8 60 171-231 82-141 (503)
24 smart00642 Aamy Alpha-amylase 96.2 0.018 3.8E-07 49.6 7.3 55 174-229 25-90 (166)
25 PF00128 Alpha-amylase: Alpha 96.2 0.0086 1.9E-07 53.2 5.5 56 173-229 9-72 (316)
26 PF06229 FRG1: FRG1-like famil 96.2 0.011 2.5E-07 52.5 5.9 65 16-89 47-116 (191)
27 PLN00196 alpha-amylase; Provis 95.7 0.033 7.2E-07 54.9 7.5 65 171-236 47-121 (428)
28 COG1874 LacA Beta-galactosidas 95.3 0.024 5.2E-07 59.0 5.0 52 171-227 33-86 (673)
29 PF03198 Glyco_hydro_72: Gluca 95.1 0.041 9E-07 52.4 5.8 53 171-239 56-108 (314)
30 TIGR01515 branching_enzym alph 95.0 0.06 1.3E-06 55.2 7.0 57 171-229 160-226 (613)
31 PRK12313 glycogen branching en 94.9 0.061 1.3E-06 55.3 6.7 54 174-229 177-240 (633)
32 PRK10933 trehalose-6-phosphate 94.7 0.086 1.9E-06 53.5 7.3 56 172-229 37-101 (551)
33 COG1523 PulA Type II secretory 94.7 0.091 2E-06 55.0 7.5 77 160-237 192-295 (697)
34 TIGR02403 trehalose_treC alpha 94.6 0.1 2.3E-06 52.7 7.5 56 173-229 32-95 (543)
35 TIGR02402 trehalose_TreZ malto 94.6 0.09 1.9E-06 53.3 6.9 54 174-229 117-180 (542)
36 PLN02361 alpha-amylase 94.5 0.12 2.5E-06 50.8 7.3 66 163-231 26-101 (401)
37 PF14488 DUF4434: Domain of un 94.1 0.17 3.8E-06 43.7 6.7 64 163-231 20-87 (166)
38 PRK05402 glycogen branching en 94.1 0.12 2.7E-06 54.0 6.8 56 174-231 272-340 (726)
39 PRK09505 malS alpha-amylase; R 93.9 0.16 3.5E-06 53.1 7.4 54 174-229 236-312 (683)
40 TIGR02100 glgX_debranch glycog 93.8 0.12 2.6E-06 54.0 6.2 56 173-229 189-265 (688)
41 PRK03705 glycogen debranching 93.8 0.14 3E-06 53.3 6.5 60 173-234 184-269 (658)
42 PRK09441 cytoplasmic alpha-amy 93.7 0.18 3.9E-06 50.0 6.9 59 169-229 24-101 (479)
43 TIGR02456 treS_nterm trehalose 93.5 0.23 5E-06 50.0 7.5 55 174-229 34-96 (539)
44 PF02836 Glyco_hydro_2_C: Glyc 93.5 0.082 1.8E-06 48.7 3.9 43 171-231 39-81 (298)
45 COG0366 AmyA Glycosidases [Car 93.5 0.13 2.8E-06 49.7 5.4 57 172-230 33-98 (505)
46 PLN02447 1,4-alpha-glucan-bran 93.2 0.2 4.4E-06 52.9 6.6 57 171-229 254-320 (758)
47 PRK10785 maltodextrin glucosid 93.1 0.25 5.4E-06 50.6 6.9 55 173-229 184-246 (598)
48 PLN02784 alpha-amylase 93.0 0.53 1.1E-05 50.5 9.4 63 171-235 524-596 (894)
49 PLN02960 alpha-amylase 92.6 0.27 5.9E-06 52.7 6.6 62 171-235 420-494 (897)
50 PRK12568 glycogen branching en 92.3 0.36 7.8E-06 50.9 7.0 57 171-229 273-339 (730)
51 PLN03059 beta-galactosidase; P 92.0 0.37 7.9E-06 51.5 6.7 66 160-237 56-121 (840)
52 PF01373 Glyco_hydro_14: Glyco 91.7 0.31 6.7E-06 48.0 5.4 57 171-231 19-77 (402)
53 TIGR02401 trehalose_TreY malto 91.5 0.45 9.7E-06 50.8 6.7 57 171-229 19-85 (825)
54 TIGR02104 pulA_typeI pullulana 91.4 0.46 9.9E-06 48.7 6.5 57 172-229 168-249 (605)
55 PLN02801 beta-amylase 91.1 0.75 1.6E-05 46.6 7.5 57 171-231 40-98 (517)
56 PRK14705 glycogen branching en 91.0 0.49 1.1E-05 52.5 6.6 57 171-229 769-835 (1224)
57 PRK14706 glycogen branching en 90.9 0.55 1.2E-05 48.8 6.5 57 171-229 171-237 (639)
58 PLN02161 beta-amylase 90.6 0.91 2E-05 46.1 7.5 57 171-231 120-178 (531)
59 PRK14511 maltooligosyl trehalo 90.4 0.8 1.7E-05 49.3 7.4 57 171-229 23-89 (879)
60 PLN02705 beta-amylase 90.4 0.86 1.9E-05 47.2 7.3 57 171-231 271-329 (681)
61 PRK14507 putative bifunctional 89.9 0.64 1.4E-05 53.1 6.4 57 171-229 761-827 (1693)
62 PLN02803 beta-amylase 89.9 1.1 2.4E-05 45.6 7.5 57 171-231 110-168 (548)
63 PLN00197 beta-amylase; Provisi 89.3 1.3 2.8E-05 45.4 7.5 57 171-231 130-188 (573)
64 PRK14510 putative bifunctional 89.0 0.89 1.9E-05 50.6 6.6 63 171-235 190-275 (1221)
65 PF13204 DUF4038: Protein of u 88.6 1.3 2.9E-05 41.2 6.7 59 173-231 35-111 (289)
66 PLN02905 beta-amylase 88.6 1.5 3.2E-05 45.7 7.4 57 171-231 289-347 (702)
67 PRK10150 beta-D-glucuronidase; 88.5 0.59 1.3E-05 47.6 4.6 41 171-229 316-356 (604)
68 COG3589 Uncharacterized conser 88.2 0.88 1.9E-05 44.1 5.2 55 169-231 14-71 (360)
69 PRK08208 coproporphyrinogen II 87.6 0.83 1.8E-05 44.8 4.9 66 167-235 137-204 (430)
70 PF00167 FGF: Fibroblast growt 87.6 3.4 7.5E-05 33.3 7.7 61 54-119 5-66 (122)
71 PRK05904 coproporphyrinogen II 87.5 0.92 2E-05 43.5 5.0 72 160-235 93-166 (353)
72 TIGR02102 pullulan_Gpos pullul 87.5 1.5 3.2E-05 48.4 7.1 22 208-229 554-575 (1111)
73 KOG0471 Alpha-amylase [Carbohy 87.4 0.99 2.1E-05 46.0 5.4 54 174-229 46-108 (545)
74 KOG0626 Beta-glucosidase, lact 86.8 1.6 3.4E-05 44.5 6.3 75 171-246 94-170 (524)
75 PRK07379 coproporphyrinogen II 86.7 1.1 2.3E-05 43.6 5.1 65 168-235 112-178 (400)
76 PLN02877 alpha-amylase/limit d 86.4 1.9 4.1E-05 47.0 7.1 22 208-229 465-486 (970)
77 PRK09525 lacZ beta-D-galactosi 86.3 1 2.2E-05 49.2 5.1 41 171-229 374-414 (1027)
78 PRK05628 coproporphyrinogen II 85.4 1.4 3.1E-05 42.1 5.1 65 167-235 104-171 (375)
79 PRK08446 coproporphyrinogen II 85.4 1.6 3.4E-05 41.6 5.3 70 161-235 89-161 (350)
80 PRK05799 coproporphyrinogen II 85.3 1.7 3.7E-05 41.4 5.5 66 167-235 95-162 (374)
81 COG0296 GlgB 1,4-alpha-glucan 85.2 2 4.3E-05 44.7 6.3 59 170-229 167-234 (628)
82 PRK10340 ebgA cryptic beta-D-g 85.2 1.1 2.5E-05 48.8 4.8 41 171-229 358-398 (1021)
83 TIGR00539 hemN_rel putative ox 84.7 1.9 4.1E-05 41.1 5.5 66 167-235 96-163 (360)
84 PRK13347 coproporphyrinogen II 84.6 1.4 3E-05 43.5 4.7 65 167-235 148-215 (453)
85 PRK06294 coproporphyrinogen II 83.8 2.1 4.5E-05 41.2 5.4 65 168-236 100-167 (370)
86 PF14871 GHL6: Hypothetical gl 83.1 4.1 8.8E-05 34.0 6.2 55 172-228 4-63 (132)
87 PF05913 DUF871: Bacterial pro 82.2 1.5 3.2E-05 42.6 3.7 50 174-231 20-69 (357)
88 PRK09057 coproporphyrinogen II 81.0 2.3 5E-05 40.9 4.6 73 160-236 94-167 (380)
89 TIGR01210 conserved hypothetic 80.9 2.9 6.2E-05 39.5 5.1 68 166-235 112-181 (313)
90 PF07468 Agglutinin: Agglutini 80.9 10 0.00022 32.9 8.0 73 37-110 40-123 (153)
91 PRK08599 coproporphyrinogen II 80.8 2.8 6.1E-05 40.1 5.1 65 167-235 96-163 (377)
92 PRK05660 HemN family oxidoredu 79.9 3.1 6.7E-05 40.1 5.1 73 160-235 97-170 (378)
93 TIGR01211 ELP3 histone acetylt 79.1 2.4 5.3E-05 43.1 4.2 69 165-235 200-268 (522)
94 TIGR02455 TreS_stutzeri trehal 78.5 6.6 0.00014 41.3 7.1 59 171-230 77-151 (688)
95 PF01229 Glyco_hydro_39: Glyco 78.3 4.5 9.7E-05 40.3 5.8 80 142-234 20-108 (486)
96 PRK09058 coproporphyrinogen II 78.0 3 6.5E-05 41.2 4.5 66 168-236 160-227 (449)
97 COG3250 LacZ Beta-galactosidas 77.9 2.8 6.1E-05 44.9 4.4 42 171-230 324-365 (808)
98 KOG0496 Beta-galactosidase [Ca 76.6 6.3 0.00014 41.2 6.3 68 171-245 52-121 (649)
99 PF04055 Radical_SAM: Radical 76.3 2.2 4.8E-05 33.8 2.5 65 168-235 87-153 (166)
100 PRK06582 coproporphyrinogen II 75.2 4.4 9.6E-05 39.4 4.7 75 159-236 100-174 (390)
101 TIGR01531 glyc_debranch glycog 73.2 9.9 0.00021 43.2 7.2 59 171-229 135-205 (1464)
102 PRK09249 coproporphyrinogen II 72.4 5.6 0.00012 39.2 4.7 65 168-235 148-214 (453)
103 PRK08207 coproporphyrinogen II 71.7 5.4 0.00012 40.2 4.4 67 167-235 265-332 (488)
104 PF01261 AP_endonuc_2: Xylose 71.5 5.3 0.00011 33.4 3.8 61 171-231 74-134 (213)
105 KOG3962 Predicted actin-bundli 71.1 6.7 0.00015 36.1 4.5 71 37-113 81-151 (246)
106 TIGR00538 hemN oxygen-independ 70.9 5.4 0.00012 39.4 4.2 66 167-235 147-214 (455)
107 KOG0470 1,4-alpha-glucan branc 70.8 6.9 0.00015 41.5 5.1 61 169-229 256-331 (757)
108 PRK08898 coproporphyrinogen II 70.2 5.9 0.00013 38.4 4.2 66 167-235 118-184 (394)
109 TIGR03471 HpnJ hopanoid biosyn 68.6 6.7 0.00015 38.7 4.3 64 169-236 285-350 (472)
110 cd03174 DRE_TIM_metallolyase D 67.6 7.5 0.00016 34.6 4.1 59 171-229 77-135 (265)
111 cd07944 DRE_TIM_HOA_like 4-hyd 67.5 15 0.00033 33.8 6.2 49 169-231 83-131 (266)
112 TIGR00542 hxl6Piso_put hexulos 67.4 10 0.00023 34.3 5.1 59 171-231 97-155 (279)
113 cd07948 DRE_TIM_HCS Saccharomy 65.5 9.4 0.0002 35.2 4.4 62 168-231 71-134 (262)
114 TIGR00433 bioB biotin syntheta 62.7 16 0.00034 33.3 5.3 56 168-227 120-176 (296)
115 PF02638 DUF187: Glycosyl hydr 62.2 21 0.00046 33.7 6.2 56 171-226 22-87 (311)
116 TIGR02103 pullul_strch alpha-1 62.1 9.8 0.00021 41.3 4.3 29 207-236 402-433 (898)
117 cd07937 DRE_TIM_PC_TC_5S Pyruv 62.1 21 0.00045 33.0 6.0 49 169-231 92-140 (275)
118 PRK13210 putative L-xylulose 5 61.7 15 0.00032 33.0 4.9 59 171-231 97-155 (284)
119 cd00842 MPP_ASMase acid sphing 60.6 29 0.00064 31.6 6.7 82 156-238 135-228 (296)
120 COG1137 YhbG ABC-type (unclass 60.5 57 0.0012 30.2 8.3 152 49-231 20-198 (243)
121 PF14200 RicinB_lectin_2: Rici 59.8 64 0.0014 24.7 7.6 62 49-112 14-79 (105)
122 cd00058 FGF Acidic and basic f 59.4 54 0.0012 26.9 7.4 56 58-118 7-63 (123)
123 PRK09997 hydroxypyruvate isome 59.4 19 0.00041 32.2 5.2 59 171-231 88-146 (258)
124 PRK13209 L-xylulose 5-phosphat 58.7 15 0.00033 33.1 4.4 59 171-231 102-160 (283)
125 PRK05301 pyrroloquinoline quin 58.5 19 0.00042 34.3 5.3 24 167-190 100-123 (378)
126 smart00729 Elp3 Elongator prot 57.2 20 0.00043 29.5 4.6 59 167-228 96-156 (216)
127 PF04601 DUF569: Protein of un 56.4 1.3E+02 0.0028 25.8 9.9 88 15-113 15-118 (142)
128 PF04343 DUF488: Protein of un 56.4 17 0.00038 29.2 4.0 28 211-239 2-29 (122)
129 TIGR02026 BchE magnesium-proto 56.3 16 0.00035 36.5 4.6 63 170-236 286-350 (497)
130 TIGR03234 OH-pyruv-isom hydrox 55.8 21 0.00046 31.7 4.8 58 172-231 88-145 (254)
131 cd07939 DRE_TIM_NifV Streptomy 55.6 15 0.00033 33.4 3.9 58 170-229 71-130 (259)
132 TIGR01305 GMP_reduct_1 guanosi 55.1 37 0.00081 33.0 6.6 70 157-228 140-218 (343)
133 PRK08195 4-hyroxy-2-oxovalerat 54.7 38 0.00083 32.4 6.6 49 169-231 89-137 (337)
134 cd07938 DRE_TIM_HMGL 3-hydroxy 53.5 20 0.00044 33.1 4.4 62 169-231 74-136 (274)
135 cd02742 GH20_hexosaminidase Be 53.3 36 0.00078 31.8 6.1 60 174-235 22-96 (303)
136 PF10566 Glyco_hydro_97: Glyco 52.5 35 0.00076 32.1 5.8 49 171-231 109-157 (273)
137 PRK07094 biotin synthase; Prov 52.3 17 0.00037 33.8 3.8 55 169-228 127-184 (323)
138 PF13378 MR_MLE_C: Enolase C-t 52.3 48 0.001 25.7 5.8 48 167-227 3-51 (111)
139 PRK05664 threonine-phosphate d 52.2 34 0.00074 31.7 5.8 56 176-231 102-166 (330)
140 TIGR03217 4OH_2_O_val_ald 4-hy 52.1 44 0.00095 32.0 6.5 48 170-231 89-136 (333)
141 TIGR02090 LEU1_arch isopropylm 52.1 18 0.0004 34.8 4.0 61 169-231 72-134 (363)
142 PRK13397 3-deoxy-7-phosphohept 51.1 57 0.0012 30.3 6.9 50 177-231 38-88 (250)
143 PRK05692 hydroxymethylglutaryl 50.8 23 0.00049 33.2 4.3 59 170-230 81-141 (287)
144 smart00442 FGF Acidic and basi 50.6 82 0.0018 25.9 7.1 58 57-119 10-68 (126)
145 TIGR02109 PQQ_syn_pqqE coenzym 50.3 28 0.0006 32.8 4.8 60 167-229 91-152 (358)
146 cd06562 GH20_HexA_HexB-like Be 50.2 53 0.0012 31.4 6.8 28 207-236 68-95 (348)
147 COG0399 WecE Predicted pyridox 49.5 19 0.0004 35.4 3.6 40 210-250 137-176 (374)
148 PRK04161 tagatose 1,6-diphosph 49.2 33 0.00072 33.2 5.2 59 168-231 107-166 (329)
149 PF04273 DUF442: Putative phos 48.5 14 0.0003 29.9 2.2 18 168-185 14-31 (110)
150 TIGR03849 arch_ComA phosphosul 47.7 48 0.001 30.6 5.8 49 171-231 74-122 (237)
151 PRK11858 aksA trans-homoaconit 47.5 26 0.00056 34.0 4.3 59 170-229 77-136 (378)
152 PF01212 Beta_elim_lyase: Beta 47.5 16 0.00034 34.2 2.7 59 167-230 104-166 (290)
153 TIGR01232 lacD tagatose 1,6-di 47.2 33 0.00071 33.2 4.8 56 171-231 109-165 (325)
154 PLN03244 alpha-amylase; Provis 47.2 18 0.0004 39.0 3.4 24 206-229 438-461 (872)
155 PRK06425 histidinol-phosphate 47.1 50 0.0011 30.6 6.0 55 176-230 95-163 (332)
156 TIGR02536 eut_hyp ethanolamine 47.1 36 0.00078 30.7 4.8 47 164-227 160-206 (207)
157 TIGR03235 DNA_S_dndA cysteine 46.4 30 0.00066 32.0 4.4 57 175-231 106-177 (353)
158 TIGR02660 nifV_homocitr homoci 45.6 25 0.00053 33.9 3.8 59 170-229 74-133 (365)
159 PRK09856 fructoselysine 3-epim 44.7 42 0.00091 30.0 4.9 58 172-231 94-151 (275)
160 TIGR01212 radical SAM protein, 44.3 29 0.00064 32.4 4.0 67 166-235 118-189 (302)
161 cd06565 GH20_GcnA-like Glycosy 44.3 74 0.0016 29.8 6.7 56 173-231 22-82 (301)
162 cd06564 GH20_DspB_LnbB-like Gl 44.3 52 0.0011 31.0 5.7 28 207-236 80-107 (326)
163 cd07943 DRE_TIM_HOA 4-hydroxy- 44.1 74 0.0016 28.9 6.5 46 170-229 87-132 (263)
164 PF07555 NAGidase: beta-N-acet 44.0 45 0.00097 31.8 5.2 55 171-231 18-78 (306)
165 PRK12399 tagatose 1,6-diphosph 43.9 47 0.001 32.1 5.3 57 170-231 107-164 (324)
166 cd07945 DRE_TIM_CMS Leptospira 43.7 28 0.00061 32.4 3.7 59 171-231 77-137 (280)
167 cd00019 AP2Ec AP endonuclease 43.2 28 0.00061 31.4 3.6 57 172-231 89-145 (279)
168 TIGR03402 FeS_nifS cysteine de 42.8 43 0.00094 31.3 4.9 30 206-236 150-179 (379)
169 PRK09389 (R)-citramalate synth 42.2 33 0.00071 34.6 4.2 61 170-231 75-136 (488)
170 PF02679 ComA: (2R)-phospho-3- 42.2 46 0.00099 30.9 4.8 50 170-231 86-135 (244)
171 PLN02746 hydroxymethylglutaryl 41.9 35 0.00077 33.0 4.2 60 170-230 123-183 (347)
172 COG0535 Predicted Fe-S oxidore 41.8 91 0.002 28.4 6.8 60 167-229 104-165 (347)
173 PF01791 DeoC: DeoC/LacD famil 41.6 24 0.00053 31.4 2.9 53 171-228 79-131 (236)
174 PF01041 DegT_DnrJ_EryC1: DegT 41.0 26 0.00057 33.0 3.2 39 207-246 125-163 (363)
175 PRK00278 trpC indole-3-glycero 40.7 1E+02 0.0022 28.3 6.8 24 208-231 146-169 (260)
176 PRK06256 biotin synthase; Vali 40.7 34 0.00074 32.0 3.9 57 168-228 149-206 (336)
177 PF10566 Glyco_hydro_97: Glyco 40.2 80 0.0017 29.7 6.2 60 174-234 38-97 (273)
178 PF00155 Aminotran_1_2: Aminot 40.1 31 0.00066 31.8 3.4 25 207-231 166-190 (363)
179 COG3934 Endo-beta-mannanase [C 39.9 24 0.00053 36.1 2.8 68 159-231 17-89 (587)
180 PLN02607 1-aminocyclopropane-1 39.4 38 0.00083 33.3 4.1 25 207-231 218-242 (447)
181 PRK09440 avtA valine--pyruvate 39.4 30 0.00066 32.9 3.3 25 207-231 197-221 (416)
182 PRK07807 inosine 5-monophospha 39.3 96 0.0021 31.3 7.0 63 169-231 277-339 (479)
183 PF00728 Glyco_hydro_20: Glyco 39.2 52 0.0011 30.6 4.8 63 173-237 23-99 (351)
184 PF02677 DUF208: Uncharacteriz 38.8 55 0.0012 28.9 4.6 48 174-229 15-62 (176)
185 PRK12858 tagatose 1,6-diphosph 38.7 57 0.0012 31.5 5.0 51 174-229 112-163 (340)
186 COG0635 HemN Coproporphyrinoge 38.7 37 0.00079 33.5 3.8 66 167-235 133-200 (416)
187 PRK05093 argD bifunctional N-s 38.6 29 0.00063 33.1 3.1 23 207-229 203-225 (403)
188 COG1306 Uncharacterized conser 38.6 45 0.00097 32.5 4.2 57 171-228 80-143 (400)
189 TIGR01302 IMP_dehydrog inosine 38.4 1.1E+02 0.0024 30.3 7.2 60 167-228 272-333 (450)
190 cd07941 DRE_TIM_LeuA3 Desulfob 38.3 48 0.001 30.5 4.3 56 171-228 81-138 (273)
191 PF08915 tRNA-Thr_ED: Archaea- 38.2 17 0.00038 30.9 1.3 33 154-195 90-122 (138)
192 TIGR02666 moaA molybdenum cofa 38.2 73 0.0016 29.8 5.6 58 171-231 102-162 (334)
193 PRK04302 triosephosphate isome 38.0 1.1E+02 0.0025 27.0 6.6 52 168-231 72-123 (223)
194 PF04601 DUF569: Protein of un 37.9 1.5E+02 0.0032 25.4 6.9 58 52-111 10-67 (142)
195 cd01299 Met_dep_hydrolase_A Me 37.6 1.3E+02 0.0029 27.6 7.2 57 171-228 123-179 (342)
196 cd06570 GH20_chitobiase-like_1 37.6 1.5E+02 0.0032 28.2 7.6 60 174-237 24-94 (311)
197 PF14701 hDGE_amylase: glucano 37.3 1E+02 0.0022 30.9 6.6 61 171-231 25-99 (423)
198 PF00563 EAL: EAL domain; Int 37.1 46 0.00099 28.4 3.8 51 171-228 159-209 (236)
199 COG1441 MenC O-succinylbenzoat 36.7 31 0.00068 32.4 2.8 51 165-228 213-263 (321)
200 PRK14012 cysteine desulfurase; 36.4 79 0.0017 30.1 5.6 61 175-236 112-187 (404)
201 COG3280 TreY Maltooligosyl tre 36.3 59 0.0013 35.1 5.0 67 174-242 25-104 (889)
202 cd00958 DhnA Class I fructose- 36.0 41 0.00088 29.8 3.4 51 173-231 81-131 (235)
203 cd00609 AAT_like Aspartate ami 35.8 35 0.00077 30.5 3.0 25 207-231 150-174 (350)
204 cd01335 Radical_SAM Radical SA 35.8 1.3E+02 0.0028 24.1 6.1 61 170-231 87-147 (204)
205 PF02937 COX6C: Cytochrome c o 35.8 33 0.00071 26.1 2.4 25 158-182 44-68 (73)
206 PLN02450 1-aminocyclopropane-1 35.6 35 0.00077 33.7 3.2 25 207-231 209-233 (468)
207 PF07454 SpoIIP: Stage II spor 35.4 81 0.0018 29.5 5.4 49 175-231 118-168 (268)
208 PRK13758 anaerobic sulfatase-m 35.4 1E+02 0.0022 29.1 6.2 58 167-227 102-162 (370)
209 PRK08175 aminotransferase; Val 35.3 36 0.00078 32.3 3.1 24 207-230 182-205 (395)
210 cd00617 Tnase_like Tryptophana 35.1 37 0.00081 33.6 3.3 25 207-231 171-195 (431)
211 PRK00125 pyrF orotidine 5'-pho 35.1 40 0.00088 31.6 3.3 25 207-231 71-95 (278)
212 smart00633 Glyco_10 Glycosyl h 34.8 44 0.00094 30.2 3.4 23 207-231 14-36 (254)
213 PF05270 AbfB: Alpha-L-arabino 34.7 1.7E+02 0.0036 24.9 6.7 58 57-116 10-73 (142)
214 cd00927 Cyt_c_Oxidase_VIc Cyto 34.5 43 0.00093 25.4 2.8 24 159-182 43-66 (70)
215 smart00052 EAL Putative diguan 34.5 1E+02 0.0022 26.3 5.5 52 171-228 158-209 (241)
216 TIGR02867 spore_II_P stage II 34.4 88 0.0019 28.0 5.2 50 175-232 41-92 (196)
217 PRK12331 oxaloacetate decarbox 34.4 94 0.002 31.1 6.0 47 169-229 97-143 (448)
218 PRK13361 molybdenum cofactor b 34.3 1.1E+02 0.0023 28.8 6.1 54 172-228 105-160 (329)
219 PRK13237 tyrosine phenol-lyase 34.3 38 0.00082 34.2 3.2 28 207-235 196-223 (460)
220 PRK05942 aspartate aminotransf 34.2 37 0.00081 32.2 3.0 24 207-230 188-211 (394)
221 PRK13745 anaerobic sulfatase-m 34.0 1E+02 0.0022 30.0 6.0 58 167-227 111-171 (412)
222 COG1167 ARO8 Transcriptional r 34.0 1.1E+02 0.0023 30.4 6.3 57 174-230 193-268 (459)
223 COG2108 Uncharacterized conser 33.9 1.2E+02 0.0027 29.6 6.4 59 167-237 120-178 (353)
224 PLN02389 biotin synthase 33.8 85 0.0018 30.7 5.4 55 168-226 175-230 (379)
225 TIGR03539 DapC_actino succinyl 33.6 38 0.00082 31.7 2.9 25 207-231 160-184 (357)
226 PRK07681 aspartate aminotransf 33.5 39 0.00085 32.1 3.1 25 207-231 184-208 (399)
227 PRK07865 N-succinyldiaminopime 33.4 42 0.00091 31.3 3.2 25 207-231 166-190 (364)
228 PRK01278 argD acetylornithine 33.2 41 0.00088 31.8 3.1 23 207-229 194-216 (389)
229 TIGR01303 IMP_DH_rel_1 IMP deh 33.1 1.7E+02 0.0037 29.6 7.6 61 168-228 274-334 (475)
230 TIGR03573 WbuX N-acetyl sugar 33.1 46 0.00099 31.8 3.4 63 169-231 97-169 (343)
231 TIGR03128 RuMP_HxlA 3-hexulose 32.8 49 0.0011 28.5 3.3 44 173-231 68-111 (206)
232 PLN02368 alanine transaminase 32.6 44 0.00095 32.6 3.3 23 207-229 228-250 (407)
233 TIGR02006 IscS cysteine desulf 32.4 65 0.0014 30.7 4.3 29 206-235 156-184 (402)
234 PF13200 DUF4015: Putative gly 32.4 78 0.0017 30.4 4.8 60 171-230 16-82 (316)
235 PRK05957 aspartate aminotransf 32.3 44 0.00096 31.7 3.2 25 207-231 178-202 (389)
236 cd07940 DRE_TIM_IPMS 2-isoprop 32.2 53 0.0011 30.0 3.6 57 170-228 71-133 (268)
237 PRK08247 cystathionine gamma-s 32.2 57 0.0012 31.0 3.9 53 177-231 111-175 (366)
238 COG1692 Calcineurin-like phosp 32.2 75 0.0016 29.9 4.5 28 204-231 125-152 (266)
239 PRK07590 L,L-diaminopimelate a 32.0 42 0.0009 32.1 3.0 23 207-229 194-216 (409)
240 PF03659 Glyco_hydro_71: Glyco 31.9 1.5E+02 0.0033 29.1 6.8 50 171-231 20-71 (386)
241 PF15632 ATPgrasp_Ter: ATP-gra 31.8 50 0.0011 31.8 3.5 29 201-231 47-75 (329)
242 TIGR03540 DapC_direct LL-diami 31.7 42 0.00092 31.5 2.9 25 207-231 182-206 (383)
243 PRK09147 succinyldiaminopimela 31.4 44 0.00096 31.6 3.0 24 207-230 184-207 (396)
244 PLN02376 1-aminocyclopropane-1 31.3 46 0.001 33.3 3.3 24 207-230 217-240 (496)
245 TIGR01140 L_thr_O3P_dcar L-thr 31.3 46 0.00099 30.8 3.0 25 207-231 143-167 (330)
246 PRK08354 putative aminotransfe 31.3 44 0.00095 30.6 2.9 25 207-231 135-159 (311)
247 PF00682 HMGL-like: HMGL-like 31.2 49 0.0011 29.2 3.1 60 169-229 64-128 (237)
248 PRK08068 transaminase; Reviewe 31.2 44 0.00096 31.5 3.0 25 207-231 185-209 (389)
249 smart00518 AP2Ec AP endonuclea 31.1 2E+02 0.0043 25.6 7.1 60 168-231 41-105 (273)
250 PRK07550 hypothetical protein; 31.0 47 0.001 31.3 3.1 25 207-231 181-205 (386)
251 PRK08960 hypothetical protein; 30.8 49 0.0011 31.2 3.2 23 207-229 183-205 (387)
252 cd00610 OAT_like Acetyl ornith 30.8 47 0.001 31.2 3.1 25 207-231 210-234 (413)
253 PRK09265 aminotransferase AlaT 30.8 49 0.0011 31.5 3.2 24 207-230 186-209 (404)
254 PRK13398 3-deoxy-7-phosphohept 30.7 1.8E+02 0.004 26.9 6.9 53 174-231 47-100 (266)
255 PRK08636 aspartate aminotransf 30.7 48 0.001 31.6 3.2 25 207-231 193-217 (403)
256 PLN00175 aminotransferase fami 30.7 48 0.001 32.0 3.2 25 207-231 205-229 (413)
257 PRK07366 succinyldiaminopimela 30.7 46 0.001 31.4 3.0 24 207-230 183-206 (388)
258 PRK12595 bifunctional 3-deoxy- 30.6 1.9E+02 0.0041 28.1 7.2 52 174-231 138-191 (360)
259 TIGR02618 tyr_phenol_ly tyrosi 30.5 48 0.001 33.4 3.2 25 207-231 189-213 (450)
260 cd06454 KBL_like KBL_like; thi 30.5 34 0.00073 31.1 2.0 26 206-231 146-171 (349)
261 PRK09148 aminotransferase; Val 30.4 47 0.001 31.8 3.1 25 207-231 183-207 (405)
262 PRK06358 threonine-phosphate d 30.2 51 0.0011 30.9 3.2 23 207-229 159-181 (354)
263 PRK05839 hypothetical protein; 30.1 48 0.001 31.3 3.0 54 177-230 126-196 (374)
264 PRK06348 aspartate aminotransf 30.1 50 0.0011 31.2 3.1 25 207-231 180-204 (384)
265 PRK03244 argD acetylornithine 30.1 49 0.0011 31.3 3.1 23 207-229 202-224 (398)
266 PRK05096 guanosine 5'-monophos 29.9 1.9E+02 0.004 28.4 6.9 60 169-228 160-219 (346)
267 PRK06108 aspartate aminotransf 29.9 51 0.0011 30.7 3.1 24 207-230 176-199 (382)
268 cd06522 GH25_AtlA-like AtlA is 29.9 1E+02 0.0022 26.7 4.9 25 207-231 72-100 (192)
269 COG2049 DUR1 Allophanate hydro 29.7 54 0.0012 30.1 3.1 69 156-246 63-140 (223)
270 cd00308 enolase_like Enolase-s 29.7 1.9E+02 0.0042 25.3 6.7 25 205-231 179-203 (229)
271 PRK06939 2-amino-3-ketobutyrat 29.5 34 0.00074 31.8 1.9 26 206-231 188-213 (397)
272 PRK09856 fructoselysine 3-epim 29.5 1.6E+02 0.0034 26.3 6.1 53 168-227 13-65 (275)
273 PRK07309 aromatic amino acid a 29.4 53 0.0012 31.1 3.2 25 207-231 184-208 (391)
274 PLN02721 threonine aldolase 29.4 53 0.0012 30.0 3.1 24 207-230 156-179 (353)
275 COG3623 SgaU Putative L-xylulo 29.3 31 0.00068 32.4 1.5 22 205-226 92-113 (287)
276 TIGR01244 conserved hypothetic 28.8 49 0.0011 27.2 2.5 19 167-185 13-31 (135)
277 PRK06207 aspartate aminotransf 28.8 56 0.0012 31.3 3.2 25 207-231 196-220 (405)
278 PRK02627 acetylornithine amino 28.7 54 0.0012 30.7 3.1 23 207-229 201-223 (396)
279 TIGR03538 DapC_gpp succinyldia 28.7 46 0.001 31.5 2.7 25 207-231 183-207 (393)
280 COG5016 Pyruvate/oxaloacetate 28.7 88 0.0019 31.6 4.6 53 163-229 93-145 (472)
281 PRK02936 argD acetylornithine 28.7 54 0.0012 30.7 3.1 23 207-229 186-208 (377)
282 PRK12381 bifunctional succinyl 28.6 50 0.0011 31.7 2.9 23 207-229 202-224 (406)
283 PLN00145 tyrosine/nicotianamin 28.5 54 0.0012 31.9 3.1 25 207-231 208-232 (430)
284 PRK08912 hypothetical protein; 28.5 50 0.0011 31.1 2.8 25 207-231 177-201 (387)
285 PRK00164 moaA molybdenum cofac 28.4 1.2E+02 0.0027 28.2 5.4 57 172-231 109-167 (331)
286 PF13899 Thioredoxin_7: Thiore 28.4 45 0.00098 24.5 2.1 22 210-231 5-26 (82)
287 TIGR02326 transamin_PhnW 2-ami 28.4 1E+02 0.0022 28.7 4.8 30 206-236 143-172 (363)
288 PRK09082 methionine aminotrans 28.1 52 0.0011 31.1 2.9 25 207-231 181-205 (386)
289 PRK07324 transaminase; Validat 28.1 56 0.0012 30.9 3.1 24 207-230 171-194 (373)
290 PRK13238 tnaA tryptophanase/L- 28.0 58 0.0012 32.4 3.3 23 207-229 196-218 (460)
291 PRK08056 threonine-phosphate d 28.0 54 0.0012 30.6 3.0 24 207-230 160-183 (356)
292 PLN00143 tyrosine/nicotianamin 27.8 60 0.0013 31.1 3.3 25 207-231 188-212 (409)
293 TIGR03542 DAPAT_plant LL-diami 27.7 57 0.0012 31.0 3.1 25 207-231 191-215 (402)
294 cd07947 DRE_TIM_Re_CS Clostrid 27.7 81 0.0017 29.5 4.0 62 168-230 74-136 (279)
295 PTZ00314 inosine-5'-monophosph 27.6 2E+02 0.0043 29.2 7.0 73 157-230 272-352 (495)
296 PTZ00377 alanine aminotransfer 27.6 58 0.0013 32.1 3.2 23 207-229 236-258 (481)
297 PRK06225 aspartate aminotransf 27.6 60 0.0013 30.5 3.2 23 207-229 175-197 (380)
298 PRK07777 aminotransferase; Val 27.6 60 0.0013 30.5 3.2 25 207-231 177-201 (387)
299 PF15647 Tox-REase-3: Restrict 27.5 47 0.001 27.1 2.1 20 210-229 88-107 (109)
300 PRK05939 hypothetical protein; 27.3 87 0.0019 30.4 4.3 61 175-238 104-177 (397)
301 PRK14455 ribosomal RNA large s 27.3 1.8E+02 0.004 28.1 6.5 27 202-228 306-332 (356)
302 PLN02187 rooty/superroot1 27.1 58 0.0013 32.1 3.1 24 207-230 222-245 (462)
303 PRK09257 aromatic amino acid a 27.1 62 0.0013 30.7 3.2 25 207-231 190-214 (396)
304 PRK10076 pyruvate formate lyas 26.9 2.2E+02 0.0047 25.5 6.5 21 207-227 191-211 (213)
305 PF01261 AP_endonuc_2: Xylose 26.8 88 0.0019 25.9 3.8 55 175-231 34-92 (213)
306 PRK09276 LL-diaminopimelate am 26.7 61 0.0013 30.4 3.1 25 207-231 184-208 (385)
307 PF03851 UvdE: UV-endonuclease 26.7 37 0.00081 31.9 1.6 21 211-231 192-212 (275)
308 PRK08117 4-aminobutyrate amino 26.6 60 0.0013 31.5 3.1 24 207-230 226-249 (433)
309 TIGR01324 cysta_beta_ly_B cyst 26.3 90 0.002 30.1 4.2 33 206-238 149-181 (377)
310 TIGR02617 tnaA_trp_ase tryptop 26.2 67 0.0015 32.6 3.4 56 168-230 166-225 (467)
311 COG0641 AslB Arylsulfatase reg 26.2 2.1E+02 0.0046 28.0 6.7 54 168-224 101-157 (378)
312 PF14542 Acetyltransf_CG: GCN5 26.2 74 0.0016 23.8 2.9 21 207-227 40-60 (78)
313 PRK00854 rocD ornithine--oxo-a 26.1 63 0.0014 30.6 3.1 24 208-231 207-230 (401)
314 PRK06855 aminotransferase; Val 26.1 66 0.0014 31.2 3.2 24 207-230 189-212 (433)
315 TIGR01264 tyr_amTase_E tyrosin 26.1 68 0.0015 30.4 3.3 25 207-231 186-210 (401)
316 TIGR03537 DapC succinyldiamino 26.1 63 0.0014 30.0 3.0 25 207-231 154-178 (350)
317 PLN00144 acetylornithine trans 26.0 63 0.0014 30.9 3.1 22 208-229 187-208 (382)
318 PTZ00433 tyrosine aminotransfe 26.0 66 0.0014 30.8 3.2 25 207-231 195-219 (412)
319 KOG0283 WD40 repeat-containing 25.9 54 0.0012 34.9 2.7 29 35-64 385-414 (712)
320 PRK07337 aminotransferase; Val 25.9 68 0.0015 30.2 3.2 23 207-229 181-203 (388)
321 PLN02651 cysteine desulfurase 25.9 1.1E+02 0.0024 28.5 4.7 60 175-235 106-180 (364)
322 TIGR02127 pyrF_sub2 orotidine 25.7 75 0.0016 29.5 3.4 24 207-230 71-94 (261)
323 PF00202 Aminotran_3: Aminotra 25.6 56 0.0012 30.8 2.6 25 207-231 196-220 (339)
324 PRK10874 cysteine sulfinate de 25.5 88 0.0019 29.5 3.9 57 178-235 131-202 (401)
325 PRK06290 aspartate aminotransf 25.3 61 0.0013 31.3 2.9 25 207-231 197-221 (410)
326 TIGR00858 bioF 8-amino-7-oxono 25.3 47 0.001 30.2 2.0 25 207-231 161-185 (360)
327 cd01948 EAL EAL domain. This d 25.2 1.5E+02 0.0033 25.1 5.1 53 170-228 156-208 (240)
328 cd06568 GH20_SpHex_like A subg 25.2 2.3E+02 0.0051 26.9 6.7 27 207-235 73-99 (329)
329 TIGR02351 thiH thiazole biosyn 25.1 96 0.0021 29.8 4.2 58 168-228 159-221 (366)
330 COG0520 csdA Selenocysteine ly 25.1 1.2E+02 0.0025 29.9 4.8 58 174-231 128-201 (405)
331 TIGR01265 tyr_nico_aTase tyros 25.1 71 0.0015 30.4 3.3 25 207-231 187-211 (403)
332 cd06502 TA_like Low-specificit 25.0 67 0.0015 29.1 3.0 23 207-229 144-166 (338)
333 PRK04073 rocD ornithine--oxo-a 24.9 68 0.0015 30.5 3.1 25 207-231 205-229 (396)
334 PRK09282 pyruvate carboxylase 24.9 1.7E+02 0.0037 30.4 6.1 52 164-229 92-143 (592)
335 PRK11706 TDP-4-oxo-6-deoxy-D-g 24.8 89 0.0019 29.6 3.8 30 206-236 130-159 (375)
336 PRK07568 aspartate aminotransf 24.7 72 0.0016 30.0 3.2 25 207-231 180-204 (397)
337 COG0821 gcpE 1-hydroxy-2-methy 24.6 2E+02 0.0043 28.3 6.0 45 171-231 39-83 (361)
338 PRK09264 diaminobutyrate--2-ox 24.6 69 0.0015 31.1 3.1 23 207-229 217-239 (425)
339 PRK07682 hypothetical protein; 24.6 67 0.0014 30.1 2.9 25 207-231 172-196 (378)
340 cd00331 IGPS Indole-3-glycerol 24.6 2.9E+02 0.0062 24.0 6.8 50 168-231 80-130 (217)
341 PLN02656 tyrosine transaminase 24.4 75 0.0016 30.4 3.3 25 207-231 187-211 (409)
342 PRK08363 alanine aminotransfer 24.3 61 0.0013 30.7 2.6 24 207-230 184-207 (398)
343 cd00615 Orn_deC_like Ornithine 24.3 59 0.0013 29.6 2.4 25 206-230 167-191 (294)
344 cd04726 KGPDC_HPS 3-Keto-L-gul 24.2 85 0.0018 26.7 3.3 44 173-231 69-112 (202)
345 PLN02483 serine palmitoyltrans 23.9 54 0.0012 32.7 2.3 26 206-231 254-279 (489)
346 PRK08361 aspartate aminotransf 23.9 75 0.0016 30.0 3.1 25 207-231 184-208 (391)
347 KOG0256 1-aminocyclopropane-1- 23.8 92 0.002 31.4 3.7 24 207-230 244-267 (471)
348 PRK05764 aspartate aminotransf 23.8 77 0.0017 29.7 3.2 24 207-230 182-205 (393)
349 PTZ00125 ornithine aminotransf 23.8 75 0.0016 30.0 3.1 23 207-229 197-219 (400)
350 COG2896 MoaA Molybdenum cofact 23.7 1.3E+02 0.0027 29.2 4.6 58 171-235 101-163 (322)
351 KOG3770 Acid sphingomyelinase 23.6 2.1E+02 0.0045 29.9 6.3 73 159-236 284-371 (577)
352 PRK07998 gatY putative fructos 23.6 2.8E+02 0.006 26.2 6.8 59 169-238 85-143 (283)
353 PRK12414 putative aminotransfe 23.6 68 0.0015 30.3 2.8 25 207-231 180-204 (384)
354 PRK15407 lipopolysaccharide bi 23.6 83 0.0018 31.0 3.4 32 206-238 170-201 (438)
355 PRK09240 thiH thiamine biosynt 23.5 1E+02 0.0022 29.7 4.0 55 168-225 160-219 (371)
356 PF04898 Glu_syn_central: Glut 23.5 2.4E+02 0.0053 26.8 6.4 58 166-227 100-160 (287)
357 PLN02231 alanine transaminase 23.4 78 0.0017 32.1 3.3 23 207-229 289-311 (534)
358 PRK13355 bifunctional HTH-doma 23.2 73 0.0016 31.7 3.0 24 207-230 299-322 (517)
359 KOG3962 Predicted actin-bundli 23.2 4.7E+02 0.01 24.4 7.9 72 52-126 50-127 (246)
360 TIGR00707 argD acetylornithine 23.1 80 0.0017 29.3 3.1 25 207-231 189-213 (379)
361 cd01494 AAT_I Aspartate aminot 23.0 78 0.0017 24.9 2.6 21 211-231 111-131 (170)
362 PRK07683 aminotransferase A; V 22.9 80 0.0017 29.9 3.1 25 207-231 179-203 (387)
363 cd06563 GH20_chitobiase-like T 22.7 2.8E+02 0.006 26.5 6.8 28 207-236 84-111 (357)
364 PRK05826 pyruvate kinase; Prov 22.7 1.8E+02 0.004 29.3 5.7 52 170-231 18-71 (465)
365 cd03319 L-Ala-DL-Glu_epimerase 22.7 2.6E+02 0.0056 25.8 6.4 27 204-230 261-287 (316)
366 cd06232 Peptidase_M14-like_5 P 22.5 1.4E+02 0.0031 27.7 4.5 42 214-256 125-167 (240)
367 COG1168 MalY Bifunctional PLP- 22.5 78 0.0017 31.4 2.9 25 207-231 176-201 (388)
368 PTZ00376 aspartate aminotransf 22.5 82 0.0018 30.1 3.1 25 207-231 194-218 (404)
369 TIGR01927 menC_gamma/gm+ o-suc 22.5 2.5E+02 0.0054 26.3 6.3 25 204-228 239-263 (307)
370 PF00224 PK: Pyruvate kinase, 22.3 1.2E+02 0.0027 29.0 4.3 52 170-231 16-69 (348)
371 cd03318 MLE Muconate Lactonizi 22.2 2.2E+02 0.0047 27.0 5.9 27 202-228 270-296 (365)
372 PRK08088 4-aminobutyrate amino 22.2 82 0.0018 30.5 3.1 23 207-229 218-240 (425)
373 PLN02624 ornithine-delta-amino 22.2 81 0.0018 31.3 3.1 23 207-229 243-265 (474)
374 TIGR03403 nifS_epsilon cystein 22.2 1.4E+02 0.003 28.0 4.5 30 206-236 154-183 (382)
375 cd02958 UAS UAS family; UAS is 22.1 86 0.0019 24.3 2.7 21 211-231 6-26 (114)
376 cd00288 Pyruvate_Kinase Pyruva 22.1 2E+02 0.0042 29.2 5.8 52 170-231 16-69 (480)
377 cd06569 GH20_Sm-chitobiase-lik 22.0 2.8E+02 0.0061 27.6 6.8 28 207-236 95-122 (445)
378 cd00019 AP2Ec AP endonuclease 21.9 3.6E+02 0.0078 24.1 7.0 25 206-231 82-106 (279)
379 PRK07709 fructose-bisphosphate 21.8 3.1E+02 0.0067 25.9 6.7 64 164-238 83-146 (285)
380 TIGR00700 GABAtrnsam 4-aminobu 21.8 86 0.0019 30.3 3.1 23 207-229 216-238 (420)
381 TIGR03246 arg_catab_astC succi 21.8 84 0.0018 30.1 3.0 23 207-229 198-220 (397)
382 cd00614 CGS_like CGS_like: Cys 21.7 78 0.0017 30.0 2.8 25 207-231 140-164 (369)
383 PRK05567 inosine 5'-monophosph 21.7 2.6E+02 0.0057 28.0 6.6 61 168-228 277-337 (486)
384 smart00791 Agglutinin Amaranth 21.7 4.1E+02 0.0089 22.8 6.7 57 47-109 48-110 (139)
385 COG3422 Uncharacterized conser 21.5 1.2E+02 0.0025 22.4 3.0 25 85-109 4-28 (59)
386 cd04724 Tryptophan_synthase_al 21.5 2.9E+02 0.0062 24.9 6.3 42 171-228 94-135 (242)
387 KOG2499 Beta-N-acetylhexosamin 21.5 2.7E+02 0.0059 28.7 6.5 32 207-240 248-279 (542)
388 PRK13210 putative L-xylulose 5 21.5 2.7E+02 0.0059 24.7 6.2 51 171-226 19-69 (284)
389 PRK02948 cysteine desulfurase; 21.5 1.9E+02 0.0042 26.9 5.3 57 175-231 106-177 (381)
390 TIGR03551 F420_cofH 7,8-dideme 21.5 99 0.0021 29.3 3.4 55 168-225 138-195 (343)
391 PLN02461 Probable pyruvate kin 21.4 2E+02 0.0043 29.5 5.7 52 170-231 35-88 (511)
392 PRK14467 ribosomal RNA large s 21.4 2.4E+02 0.0051 27.3 6.0 59 169-231 265-327 (348)
393 PRK05368 homoserine O-succinyl 21.4 1.7E+02 0.0037 27.9 5.0 55 158-226 82-139 (302)
394 PRK04612 argD acetylornithine 21.3 88 0.0019 30.4 3.1 25 207-231 206-230 (408)
395 TIGR01437 selA_rel uncharacter 21.1 83 0.0018 29.9 2.8 24 208-231 165-188 (363)
396 COG4466 Veg Uncharacterized pr 21.1 1E+02 0.0022 24.0 2.7 33 95-137 19-51 (80)
397 PRK09792 4-aminobutyrate trans 21.0 89 0.0019 30.4 3.1 23 207-229 217-239 (421)
398 TIGR01108 oadA oxaloacetate de 21.0 2.2E+02 0.0047 29.6 6.0 48 169-230 92-139 (582)
399 TIGR02017 hutG_amidohyd N-form 21.0 1.1E+02 0.0024 28.3 3.5 25 210-235 126-151 (263)
400 cd00616 AHBA_syn 3-amino-5-hyd 20.9 1.1E+02 0.0024 27.9 3.5 29 207-236 118-146 (352)
401 cd06453 SufS_like Cysteine des 20.9 83 0.0018 29.1 2.7 26 206-231 153-178 (373)
402 COG1649 Uncharacterized protei 20.9 1.9E+02 0.004 29.0 5.3 56 171-226 67-132 (418)
403 COG2100 Predicted Fe-S oxidore 20.8 3.3E+02 0.0071 27.0 6.7 66 167-236 200-268 (414)
404 COG1082 IolE Sugar phosphate i 20.8 3.5E+02 0.0076 23.7 6.6 63 173-237 89-153 (274)
405 COG0436 Aspartate/tyrosine/aro 20.7 90 0.0019 30.3 3.0 65 160-229 118-203 (393)
406 PF11871 DUF3391: Domain of un 20.7 1E+02 0.0022 24.4 2.9 20 170-189 37-56 (128)
407 PF08373 RAP: RAP domain; Int 20.5 57 0.0012 22.5 1.2 19 175-193 25-43 (58)
408 TIGR00629 uvde UV damage endon 20.5 81 0.0017 30.3 2.6 21 211-231 201-221 (312)
409 PRK06777 4-aminobutyrate amino 20.5 94 0.002 30.2 3.1 23 207-229 217-239 (421)
410 TIGR00713 hemL glutamate-1-sem 20.5 93 0.002 29.8 3.0 23 207-229 214-236 (423)
411 PRK06918 4-aminobutyrate amino 20.4 94 0.002 30.5 3.1 23 207-229 238-260 (451)
412 TIGR01858 tag_bisphos_ald clas 20.3 2.9E+02 0.0062 26.0 6.2 65 164-239 78-142 (282)
413 PLN02397 aspartate transaminas 20.3 99 0.0021 30.0 3.2 24 207-230 212-235 (423)
414 TIGR03301 PhnW-AepZ 2-aminoeth 20.2 99 0.0022 28.1 3.1 25 206-230 139-163 (355)
415 TIGR01885 Orn_aminotrans ornit 20.1 98 0.0021 29.4 3.1 22 208-229 206-227 (401)
416 COG2870 RfaE ADP-heptose synth 20.1 87 0.0019 31.6 2.7 29 203-231 152-180 (467)
No 1
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.3e-20 Score=178.05 Aligned_cols=136 Identities=25% Similarity=0.417 Sum_probs=108.7
Q ss_pred CCcCCcCcccc-c--ccccccccchhhhhhccCCCChhHHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC-
Q 024471 124 TSWGDDDPSVF-E--MTIAGRMQGEFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP- 199 (267)
Q Consensus 124 e~W~~i~Ps~F-~--~~~~~~~~dE~tl~~~~G~~~a~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~- 199 (267)
+.| +++..| . ......+.++..++..+|...+...++.||.+++|++||.+|+++|||+||||++||.+ ...+
T Consensus 28 ~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~ 104 (407)
T COG2730 28 EPT--IADGLFKTDPKESPGQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDG 104 (407)
T ss_pred eee--ecCceeecCCCCCcceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCC
Confidence 666 667655 1 12223678899999999988899999999999999999999999999999999999987 4433
Q ss_pred CCCCcc--chHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCCCCC---Cccccccccc
Q 024471 200 PAPYVG--GSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVHNTPKYGV---PKPMMLWSQH 264 (267)
Q Consensus 200 ~~P~~~--g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~~~hsG~~~~~~~~~~---~~~~~~W~q~ 264 (267)
.+|++. .++++||++|+||+++||+|+||+|+ +||++++.++||....... .+ ....++|+++
T Consensus 105 ~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~-~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~i 172 (407)
T COG2730 105 DNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHG-YPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFI 172 (407)
T ss_pred CCCCeecchHHHHHHHHHHHHHhcCeeEEEEecc-cCCCCCCcCcccccccccc-cchhHHHHHHHHHHH
Confidence 468876 47779999999999999999999999 9999999999996433322 11 2335566554
No 2
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.47 E-value=7.4e-13 Score=106.20 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=87.6
Q ss_pred ccceEEE-----EEEeehhhhhhhccCCCcceEeEEeeCCeEEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEe
Q 024471 16 LNRLLSA-----NIFVQRTVEAQLLLQTGHLHQLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVR 90 (267)
Q Consensus 16 ~~~~~s~-----~~~~nr~~~~~~~~s~wetf~lwr~~~~~f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr 90 (267)
+++||++ .|.|||+.+ .+||+|+|...++..+.||..+++|+++++ ++.+.|++. ++..|.|+++.
T Consensus 10 ~gkyl~~~~~g~~v~a~~~~~-----~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~---~g~l~~~~~-~~~~e~F~~e~ 80 (119)
T cd00257 10 NGRYLSAEAGGDKVDANRDSL-----KGDETFTLEFDNTGKYALRSHDGKYLSADS---DGGVQLEGH-PNADCRFTLEF 80 (119)
T ss_pred CCCEEEEeccCCEEEEcCccC-----CCceEEEEEECCCCeEEEEECCCcEEEEEC---CCCEEecCC-CCCCcEEEEEE
Confidence 6899995 789999988 899999998888889999999999999986 557999998 99999999988
Q ss_pred CCCCCcceEEEcCCCceeeeeccceeeeeccCCCCc
Q 024471 91 NSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSW 126 (267)
Q Consensus 91 ~~~~~~~v~ika~nG~~lqa~~~~~vta~~~~~e~W 126 (267)
.. .+++.||+.||+||.++..+.|.++....+.|
T Consensus 81 ~~--~g~~al~~~~G~yl~~~~~g~l~~~~~~~~~~ 114 (119)
T cd00257 81 HG--DGKWALRAENGRYLGGDGSGTLKASSETVGPD 114 (119)
T ss_pred CC--CCeEEEEcCCCCEEeecCCCeEEEecCCCCcc
Confidence 64 36899999999999999899999988765443
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.47 E-value=2.4e-13 Score=108.95 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=82.7
Q ss_pred EEEEeehhhhhhhccCCCcceEeEEeeCC-eEEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEE
Q 024471 22 ANIFVQRTVEAQLLLQTGHLHQLWRINET-NFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRI 100 (267)
Q Consensus 22 ~~~~~nr~~~~~~~~s~wetf~lwr~~~~-~f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~i 100 (267)
+.|.|||..+ +.||||+|+..+.+ .+.||..+++||.++. +|.|+|++++|++++.|+|+... +++.+
T Consensus 12 ~~l~an~~~~-----~~~e~f~le~~~~~~~v~lrs~~GkYls~~~---~G~v~~~~~~~~~~~~F~i~~~~---~~~~~ 80 (111)
T PF06268_consen 12 AHLNANRASL-----SDWETFQLEFDDGSYKVALRSHNGKYLSVDS---DGSVVADSETPGPDEFFEIEWHG---GKVAL 80 (111)
T ss_dssp CBEEEEESSS-----SCGGSEEEEEETTEEEEEEECTTSEEEEEET---TSEEEEEESSSSGGGCBEEEEET---TEEEE
T ss_pred CEEECChhcC-----cccEEEEEEEECCCCEEEEEcCCCCEEEEcC---CCeEEecCCCCCCCcEEEEEECC---CEEEE
Confidence 5899999988 99999999755443 2569999999999997 66899999999999999999984 88999
Q ss_pred EcCCCceeeeeccceeeeeccCCCCc
Q 024471 101 KAPNGFFLQAKTEELVTADYEGATSW 126 (267)
Q Consensus 101 ka~nG~~lqa~~~~~vta~~~~~e~W 126 (267)
+++||+||.++..+.|.|+-...+.|
T Consensus 81 ~~~nGkYl~~~~~g~l~a~~~~~~~~ 106 (111)
T PF06268_consen 81 RASNGKYLSAGPNGQLKANATSPGKD 106 (111)
T ss_dssp ECTTSCEEEEETTTEEEEEESSSSGG
T ss_pred ECCCCCEEeeCCCCeEEEcCCCCCcc
Confidence 99999999999999999988766554
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.45 E-value=7.4e-14 Score=124.10 Aligned_cols=78 Identities=31% Similarity=0.403 Sum_probs=60.4
Q ss_pred HHhhhhc-ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCC
Q 024471 161 MRKHWST-YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDL 239 (267)
Q Consensus 161 l~~Hw~t-yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~ 239 (267)
++.||.+ +++++||+.|+++|+|+|||||.|..+..+.+.-.+....+++||++|++|+++||+||||+|. .||..++
T Consensus 13 ~n~~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~-~~~w~~~ 91 (281)
T PF00150_consen 13 FNTHWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN-APGWANG 91 (281)
T ss_dssp EEETTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE-STTCSSS
T ss_pred eecccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc-Ccccccc
Confidence 3445654 3999999999999999999999986554333221234568999999999999999999999999 8776433
No 5
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=98.31 E-value=3.8e-06 Score=67.25 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=58.6
Q ss_pred EEEEEeCCeEEEeecCCCCc-eEEEccCCCCCCCceEEEeCCCCCcceEEEcCCCceeeeeccceeeeeccCCCCc
Q 024471 52 FHFRVFNKQFIGLDTNGNGI-DIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSW 126 (267)
Q Consensus 52 f~~r~~~~~f~~~~~~g~~~-~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika~nG~~lqa~~~~~vta~~~~~e~W 126 (267)
..||..+++|+++.+ ++ .|.|++..|...|+|++++.. ...|.||+.||+||.+...+.|+++.. .+.|
T Consensus 4 v~Lrs~~gkyl~~~~---~g~~v~a~~~~~~~~e~F~l~~~~--~g~v~Lrs~~G~yls~~~~g~l~~~~~-~~~~ 73 (119)
T cd00257 4 VVLRSVNGRYLSAEA---GGDKVDANRDSLKGDETFTLEFDN--TGKYALRSHDGKYLSADSDGGVQLEGH-PNAD 73 (119)
T ss_pred EEEEEcCCCEEEEec---cCCEEEEcCccCCCceEEEEEECC--CCeEEEEECCCcEEEEECCCCEEecCC-CCCC
Confidence 467877999999997 44 799999999999999999864 378999999999999998888888875 4433
No 6
>TIGR03356 BGL beta-galactosidase.
Probab=98.25 E-value=1.7e-06 Score=84.53 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++|++.|+++|+|++|++|.|-.+ .|.....+...++++.|++|+.|+++||.+||+||.
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri-~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRI-FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhc-ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 689999999999999999988755 333112455568999999999999999999999976
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.97 E-value=6.4e-06 Score=78.49 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=45.6
Q ss_pred hhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc--CCCCCC
Q 024471 164 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI--TISVTT 235 (267)
Q Consensus 164 Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL--H~~aPG 235 (267)
||..=.-++|++.|+++|||+|||..-.|...+|.++ .| .+..||++|+.|+++||+|||-+ +. +|.
T Consensus 6 ~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG-~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~-~P~ 74 (374)
T PF02449_consen 6 QWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG-QY---DFSWLDRVLDLAAKHGIKVILGTPTAA-PPA 74 (374)
T ss_dssp GS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT-B------HHHHHHHHHHHCTT-EEEEEECTTT-S-H
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCC-ee---ecHHHHHHHHHHHhccCeEEEEecccc-ccc
Confidence 4444444899999999999999997656655566443 34 68889999999999999999977 44 553
No 8
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.79 E-value=0.00012 Score=64.97 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=53.6
Q ss_pred CCCcceEeEEe-eCCeEEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEc-CCCceeeeeccc
Q 024471 37 QTGHLHQLWRI-NETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEE 114 (267)
Q Consensus 37 s~wetf~lwr~-~~~~f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika-~nG~~lqa~~~~ 114 (267)
+-.|-|-+.|| +++.|+||..+|+|++++. .|.|+|++..-++.|.|++|..+ ...-+.+ .|+.||.++...
T Consensus 25 ~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk---~G~v~a~sdAiGp~E~f~~V~~~---~~~a~~~~~~~~FLs~~~~~ 98 (191)
T PF06229_consen 25 DPRQVWVATRVPGDEKIAFKSGHGKYLSCDK---DGIVSARSDAIGPQEQFEPVFQD---GKPALFSSSNNKFLSVDEEG 98 (191)
T ss_dssp -TTT-EEEEE--SSS-EEEEETTS-BEEE-S---SSBEEE--SS--TTTBEEEE-ST---T--EEEE-TTS-BEEE-SSS
T ss_pred ChhHeEEEEEecCCCceEeeccCccEEEEcC---CCcEEEEeecCCCceEEEEEECC---CCeEEEecCCCeEEEEeccc
Confidence 56889999999 8888999999999999997 56899999999999999999987 4456666 999999998866
Q ss_pred eeeeeccC
Q 024471 115 LVTADYEG 122 (267)
Q Consensus 115 ~vta~~~~ 122 (267)
-+.++-..
T Consensus 99 ~i~a~s~~ 106 (191)
T PF06229_consen 99 DIRADSKT 106 (191)
T ss_dssp -EEE--S-
T ss_pred Ceeecccc
Confidence 67777654
No 9
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=97.76 E-value=8.5e-05 Score=59.42 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=56.8
Q ss_pred cccceEEE----EEEeehhhhhhhccCCCcceEeEEeeCCeEEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEE
Q 024471 15 SLNRLLSA----NIFVQRTVEAQLLLQTGHLHQLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEI 88 (267)
Q Consensus 15 ~~~~~~s~----~~~~nr~~~~~~~~s~wetf~lwr~~~~~f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~i 88 (267)
.+++|||+ .|+++++.. +.|++|.| +....-.-||..||+|++... .|.+.|++++|+.+|.|+.
T Consensus 43 ~~GkYls~~~~G~v~~~~~~~-----~~~~~F~i-~~~~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~elf~~ 111 (111)
T PF06268_consen 43 HNGKYLSVDSDGSVVADSETP-----GPDEFFEI-EWHGGKVALRASNGKYLSAGP---NGQLKANATSPGKDELFEY 111 (111)
T ss_dssp TTSEEEEEETTSEEEEEESSS-----SGGGCBEE-EEETTEEEEECTTSCEEEEET---TTEEEEEESSSSGGGEEEE
T ss_pred CCCCEEEEcCCCeEEecCCCC-----CCCcEEEE-EECCCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcceEEeC
Confidence 58999995 899999987 89999999 666666778889999999887 5689999999999999974
No 10
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.75 E-value=5.5e-05 Score=75.25 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=54.6
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC-CCCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI-SVTT 235 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~-~aPG 235 (267)
+||..| ++|++.|+++|+|+.|++|.|.-+.............+++-+++|+.|+++||.+||.||. .+|.
T Consensus 68 D~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 68 DFYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred chhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 455443 7899999999999999999998653221111124558999999999999999999999986 2454
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.40 E-value=0.00036 Score=69.49 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=52.9
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC-CCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~-~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.|+++|+|+.|++|.|--+. |.. .......++++-+++|+-++++||..||.||.
T Consensus 66 D~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H 132 (477)
T PRK15014 66 DFYGHY--KEDIKLFAEMGFKCFRTSIAWTRIF-PKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH 132 (477)
T ss_pred Cccccc--HHHHHHHHHcCCCEEEecccceeec-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 466443 8899999999999999999997553 321 12234558999999999999999999999965
No 12
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.35 E-value=0.0004 Score=66.37 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=37.6
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++-|+.||+.|+|.|||=| | .+|... -+ ..+++..+..+.|+++||+|+||+|-
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--w--v~P~~~-g~--~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--W--VNPYDG-GY--NDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TTT-TT--TSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCCHHHHHHhcCCCeEEEEe--c--cCCccc-cc--CCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 46778899999999999988 4 343220 11 26888888999999999999999996
No 13
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0011 Score=65.94 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred ccCCCChhHHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 151 GYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 151 ~~G~~~a~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+.+++.|.... ..| ++|++.+|++|+|+.|+.|.|--.+...........+++.-+++|+-|.++||.-+|-||
T Consensus 48 ~~~~~~a~d~Y----hrY--keDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~ 121 (460)
T COG2723 48 GDPPEEASDFY----HRY--KEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY 121 (460)
T ss_pred CCCCccccchh----hhh--HHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 34556665443 333 889999999999999999998654332122123345899999999999999999999999
Q ss_pred CCCCCCC
Q 024471 231 ISVTTSQ 237 (267)
Q Consensus 231 ~~aPG~Q 237 (267)
. -.=.+
T Consensus 122 H-fd~P~ 127 (460)
T COG2723 122 H-FDLPL 127 (460)
T ss_pred c-cCCcH
Confidence 8 44333
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.09 E-value=0.0012 Score=65.47 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=54.4
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.||++|+|+-|+.|.|--+. |....+....++++=+++|+-|+++||.-+|-||.
T Consensus 51 d~Y~ry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H 116 (469)
T PRK13511 51 DFYHRY--PEDLKLAEEFGVNGIRISIAWSRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH 116 (469)
T ss_pred chhhhh--HHHHHHHHHhCCCEEEeeccHhhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 466444 8999999999999999999987543 32223455569999999999999999999999997
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.0026 Score=60.56 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCC--CCCCCCccc--hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGG--SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~--~~~~P~~~g--~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+-|+-|+++|+|.|||-| +.+| +.+.+|-.| .++..-.+-+.|++.||||+||.|-
T Consensus 66 qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 4556778999999999988 3344 234566543 4555555567789999999999996
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.87 E-value=0.0014 Score=64.45 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=49.3
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC-CCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~-~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.||++|+|+.|+.|.|-.+ .|.+ .......++++-+++|+-++++||..||.||.
T Consensus 55 d~y~~y--~eDi~l~~~lg~~~yRfsi~W~Ri-~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H 121 (455)
T PF00232_consen 55 DHYHRY--KEDIALMKELGVNAYRFSISWSRI-FPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH 121 (455)
T ss_dssp GHHHHH--HHHHHHHHHHT-SEEEEE--HHHH-STTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred cchhhh--hHHHHHHHhhccceeeeecchhhe-eecccccccCHhHhhhhHHHHHHHHhhccceeeeeee
Confidence 455333 789999999999999999998754 3432 23444568999999999999999999999997
No 17
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.70 E-value=0.0043 Score=61.72 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++|++.|+++|+|+-|+.|.|--. -|....++...++++-+++|+-|+++||.-||-||.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI-~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H 115 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRI-FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH 115 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhc-cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC
Confidence 789999999999999999998754 333223455568999999999999999999999997
No 18
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.65 E-value=0.0046 Score=61.67 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=52.8
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC-CCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~-~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.||++|+|+-|+.|.|--+. |.. .......++++-+++|+-|+++||.-||-||.
T Consensus 64 D~Yhry--~eDi~Lm~~lG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H 130 (476)
T PRK09589 64 DFYHRY--KEDIALFAEMGFKCFRTSIAWTRIF-PQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH 130 (476)
T ss_pred cHHHhh--HHHHHHHHHcCCCEEEeccchhhcC-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 344433 7899999999999999999987543 321 11234568999999999999999999999997
No 19
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.63 E-value=0.0049 Score=61.49 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=52.7
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC-CCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~-~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.|+++|+|+-|+.|.|--+ -|.. .......++++=+++|+-+.++||..+|-||.
T Consensus 70 d~Yhry--~eDi~Lm~~lG~~aYRfSIsWsRI-~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H 136 (478)
T PRK09593 70 DMYHHY--KEDIALFAEMGFKTYRMSIAWTRI-FPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH 136 (478)
T ss_pred chHHhh--HHHHHHHHHcCCCEEEEecchhhc-ccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 355333 889999999999999999998654 3321 11234568999999999999999999999987
No 20
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=96.63 E-value=0.0024 Score=60.47 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
++-++.||++|||+|-++|.|-.. ++.++ -|.-....-|++.|+.|+++||+|||-
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~h-e~~~g-~~df~g~~dl~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLH-EPEEG-QFDFTGNRDLDRFLDLAQENGLYVILR 82 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHH-SSBTT-B---SGGG-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHhCCcceEEEecccccc-CCCCC-cccccchhhHHHHHHHHHHcCcEEEec
Confidence 567899999999999999977654 44333 243334567999999999999999984
No 21
>PLN02998 beta-glucosidase
Probab=96.55 E-value=0.0055 Score=61.48 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=53.9
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+||..| ++|++.||++|+|+-|+.|.|--+. |....++...++++-+++|+-++++||..||-||.
T Consensus 79 D~Yhry--~EDi~lmk~lG~~~YRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H 144 (497)
T PLN02998 79 DQYHKY--KEDVKLMADMGLEAYRFSISWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH 144 (497)
T ss_pred cHHHhh--HHHHHHHHHcCCCeEEeeccHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 455433 7899999999999999999987543 33223455568999999999999999999999997
No 22
>PLN02814 beta-glucosidase
Probab=96.51 E-value=0.0064 Score=61.13 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++|++.||++|+|+-|+.|.|--+. |....+....++++-+++|+-|+++||.-+|-||.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H 139 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH 139 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 7899999999999999999987543 33222445568999999999999999999999997
No 23
>PLN02849 beta-glucosidase
Probab=96.49 E-value=0.0061 Score=61.26 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++|++.||++|+|+-|+.|.|--+ -|....+....++++-+++|+-|.++||.-+|-||.
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI-~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H 141 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRL-IPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH 141 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhc-CcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC
Confidence 789999999999999999998754 333223455668999999999999999999999997
No 24
>smart00642 Aamy Alpha-amylase domain.
Probab=96.24 E-value=0.018 Score=49.63 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHhCCCCEEEeecccccc--------cCCCC---CCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIPVGWWMA--------SDPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~--------~d~~~---~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++|+++|+|+|-|+=-+-.. .++.. .+|-. |..+.|+++|+-|+++||+||+|+
T Consensus 25 l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~-Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 25 LDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRF-GTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 669999999999886543221 11111 12211 578999999999999999999998
No 25
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=96.21 E-value=0.0086 Score=53.21 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=40.0
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCC--------CCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~--------~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.+++|+++|+|+|=|+=-+-.-.....+ +|-. |..+.|+++|+.|.++||+||||+
T Consensus 9 kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 9 KLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRF-GTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp THHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTT-BHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhHHHHHcCCCceecccccccccccccccceeeecccccc-chhhhhhhhhhccccccceEEEee
Confidence 4789999999999986432210000111 2222 589999999999999999999998
No 26
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=96.15 E-value=0.011 Score=52.46 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred ccceEEE----EEEeehhhhhhhccCCCcceEeEEeeCCeEE-EEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEE
Q 024471 16 LNRLLSA----NIFVQRTVEAQLLLQTGHLHQLWRINETNFH-FRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIV 89 (267)
Q Consensus 16 ~~~~~s~----~~~~nr~~~~~~~~s~wetf~lwr~~~~~f~-~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~iv 89 (267)
..+|||+ .|+|++++. +.+|.|.+ ...+++.- |...+++|+++.. .+.|+|++.+.+..|.+.|-
T Consensus 47 ~GkYLs~Dk~G~v~a~sdAi-----Gp~E~f~~-V~~~~~~a~~~~~~~~FLs~~~---~~~i~a~s~~a~~~e~~~iR 116 (191)
T PF06229_consen 47 HGKYLSCDKDGIVSARSDAI-----GPQEQFEP-VFQDGKPALFSSSNNKFLSVDE---EGDIRADSKTAGENEMIKIR 116 (191)
T ss_dssp TS-BEEE-SSSBEEE--SS-------TTTBEEE-E-STT--EEEE-TTS-BEEE-S---SS-EEE--S---TTT--EEE
T ss_pred CccEEEEcCCCcEEEEeecC-----CCceEEEE-EECCCCeEEEecCCCeEEEEec---ccCeeeccccCCCCceEEEE
Confidence 5799996 899999999 99999999 44444433 3438999999997 44599999999999877653
No 27
>PLN00196 alpha-amylase; Provisional
Probab=95.69 E-value=0.033 Score=54.94 Aligned_cols=65 Identities=17% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCEEEeeccccccc-------CCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc---CCCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMAS-------DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TISVTTS 236 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~-------d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL---H~~aPG~ 236 (267)
.+.+.+|+++|+++|=||=.+.... +...-+|-.-|..+.|+++|+-|.++||+||+|+ |. .+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~-~~~~ 121 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR-TAEH 121 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc-cccc
Confidence 4568999999999999985332210 1111111011578999999999999999999997 66 5433
No 28
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.024 Score=58.97 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEe-ecccccccCCCCCCCCccchHHHHHHH-HHHHHHCCCcEEE
Q 024471 171 EDDFKFIAGNGLNAVRI-PVGWWMASDPTPPAPYVGGSLRALDNA-FTWAGYAFFPVPS 227 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pvgyw~~~d~~~~~P~~~g~l~~LD~a-v~wA~k~GL~VIL 227 (267)
++|++.||.+|+|+||| .|.|-. ..|..+. | .|.-+|.. ++.|.+.||+|||
T Consensus 33 ~ddl~~mk~~G~N~V~ig~faW~~-~eP~eG~-f---df~~~D~~~l~~a~~~Gl~vil 86 (673)
T COG1874 33 MDDLRKMKALGLNTVRIGYFAWNL-HEPEEGK-F---DFTWLDEIFLERAYKAGLYVIL 86 (673)
T ss_pred HHHHHHHHHhCCCeeEeeeEEeec-cCccccc-c---CcccchHHHHHHHHhcCceEEE
Confidence 88999999999999999 887654 4554432 3 23456665 9999999999999
No 29
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.13 E-value=0.041 Score=52.42 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDL 239 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~ 239 (267)
+.|+..|+++|+|+||| |-+ +|+ .. =|..+....+.||||||||-. ..++-+.
T Consensus 56 ~rDi~~l~~LgiNtIRV---Y~v--dp~-----~n-----Hd~CM~~~~~aGIYvi~Dl~~-p~~sI~r 108 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRV---YSV--DPS-----KN-----HDECMSAFADAGIYVILDLNT-PNGSINR 108 (314)
T ss_dssp HHHHHHHHHHT-SEEEE---S-----TT-----S-------HHHHHHHHHTT-EEEEES-B-TTBS--T
T ss_pred HHhHHHHHHcCCCEEEE---EEe--CCC-----CC-----HHHHHHHHHhCCCEEEEecCC-CCccccC
Confidence 67899999999999999 432 432 11 255777788899999999988 4444443
No 30
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.99 E-value=0.06 Score=55.23 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCEEEe-eccc------ccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRI-PVGW------WMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pvgy------w~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.-+++|+++|+|+|=| ||.- |-. ++. ..+|-+ |..+-|+++|+-|.++||+||||+
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY-~~~~y~~~~~~~-Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGY-QVTGYYAPTSRF-GTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33348999999999999 8732 221 211 112222 468899999999999999999996
No 31
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.87 E-value=0.061 Score=55.25 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHhCCCCEEEe-ec------ccccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRI-PV------GWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRI-Pv------gyw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++|+++|+|+|=| || +.|-. ++. ..+|-+ |..+-|+++|+.|.++||+||||+
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY-~~~~y~~i~~~~-Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGY-QLTGYFAPTSRY-GTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCC-CCcCcCcCCCCC-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 69999999999984 55 12321 111 112222 478999999999999999999996
No 32
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=94.75 E-value=0.086 Score=53.50 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCEEEeec---------ccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 172 DDFKFIAGNGLNAVRIPV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPv---------gyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.+++|+++|+++|=|+= ||+.. +-...+|-. |..+-|+++|+-|.++||+||||+
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~-d~~~id~~~-Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA-NYTAIDPTY-GTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc-cCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 347899999999997732 23321 111122332 478999999999999999999998
No 33
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.091 Score=55.01 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEe-ecccccccCCC---------CCCC---------Cc-----cchHHHHHHHH
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRI-PVGWWMASDPT---------PPAP---------YV-----GGSLRALDNAF 215 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRI-Pvgyw~~~d~~---------~~~P---------~~-----~g~l~~LD~av 215 (267)
.++.-+.....+..+++|+++|+++|.| ||-.+...... .++| |. ......|+.+|
T Consensus 192 ~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV 271 (697)
T COG1523 192 ELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMV 271 (697)
T ss_pred hhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHH
Confidence 3444444455566699999999999995 88655432110 0112 21 12588999999
Q ss_pred HHHHHCCCcEEEEc---CCCCCCCC
Q 024471 216 TWAGYAFFPVPSDI---TISVTTSQ 237 (267)
Q Consensus 216 ~wA~k~GL~VILDL---H~~aPG~Q 237 (267)
+-+.+.||.||||+ |. +-|..
T Consensus 272 ~~lHkaGI~VILDVVfNHT-ae~~~ 295 (697)
T COG1523 272 KALHKAGIEVILDVVFNHT-AEGNE 295 (697)
T ss_pred HHHHHcCCEEEEEEeccCc-ccccC
Confidence 99999999999998 77 65543
No 34
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.62 E-value=0.1 Score=52.70 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCEEEeeccccccc--------CCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMAS--------DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~--------d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
-+++|+++|+++|=|+=-+-.-. +-...+|-. |..+.|+++|+.|.++||+||||+
T Consensus 32 ~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 32 KLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-GTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred hHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 37899999999997753232111 101112322 578999999999999999999997
No 35
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.58 E-value=0.09 Score=53.27 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=38.8
Q ss_pred HHHHHhCCCCEEEe-ecc------cccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRI-PVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRI-Pvg------yw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++|+++|+|+|=| ||. +|- .++. ..+|-+ |..+.|+++|+-|.++||+||||+
T Consensus 117 l~yl~~LGv~~i~L~Pi~~~~~~~~~G-Y~~~~~~~~~~~~-G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 117 LPYLADLGITAIELMPVAQFPGTRGWG-YDGVLPYAPHNAY-GGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred hHHHHHcCCCEEEeCccccCCCCCCCC-CCccCcccccccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 78999999999987 441 121 1111 111222 478999999999999999999997
No 36
>PLN02361 alpha-amylase
Probab=94.49 E-value=0.12 Score=50.81 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=47.2
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC--c-----cchHHHHHHHHHHHHHCCCcEEEEc---CC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--V-----GGSLRALDNAFTWAGYAFFPVPSDI---TI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~--~-----~g~l~~LD~av~wA~k~GL~VILDL---H~ 231 (267)
.+|+. | ++.+++|+++|+++|=||=.+-.. ....+.|. + -|..+.|+++|+-|.++||+||+|+ |.
T Consensus 26 ~~w~~-i-~~kl~~l~~lG~t~iwl~P~~~~~-~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 26 DWWRN-L-EGKVPDLAKSGFTSAWLPPPSQSL-APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHH-H-HHHHHHHHHcCCCEEEeCCCCcCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 36644 3 344889999999999998754322 11122221 1 1578999999999999999999998 76
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.08 E-value=0.17 Score=43.69 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=44.9
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeec-ccccc-cCCCCC--CCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPV-GWWMA-SDPTPP--APYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPv-gyw~~-~d~~~~--~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+| +++|+.|++.||++|=|-- +|... ..|... .-+....-+.|+.+++.|.++||+|+|-|.-
T Consensus 20 ~~W-----~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 20 AQW-----REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHH-----HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 567 7789999999999996653 23211 011111 1122346688999999999999999999987
No 38
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.05 E-value=0.12 Score=53.98 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=40.0
Q ss_pred HHHHHhCCCCEEEe-ecc------cccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc---CC
Q 024471 174 FKFIAGNGLNAVRI-PVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TI 231 (267)
Q Consensus 174 f~~Ia~~G~N~VRI-Pvg------yw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL---H~ 231 (267)
+.+|+++|+|+|=| ||- +|- .++. ..+|-+ |..+-|+++|+-|.++||+||||+ |.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~G-Y~~~~y~ai~~~~-Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWG-YQPTGYYAPTSRF-GTPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 58999999999965 441 221 1111 112222 478999999999999999999997 65
No 39
>PRK09505 malS alpha-amylase; Reviewed
Probab=93.94 E-value=0.16 Score=53.06 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHhCCCCEEEee-c----------------------ccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIP-V----------------------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIP-v----------------------gyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++|+++|+|+|=|+ + +||.. +-..-+|-. |..+.|+++|+-|.++||+||||+
T Consensus 236 Ldyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~-D~~~id~~~-Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 236 LDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTL-DWTKLDANM-GTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred hHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCcc-ccccCCCCC-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 789999999999874 2 12211 111112222 478999999999999999999996
No 40
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.84 E-value=0.12 Score=53.97 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=39.8
Q ss_pred HHHHHHhCCCCEEEe-ecc---------------cccccCCC---CCCCCcc--chHHHHHHHHHHHHHCCCcEEEEc
Q 024471 173 DFKFIAGNGLNAVRI-PVG---------------WWMASDPT---PPAPYVG--GSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 173 Df~~Ia~~G~N~VRI-Pvg---------------yw~~~d~~---~~~P~~~--g~l~~LD~av~wA~k~GL~VILDL 229 (267)
-+++|+++|+|+|=| ||- ||-. ++. ..+|-+. +..+.|+++|+-|.++||+||||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGY-d~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGY-NTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCc-CcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999976 331 2221 211 1123222 467899999999999999999997
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=93.77 E-value=0.14 Score=53.28 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHHHHHhCCCCEEEe-ec---------------ccccccCCC---CCCCCccc----hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 173 DFKFIAGNGLNAVRI-PV---------------GWWMASDPT---PPAPYVGG----SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 173 Df~~Ia~~G~N~VRI-Pv---------------gyw~~~d~~---~~~P~~~g----~l~~LD~av~wA~k~GL~VILDL 229 (267)
-+++|+++|+|+|=| || .||-. ++. ..+|-++. ..+.|+++|+-|.++||+||||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGY-d~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGY-NPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCc-ccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999976 44 22321 111 11232221 36889999999999999999997
Q ss_pred ---CCCCC
Q 024471 230 ---TISVT 234 (267)
Q Consensus 230 ---H~~aP 234 (267)
|. ..
T Consensus 263 V~NHt-~~ 269 (658)
T PRK03705 263 VFNHS-AE 269 (658)
T ss_pred cccCc-cC
Confidence 66 44
No 42
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.66 E-value=0.18 Score=49.98 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=41.8
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccc-------cCCCC------------CCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMA-------SDPTP------------PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~-------~d~~~------------~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
|++. +++|+++|+++|=|+=-+... .++.+ .+|-. |..+.|+++|+-|.++||+||||+
T Consensus 24 I~~k-ldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~f-Gt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 24 LAER-APELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKY-GTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHH-HHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5444 799999999999886533221 11111 01221 478999999999999999999998
No 43
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=93.53 E-value=0.23 Score=50.04 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHHHHhCCCCEEEeeccccccc-----CCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIPVGWWMAS-----DPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~-----d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++|+++|+|+|=|+=-+-.-. ++. ..+|-. |..+.++++|+-|.++||+||||+
T Consensus 34 Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 34 LDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-GTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999997753221100 010 112222 578999999999999999999997
No 44
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=93.48 E-value=0.082 Score=48.74 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.|++.||++|+|+||+-. . |..| +.+++|.++||.|+.++-.
T Consensus 39 ~~d~~l~k~~G~N~iR~~h------~--p~~~----------~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH------Y--PPSP----------RFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT------S----SH----------HHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHHhcCcceEEccc------c--cCcH----------HHHHHHhhcCCEEEEeccc
Confidence 6789999999999999811 1 1112 3788999999999998643
No 45
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.13 Score=49.66 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCEE---------EeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 172 DDFKFIAGNGLNAV---------RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 172 ~Df~~Ia~~G~N~V---------RIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+-+++|+++|+++| .-..+|+.. +...-+|- -|.++-++++++-|.++||+||+|+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~-Dy~~id~~-~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVS-DYTKVDPH-FGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCcccc-chhhcCcc-cCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34789999999999 333344431 22222332 25899999999999999999999993
No 46
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.15 E-value=0.2 Score=52.90 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEe-ec------ccccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRI-PV------GWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pv------gyw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
++-+.+|+++|+|+|=| || +.|.. ++. ..+|.. |..+.|+++|+-|.++||+||||+
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY-~~~~~fa~~~~~-Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGY-HVTNFFAVSSRS-GTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCc-CcccCccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 55689999999999976 33 11211 111 112222 467899999999999999999996
No 47
>PRK10785 maltodextrin glucosidase; Provisional
Probab=93.05 E-value=0.25 Score=50.62 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCEEEee-cc-------cccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 173 DFKFIAGNGLNAVRIP-VG-------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIP-vg-------yw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
-+++|+++|+|+|=|. |- |+.. +-..-+|-. |..+.|+++|+-|.++||+||||+
T Consensus 184 kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~-Dy~~iDp~~-Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 184 KLPYLKKLGVTALYLNPIFTAPSVHKYDTE-DYRHVDPQL-GGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHcCCCEEEeCCcccCCCCCCcCcc-cccccCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3789999999999773 31 1110 101112322 478999999999999999999998
No 48
>PLN02784 alpha-amylase
Probab=93.02 E-value=0.53 Score=50.53 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCC--c-----cchHHHHHHHHHHHHHCCCcEEEEc---CCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--V-----GGSLRALDNAFTWAGYAFFPVPSDI---TISVTT 235 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~--~-----~g~l~~LD~av~wA~k~GL~VILDL---H~~aPG 235 (267)
++.+++|+++||++|=||=.+-.. ....+.|+ + -|..+.|+.+|+-|.++||+||+|+ |. +..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~-ag~ 596 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHR-CAH 596 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccc-ccc
Confidence 455899999999999998754322 11122221 1 1578999999999999999999997 77 543
No 49
>PLN02960 alpha-amylase
Probab=92.57 E-value=0.27 Score=52.70 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCEEEe-ecc------cccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc---CCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRI-PVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TISVTT 235 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pvg------yw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL---H~~aPG 235 (267)
++-+.+|+++|+|+|=| ||. .|-. ++. ..++-+ |..+-|+.+|+-|.++||+||||+ |. .|.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY-~~~~yfa~~~~y-Gtp~dfk~LVd~aH~~GI~VILDvV~NH~-~~d 494 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGY-KVTNFFAVSSRF-GTPDDFKRLVDEAHGLGLLVFLDIVHSYA-AAD 494 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCccccc-CCHHHHHHHHHHHHHCCCEEEEEeccccc-CCc
Confidence 44589999999999976 441 1211 111 111222 468999999999999999999996 65 543
No 50
>PRK12568 glycogen branching enzyme; Provisional
Probab=92.27 E-value=0.36 Score=50.90 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCEEEe-ec------ccccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRI-PV------GWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pv------gyw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
++-+.+|+++|+|+|=| || ++|-. ++. ..+|-. |..+.|+++|+.|.++||+||||+
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY-~~~~~~a~~~~~-G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGY-QPLGLYAPTARH-GSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCC-CCCcCCccCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 55579999999999965 44 12321 221 112222 478999999999999999999997
No 51
>PLN03059 beta-galactosidase; Provisional
Probab=92.04 E-value=0.37 Score=51.51 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=49.5
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCC
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 237 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~Q 237 (267)
+-.+.| ++-++.+|++|+|+|=.-|.|-.. +|.++ -|.-....-|.+.|+.|++.||+||| -||.-
T Consensus 56 ~~p~~W-----~d~L~k~Ka~GlNtV~tYV~Wn~H-Ep~~G-~~dF~G~~DL~~Fl~la~e~GLyvil-----RpGPY 121 (840)
T PLN03059 56 STPEMW-----PDLIQKAKDGGLDVIQTYVFWNGH-EPSPG-NYYFEDRYDLVKFIKVVQAAGLYVHL-----RIGPY 121 (840)
T ss_pred CCHHHH-----HHHHHHHHHcCCCeEEEEeccccc-CCCCC-eeeccchHHHHHHHHHHHHcCCEEEe-----cCCcc
Confidence 334567 566889999999999999966644 44443 24333567899999999999999999 67753
No 52
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=91.72 E-value=0.31 Score=48.02 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||++|+.-|=++| ||-..+...+.-| .|..-+++++.+++.|||| |+-.|+
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 6778999999999999999 8865443322234 6889999999999999987 667798
No 53
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=91.46 E-value=0.45 Score=50.82 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCEEEeecc----------cccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVG----------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvg----------yw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.+-+.+|+++|+++|=|+=- |+. .+...-+|-. |..+-|+++++-|.++||+||||+
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv-~D~~~idp~l-Gt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPILTAVPGSTHGYDV-VDHSEINPEL-GGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCC-CCCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34578999999999955321 221 1111112332 478999999999999999999997
No 54
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=91.41 E-value=0.46 Score=48.71 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEe-ecc-------------c-ccccCCCC---C------CCCcc-chHHHHHHHHHHHHHCCCcEE
Q 024471 172 DDFKFIAGNGLNAVRI-PVG-------------W-WMASDPTP---P------APYVG-GSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRI-Pvg-------------y-w~~~d~~~---~------~P~~~-g~l~~LD~av~wA~k~GL~VI 226 (267)
+-+++|+++|+|+|=| ||- | |-. ++.. + +|... +..+.|+++|+-|.++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY-~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY-DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC-CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 3489999999999976 442 1 211 1110 0 11111 136889999999999999999
Q ss_pred EEc
Q 024471 227 SDI 229 (267)
Q Consensus 227 LDL 229 (267)
||+
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 997
No 55
>PLN02801 beta-amylase
Probab=91.10 E-value=0.75 Score=46.58 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||++|+.-|=++| ||-..+...+.-| .|..-+++++.+++.|||+ |+-.|.
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 98 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQ 98 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5668999999999999999 8865443222234 5888889999999999986 788898
No 56
>PRK14705 glycogen branching enzyme; Provisional
Probab=90.96 E-value=0.49 Score=52.52 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCEEEe-ec------ccccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRI-PV------GWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pv------gyw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
++-+++|+++|+|+|=| || ++|-. ++. ..+|-+ |..+-|+++|+-|.+.||+||||+
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY-~~~~y~ap~~ry-Gt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGY-QVTSYFAPTSRF-GHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCC-CccccCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34478999999999954 66 23421 221 112222 478999999999999999999996
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.88 E-value=0.55 Score=48.77 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCEEEe-ecc------cccccCCCC---CCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRI-PVG------WWMASDPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pvg------yw~~~d~~~---~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.-+.+|+++|+|+|=| ||. +|-. ++.. .++-+ |..+-|+++|+.|.++||+||||+
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~-g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRL-GTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCc-Cccccccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33357999999999975 551 2321 1110 11111 478999999999999999999996
No 58
>PLN02161 beta-amylase
Probab=90.55 E-value=0.91 Score=46.07 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||.+|++-|=++| ||-..+...+.-| .|..-+++++.+++.|||+ |+-.|.
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 178 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHS 178 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 6678999999999999999 8865443222234 5888889999999999985 678888
No 59
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=90.43 E-value=0.8 Score=49.27 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCEEEeecc----------cccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVG----------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvg----------yw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.+-+.+|+++|+++|=|+=- |+. .|....+|.. |..+.|+++++-|+++||+||+|+
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv-~D~~~idp~l-Gt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDV-VDHTRINPEL-GGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCc-CCCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34578999999999976432 221 1111123333 478999999999999999999998
No 60
>PLN02705 beta-amylase
Probab=90.42 E-value=0.86 Score=47.21 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCc--EEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP--VPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~--VILDLH~ 231 (267)
+..++.||.+|++-|=++| ||-..+...+.-| .|..-+++++.+++.||| ||+-.|.
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHq 329 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHE 329 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeec
Confidence 5668899999999999999 8865443222234 588888999999999998 5788898
No 61
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=89.87 E-value=0.64 Score=53.10 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEeec----------ccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPV----------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPv----------gyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.+-+.+|+++|+++|=|.= ||+. .|...-+|-. |..+-|+++++-|+++||+||||+
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv-~D~~~idp~l-G~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKARPGSTHGYDI-VDHSQINPEI-GGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCC-CCCCccCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3457789999999996532 1221 1211123333 478999999999999999999998
No 62
>PLN02803 beta-amylase
Probab=89.86 E-value=1.1 Score=45.64 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||.+|++-|=++| ||-..+...+.-| .|..-+++++.+++.|||| |+-.|.
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 168 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQ 168 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5668999999999999999 8865443222234 5888889999999999985 678888
No 63
>PLN00197 beta-amylase; Provisional
Probab=89.28 E-value=1.3 Score=45.40 Aligned_cols=57 Identities=14% Similarity=0.337 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||.+|++-|=++| ||-..+...+.-| .|..-+++++.+++.|||| |+-.|.
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHq 188 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQ 188 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5678899999999999999 8865443222234 5888889999999999985 678888
No 64
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=88.98 E-value=0.89 Score=50.59 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCEEEe-ecc---------------cccccCCC---CCCCCcc-chHHHHHHHHHHHHHCCCcEEEEc-
Q 024471 171 EDDFKFIAGNGLNAVRI-PVG---------------WWMASDPT---PPAPYVG-GSLRALDNAFTWAGYAFFPVPSDI- 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRI-Pvg---------------yw~~~d~~---~~~P~~~-g~l~~LD~av~wA~k~GL~VILDL- 229 (267)
++.+++|+++|+|+|=| ||- ||-. ++. ..+|-++ +..+.|+++|+-|.++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY-~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGY-NTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCC-CCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 45688999999999965 442 2211 111 1123222 268899999999999999999997
Q ss_pred --CCCCCC
Q 024471 230 --TISVTT 235 (267)
Q Consensus 230 --H~~aPG 235 (267)
|. ..+
T Consensus 269 ~NHt-~~~ 275 (1221)
T PRK14510 269 FNHT-GES 275 (1221)
T ss_pred cccc-cCC
Confidence 66 554
No 65
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=88.61 E-value=1.3 Score=41.24 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHhCCCCEEEeecc-ccccc-CC--CCCCCC-------------ccchHHHHHHHHHHHHHCCCcEE-EEcCC
Q 024471 173 DFKFIAGNGLNAVRIPVG-WWMAS-DP--TPPAPY-------------VGGSLRALDNAFTWAGYAFFPVP-SDITI 231 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvg-yw~~~-d~--~~~~P~-------------~~g~l~~LD~av~wA~k~GL~VI-LDLH~ 231 (267)
-++..++.|||.||+=+- .+-.. .+ .+..|+ ....|+.||+.|+.|.++||.+- |=+|+
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg 111 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWG 111 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-H
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 356788999999999883 22111 11 111122 12379999999999999999994 45663
No 66
>PLN02905 beta-amylase
Probab=88.60 E-value=1.5 Score=45.71 Aligned_cols=57 Identities=11% Similarity=0.326 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~ 231 (267)
+..++.||.+|+.-|=++| ||-..+...+.-| .|..-+++++.+++.|||+ |+-.|.
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHq 347 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHE 347 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5678999999999999999 8865443222234 5888889999999999985 678888
No 67
>PRK10150 beta-D-glucuronidase; Provisional
Probab=88.47 E-value=0.59 Score=47.61 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.|++.||++|+|+||+. +. |..| ..++.|-++||.|+-++
T Consensus 316 ~~d~~l~K~~G~N~vR~s----h~----p~~~----------~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTS----HY----PYSE----------EMLDLADRHGIVVIDET 356 (604)
T ss_pred HHHHHHHHHCCCCEEEec----cC----CCCH----------HHHHHHHhcCcEEEEec
Confidence 568999999999999992 11 1112 37899999999999875
No 68
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.18 E-value=0.88 Score=44.07 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=38.8
Q ss_pred cCHHHHHHH---HhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFI---AGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~I---a~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.++|.++| ++.||.-| |.....+++.....+.++++++..|.++|++||+|+-.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~I--------Ftsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRI--------FTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred cchhHHHHHHHHHHcCccce--------eeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 345555555 67798877 32222233444458999999999999999999999754
No 69
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=87.63 E-value=0.83 Score=44.77 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=44.0
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEE-EEc-CCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVP-SDI-TISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VI-LDL-H~~aPG 235 (267)
..+|++.++.++++|+|.|-|.| -.+.+..-..--.....+.+.++++.++++|+.+| +|| -+ .||
T Consensus 137 ~~lt~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~G-lP~ 204 (430)
T PRK08208 137 ATTTAEKLALLAARGVNRLSIGV--QSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYG-IPG 204 (430)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCC
Confidence 34799999999999999666655 33211100000011267788899999999999864 884 56 776
No 70
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=87.56 E-value=3.4 Score=33.33 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred EEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEc-CCCceeeeeccceeeee
Q 024471 54 FRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTAD 119 (267)
Q Consensus 54 ~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika-~nG~~lqa~~~~~vta~ 119 (267)
|=+-+++|+.+.. +|.|.++.+.......|+|+.-.. +.|.|+. ..++||-....+.|.+.
T Consensus 5 Ly~~~~~~L~i~~---~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 5 LYCRTGYFLQINP---NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEETTSEEEEEET---TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred EEECCCeEEEECC---CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEccc
Confidence 3444599999987 568999999988999999988752 6999999 67999999988887765
No 71
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=87.55 E-value=0.92 Score=43.51 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=47.3
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCc-EEEE-cCCCCCC
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSD-ITISVTT 235 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~-VILD-LH~~aPG 235 (267)
.++.+= .-++++.++.+++.|+|.|=|+| -.+.+..-..--.....+.+.+++++|+++|+. |-+| |-+ .||
T Consensus 93 tiE~nP-~~lt~e~l~~lk~~G~nrisiGv--QS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~G-lPg 166 (353)
T PRK05904 93 TIECNP-ELITQSQINLLKKNKVNRISLGV--QSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYC-LPI 166 (353)
T ss_pred EEEecc-CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeec-CCC
Confidence 344433 46789999999999999665555 332111000000113677888999999999997 8899 456 776
No 72
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=87.50 E-value=1.5 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEc
Q 024471 208 LRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDL 229 (267)
.+.|+++|+-|.++||+||||+
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 6889999999999999999996
No 73
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=87.41 E-value=0.99 Score=45.96 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHhCCCCEEEee---------cccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIP---------VGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIP---------vgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.++|+++|+++|=|| +|||+ .+...-.|-. |..+-++.+|.++.+.||++|+|+
T Consensus 46 ldyi~~lG~taiWisP~~~s~~~~~GY~~-~d~~~l~p~f-Gt~edf~~Li~~~h~~gi~ii~D~ 108 (545)
T KOG0471|consen 46 LDYIKELGFTAIWLSPFTKSSKPDFGYDA-SDLEQLRPRF-GTEEDFKELILAMHKLGIKIIADL 108 (545)
T ss_pred hhHHHhcCCceEEeCCCcCCCHHHhccCc-cchhhhcccc-cHHHHHHHHHHHHhhcceEEEEee
Confidence 789999999999886 44553 1221112211 578999999999999999999998
No 74
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=86.76 E-value=1.6 Score=44.47 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCC-CCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCCC-CCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTI-MGGPV 246 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~-~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~~~-hsG~~ 246 (267)
.+|++.|+++|+++-|+.|+|--...... .....+.++++-.++|+-..++||..++-|.. -.=.|--.+ +.|.+
T Consensus 94 keDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDlPq~LeDeYgGwL 170 (524)
T KOG0626|consen 94 KEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDLPQALEDEYGGWL 170 (524)
T ss_pred HHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCCCHHHHHHhcccc
Confidence 78999999999999999999975432211 12233458999999999999999999999876 433454444 55554
No 75
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=86.75 E-value=1.1 Score=43.62 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCc-EEEEc-CCCCCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 235 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~-VILDL-H~~aPG 235 (267)
-+|++.++.+++.|+| ||-+|--.+.+..-..--.....+.+.++++.+++.|+. |-+|| -+ .||
T Consensus 112 ~lt~e~l~~l~~~Gvn--rislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G-lPg 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVN--RVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG-LPH 178 (400)
T ss_pred cCCHHHHHHHHHCCCC--EEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCC
Confidence 3789999999999999 555555543221000000012677888999999999999 77995 56 787
No 76
>PLN02877 alpha-amylase/limit dextrinase
Probab=86.43 E-value=1.9 Score=46.99 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEc
Q 024471 208 LRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDL 229 (267)
...++++|+-|.++||+||+|+
T Consensus 465 I~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 5678999999999999999996
No 77
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=86.29 E-value=1 Score=49.19 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.|++.||++|+|+||+. +. |..| +..++|-++||+|+-++
T Consensus 374 ~~di~lmK~~g~NaVR~s----Hy----P~~p----------~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCS----HY----PNHP----------LWYELCDRYGLYVVDEA 414 (1027)
T ss_pred HHHHHHHHHCCCCEEEec----CC----CCCH----------HHHHHHHHcCCEEEEec
Confidence 558999999999999993 11 1123 26799999999999884
No 78
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=85.43 E-value=1.4 Score=42.14 Aligned_cols=65 Identities=17% Similarity=-0.003 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEc-CCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDL-H~~aPG 235 (267)
..++++.++.|+++|+|.|-|.| -.+.+.. -.-. .....+.+.++++.++++|+. |.+|+ -+ .||
T Consensus 104 ~~i~~e~l~~l~~~G~~rvslGv--QS~~~~~-L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~G-lPg 171 (375)
T PRK05628 104 ESTSPEFFAALRAAGFTRVSLGM--QSAAPHV-LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYG-TPG 171 (375)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEecc-CCC
Confidence 45899999999999999766666 3221110 0000 012677888999999999999 99996 45 675
No 79
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=85.37 E-value=1.6 Score=41.63 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCc-EEEEcCCCCCC
Q 024471 161 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP-VPSDITISVTT 235 (267)
Q Consensus 161 l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~-VILDLH~~aPG 235 (267)
++.+= .-+|++.++.+++.|+|-|-|.| -.+.+..- -.. ....+.+.++++.++++|+. |-+||=--.||
T Consensus 89 iE~nP-~~~~~e~l~~l~~~GvnRiSiGv--QS~~~~~L--~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 89 TEANP-NSATKAWLKGMKNLGVNRISFGV--QSFNEDKL--KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred EEeCC-CCCCHHHHHHHHHcCCCEEEEec--ccCCHHHH--HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 44443 45789999999999999555444 43321100 011 13678888999999999997 66887532676
No 80
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=85.27 E-value=1.7 Score=41.45 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=43.8
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCc-EEEEcC-CCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSDIT-ISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~-VILDLH-~~aPG 235 (267)
..+|++.++.+++.|+|. |-||.-.+.+..-..--.....+.+.++++.++++|+. |-+|+= + .||
T Consensus 95 ~~~t~e~l~~l~~~G~~r--vsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~G-lPg 162 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNR--LSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFG-LPN 162 (374)
T ss_pred CcCCHHHHHHHHHcCCCE--EEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC
Confidence 458999999999999994 55554443211000000112577888999999999997 778854 5 676
No 81
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=85.21 E-value=2 Score=44.72 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=41.6
Q ss_pred CHHHHHHHHhCCCCEEEe-eccc------ccccCCC-CCCCCc-cchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 170 VEDDFKFIAGNGLNAVRI-PVGW------WMASDPT-PPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRI-Pvgy------w~~~d~~-~~~P~~-~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++-+.+|+++|+++|=| ||.= |-. ++. .+.|-. -|.-+-|+++|+.|.++||.||||.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGY-q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGY-QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCC-CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 355677899999999985 6632 221 221 112211 1578999999999999999999995
No 82
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=85.16 E-value=1.1 Score=48.77 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.|++.||++|+|+||.- + .|.+| ...+.|-++||+|+-+.
T Consensus 358 ~~dl~lmK~~g~NavR~s----H----yP~~~----------~fydlcDe~GllV~dE~ 398 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTA----H----YPNDP----------RFYELCDIYGLFVMAET 398 (1021)
T ss_pred HHHHHHHHHCCCCEEEec----C----CCCCH----------HHHHHHHHCCCEEEECC
Confidence 578999999999999983 1 12223 26789999999999874
No 83
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=84.71 E-value=1.9 Score=41.11 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=44.4
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEcCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDLH~~aPG 235 (267)
..+|++.++.|+++|+|.|-|.| -.+.+..- +-. .....+.+.++++.++++|+. |-+|+---.||
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGv--qS~~~~~l-~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGV--QSFRDDKL-LFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCChHHH-HHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 45899999999999999555544 33211100 000 113688888999999999996 77896542666
No 84
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=84.62 E-value=1.4 Score=43.55 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=44.6
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEc-CCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDL-H~~aPG 235 (267)
..+|++.++.+++.|+| ||-||--.+.+.. -... .....+.+.+++++++++|+. |-+|| -+ .||
T Consensus 148 ~~lt~e~l~~L~~~G~~--rvsiGvQS~~~~v-l~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~G-lPg 215 (453)
T PRK13347 148 RTVTAEMLQALAALGFN--RASFGVQDFDPQV-QKAINRIQPEEMVARAVELLRAAGFESINFDLIYG-LPH 215 (453)
T ss_pred ccCCHHHHHHHHHcCCC--EEEECCCCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEe-CCC
Confidence 45799999999999999 5555544331100 0001 113688889999999999997 78885 56 776
No 85
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=83.75 E-value=2.1 Score=41.21 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEc-CCCCCCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 236 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDL-H~~aPG~ 236 (267)
.++++.++.+++.|+|.|-|-| -.+.+..- .-. .....+.+.++++.|++.|+. |-+|| -+ .||-
T Consensus 100 ~~~~~~l~~l~~~G~nrislGv--QS~~~~~L-~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~G-lPgq 167 (370)
T PRK06294 100 NLSESYIRALALTGINRISIGV--QTFDDPLL-KLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYG-LPTQ 167 (370)
T ss_pred CCCHHHHHHHHHCCCCEEEEcc--ccCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCCC
Confidence 4789999999999999554444 43311100 000 012567788899999999996 88995 45 6763
No 86
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=83.09 E-value=4.1 Score=34.03 Aligned_cols=55 Identities=13% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCCEEEeecc---cccccCC--CCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 172 DDFKFIAGNGLNAVRIPVG---WWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvg---yw~~~d~--~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
+-.+.+++.|+|+|-|-.+ =|.+... .+..|+.. .+.|.+.|+.|++.||+|++=
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay 63 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAY 63 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEE
Confidence 4467889999999999664 1222221 22356664 689999999999999999963
No 87
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.18 E-value=1.5 Score=42.60 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++.+++.||..|=.-+ .-+ +......+++|++++++|+++||+||+|+..
T Consensus 20 i~~a~~~Gf~~iFTSL-----~ip---e~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 20 IEKAAKYGFKRIFTSL-----HIP---EDDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHCCCCEEECCC-----CcC---CCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 4556788988772222 111 1111347899999999999999999999876
No 88
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=80.96 E-value=2.3 Score=40.95 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC-CCCCCC
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT-ISVTTS 236 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH-~~aPG~ 236 (267)
.++.+=+ -++++.++.+++.|+| ||-+|--.+.+..-..--.....+.+.++++++++.++.|.+||= + .||-
T Consensus 94 t~E~~P~-~i~~e~L~~l~~~Gvn--rislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~G-lPgq 167 (380)
T PRK09057 94 TLEANPT-SVEAGRFRGYRAAGVN--RVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYA-RPGQ 167 (380)
T ss_pred EEEECcC-cCCHHHHHHHHHcCCC--EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecC-CCCC
Confidence 4555553 4789999999999999 666665544221000000112577778899999999999999974 5 6654
No 89
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=80.92 E-value=2.9 Score=39.47 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=47.5
Q ss_pred hcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEE-cCCCCCC
Q 024471 166 STYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD-ITISVTT 235 (267)
Q Consensus 166 ~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILD-LH~~aPG 235 (267)
-.+++++.++.|+++|++ +||-+|...+.+..-..-.. ....+.+.++++.++++||.|..+ |-+ .||
T Consensus 112 pd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G-~P~ 181 (313)
T TIGR01210 112 PEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFK-PPF 181 (313)
T ss_pred CCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCC
Confidence 357899999999999987 47777777542211000011 125778889999999999999888 445 665
No 90
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=80.88 E-value=10 Score=32.85 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCcceEeEE--eeCCeEEEEE-eCCeEEEeecCCCCceEEEccCCCC-----CCCc-eEEEeCC-CCCcceEEEc-CCC
Q 024471 37 QTGHLHQLWR--INETNFHFRV-FNKQFIGLDTNGNGIDIVAESNTPR-----SSET-FEIVRNS-NDLSRVRIKA-PNG 105 (267)
Q Consensus 37 s~wetf~lwr--~~~~~f~~r~-~~~~f~~~~~~g~~~~v~A~~~~p~-----~~e~-F~ivr~~-~~~~~v~ika-~nG 105 (267)
.-+-.|++=- ..+..-.+|. .+++||...+ +++.-|.|.++.|. .++| |++|+-+ ++.+-|+++. -||
T Consensus 40 dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~ 118 (153)
T PF07468_consen 40 DPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNG 118 (153)
T ss_dssp -CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTT
T ss_pred CCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcccccCCCCceEEEEEEecCCCccEEEEEecCCc
Confidence 4556677633 3466688888 6999999864 21336999988665 4777 9999864 4557888888 889
Q ss_pred ceeee
Q 024471 106 FFLQA 110 (267)
Q Consensus 106 ~~lqa 110 (267)
.|++-
T Consensus 119 ~~~~r 123 (153)
T PF07468_consen 119 HFCKR 123 (153)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99984
No 91
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=80.78 E-value=2.8 Score=40.08 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=44.2
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEcC-CCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDIT-ISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDLH-~~aPG 235 (267)
..++++.++.+++.|+|.|=|.| -.+.+.. -+-. .....+.+.+++++++++|+. |-+|+= + .||
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGv--qS~~~~~-l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~G-lPg 163 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGV--QTFNDEL-LKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYA-LPG 163 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecC-CCC
Confidence 45789999999999999666655 3221100 0000 113678888999999999997 668874 5 676
No 92
>PRK05660 HemN family oxidoreductase; Provisional
Probab=79.90 E-value=3.1 Score=40.12 Aligned_cols=73 Identities=16% Similarity=0.011 Sum_probs=47.9
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE-EEEcCCCCCC
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV-PSDITISVTT 235 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V-ILDLH~~aPG 235 (267)
.++.+= ..++++.++.++++|+| ||-+|--.+.+..-..--.....+.+.++++.|++.|+.. -+||=--.||
T Consensus 97 t~e~np-~~l~~e~l~~Lk~~Gv~--risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 97 TMEANP-GTVEADRFVGYQRAGVN--RISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD 170 (378)
T ss_pred EEEeCc-CcCCHHHHHHHHHcCCC--EEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 344443 45789999999999999 6666655442110000001136888899999999999975 4887542666
No 93
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=79.13 E-value=2.4 Score=43.10 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=46.1
Q ss_pred hhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 165 w~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
.-.+++++.++.|++.|+| ||-+|--.+.+..-..--.....+.+.+++++++++|++|.+||=--.||
T Consensus 200 RPD~i~~e~L~~L~~~G~~--rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGAT--RVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred cCCcCCHHHHHHHHHcCCC--EEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 3457899999999999997 66666554322100000012368888999999999999977776421555
No 94
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=78.45 E-value=6.6 Score=41.29 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCEEEeeccccc-----c-cCCC--------CC--CCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWM-----A-SDPT--------PP--APYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~-----~-~d~~--------~~--~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+.-+++|+++|++.|=+.=-|-. . ..|. +. +|-. |.++-++++++-|.++||+||+||=
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~-GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLL-GSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCccc-CCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56678999999999987543332 0 0011 01 2222 5899999999999999999999983
No 95
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=78.30 E-value=4.5 Score=40.33 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=48.7
Q ss_pred ccchhhhhhccCCCChhHHHHhhhhcccCHHHHHHHH-hCCCCEEEeecccccccCCCCCCCCc----c----chHHHHH
Q 024471 142 MQGEFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIA-GNGLNAVRIPVGWWMASDPTPPAPYV----G----GSLRALD 212 (267)
Q Consensus 142 ~~dE~tl~~~~G~~~a~~~l~~Hw~tyITe~Df~~Ia-~~G~N~VRIPvgyw~~~d~~~~~P~~----~----g~l~~LD 212 (267)
+.--|..|. |...|...|+..|+ ..++.++ +.||..||+ ++++.+... .+. + -.|.+||
T Consensus 20 l~~~W~~~~--~~g~a~~~l~~~~q-----~~l~~~~~~~gf~yvR~---h~l~~ddm~--~~~~~~~~~~~~Ynf~~lD 87 (486)
T PF01229_consen 20 LKHFWRFCV--GSGRANLLLRADWQ-----EQLRELQEELGFRYVRF---HGLFSDDMM--VYSESDEDGIPPYNFTYLD 87 (486)
T ss_dssp --SGGGSEE--EES-GGGGGBHHHH-----HHHHHHHCCS--SEEEE---S-TTSTTTT---EEEEETTEEEEE--HHHH
T ss_pred ccchhhhhc--CCCchHHHhhHHHH-----HHHHHHHhccCceEEEE---EeeccCchh--hccccccCCCCcCChHHHH
Confidence 344455563 44577888888884 4566675 779999999 776644321 111 1 1699999
Q ss_pred HHHHHHHHCCCcEEEEcCCCCC
Q 024471 213 NAFTWAGYAFFPVPSDITISVT 234 (267)
Q Consensus 213 ~av~wA~k~GL~VILDLH~~aP 234 (267)
++++...+.||+-+|.|=- .|
T Consensus 88 ~i~D~l~~~g~~P~vel~f-~p 108 (486)
T PF01229_consen 88 QILDFLLENGLKPFVELGF-MP 108 (486)
T ss_dssp HHHHHHHHCT-EEEEEE-S-B-
T ss_pred HHHHHHHHcCCEEEEEEEe-ch
Confidence 9999999999999999975 44
No 96
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.03 E-value=3 Score=41.22 Aligned_cols=66 Identities=9% Similarity=-0.110 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCC-CcEEEEcC-CCCCCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAF-FPVPSDIT-ISVTTS 236 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~G-L~VILDLH-~~aPG~ 236 (267)
-+|++.++.+++.|+|.|-|.| -.+.+..-..--.....+.+.++++.++++| +.|.+||= + .||-
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGV--QSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~G-lPgq 227 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGV--QSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFG-LPGQ 227 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecC--CcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEee-CCCC
Confidence 4689999999999999555544 4331110000000125677888999999999 88999984 5 6664
No 97
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=77.87 E-value=2.8 Score=44.85 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+.|++.||++|+|+||.- +| |+. .+..++|-++||.||-|.=
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy----------P~~-------~~~ydLcDelGllV~~Ea~ 365 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY----------PNS-------EEFYDLCDELGLLVIDEAM 365 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC----------CCC-------HHHHHHHHHhCcEEEEecc
Confidence 778999999999999986 22 221 2367899999999999853
No 98
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.57 E-value=6.3 Score=41.17 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCC--CCCCCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS--QDLTIMGGP 245 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~--QN~~~hsG~ 245 (267)
++-++.+++.|+|+|--.|.|-.. .|.++.-+-+|. --|-+.|..|++.||+|||= +|. +..+++.|-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~H-ep~~g~y~FsG~-~DlvkFikl~~~~GLyv~LR-----iGPyIcaEw~~GG~ 121 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNLH-EPSPGKYDFSGR-YDLVKFIKLIHKAGLYVILR-----IGPYICAEWNFGGL 121 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecccc-cCCCCcccccch-hHHHHHHHHHHHCCeEEEec-----CCCeEEecccCCCc
Confidence 445688999999999999976643 444442222433 33555699999999999993 443 455666664
No 99
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=76.35 E-value=2.2 Score=33.81 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=45.4
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEcCCCCCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTT 235 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDLH~~aPG 235 (267)
.++++.++.|++.|++.|++.+..-.- ..-..++ ....++.+-++++.+.++|+. +++=+.. .||
T Consensus 87 ~~~~~~l~~l~~~~~~~i~~~l~s~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~-~~~ 153 (166)
T PF04055_consen 87 LLDEELLDELKKLGVDRIRISLESLDE--ESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVG-LPG 153 (166)
T ss_dssp THCHHHHHHHHHTTCSEEEEEEBSSSH--HHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEE-BTT
T ss_pred chhHHHHHHHHhcCccEEecccccCCH--HHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-eCC
Confidence 344899999999999999998843210 0000111 234789999999999999998 6666655 555
No 100
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=75.21 E-value=4.4 Score=39.39 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 159 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 159 ~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
-.++.+- .-++++.++.|++.|+| ||-+|--.+.+..-..--.....+...++++.|++.+..|-+||=--.||-
T Consensus 100 itiE~nP-~~~~~e~l~~l~~~Gvn--RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 100 ITLETNP-TSFETEKFKAFKLAGIN--RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred EEEEeCC-CcCCHHHHHHHHHCCCC--EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 3455554 34889999999999998 666665554221000000112567777889999999889999964326664
No 101
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=73.15 E-value=9.9 Score=43.18 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCC--------CCCCCcc---chHHHHHHHHHHHHH-CCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPT--------PPAPYVG---GSLRALDNAFTWAGY-AFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~--------~~~P~~~---g~l~~LD~av~wA~k-~GL~VILDL 229 (267)
++.++.|+++|+|.|=++=-+-.-.... .-+|... +..+-|+++|+-|.+ +||+||+|+
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6789999999999997632111000111 1123222 467889999999988 599999997
No 102
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=72.43 E-value=5.6 Score=39.22 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=44.6
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCC-cEEEEcCCCCCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFF-PVPSDITISVTT 235 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL-~VILDLH~~aPG 235 (267)
-+|++.++.|++.|+|.|-|.| -.+.+.. -.-. .....+.+.++++.++++|+ .|-+||=--.||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGv--qS~~~~~-L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGV--QDFDPEV-QKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECC--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 4799999999999999776666 2221100 0000 01367888899999999999 788886532666
No 103
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=71.66 E-value=5.4 Score=40.17 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCC-cEEEEcCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFF-PVPSDITISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL-~VILDLH~~aPG 235 (267)
..+|++-++.|++.|+| ||-||--.+.+..-..--.....+.+.++++.|+++|+ .|-+||=--.||
T Consensus 265 d~it~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 265 DTITEEKLEVLKKYGVD--RISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG 332 (488)
T ss_pred CCCCHHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 46799999999999999 55555544321100000011368889999999999999 677886532665
No 104
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.46 E-value=5.3 Score=33.37 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++-++..+.+|+..|+++.+.+........+.......+.|+++.+.|+++|+.+.|=-|.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 5567888899999999998743111110001111235688899999999999888887777
No 105
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=71.11 E-value=6.7 Score=36.13 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=60.7
Q ss_pred CCCcceEeEEeeCCeEEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEcCCCceeeeecc
Q 024471 37 QTGHLHQLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTE 113 (267)
Q Consensus 37 s~wetf~lwr~~~~~f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika~nG~~lqa~~~ 113 (267)
+-=|-|-|-.|++++..|+.-=|+|+++++ ++-|++++..-+.-|.|..|--. +|+.+.++||.|.-.+..
T Consensus 81 ~p~e~f~avki~dsrIaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vFq~---~r~a~~as~s~~~~~~e~ 151 (246)
T KOG3962|consen 81 EPEEQFMAVKISDSRIALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVFQE---GRMALLASNSCFIRCNEA 151 (246)
T ss_pred CchhhEEEEEccCceEEecccccceeeecC---CccEEEehhhcCcHhhchhhhhc---cceEEeeccceeEEechh
Confidence 344778888999999999998899999998 77899999999999999887655 788999999999876543
No 106
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=70.92 E-value=5.4 Score=39.35 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=43.5
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCc-EEEEcCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~-VILDLH~~aPG 235 (267)
..++++.++.|+++|+|.|-|.| -.+.+.. -+-. .....+.+.++++.++++|+. |-+|+---.||
T Consensus 147 ~~l~~e~l~~lk~~G~~risiGv--qS~~~~~-l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (455)
T TIGR00538 147 RYITKDVIDALRDEGFNRLSFGV--QDFNKEV-QQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK 214 (455)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcC--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC
Confidence 35789999999999999555544 3321100 0001 012577888999999999996 77886531666
No 107
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=70.83 E-value=6.9 Score=41.47 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=41.4
Q ss_pred cCHHHHHHHHhCCCCEEEe-ecc----cc-c-------ccCCC--CCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 169 IVEDDFKFIAGNGLNAVRI-PVG----WW-M-------ASDPT--PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRI-Pvg----yw-~-------~~d~~--~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+||+++.-||.+|+|+|-| ||- |. . |+.|. -+.|-.......++++|+.|...||-||||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999986 552 11 0 11110 0001101246789999999999999999997
No 108
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=70.20 E-value=5.9 Score=38.41 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=42.8
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
..++.+.++.++++|+| ||-+|--.+.+..- +-. .....+.+.++++++++.+..|-+||=--.||
T Consensus 118 ~~~~~e~L~~l~~~Gvn--risiGvQS~~~~~L-~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 184 (394)
T PRK08898 118 GTFEAEKFAQFRASGVN--RLSIGIQSFNDAHL-KALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG 184 (394)
T ss_pred CCCCHHHHHHHHHcCCC--eEEEecccCCHHHH-HHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC
Confidence 45788999999999999 55555444311100 000 01245677888999999888899987431666
No 109
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=68.62 E-value=6.7 Score=38.70 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=42.7
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEEc-CCCCCCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI-TISVTTS 236 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILDL-H~~aPG~ 236 (267)
++++.++.|+++|++.|-|.+ ....+..- +-+. ....+.+.+++++|+++||.|.+++ -+ .||-
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGi--ES~s~~~L-~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiG-lPge 350 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGY--ESGDQQIL-KNIKKGLTVEIARRFTRDCHKLGIKVHGTFILG-LPGE 350 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcC--CCCCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEe-CCCC
Confidence 689999999999999766544 32211000 0010 1256778889999999999998884 46 6663
No 110
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.64 E-value=7.5 Score=34.58 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+++++.+++.|+..|||++.-..........--..+.++.+.++++.|+++|+.|.+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 88999999999999999984321000000000112368888899999999999999988
No 111
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.46 E-value=15 Score=33.78 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=40.5
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+..+|++...+.|+..|||.+.- ..++.+.++++.|+++|+.|.+.+=.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46788999999999999996511 15788889999999999999988765
No 112
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=67.42 E-value=10 Score=34.25 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.-++..+.+|.+.||++- +....+.. .+.......+.|.++++.|+++|+.+.|=.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAG-YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecC-cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 4557788899999999863 21111110 01111235678889999999999999998775
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=65.48 E-value=9.4 Score=35.23 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccc--cccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw--~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-...+|++...+.|+..|||.++=- +..... . .-....++.+.++++.|+++|++|.+.+=.
T Consensus 71 r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 71 RCHMDDARIAVETGVDGVDLVFGTSPFLREASH-G-KSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-C-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3568899999999999999977421 110000 0 011236888999999999999999988744
No 114
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.69 E-value=16 Score=33.35 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=39.5
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VIL 227 (267)
.++++.++.|+++|++.|-+-+- . ++.-.+-.. ...++...++++.++++||+|..
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E---~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD---T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc---C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 68999999999999998877653 1 111001111 23677788899999999999754
No 115
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=62.21 E-value=21 Score=33.72 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCEEEeecccccc-cCCCCCCC---Cc------cchHHHHHHHHHHHHHCCCcEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMA-SDPTPPAP---YV------GGSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~-~d~~~~~P---~~------~g~l~~LD~av~wA~k~GL~VI 226 (267)
++-++.|+++|||+|=+-|-.... .=++...| +. ...++.|..+|+.|.|+||.|.
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEE
Confidence 445678899999999887743210 00111122 11 1258899999999999999875
No 116
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=62.10 E-value=9.8 Score=41.35 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc---CCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI---TISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL---H~~aPG~ 236 (267)
..+.++++|+-|.++||+||||+ |. .+++
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt-~~~g 433 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHT-NASG 433 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccc-cccC
Confidence 46789999999999999999998 66 5443
No 117
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=62.09 E-value=21 Score=33.01 Aligned_cols=49 Identities=27% Similarity=0.135 Sum_probs=39.3
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.++|++...+.|+..|||=++-. .++.+..+++.|+++|+.|.+.+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALN--------------DVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 468999999999999999933111 2788899999999999999876653
No 118
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.68 E-value=15 Score=32.97 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.-++..+.+|++.||+| ++-....+.. +.......+.|+.+.+.|+++||++.|=.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 344566789999999996 3321111110 0111224577888999999999999987775
No 119
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=60.57 E-value=29 Score=31.61 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=55.8
Q ss_pred ChhHHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccc-cCCCC----C-------CCCccchHHHHHHHHHHHHHCCC
Q 024471 156 KAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMA-SDPTP----P-------APYVGGSLRALDNAFTWAGYAFF 223 (267)
Q Consensus 156 ~a~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~-~d~~~----~-------~P~~~g~l~~LD~av~wA~k~GL 223 (267)
.....+...|..|+.++....+..-|.-.+++.-+...+ .+... . .....++++-|++.++.|++.+.
T Consensus 135 ~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~ 214 (296)
T cd00842 135 WLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGE 214 (296)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 334566778888898887777777787776643333321 12110 0 01113589999999999999999
Q ss_pred cEEEEcCCCCCCCCC
Q 024471 224 PVPSDITISVTTSQD 238 (267)
Q Consensus 224 ~VILDLH~~aPG~QN 238 (267)
+|+|=+|. .||...
T Consensus 215 ~v~I~~Hi-Pp~~~~ 228 (296)
T cd00842 215 KVWIIGHI-PPGVNS 228 (296)
T ss_pred eEEEEecc-CCCCcc
Confidence 99999999 888653
No 120
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=60.47 E-value=57 Score=30.15 Aligned_cols=152 Identities=11% Similarity=0.136 Sum_probs=83.6
Q ss_pred CCeEEEEEeCCeEEEee-cCCCCceEEEccCCCCCCCceEEEeCC--CCCcceEEEcCCCceeeeeccceeeeeccCCCC
Q 024471 49 ETNFHFRVFNKQFIGLD-TNGNGIDIVAESNTPRSSETFEIVRNS--NDLSRVRIKAPNGFFLQAKTEELVTADYEGATS 125 (267)
Q Consensus 49 ~~~f~~r~~~~~f~~~~-~~g~~~~v~A~~~~p~~~e~F~ivr~~--~~~~~v~ika~nG~~lqa~~~~~vta~~~~~e~ 125 (267)
-+..+|.|..|+-|||- .|| .+-..+|.+|-|- -|.++|.|..-|=.-+-.-.--.+...|-.
T Consensus 20 v~~Vsl~v~~GEiVGLLGPNG-----------AGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLp--- 85 (243)
T COG1137 20 VNDVSLEVNSGEIVGLLGPNG-----------AGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLP--- 85 (243)
T ss_pred eeeeeEEEcCCcEEEEECCCC-----------CCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccc---
Confidence 34578888899999984 333 5566779888772 334455543322111111111112222333
Q ss_pred cCCcCcccccccccccccchhhhhhccCCCChhHHHHhhh-hcccC--HHHH-HHHHhCCCCEEEeecccccccCC----
Q 024471 126 WGDDDPSVFEMTIAGRMQGEFQVTNGYGPQKAPQVMRKHW-STYIV--EDDF-KFIAGNGLNAVRIPVGWWMASDP---- 197 (267)
Q Consensus 126 W~~i~Ps~F~~~~~~~~~dE~tl~~~~G~~~a~~~l~~Hw-~tyIT--e~Df-~~Ia~~G~N~VRIPvgyw~~~d~---- 197 (267)
-.||+|....+. + .-..+|+-+. +.... ++.. +.+.+..+.++|=.-++-.-+..
T Consensus 86 ---QE~SIFr~LtV~---d-----------Ni~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~ 148 (243)
T COG1137 86 ---QEASIFRKLTVE---D-----------NIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV 148 (243)
T ss_pred ---ccchHhhcCcHH---H-----------HHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH
Confidence 337788754321 1 1122232222 11111 1112 35677788888877766432110
Q ss_pred --------C-----CCCCCcc---chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 198 --------T-----PPAPYVG---GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 198 --------~-----~~~P~~~---g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
. -.+||.+ -+..-+.++|.-.+..||.|+|-=|.
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN 198 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN 198 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence 1 1367743 26788999999999999999999887
No 121
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=59.84 E-value=64 Score=24.71 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCeEEEEE-eCCeEEEeecCCC--CceEEEccCCCCCCCceEEEeCCCCCcceEEEc-CCCceeeeec
Q 024471 49 ETNFHFRV-FNKQFIGLDTNGN--GIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKT 112 (267)
Q Consensus 49 ~~~f~~r~-~~~~f~~~~~~g~--~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika-~nG~~lqa~~ 112 (267)
+..|.|+- ..++++.+.+... +..|+.-.....+++.|.|++-. ++ ..+|+. ..|+.|-+.+
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~-~g-~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVG-DG-YYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEEST-TS-EEEEEETSTTEEEEEGG
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEec-CC-eEEEEECCCCcEEEECC
Confidence 45699996 5899999976321 23466655555889999999965 33 477777 4477777653
No 122
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=59.43 E-value=54 Score=26.86 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEc-CCCceeeeeccceeee
Q 024471 58 NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTA 118 (267)
Q Consensus 58 ~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika-~nG~~lqa~~~~~vta 118 (267)
++.|+-+.. +|.|.+|.+.......|+|+--. .+.|.||. ..++||-....+.|.+
T Consensus 7 ~~~~L~I~~---dG~V~Gt~~~~~~~s~l~~~s~~--~g~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 7 TGFHLQILP---DGTVDGTRDDSSSYTILERIAVA--VGVVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred CCeEEEEcC---CCcEecccCCCCCCceEEEEECC--CCEEEEEEcccceEEEECCCCCEEE
Confidence 378888886 55799998877677888887743 57999999 6899999888776664
No 123
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=59.41 E-value=19 Score=32.21 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++-++..+.+|...|+++.|+... +. ..+.......+.|+++.+.|+++|+.+.|=.|.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~~-~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTPA-GF-SSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 455677789999999998876421 10 001111224577788899999999998887655
No 124
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.74 E-value=15 Score=33.10 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.-++..+.+|...|+++- +....+.. .+.......+.|+.+.+.|+++|+.+.|-.|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQA-NNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-cccccccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 4557888999999999863 21110110 00011124677888999999999999888875
No 125
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=58.49 E-value=19 Score=34.28 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=21.1
Q ss_pred cccCHHHHHHHHhCCCCEEEeecc
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVG 190 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvg 190 (267)
+.+|++.++.|++.|++.|.|.+.
T Consensus 100 ~ll~~~~~~~L~~~g~~~v~iSld 123 (378)
T PRK05301 100 VGLTEARLAALKDAGLDHIQLSFQ 123 (378)
T ss_pred ccCCHHHHHHHHHcCCCEEEEEec
Confidence 358899999999999999999984
No 126
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=57.25 E-value=20 Score=29.48 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCC-CcEEEE
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAF-FPVPSD 228 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~G-L~VILD 228 (267)
..++++.++.|++.|+..|.|-+.-.. +...+.. ....++.+.++++.++++| +.|-+.
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGS---DEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCC---HHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEe
Confidence 467899999999999998888774321 1000000 1125688888888999998 555443
No 127
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=56.45 E-value=1.3e+02 Score=25.77 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=54.9
Q ss_pred cccceEEE-----EEEeehhhhhhhccCCCcceEeEEee-----CCeEEEEEeCCeEEEeecCCC----Cc-e-EEEccC
Q 024471 15 SLNRLLSA-----NIFVQRTVEAQLLLQTGHLHQLWRIN-----ETNFHFRVFNKQFIGLDTNGN----GI-D-IVAESN 78 (267)
Q Consensus 15 ~~~~~~s~-----~~~~nr~~~~~~~~s~wetf~lwr~~-----~~~f~~r~~~~~f~~~~~~g~----~~-~-v~A~~~ 78 (267)
...+||-| .|.-.|.-+ | -. -.|+|- ..-.-||---|.|+++.+..- .| . +|....
T Consensus 15 ~~~kYL~ADeDg~~Vs~~~~~~-----s-~n--a~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~~~ 86 (142)
T PF04601_consen 15 HHGKYLHADEDGEGVSQDRRGA-----S-LN--AAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTDPD 86 (142)
T ss_pred cCCCEEEEcCCCCeEEECCCCC-----C-Cc--ceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEecCCc
Confidence 56788887 577776654 2 11 234442 233666767788888764211 11 1 444444
Q ss_pred CCCCCCceEEEeCCCCCcceEEEcCCCceeeeecc
Q 024471 79 TPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTE 113 (267)
Q Consensus 79 ~p~~~e~F~ivr~~~~~~~v~ika~nG~~lqa~~~ 113 (267)
.+..+--.+.||.. ..|.||..+|+||.|++.
T Consensus 87 ~~d~~~~Wepvr~g---~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 87 RLDSSVEWEPVRDG---FYVKLRHRSGRYLRANGG 118 (142)
T ss_pred cCCCCceEEEecCC---CEEEEEecCCceEEcCCC
Confidence 44455556788753 789999999999999875
No 128
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=56.40 E-value=17 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCCCCCCC
Q 024471 211 LDNAFTWAGYAFFPVPSDITISVTTSQDL 239 (267)
Q Consensus 211 LD~av~wA~k~GL~VILDLH~~aPG~QN~ 239 (267)
|+++++.-+++||.|+||+=. .|.|++.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~-~P~S~~~ 29 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL-WPRSRKP 29 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC-CCCCCCC
Confidence 678889999999999999999 9998854
No 129
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.32 E-value=16 Score=36.50 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.9
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEE-cCCCCCCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD-ITISVTTS 236 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILD-LH~~aPG~ 236 (267)
+++-++.++++|++.|=| |-....+.. -+-+. ....+...+++++++++||.+.++ |-+ .||-
T Consensus 286 d~ell~~l~~aG~~~v~i--GiES~~~~~-L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G-~P~e 350 (497)
T TIGR02026 286 DADILHLYRRAGLVHISL--GTEAAAQAT-LDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG-FENE 350 (497)
T ss_pred CHHHHHHHHHhCCcEEEE--ccccCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE-CCCC
Confidence 567788999999975544 444321110 00011 125677889999999999998887 456 6764
No 130
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=55.79 E-value=21 Score=31.66 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 172 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++..+.+|...||++.|.... +. +.+.......+.|.++.+.|+++||.+.|=.|.
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~-~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPA-GV-SPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 34677889999999998765311 10 000011123466888999999999999998775
No 131
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=55.59 E-value=15 Score=33.36 Aligned_cols=58 Identities=17% Similarity=0.034 Sum_probs=40.1
Q ss_pred CHHHHHHHHhCCCCEEEeecccccc--cCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMA--SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~--~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.++|++...+.|+..|||.++-... .... .--....++.+.++++.|++.|++|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKL--GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 5889999999999999998732211 0000 00012367888899999999999987654
No 132
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=55.06 E-value=37 Score=33.04 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=50.2
Q ss_pred hhHHHHhhhh-------cccCHHHHHHHHhCCCCEEEeecccccccCC--CCCCCCccchHHHHHHHHHHHHHCCCcEEE
Q 024471 157 APQVMRKHWS-------TYIVEDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 157 a~~~l~~Hw~-------tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~--~~~~P~~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
..+.++++|. +=.|.++.+.+.++|.+.||+-||-=..... ..+-++ .++..|-++.+.|+++++.||.
T Consensus 140 ~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~--pqltAv~~~a~aa~~~~v~VIa 217 (343)
T TIGR01305 140 FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGY--PQLSAVIECADAAHGLKGHIIS 217 (343)
T ss_pred HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCc--CHHHHHHHHHHHhccCCCeEEE
Confidence 3456666663 2368999999999999999999864221111 111122 2799999999999999999999
Q ss_pred E
Q 024471 228 D 228 (267)
Q Consensus 228 D 228 (267)
|
T Consensus 218 D 218 (343)
T TIGR01305 218 D 218 (343)
T ss_pred c
Confidence 8
No 133
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=54.70 E-value=38 Score=32.42 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=37.7
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+.+|++...+.|+..|||.+..- ..+.+.+.+++|++.|+.|.+-+=.
T Consensus 89 ~~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 89 GTVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred ccHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 367899999999999999987211 1245788899999999988876543
No 134
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=53.47 E-value=20 Score=33.15 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=43.6
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccc-cCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMA-SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~-~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..++|++...+.|+..|+|+++=-.. ....- .--....++.+.+++++|+++|++|.+.+=.
T Consensus 74 ~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 74 PNLRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 36889999999999999999843210 00000 0011236788889999999999999877654
No 135
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=53.26 E-value=36 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHHHHhCCCCEEEeecc----cccccCCCC-----C---CCCcc-c--hHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 174 FKFIAGNGLNAVRIPVG----WWMASDPTP-----P---APYVG-G--SLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvg----yw~~~d~~~-----~---~P~~~-g--~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
++.|+..++|.+-+=+. |-.-....| + .++.. + ..+-+++++++|+++||.||--+= .||
T Consensus 22 id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD--~PG 96 (303)
T cd02742 22 IDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEID--MPG 96 (303)
T ss_pred HHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEecc--chH
Confidence 45678999999966653 221101000 0 01111 1 578999999999999999998774 355
No 136
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=52.54 E-value=35 Score=32.07 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++-|+.++++|+.-|.|=+ . +. ..+...+..+++++-|.+|.| +||+|+
T Consensus 109 ~~~f~~~~~~Gv~GvKidF--~---~~-----d~Q~~v~~y~~i~~~AA~~~L--mvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF--M---DR-----DDQEMVNWYEDILEDAAEYKL--MVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT---EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCc--C---CC-----CCHHHHHHHHHHHHHHHHcCc--EEEecC
Confidence 8889999999999998744 2 21 123367889999999999965 889999
No 137
>PRK07094 biotin synthase; Provisional
Probab=52.28 E-value=17 Score=33.75 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=36.7
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCC---CCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~---~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
.++++++.|+++|++.|= ++.... ++. .-.| ...++...+++++++++||.|-.+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~--~glEs~-~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYL--LRHETA-DKELYAKLHP--GMSFENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEE--eccccC-CHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecce
Confidence 679999999999999765 443322 110 0011 236777888999999999876444
No 138
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=52.25 E-value=48 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=35.5
Q ss_pred cccCHHHHHHHHhCC-CCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEE
Q 024471 167 TYIVEDDFKFIAGNG-LNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 167 tyITe~Df~~Ia~~G-~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
+..+..||+.+-+.| ++.|++=+.+ -|.+....++.++|+++|+.+.+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 456778888876654 6777764422 24788899999999999999876
No 139
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=52.24 E-value=34 Score=31.69 Aligned_cols=56 Identities=13% Similarity=-0.158 Sum_probs=36.8
Q ss_pred HHHhCCCCEEEeecccc-cccC-------CCCCCCCcc-chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 176 FIAGNGLNAVRIPVGWW-MASD-------PTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 176 ~Ia~~G~N~VRIPvgyw-~~~d-------~~~~~P~~~-g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+..|+..+.+|+.-- ...+ .+|.+|--. -..+.+.+++++|+++|+.||+|=.-
T Consensus 102 ~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y 166 (330)
T PRK05664 102 AWRRAGHQVRELDEAEVEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAF 166 (330)
T ss_pred HHHHcCCeEEEechhhHhhhhcCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCc
Confidence 44567888888887311 0000 123344211 16788999999999999999999665
No 140
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.12 E-value=44 Score=32.01 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=37.0
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+|++...+.|+..|||.+.-- ..+.+.+.+++|++.|+.|...+=.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 67899999999999999987311 1234678899999999998766543
No 141
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.11 E-value=18 Score=34.77 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=42.5
Q ss_pred cCHHHHHHHHhCCCCEEEeecccc--cccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw--~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..++|++...+.|+..|||.++-. +..... ..-....++.+.++++.|+++|++|.+.+=.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~--~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKL--KKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 358999999999999999966422 110000 0011236888889999999999999887633
No 142
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.09 E-value=57 Score=30.32 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHhCCCCEEEeecccccccCC-CCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 177 IAGNGLNAVRIPVGWWMASDP-TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 177 Ia~~G~N~VRIPvgyw~~~d~-~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+++.|++.+|=-. ++| +.+.-|.+-+++-|+.+.+.|+++||.++-++|.
T Consensus 38 ~~~~g~~~~r~g~-----~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 38 AKKLGYNYFRGGA-----YKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred HHHcCCCEEEecc-----cCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 8899999998754 223 2111233336789999999999999999999998
No 143
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.78 E-value=23 Score=33.15 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=41.4
Q ss_pred CHHHHHHHHhCCCCEEEeecccc--cccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw--~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
...|++...+.|++.|||.++=- +..... .--....++.+.++|++|+++|++|...+=
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~--~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI--NCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 68899999999999999987421 110000 011123688899999999999999975443
No 144
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=50.61 E-value=82 Score=25.92 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=43.5
Q ss_pred eCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEc-CCCceeeeeccceeeee
Q 024471 57 FNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTAD 119 (267)
Q Consensus 57 ~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika-~nG~~lqa~~~~~vta~ 119 (267)
.++.|+-+.. +|.|.+|.+.......|+++--. .+.|.||. ..++||-....+.|.+.
T Consensus 10 ~~~~~L~I~~---~G~V~Gt~~~~~~~~ile~~s~~--~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 10 RNGQHLQILP---DGTVDGTRDESSSFTILEIIAVA--VGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred CCCeEEEEcC---CceEecccCCCCcceEEEEEecc--CCEEEEEEcccceEEEECCCCCEEEc
Confidence 3557888876 55788888777777778777632 37899999 77999998887777643
No 145
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=50.28 E-value=28 Score=32.84 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=36.7
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.++++.++.|++.|++.|.|.+.=.. +...+... .+.++.+-++++.++++|+.|.|.+
T Consensus 91 ~ll~~e~~~~L~~~g~~~v~iSldg~~---~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 91 VGLTEARLDALADAGLDHVQLSFQGVD---EALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred ccCCHHHHHHHHhCCCCEEEEeCcCCC---HHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEE
Confidence 357899999999999999999883210 00000011 1356666666666677776665543
No 146
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=50.22 E-value=53 Score=31.38 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
..+-++.+|++|+++||.||.-+= .||-
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID--~PGH 95 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEID--TPGH 95 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc--Cchh
Confidence 578999999999999999998873 5763
No 147
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=49.50 E-value=19 Score=35.36 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCCCCCCCCCCCCCCCCCC
Q 024471 210 ALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVHNTP 250 (267)
Q Consensus 210 ~LD~av~wA~k~GL~VILDLH~~aPG~QN~~~hsG~~~~~~ 250 (267)
-+|.+.+.|++|||.||-|-+. +-|+.=..-..|..+.-.
T Consensus 137 dm~~i~~la~~~~l~vIEDaAq-a~Ga~y~gk~vGt~Gd~~ 176 (374)
T COG0399 137 DMDAIMALAKRHGLPVIEDAAQ-AHGATYKGKKVGSFGDIG 176 (374)
T ss_pred CHHHHHHHHHHcCCeEEEEcch-hccCeecCcccccccceE
Confidence 3778899999999999999999 999876666777665433
No 148
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.18 E-value=33 Score=33.20 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=44.8
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-|.+-..+.|++.|-+.|.|=+ ||.. | . +|-+ ....++|.++.+.|++.+|.-+|-+=.
T Consensus 107 ll~~ws~~rike~GadavK~Ll-yy~p-D--~-~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 107 CLVEWSVKRLKEAGADAVKFLL-YYDV-D--G-DEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred ccchhhHHHHHHhCCCeEEEEE-EECC-C--C-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3445567899999999999988 4422 1 1 1322 237899999999999999999998776
No 149
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=48.50 E-value=14 Score=29.87 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.8
Q ss_pred ccCHHHHHHHHhCCCCEE
Q 024471 168 YIVEDDFKFIAGNGLNAV 185 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~V 185 (267)
=|+++||+.|++.||.+|
T Consensus 14 Q~~~~d~~~la~~GfktV 31 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTV 31 (110)
T ss_dssp S--HHHHHHHHHCT--EE
T ss_pred CCCHHHHHHHHHCCCcEE
Confidence 378999999999999998
No 150
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=47.65 E-value=48 Score=30.62 Aligned_cols=49 Identities=24% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++-++.+++.||++|=|.-|.-.+ ..+...++|+.++++|++|+--++.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i------------~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEI------------SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCC------------CHHHHHHHHHHHHhCCCeEeccccc
Confidence 556679999999999887665432 3456677888888888888876555
No 151
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=47.49 E-value=26 Score=33.97 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=42.0
Q ss_pred CHHHHHHHHhCCCCEEEeecccccc-cCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMA-SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~-~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.++|++...+.|+..|||.++-... ....- ..-....++.+.++++.|++.|+.|.+..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4889999999999999998753321 00000 01123478889999999999999998863
No 152
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=47.49 E-value=16 Score=34.21 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=33.4
Q ss_pred cccCHHHHHHH-HhCCCCEEEeecccccccCCCC---CCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 167 TYIVEDDFKFI-AGNGLNAVRIPVGWWMASDPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 167 tyITe~Df~~I-a~~G~N~VRIPvgyw~~~d~~~---~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
-.+|.+|++.. ...|....++++=+- ..++. +.|| +++.|+.+.++|++|||+|.+|=-
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~l--e~t~~~~GG~~~---s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSL--ENTTELAGGTVY---SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEE--ESSBTTTTSB------HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEE--EecCcCCCCeeC---CHHHHHHHHHHHHhCceEEEEehh
Confidence 45677777644 444543333333221 11211 2344 789999999999999999999954
No 153
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=47.21 E-value=33 Score=33.17 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+-..+.|+++|-+.|.|=+ ||.. | . +|-+ ....++|.++.+.|++.+|.-+|-+=.
T Consensus 109 ~~s~~rike~GadavK~Ll-yy~p-D--~-~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 109 EWSAKRLKEQGANAVKFLL-YYDV-D--D-AEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred cccHHHHHHhCCCeEEEEE-EeCC-C--C-ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4457899999999999988 4422 1 1 1222 237899999999999999999998766
No 154
>PLN03244 alpha-amylase; Provisional
Probab=47.18 E-value=18 Score=39.02 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEc
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDL 229 (267)
|..+-|+++|+.|.++||.||||+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368889999999999999999995
No 155
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=47.14 E-value=50 Score=30.56 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=35.3
Q ss_pred HHHhCCCCEEEeecccccc----c---C------CCCCCCCcc-chHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 176 FIAGNGLNAVRIPVGWWMA----S---D------PTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 176 ~Ia~~G~N~VRIPvgyw~~----~---d------~~~~~P~~~-g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+..|...+.+|+.-+.. . . .+|.+|--. -..+.+.+++++|+++|+.||+|=-
T Consensus 95 ~~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~ 163 (332)
T PRK06425 95 YAFTHGIRISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEA 163 (332)
T ss_pred HHHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecc
Confidence 3456688888888742111 0 0 023333211 1688999999999999999999954
No 156
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=47.05 E-value=36 Score=30.69 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred hhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEE
Q 024471 164 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 164 Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
.....|||+|++.+...|...++||=+=- .. |. |-++|+.+||.|++
T Consensus 160 ~~KklITe~dl~~l~~~g~~~i~v~k~sI--IT-----pL----------A~Dyak~~~I~I~~ 206 (207)
T TIGR02536 160 NKKKLITEKDLKKLTKNGVSEIILSKKSI--LT-----PL----------AKDYAKEKNINIKL 206 (207)
T ss_pred cccceecHHHHHHHHhCCCcEEEeCCCCC--cc-----hh----------HHHHHHHcCCeEee
Confidence 56679999999999999999999987522 22 43 77899999999986
No 157
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=46.42 E-value=30 Score=32.00 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=36.7
Q ss_pred HHHHhCCCCEEEeecccccccCC-------CCC-------CC-CccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDP-------TPP-------AP-YVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~-------~~~-------~P-~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.++..|+..++||+......+. .+. .| ...|...-++++.++|+++|+.||+|-=.
T Consensus 106 ~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~ 177 (353)
T TIGR03235 106 RALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQ 177 (353)
T ss_pred HHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchh
Confidence 44566799999998863211111 000 01 11345556899999999999999999854
No 158
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=45.60 E-value=25 Score=33.86 Aligned_cols=59 Identities=17% Similarity=0.038 Sum_probs=40.7
Q ss_pred CHHHHHHHHhCCCCEEEeecccccc-cCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMA-SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~-~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.++|++...+.|+..|||.++-... .... ..--....++.+.++++.|+++|+.|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~-~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAK-LRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHH-hCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 5899999999999999998853211 0000 000012367888899999999999988753
No 159
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.67 E-value=42 Score=30.01 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 172 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++.-+.+|...|+++-+.-.. .. ..+.......+.|+++.+.|+++||++.|--|.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~-~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGY-LT-PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 44677789999999996542211 11 111122335678999999999999998888775
No 160
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=44.32 E-value=29 Score=32.44 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=40.3
Q ss_pred hcccCHHHHHHHH---hCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCcEEEEcC-CCCCC
Q 024471 166 STYIVEDDFKFIA---GNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDIT-ISVTT 235 (267)
Q Consensus 166 ~tyITe~Df~~Ia---~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~VILDLH-~~aPG 235 (267)
-..++++.++.|+ ++|++ +||-+|-..+.+..- .-. .....+.+.++++.++++||.|.+|+= + .||
T Consensus 118 pd~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~L-~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~G-lPg 189 (302)
T TIGR01212 118 PDCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKTL-KKINRGHDFACYVDAVKRARKRGIKVCSHVILG-LPG 189 (302)
T ss_pred CCcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHHH-HHHcCcChHHHHHHHHHHHHHcCCEEEEeEEEC-CCC
Confidence 3466777666665 55886 556555554321100 000 012567788999999999999887643 4 555
No 161
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.28 E-value=74 Score=29.80 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCCCCCcc---c--hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG---G--SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~---g--~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-++.|+..|+|.+=|=+.- .+ +.+..|.+. + ..+.+++++++|+++||.||--+-.
T Consensus 22 ~id~ma~~k~N~l~lhl~D-~f--~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~ 82 (301)
T cd06565 22 LLRLLALLGANGLLLYYED-TF--PYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQT 82 (301)
T ss_pred HHHHHHHcCCCEEEEEEec-ce--ecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCC
Confidence 3567899999999765421 00 111223221 2 5789999999999999999987643
No 162
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.27 E-value=52 Score=31.00 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
..+-+++++++|+++||.||--+= +||-
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID--~PGH 107 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEID--SPGH 107 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCC--CcHH
Confidence 578899999999999999997663 4663
No 163
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.07 E-value=74 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=35.7
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+|++...+.|++.|||.+.-- ....+.+++++|++.|+.|.+.+
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEE
Confidence 46889999999999999966211 12456778899999999888776
No 164
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=43.98 E-value=45 Score=31.79 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCC------CCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTP------PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~------~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+-++++++.|+|+ |.-+-...+ -+||....++.|+++++.|++.|+..+.-||-
T Consensus 18 ~~l~~f~~~~kmN~------YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 18 LDLIRFLGRYKMNT------YIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHHTT--E------EEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHHcCCce------EEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 34578899999996 331111111 15666678999999999999999999999997
No 165
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.89 E-value=47 Score=32.11 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=43.3
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+-..+.|+++|-+.|.|=+ ||.. | . +|-+ ....++|.++.+.|++.+|.-+|-+=.
T Consensus 107 ~~wS~~rike~GadavK~Ll-yy~p-D--~-~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 107 DDWSAKRIKEEGADAVKFLL-YYDV-D--E-PDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred chhhHHHHHHhCCCeEEEEE-EECC-C--C-CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 34447899999999999988 4422 1 1 1222 237899999999999999999998766
No 166
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=43.70 E-value=28 Score=32.41 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCCEEEeeccc--ccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgy--w~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+++...+.|+..|+|.++= .+..... ..-....++.+.++++.|+++|++|.+.+=.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~--~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQL--RKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHH--CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 568999999999999998732 2111100 0112347899999999999999999987753
No 167
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=43.21 E-value=28 Score=31.39 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 172 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++..+.+|+..|++..+.... . +.+.......+.|.++++.|+++||++.|=-|.
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~~-~--~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYLG-Q--SKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCCC-C--CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 34566788899999997765421 0 001111224677778888888888888887776
No 168
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=42.85 E-value=43 Score=31.29 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
|...-++++.++|+++|+.|++|-.. ..|.
T Consensus 150 G~~~~~~~I~~l~~~~g~~vivD~~~-~~g~ 179 (379)
T TIGR03402 150 GTIFPIEEIGEIAKERGALFHTDAVQ-AVGK 179 (379)
T ss_pred eecccHHHHHHHHHHcCCEEEEECcc-cccc
Confidence 44555788899999999999999887 5553
No 169
>PRK09389 (R)-citramalate synthase; Provisional
Probab=42.17 E-value=33 Score=34.61 Aligned_cols=61 Identities=13% Similarity=-0.080 Sum_probs=43.2
Q ss_pred CHHHHHHHHhCCCCEEEeeccccccc-CCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMAS-DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~-d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++|++...+.|...|+|.++-+... ...- .--....++.+.+++++|+++|+.|.+++=.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKL-KKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 38899999999999999988654221 0000 0111236888888999999999999987643
No 170
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.17 E-value=46 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=34.9
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-++-+++++++||++|=|.-|.-.+ ..+...++|+.|++.|++|+--+..
T Consensus 86 ~~~yl~~~k~lGf~~IEiSdGti~l------------~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISDGTIDL------------PEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHHcCCCEEEecCCceeC------------CHHHHHHHHHHHHHCCCEEeecccC
Confidence 3778899999999999887655422 3455667888899999999877665
No 171
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.88 E-value=35 Score=33.05 Aligned_cols=60 Identities=15% Similarity=0.007 Sum_probs=42.5
Q ss_pred CHHHHHHHHhCCCCEEEeeccccc-ccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWM-ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~-~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
.++|++...+.|+..|+|.++=-. +....- .--....++.+.++|+.|+++|++|.+.+=
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 799999999999999999874210 100000 011234788899999999999999975553
No 172
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=41.83 E-value=91 Score=28.36 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=42.9
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.++++..+.+++.|++.|.|.+.-.. +...+++. .+.++..-+++..+.+.|+.+.+..
T Consensus 104 ~~~~~~~~~~l~~~g~~~v~iSid~~~---~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~ 165 (347)
T COG0535 104 TLLTEEVLEKLKEAGLDYVSISLDGLD---PETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINT 165 (347)
T ss_pred ccCCHHHHHHHHhcCCcEEEEEecCCC---hhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEE
Confidence 347889999999999999999985331 11113443 3578888888888889888644443
No 173
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=41.56 E-value=24 Score=31.44 Aligned_cols=53 Identities=6% Similarity=-0.036 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
..+.+...++|.+.|-+-+.|-..... .....++.+.++++-|+++||+|||-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455778889999999999876543221 12337889999999999999999997
No 174
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=41.04 E-value=26 Score=33.03 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPV 246 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~~~hsG~~ 246 (267)
...-++.+.++|+++||.||-|.-. +.|+.-..-..|..
T Consensus 125 ~~~d~~~i~~~~~~~~i~lIeD~a~-a~g~~~~g~~~G~~ 163 (363)
T PF01041_consen 125 NPADMDAIRAIARKHGIPLIEDAAQ-AFGARYKGRPVGSF 163 (363)
T ss_dssp B---HHHHHHHHHHTT-EEEEE-TT-TTT-EETTEETTSS
T ss_pred CcccHHHHHHHHHHcCCcEEEcccc-ccCceeCCEeccCC
Confidence 3446899999999999999999998 88875433334443
No 175
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.71 E-value=1e+02 Score=28.34 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 208 LRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.+.|.++++.|+++|+-+++|+|.
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 367999999999999999999998
No 176
>PRK06256 biotin synthase; Validated
Probab=40.70 E-value=34 Score=32.01 Aligned_cols=57 Identities=9% Similarity=-0.058 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILD 228 (267)
.++++.++.|+++|++.| +++... ++.-.+-.. ...++..-++++.|++.||.|...
T Consensus 149 ~l~~e~l~~LkeaG~~~v--~~~lEt--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRY--NHNLET--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred cCCHHHHHHHHHhCCCEE--ecCCcc--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC
Confidence 489999999999999865 443322 110000011 136777778999999999986544
No 177
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.18 E-value=80 Score=29.70 Aligned_cols=60 Identities=15% Similarity=-0.005 Sum_probs=37.8
Q ss_pred HHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVT 234 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aP 234 (267)
+++-+++|+..|=|=-||.........++.....-.-|.+++++|++.|++|+|=.|. ..
T Consensus 38 IDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~-~~ 97 (273)
T PF10566_consen 38 IDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS-ET 97 (273)
T ss_dssp HHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC-CH
T ss_pred HHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC-Cc
Confidence 5777899999999977776422111112222223466889999999999999999998 44
No 178
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=40.06 E-value=31 Score=31.76 Aligned_cols=25 Identities=20% Similarity=0.004 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 166 ~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 166 SLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccccccchhhhhcccccceeeeece
Confidence 6799999999999999999999776
No 179
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=39.90 E-value=24 Score=36.10 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCC---CCCCc-cch-HHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 159 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP---PAPYV-GGS-LRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 159 ~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~---~~P~~-~g~-l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-.+=.||..-.-.+|++..+.+|++.+||=| .|..+ .+-+. .++ ..|++..++-|...+|||+|-+=.
T Consensus 17 ikmw~~~~~~ei~~dle~a~~vg~k~lR~fi-----LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitliv 89 (587)
T COG3934 17 IKMWPAIGNREIKADLEPAGFVGVKDLRLFI-----LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIV 89 (587)
T ss_pred hhHHHHhhhhhhhcccccccCccceeEEEEE-----ecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEee
Confidence 3444566544446788889999999999953 23211 01122 234 999999999999999999987654
No 180
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=39.43 E-value=38 Score=33.33 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.|.+++++|++|+|+||.|-.-
T Consensus 218 s~e~l~~l~~~~~~~~i~lI~DEiY 242 (447)
T PLN02607 218 QRSVLEDILDFVVRKNIHLVSDEIY 242 (447)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccc
Confidence 5788999999999999999999754
No 181
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=39.36 E-value=30 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||+|=--
T Consensus 197 s~~~~~~l~~~a~~~~~~iI~De~Y 221 (416)
T PRK09440 197 TDEELEKLDALARQHNIPLLIDNAY 221 (416)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeCCc
Confidence 6889999999999999999999643
No 182
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.35 E-value=96 Score=31.33 Aligned_cols=63 Identities=13% Similarity=-0.030 Sum_probs=44.7
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-|-+..+.+.++|++.||+=||-=...........-..++..+.++.+.|+++|+.||-|=+-
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi 339 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV 339 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 477888899999999999988652211111111111138999999999999999999988543
No 183
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=39.17 E-value=52 Score=30.60 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCEEEeecc----cccccCCCC-------CCCCc---cchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCC
Q 024471 173 DFKFIAGNGLNAVRIPVG----WWMASDPTP-------PAPYV---GGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 237 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvg----yw~~~d~~~-------~~P~~---~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~Q 237 (267)
-++.|+..++|.+=+-+. |-.-....| ..+.. .-..+-|+++|++|+++||.||.-+= +||-.
T Consensus 23 ~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid--~PGH~ 99 (351)
T PF00728_consen 23 LIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEID--TPGHA 99 (351)
T ss_dssp HHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEE--ESSS-
T ss_pred HHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeecc--CchHH
Confidence 355679999999976663 111111111 00100 01468999999999999999998774 36543
No 184
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=38.76 E-value=55 Score=28.93 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
++.|++.|+... +|| .+|+- .|+.+ ...+++.+.++|++.||.||.+-
T Consensus 15 ~~~L~~~g~~vt----~~f--yNPNI-hP~~E-y~~R~~~~~~~~~~~~i~~i~~~ 62 (176)
T PF02677_consen 15 LERLREEGFDVT----GYF--YNPNI-HPYEE-YERRLEELKRFAEKLGIPLIEGD 62 (176)
T ss_pred HHHHHHCCCCeE----EEE--eCCCC-CcHHH-HHHHHHHHHHHHHHcCCCEEecC
Confidence 567788888753 555 34432 35543 78899999999999999999864
No 185
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.68 E-value=57 Score=31.55 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHHHHhCCCCEEEeecccccccCCCCCCCC-ccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~-~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
.+.++++|.+.|.+=+-|- +. .++- ....++.|.++.+.|+++||-+||=+
T Consensus 112 ve~a~~~GAdAVk~lv~~~----~d-~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR----PD-EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC----CC-cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999988333 21 0121 22378899999999999999999973
No 186
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=38.66 E-value=37 Score=33.53 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=45.6
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCc-EEEEc-CCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 235 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~-VILDL-H~~aPG 235 (267)
+.++.+-|+.+++.|+| ||.+|=..+.+..-..--.....+....+++++++.|+. |-||| ++ .||
T Consensus 133 ~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg-lP~ 200 (416)
T COG0635 133 GTVEAEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG-LPG 200 (416)
T ss_pred CCCCHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC
Confidence 46788899999999999 999998866321000000012567778899999998875 66886 45 665
No 187
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=38.58 E-value=29 Score=33.14 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..++|++++++|++||+.+|+|=
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DE 225 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDE 225 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 56899999999999999999994
No 188
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=38.55 E-value=45 Score=32.45 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCC--CCCCCcc-----chHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPT--PPAPYVG-----GSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~--~~~P~~~-----g~l~~LD~av~wA~k~GL~VILD 228 (267)
++-|+.||+.|+|++=|-+.--. +..+ ..+|+.. ..+.-+.-+|..|++.|||+|--
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~-G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IAR 143 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDY-GELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIAR 143 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCC-ccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEE
Confidence 56689999999999988773211 0000 1122221 13445667899999999999854
No 189
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=38.41 E-value=1.1e+02 Score=30.29 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=42.4
Q ss_pred cccCHHHHHHHHhCCCCEEEeecc--cccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvg--yw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
+=.|.++.+.+.++|+++|++-++ .-.. ... ....-..++..+.++.+.|+++++.||-|
T Consensus 272 ~v~t~~~a~~l~~aGad~i~vg~g~G~~~~-t~~-~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 272 NVATAEQAKALIDAGADGLRVGIGPGSICT-TRI-VAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred eCCCHHHHHHHHHhCCCEEEECCCCCcCCc-cce-ecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 347899999999999999998763 2211 100 00111126888899999999999999986
No 190
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.31 E-value=48 Score=30.53 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCEEEeeccc--ccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgy--w~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
+.+++.+++.|++.|||.++= .+..... + .-....++.+.++++.|+++|+.|.+.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~-~-~~~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEAL-G-TTLEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 457888999999999997642 1111100 0 011237888899999999999999884
No 191
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=38.22 E-value=17 Score=30.95 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=22.6
Q ss_pred CCChhHHHHhhhhcccCHHHHHHHHhCCCCEEEeeccccccc
Q 024471 154 PQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMAS 195 (267)
Q Consensus 154 ~~~a~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~ 195 (267)
|+.|.++|+.-. +.|++.|++..|-|+||...+
T Consensus 90 P~~A~~iL~~le---------~~L~~~g~eV~raPFGwyK~F 122 (138)
T PF08915_consen 90 PDVAVEILKKLE---------ERLKSRGFEVYRAPFGWYKEF 122 (138)
T ss_dssp HHHHHHHHHHHH---------HHHHHTT-EEEE--TTEEEEE
T ss_pred hHHHHHHHHHHH---------HHHHhCCCeEEEeCCccceeE
Confidence 456777776664 567899999999999997543
No 192
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=38.20 E-value=73 Score=29.76 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCc-EEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP-VPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~-VILDLH~ 231 (267)
++..+.+++.|++.|.|.+.-.. +....-.. .+.++.+-++|+.|++.|+. |-|.+..
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~~~---~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDSLD---PERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEecccCC---HHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 34678899999999888874221 10001111 13677777777777777776 6665544
No 193
>PRK04302 triosephosphate isomerase; Provisional
Probab=38.00 E-value=1.1e+02 Score=27.03 Aligned_cols=52 Identities=8% Similarity=-0.159 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|..|.-.+.+++.|++.|=||-.=.. . .++.+.+.++.|+++||.+|++.|.
T Consensus 72 ~tg~~~~~~l~~~G~~~vii~~ser~-------~-----~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 72 HTGHILPEAVKDAGAVGTLINHSERR-------L-----TLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred chhhhHHHHHHHcCCCEEEEeccccc-------c-----CHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 33444478889999999966542211 1 2344888999999999999999997
No 194
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=37.87 E-value=1.5e+02 Score=25.37 Aligned_cols=58 Identities=16% Similarity=0.371 Sum_probs=37.8
Q ss_pred EEEEEeCCeEEEeecCCCCceEEEccCCCCCCCceEEEeCCCCCcceEEEcCCCceeeee
Q 024471 52 FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAK 111 (267)
Q Consensus 52 f~~r~~~~~f~~~~~~g~~~~v~A~~~~p~~~e~F~ivr~~~~~~~v~ika~nG~~lqa~ 111 (267)
-.||...++|+-++..|. +|.=...-...+....+++=.++..-|+||+.-|+||.+.
T Consensus 10 VRLRS~~~kYL~ADeDg~--~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as 67 (142)
T PF04601_consen 10 VRLRSHHGKYLHADEDGE--GVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAAS 67 (142)
T ss_pred EEEEecCCCEEEEcCCCC--eEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEecc
Confidence 456777889999886332 3444444444555554333333457899999999999874
No 195
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.64 E-value=1.3e+02 Score=27.55 Aligned_cols=57 Identities=18% Similarity=0.069 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
++.++.+++.|.+.|++=+.+-. ..+....+...-..+.|.++++.|+++|+.|.+-
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g~~-~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATGGV-LSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccCCc-CCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 34567778889999999664321 1111111111114688999999999999876643
No 196
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.60 E-value=1.5e+02 Score=28.15 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=38.2
Q ss_pred HHHHHhCCCCEEEeec----ccccccCCCCC-------CCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCC
Q 024471 174 FKFIAGNGLNAVRIPV----GWWMASDPTPP-------APYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 237 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPv----gyw~~~d~~~~-------~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~Q 237 (267)
++.|+..++|.+=+=+ +|.+-....|. ..++ ..+-+..++++|+++||.||--+= +||-.
T Consensus 24 Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y--T~~di~elv~yA~~rgI~vIPEId--~PGH~ 94 (311)
T cd06570 24 LDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY--TQEQIREVVAYARDRGIRVVPEID--VPGHA 94 (311)
T ss_pred HHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc--CHHHHHHHHHHHHHcCCEEEEeec--Cccch
Confidence 4567899999875554 23221111110 1111 578899999999999999998774 46643
No 197
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=37.33 E-value=1e+02 Score=30.93 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCCEEEeecccc--------cccCCCCCCCC--c---cchHHHHHHHHHHH-HHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWW--------MASDPTPPAPY--V---GGSLRALDNAFTWA-GYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw--------~~~d~~~~~P~--~---~g~l~~LD~av~wA-~k~GL~VILDLH~ 231 (267)
++-|+.+++.|+|.|=++=--. ...|....+|- . ...++.|.++|.-+ ++|||.+|.|++-
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 5668999999999997643110 01111111221 1 12578899999877 5899999999954
No 198
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=37.07 E-value=46 Score=28.35 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
..+++.+....++.|+|...+..-. . .......|+.+++.|+++|++||++
T Consensus 159 ~~~~~~l~~l~~~~ikld~~~~~~~------~-~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 159 SSSLEYLASLPPDYIKLDGSLVRDL------S-DEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp CGCHHHHHHHCGSEEEEEHHGHTTT------T-SHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred cchhhhhhhcccccceeeccccccc------c-hhhHHHHHHHHHHHhhcccccccee
Confidence 3456667777777777777655211 1 2336788999999999999999986
No 199
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=36.67 E-value=31 Score=32.36 Aligned_cols=51 Identities=29% Similarity=0.389 Sum_probs=37.3
Q ss_pred hhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 165 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 165 w~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
|+.-+.|.||.+-+.-|+.+|=| .|-..|++++....|+.|...||..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 55555566666666666655533 2455679999999999999999999885
No 200
>PRK14012 cysteine desulfurase; Provisional
Probab=36.39 E-value=79 Score=30.07 Aligned_cols=61 Identities=7% Similarity=-0.106 Sum_probs=38.3
Q ss_pred HHHHhCCCCEEEeecccccccCC-------CCC-------C-CCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDP-------TPP-------A-PYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~-------~~~-------~-P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
..++..|++.+.+|+......++ .+. . ....|...-++++.++|+++|+.||+|--. +-|.
T Consensus 112 ~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~-~~g~ 187 (404)
T PRK14012 112 RQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQ-SVGK 187 (404)
T ss_pred HHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcch-hcCC
Confidence 34456688888888752211111 000 0 011356667899999999999999999876 4443
No 201
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=36.34 E-value=59 Score=35.08 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=43.3
Q ss_pred HHHHHhCCCCEEEee-c---------ccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc---CCCCCCCCCCC
Q 024471 174 FKFIAGNGLNAVRIP-V---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TISVTTSQDLT 240 (267)
Q Consensus 174 f~~Ia~~G~N~VRIP-v---------gyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL---H~~aPG~QN~~ 240 (267)
+.+++++|+.|+=+. | ||-. .|++.-+|-. |+.+-|.+++.-+++.||.+|+|+ |-.+-|++|.+
T Consensus 25 l~yl~~LGIShLY~SPIftA~pGStHGYDV-vD~t~InPeL-GG~egl~rLvaalk~~GlGlI~DIVPNHMav~g~~N~w 102 (889)
T COG3280 25 LDYLADLGISHLYLSPIFTARPGSTHGYDV-VDPTEINPEL-GGEEGLERLVAALKSRGLGLIVDIVPNHMAVGGHENPW 102 (889)
T ss_pred hHHHHhcCchheeccchhhcCCCCCCCccC-CCccccChhh-cChHHHHHHHHHHHhcCCceEEEecccchhcccccChH
Confidence 467899999998652 2 1221 1222223333 478889999999999999999998 43122355654
Q ss_pred CC
Q 024471 241 IM 242 (267)
Q Consensus 241 ~h 242 (267)
.+
T Consensus 103 w~ 104 (889)
T COG3280 103 WW 104 (889)
T ss_pred HH
Confidence 43
No 202
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.01 E-value=41 Score=29.75 Aligned_cols=51 Identities=16% Similarity=-0.054 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++...+.|.+.|=+-+..- .. +. ...++.+.++.+.|+++|+++|||.|.
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~---~~----~~-~~~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVG---SE----EE-REMLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred CHHHHHHCCCCEEEEEEecC---Cc----hH-HHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 36677899999874433211 10 11 236888999999999999999999986
No 203
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=35.85 E-value=35 Score=30.50 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.|.+++++|+++|+.||+|--.
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~ 174 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAY 174 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecch
Confidence 4678889999999999999999844
No 204
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=35.85 E-value=1.3e+02 Score=24.11 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=40.7
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++++++.|++.|+..|.|.+.-..-....... -....++..-++++.+.++|+.|.+.+--
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 79999999999999999888422100000000 01235677777888888889988887765
No 205
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=35.82 E-value=33 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.3
Q ss_pred hHHHHhhhhcccCHHHHHHHHhCCC
Q 024471 158 PQVMRKHWSTYIVEDDFKFIAGNGL 182 (267)
Q Consensus 158 ~~~l~~Hw~tyITe~Df~~Ia~~G~ 182 (267)
.+..++.+.+|=.++||+.|++.|+
T Consensus 44 Kk~YadFYknYD~~k~fe~M~~~G~ 68 (73)
T PF02937_consen 44 KKAYADFYKNYDPMKDFEEMRKAGI 68 (73)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHTT-
T ss_pred HHHHHHHHHccChHHHHHHHHhcCC
Confidence 3457888999999999999999995
No 206
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=35.60 E-value=35 Score=33.71 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||.|=.-
T Consensus 209 s~e~l~~ll~~a~~~~~~iI~DE~Y 233 (468)
T PLN02450 209 TRTELNLLVDFITAKNIHLISDEIY 233 (468)
T ss_pred CHHHHHHHHHHHHHCCcEEEEEccc
Confidence 6789999999999999999999654
No 207
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=35.40 E-value=81 Score=29.54 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=29.1
Q ss_pred HHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHH-HHHHHC-CCcEEEEcCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAF-TWAGYA-FFPVPSDITI 231 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av-~wA~k~-GL~VILDLH~ 231 (267)
+.|.+.|++++-.-.-+ +. ..| .++..+-.+.+ +..++| +|+++||||.
T Consensus 118 ~~Le~~Gi~v~h~~t~~----d~---~~y-~~sY~~Sr~tv~~~l~~~p~i~~~iDiHR 168 (268)
T PF07454_consen 118 QELEKYGIGVIHDKTIH----DY---PSY-NQSYKRSRETVKKALKENPDIKVVIDIHR 168 (268)
T ss_pred HHHHHCCCcEEEeCCCC----Cc---chh-HHHHHHHHHHHHHHHHHCCCceEEEEecC
Confidence 56789999998654411 11 123 23444444444 333445 7899999997
No 208
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=35.37 E-value=1e+02 Score=29.09 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=34.4
Q ss_pred cccCHHHHHHHHhCCCCEEEeeccccc-ccCCCCCCCC--ccchHHHHHHHHHHHHHCCCcEEE
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWM-ASDPTPPAPY--VGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~-~~d~~~~~P~--~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
+.++++-++.+++.|+ .|.|.+.=.. .-+.. .++ ..+.++.+-+.++.++++|+.+.|
T Consensus 102 ~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~--R~~~~g~~~f~~v~~~i~~l~~~~~~~~i 162 (370)
T PRK13758 102 TLIDESWAKFLSENKF-LVGLSMDGPKEIHNLN--RKDCCGLDTFSKVERAAELFKKYKVEFNI 162 (370)
T ss_pred EecCHHHHHHHHHcCc-eEEEeecCCHHHhccc--cCCCCCCccHHHHHHHHHHHHHhCCCceE
Confidence 4678888899999887 8888873211 10110 111 124667777777777776654443
No 209
>PRK08175 aminotransferase; Validated
Probab=35.25 E-value=36 Score=32.29 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+.+++++|++||+.||+|-.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~ 205 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLA 205 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecc
Confidence 688999999999999999999954
No 210
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=35.11 E-value=37 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.089 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.|+++.+.|++|||.||+|--.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEchh
Confidence 5889999999999999999999764
No 211
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=35.08 E-value=40 Score=31.63 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++.|.++++++++.|+.||+|+--
T Consensus 71 G~~~l~~~i~~l~~~g~~VilD~K~ 95 (278)
T PRK00125 71 GLAQLERTIAYLREAGVLVIADAKR 95 (278)
T ss_pred hhhHHHHHHHHHHHCCCcEEEEeec
Confidence 6889999999999999999999843
No 212
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=34.82 E-value=44 Score=30.20 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++.+|++++||+++||+| .-|.
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~ 36 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHT 36 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEE
Confidence 5899999999999999998 3454
No 213
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=34.69 E-value=1.7e+02 Score=24.93 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=35.9
Q ss_pred eCCeEEEeecCCCCceEEEccCCCC----CCCceEEEeCCCCCcceEEEcCC--Cceeeeecccee
Q 024471 57 FNKQFIGLDTNGNGIDIVAESNTPR----SSETFEIVRNSNDLSRVRIKAPN--GFFLQAKTEELV 116 (267)
Q Consensus 57 ~~~~f~~~~~~g~~~~v~A~~~~p~----~~e~F~ivr~~~~~~~v~ika~n--G~~lqa~~~~~v 116 (267)
+.++|+.-.+ ..+.+.+..+... ...+|.|+.|-.+++-|-|...| |.||..+...+.
T Consensus 10 ~~~ryirh~~--~~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~v~ 73 (142)
T PF05270_consen 10 YPDRYIRHRG--SLVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFRVR 73 (142)
T ss_dssp STTEEEEEET--TEEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTEEE
T ss_pred CCCeEEEEcC--ceEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCEEE
Confidence 3578887763 1112333333222 36889999998888899999988 999987655443
No 214
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=34.51 E-value=43 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred HHHHhhhhcccCHHHHHHHHhCCC
Q 024471 159 QVMRKHWSTYIVEDDFKFIAGNGL 182 (267)
Q Consensus 159 ~~l~~Hw~tyITe~Df~~Ia~~G~ 182 (267)
+...+.|.+|=..+||+.|++.|+
T Consensus 43 ~aYadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 43 KAYADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHHHccChHHHHHHHHHcCC
Confidence 357788999999999999999995
No 215
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=34.47 E-value=1e+02 Score=26.31 Aligned_cols=52 Identities=6% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
...+..+....++.|+|...+-.-... + ......|+.+++.|+..|++||..
T Consensus 158 ~~~~~~l~~l~~d~iKld~~~~~~~~~---~---~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 158 YSSLSYLKRLPVDLLKIDKSFVRDLQT---D---PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHHHHHhCCCCeEEECHHHHhhhcc---C---hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 455677777788888887665421110 1 125677899999999999999975
No 216
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=34.45 E-value=88 Score=27.96 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHH-HHC-CCcEEEEcCCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA-GYA-FFPVPSDITIS 232 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA-~k~-GL~VILDLH~~ 232 (267)
+.|.+.|+.++---- .-+ .|-+..+..+..+.++-+ ++| +|+++||||.+
T Consensus 41 ~~Le~~Gi~vihd~t----~~~----~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 41 KELEEKGIGVIHDKT----VHD----GLNYEQSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHCCCeEEEeCC----ccC----CccHHHHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 456777999885433 111 122234566666555433 344 68999999983
No 217
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.36 E-value=94 Score=31.14 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=35.9
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+.++|++...+.|++.|||-+.-- + ...+..++++|+++|+.|.+-+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln---d-----------~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN---D-----------VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC---c-----------HHHHHHHHHHHHHcCCeEEEEE
Confidence 567889999999999999976321 1 1247779999999999876554
No 218
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.33 E-value=1.1e+02 Score=28.82 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCC-cEEEE
Q 024471 172 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFF-PVPSD 228 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL-~VILD 228 (267)
+..+.|++.|++.|.|.+.-- ++...+... .+.++.+-+.++.|+++|+ .|-|+
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~---~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in 160 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTL---RPELFAALTRNGRLERVIAGIDAAKAAGFERIKLN 160 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccC---CHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEE
Confidence 357889999999999988421 110000010 1345556666666666665 44443
No 219
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=34.31 E-value=38 Score=34.19 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
+++.++++-+.|++|||+||+|--. +-|
T Consensus 196 s~~~m~~I~elA~~~Gl~Vi~DaAr-a~g 223 (460)
T PRK13237 196 SMANMRAVRELCDKHGIKVFFDATR-CVE 223 (460)
T ss_pred CHHhHHHHHHHHHHcCCEEEEECcc-hhc
Confidence 4788999999999999999999855 434
No 220
>PRK05942 aspartate aminotransferase; Provisional
Probab=34.21 E-value=37 Score=32.17 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|++||+.||+|-.
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~ 211 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLC 211 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecc
Confidence 578899999999999999999965
No 221
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=33.99 E-value=1e+02 Score=30.01 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=36.7
Q ss_pred cccCHHHHHHHHhCCCCEEEeecc-cccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCcEEE
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVG-WWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvg-yw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~VIL 227 (267)
+-++++-.+++++.|+ .|.|.+. .-..-+. ..+.. .+.++.+-+.|+.++++|+.+-+
T Consensus 111 ~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~--~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 111 TLLTDEWCEFFRENNF-LVGVSIDGPQEFHDE--YRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred EeCCHHHHHHHHHcCe-EEEEEecCCHHHhhh--hcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 5678888899999998 8888883 2111010 01111 24677777777888787776433
No 222
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=33.99 E-value=1.1e+02 Score=30.41 Aligned_cols=57 Identities=18% Similarity=0.046 Sum_probs=38.7
Q ss_pred HHHHHhCCCCEEEeecccccc------------------cCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 174 FKFIAGNGLNAVRIPVGWWMA------------------SDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~------------------~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+.-++.+|++.+-||+.--.. ..|+--+|.- .-++++=.++++||++|++.||=|=.
T Consensus 193 ~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 193 LQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred HHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 566788899999999952111 0111112221 11789999999999999999998843
No 223
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=33.93 E-value=1.2e+02 Score=29.57 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=42.0
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 237 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~Q 237 (267)
...+++-++.|+++|++-||+-.+-|. ....+.--+.+.-|+++|+-|=+-+-+ +||--
T Consensus 120 ~~~~~e~l~~L~eAGLDEIRfHp~~~~-----------~~~~e~~i~~l~~A~~~g~dvG~EiPa-ipg~e 178 (353)
T COG2108 120 ILATEEALKALAEAGLDEIRFHPPRPG-----------SKSSEKYIENLKIAKKYGMDVGVEIPA-IPGEE 178 (353)
T ss_pred ccCCHHHHHHHHhCCCCeEEecCCCcc-----------ccccHHHHHHHHHHHHhCccceeecCC-CcchH
Confidence 457899999999999999999654111 012333344667777888888888888 88754
No 224
>PLN02389 biotin synthase
Probab=33.75 E-value=85 Score=30.68 Aligned_cols=55 Identities=11% Similarity=-0.070 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCCcEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL~VI 226 (267)
.++++.++.|+++|++.+ ++.... .+.-+.-.. ...++.--++++.|++.||+|.
T Consensus 175 ~l~~E~l~~LkeAGld~~--~~~LeT--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAY--NHNLDT--SREYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred CCCHHHHHHHHHcCCCEE--EeeecC--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 688999999999999965 443321 010010011 2378888889999999999873
No 225
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=33.62 E-value=38 Score=31.65 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|-.-
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y 184 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECY 184 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecch
Confidence 4688999999999999999999643
No 226
>PRK07681 aspartate aminotransferase; Provisional
Probab=33.48 E-value=39 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 184 s~~~~~~i~~~a~~~~~~iI~De~y 208 (399)
T PRK07681 184 HEDFFKEVIAFAKKHNIIVVHDFAY 208 (399)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 6788999999999999999999765
No 227
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=33.40 E-value=42 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|-.-
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y 190 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECY 190 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecch
Confidence 5688999999999999999999754
No 228
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=33.25 E-value=41 Score=31.80 Aligned_cols=23 Identities=9% Similarity=-0.217 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+.+|+|-
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DE 216 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDE 216 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46899999999999999999996
No 229
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=33.06 E-value=1.7e+02 Score=29.57 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=42.8
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
=.|.+..+.+.++|++.|++-++-=..........+-..++..+-++.+.|+++|+.||-|
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 3688999999999999999888532111111111111126788888999999999999977
No 230
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=33.06 E-value=46 Score=31.77 Aligned_cols=63 Identities=10% Similarity=-0.106 Sum_probs=40.9
Q ss_pred cCHHH---HHHHHh-CCCCEEEeecccccccC------CCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDD---FKFIAG-NGLNAVRIPVGWWMASD------PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~D---f~~Ia~-~G~N~VRIPvgyw~~~d------~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++.+ ++.+++ +|+++.-+.+.+-.+.+ ....+|...-.......+.+.|+++|+++||.=|+
T Consensus 97 ~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~ 169 (343)
T TIGR03573 97 NTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGEN 169 (343)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCC
Confidence 35554 555544 89999999886432211 01234554433444566778999999999999888
No 231
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.76 E-value=49 Score=28.47 Aligned_cols=44 Identities=14% Similarity=-0.036 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+++.++++|.+.|=++.- . .-..+.+++++|+++|++++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~-----~----------~~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV-----A----------DDATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEecc-----C----------CHHHHHHHHHHHHHcCCEEEEEecC
Confidence 578888999998876531 1 1145678999999999999999887
No 232
>PLN02368 alanine transaminase
Probab=32.55 E-value=44 Score=32.56 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.|.+++++|++||+.||.|=
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE 250 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDE 250 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 68999999999999999999995
No 233
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=32.36 E-value=65 Score=30.68 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
|...-++++.+.|+++|+.|++|--. +-|
T Consensus 156 G~~~~~~~I~~l~~~~g~~livD~a~-a~g 184 (402)
T TIGR02006 156 GVIQDIAAIGEICRERKVFFHVDAAQ-SVG 184 (402)
T ss_pred eecccHHHHHHHHHHcCCEEEEEcch-hcC
Confidence 56667889999999999999999876 444
No 234
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=32.36 E-value=78 Score=30.37 Aligned_cols=60 Identities=22% Similarity=0.086 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCCEEEeecccc-c--ccC-CCCCCCCcc---chHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWW-M--ASD-PTPPAPYVG---GSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw-~--~~d-~~~~~P~~~---g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
++-++.|++.|+|+|=|-|.=- - ..+ ..+...-.+ ....-++.+++.++++|||+|==+.
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv 82 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIV 82 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 3447899999999999998411 0 000 001000011 1235588899999999999996543
No 235
>PRK05957 aspartate aminotransferase; Provisional
Probab=32.28 E-value=44 Score=31.67 Aligned_cols=25 Identities=12% Similarity=-0.209 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|-.-
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y 202 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAY 202 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4678999999999999999999764
No 236
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.19 E-value=53 Score=29.97 Aligned_cols=57 Identities=12% Similarity=-0.033 Sum_probs=38.5
Q ss_pred CHHHHHHHHhCC----CCEEEeeccc--ccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 170 VEDDFKFIAGNG----LNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 170 Te~Df~~Ia~~G----~N~VRIPvgy--w~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
.++|++...+.| ++.|||.++- -...... ..-....++.+..++++|++.|++|.+.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL--KKTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 488999998888 9999996632 1100000 0001236788889999999999998864
No 237
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=32.17 E-value=57 Score=30.96 Aligned_cols=53 Identities=15% Similarity=0.002 Sum_probs=35.4
Q ss_pred HHhCCCCEEEeeccc-ccc---cCC--------CCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 177 IAGNGLNAVRIPVGW-WMA---SDP--------TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 177 Ia~~G~N~VRIPvgy-w~~---~d~--------~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++..|++.+.+|+.- ..+ .++ .|.+|. +....++++.+.|+++|+.||+|---
T Consensus 111 ~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~--~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 111 WKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPL--MQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred hhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCC--CcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 455788877777631 111 111 233453 46788999999999999999999653
No 238
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=32.15 E-value=75 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 204 VGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 204 ~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
....++.+|++++.|..--=.+|+|+|+
T Consensus 125 ~d~PF~~~d~l~~~~~~~~~~iiVDFHA 152 (266)
T COG1692 125 LDNPFKAADKLLDEIKLGTDLIIVDFHA 152 (266)
T ss_pred cCCHHHHHHHHHHhCccCCceEEEEccc
Confidence 4457899999999988777789999999
No 239
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=32.04 E-value=42 Score=32.07 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|++|++.||.|=
T Consensus 194 s~~~~~~l~~~a~~~~~~iI~De 216 (409)
T PRK07590 194 TKEQLKAWVDYAKENGSLILFDA 216 (409)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEc
Confidence 68899999999999999999996
No 240
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=31.93 E-value=1.5e+02 Score=29.07 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEE--EcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS--DITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VIL--DLH~ 231 (267)
++||+..++.||+..=|-++. .+++ ..+.|..+++-|++.|.|++| |+++
T Consensus 20 ~~di~~A~~~GIDgFaLNig~--------~d~~---~~~~l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS--------SDSW---QPDQLADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc--------CCcc---cHHHHHHHHHHHHhcCCEEEEEecccC
Confidence 778999999999999887751 1233 468899999999999988876 6654
No 241
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=31.82 E-value=50 Score=31.80 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=24.0
Q ss_pred CCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 201 APYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 201 ~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+|. ..-+|+|.+++.|++++|.||+=-+.
T Consensus 47 eP~--~~~~yv~~~l~~C~~~~Idv~~P~~~ 75 (329)
T PF15632_consen 47 EPA--DGEEYVDWCLDFCKEHGIDVFVPGRN 75 (329)
T ss_pred cCC--CHHHHHHHHHHHHHHhCCeEEEcCcc
Confidence 455 47899999999999999999985443
No 242
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=31.68 E-value=42 Score=31.48 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y 206 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAY 206 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecch
Confidence 6788999999999999999999865
No 243
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=31.38 E-value=44 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|++|++.||.|--
T Consensus 184 s~~~~~~l~~~a~~~~~~ii~De~ 207 (396)
T PRK09147 184 PLDDWKKLFALSDRYGFVIASDEC 207 (396)
T ss_pred CHHHHHHHHHHHHHcCeEEEeecc
Confidence 678999999999999999999964
No 244
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=31.34 E-value=46 Score=33.32 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+.+++++|++|++.||.|--
T Consensus 217 s~e~l~~L~~~a~~~~i~lI~DEi 240 (496)
T PLN02376 217 DKDTLTNLVRFVTRKNIHLVVDEI 240 (496)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcC
Confidence 678999999999999999999964
No 245
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=31.32 E-value=46 Score=30.81 Aligned_cols=25 Identities=8% Similarity=-0.310 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|---
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y 167 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAF 167 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcc
Confidence 6889999999999999999999764
No 246
>PRK08354 putative aminotransferase; Provisional
Probab=31.29 E-value=44 Score=30.63 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|+++|+.||+|-.-
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y 159 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAF 159 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcc
Confidence 5789999999999999999999754
No 247
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.25 E-value=49 Score=29.17 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=39.2
Q ss_pred cCHHHHHH----HHhCCCCEEEeecccccc-cCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 169 IVEDDFKF----IAGNGLNAVRIPVGWWMA-SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 169 ITe~Df~~----Ia~~G~N~VRIPvgyw~~-~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
..++|++. ++..|+..|||.++-... ....- .--....++.+.+++++|+++|+.|-+.+
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNL-NKSREEALERIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCc
Confidence 45666666 346999999998854321 00000 00112368888899999999999997765
No 248
>PRK08068 transaminase; Reviewed
Probab=31.24 E-value=44 Score=31.53 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||+|-.-
T Consensus 185 s~~~~~~l~~la~~~~~~ii~Deay 209 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVVHDFAY 209 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhh
Confidence 6889999999999999999999754
No 249
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.07 E-value=2e+02 Score=25.62 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=37.5
Q ss_pred ccCHHHHHHH----HhCCCCEEEeecccccccCCCCCCC-CccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 168 YIVEDDFKFI----AGNGLNAVRIPVGWWMASDPTPPAP-YVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 168 yITe~Df~~I----a~~G~N~VRIPvgyw~~~d~~~~~P-~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++.++++.+ ++.|+. |-+--.|.. .....+| ....++++|.++++.|++.|.++|+ +|.
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~--nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv-~h~ 105 (273)
T smart00518 41 RLSEETAEKFKEALKENNID-VSVHAPYLI--NLASPDKEKVEKSIERLIDEIKRCEELGIKALV-FHP 105 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCC-EEEECCcee--cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-Ecc
Confidence 4778888875 456765 222112321 1111122 2334789999999999999999766 676
No 250
>PRK07550 hypothetical protein; Provisional
Probab=31.03 E-value=47 Score=31.30 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd~y 205 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDETY 205 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 5778999999999999999999853
No 251
>PRK08960 hypothetical protein; Provisional
Probab=30.83 E-value=49 Score=31.19 Aligned_cols=23 Identities=13% Similarity=-0.286 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|++||+.||+|-
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57899999999999999999996
No 252
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=30.80 E-value=47 Score=31.21 Aligned_cols=25 Identities=8% Similarity=-0.205 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++|+++.+.|++||+.+|+|--.
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~Dev~ 234 (413)
T cd00610 210 PPGYLKALRELCRKHGILLIADEVQ 234 (413)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 4567999999999999999999543
No 253
>PRK09265 aminotransferase AlaT; Validated
Probab=30.76 E-value=49 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|+++|+.||+|-.
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii~De~ 209 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIFADEI 209 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEEEehh
Confidence 468899999999999999999943
No 254
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.74 E-value=1.8e+02 Score=26.94 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHhCCCCEEEeecccccccCC-CCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDP-TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~-~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-+.+|++|+..+|.-+ ++| +.+.-|.+-..+-|+.+.+.|++.||.++-++|.
T Consensus 47 A~~lk~~g~~~~r~~~-----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 47 AEKLKELGVHMLRGGA-----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred HHHHHHcCCCEEEEee-----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 3567779999999854 122 1111232224566777777899999999999998
No 255
>PRK08636 aspartate aminotransferase; Provisional
Probab=30.69 E-value=48 Score=31.58 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++|++.||.|-.-
T Consensus 193 s~~~~~~l~~~a~~~~~~II~De~Y 217 (403)
T PRK08636 193 EKSFYERLVALAKKERFYIISDIAY 217 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 6899999999999999999999764
No 256
>PLN00175 aminotransferase family protein; Provisional
Probab=30.68 E-value=48 Score=31.95 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|-.-
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y 229 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVY 229 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 5689999999999999999999754
No 257
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=30.67 E-value=46 Score=31.36 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+.+++++|++||+.||+|=.
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De~ 206 (388)
T PRK07366 183 PLSFFQEAVAFCQQHDLVLVHDFP 206 (388)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecc
Confidence 678999999999999999999943
No 258
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=30.65 E-value=1.9e+02 Score=28.11 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=37.8
Q ss_pred HHHHHhCCCCEEEeecccccccCCCCCCC--CccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 174 FKFIAGNGLNAVRIPVGWWMASDPTPPAP--YVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 174 f~~Ia~~G~N~VRIPvgyw~~~d~~~~~P--~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-+.+++.|+..+|- +.| +|. ..| |.+-.++-+..+.+.|+++||.++-+.|.
T Consensus 138 A~~lk~~g~~~~r~--~~~---kpR-tsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 138 AKALKAKGLKLLRG--GAF---KPR-TSPYDFQGLGVEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred HHHHHHcCCcEEEc--ccc---CCC-CCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 45678899999993 333 221 124 33336788888888899999999999997
No 259
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=30.53 E-value=48 Score=33.37 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++..|+++.+.|++|||.|++|--.
T Consensus 189 s~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 189 SMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccc
Confidence 5788999999999999999999754
No 260
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=30.52 E-value=34 Score=31.15 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|...-++++.+.|+++|+.||+|-=.
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEccc
Confidence 34455788999999999999999765
No 261
>PRK09148 aminotransferase; Validated
Probab=30.43 E-value=47 Score=31.76 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 183 s~~~l~~l~~~a~~~~~~ii~De~Y 207 (405)
T PRK09148 183 DLDFYKDVVAFAKKHDIIILSDLAY 207 (405)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 6888999999999999999999654
No 262
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=30.21 E-value=51 Score=30.85 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|++||+.||+|-
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De 181 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDE 181 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeC
Confidence 57889999999999999999994
No 263
>PRK05839 hypothetical protein; Provisional
Probab=30.14 E-value=48 Score=31.32 Aligned_cols=54 Identities=17% Similarity=0.075 Sum_probs=35.9
Q ss_pred HHhCCCCEEEeeccc---ccc-c-----C-------CCCCCCCcc-chHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 177 IAGNGLNAVRIPVGW---WMA-S-----D-------PTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 177 Ia~~G~N~VRIPvgy---w~~-~-----d-------~~~~~P~~~-g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
++..|++.+.+|+.- |.. . . .+|.+|--. -..+.+.+++++|+++|+.||+|-.
T Consensus 126 ~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~ 196 (374)
T PRK05839 126 AIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDEC 196 (374)
T ss_pred HHhcCCEEEEeecccccCCcCCcchhhhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccc
Confidence 467789999888842 111 0 0 012333210 1678899999999999999999964
No 264
>PRK06348 aspartate aminotransferase; Provisional
Probab=30.08 E-value=50 Score=31.19 Aligned_cols=25 Identities=20% Similarity=-0.069 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+.+++++++|++||+.||+|-.-
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y 204 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVY 204 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEeccc
Confidence 6789999999999999999999754
No 265
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=30.06 E-value=49 Score=31.29 Aligned_cols=23 Identities=13% Similarity=-0.216 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|.++.++|++||+.+|+|=
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DE 224 (398)
T PRK03244 202 PAGYLAAAREITDRHGALLVLDE 224 (398)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45779999999999999999995
No 266
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.94 E-value=1.9e+02 Score=28.38 Aligned_cols=60 Identities=13% Similarity=-0.044 Sum_probs=43.5
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
.|.+-.+.|-++|.+.||+=||-=...........--.++..+.++-+.|+++|..||-|
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 578888899999999999998754332211100111128999999999999999999976
No 267
>PRK06108 aspartate aminotransferase; Provisional
Probab=29.93 E-value=51 Score=30.67 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|+++|+.||+|-.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~ 199 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEV 199 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehh
Confidence 578899999999999999999954
No 268
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=29.87 E-value=1e+02 Score=26.66 Aligned_cols=25 Identities=8% Similarity=-0.186 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHCCC----cEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFF----PVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL----~VILDLH~ 231 (267)
+.+..+..++.++++++ .++||+=.
T Consensus 72 a~~eA~~f~~~~~~~~~~~~~~~~lD~E~ 100 (192)
T cd06522 72 AQAEARYFANTAKSLGLSKNTVMVADMED 100 (192)
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 45667777888888766 46899976
No 269
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=29.68 E-value=54 Score=30.08 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=43.8
Q ss_pred ChhHHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcE--EEEcCCCC
Q 024471 156 KAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITISV 233 (267)
Q Consensus 156 ~a~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~V--ILDLH~~a 233 (267)
...++|+..|++ .......+.+.|.|||-|-- +..|. +.+-|+-+||.| +|++|. .
T Consensus 63 ~l~~~L~~~~~~------~~~~~~~~~~~IeIPV~Y~~-----~~GpD----------L~~va~~~gls~~evI~~Hs-~ 120 (223)
T COG2049 63 ELLERLRALWEE------IEALEAAGIRLIEIPVVYGG-----EYGPD----------LAEVARHNGLSVEEVIELHS-S 120 (223)
T ss_pred HHHHHHHHHHhc------hhhhccccCCEEEEeeEeCC-----CCCCC----------HHHHHHHcCCCHHHHHHHhc-C
Confidence 344566666632 33444567799999996652 11232 445667788876 789998 4
Q ss_pred C-------CCCCCCCCCCCC
Q 024471 234 T-------TSQDLTIMGGPV 246 (267)
Q Consensus 234 P-------G~QN~~~hsG~~ 246 (267)
+ |.+-|+.+-|..
T Consensus 121 ~~Y~V~~lGf~pGFpyl~gl 140 (223)
T COG2049 121 TEYRVYMLGFAPGFPYLGGL 140 (223)
T ss_pred CceEEEEEccCCCcccccCC
Confidence 4 667777776665
No 270
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.68 E-value=1.9e+02 Score=25.34 Aligned_cols=25 Identities=20% Similarity=-0.104 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 205 GGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 205 ~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.|++....++.+.|+++|+.+++ |+
T Consensus 179 ~GGi~~~~~i~~~a~~~gi~~~~--~~ 203 (229)
T cd00308 179 VGGLTESRRAADLAEAFGIRVMV--HG 203 (229)
T ss_pred cCCHHHHHHHHHHHHHcCCEEee--cC
Confidence 35788899999999999999987 65
No 271
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=29.50 E-value=34 Score=31.81 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|....+++++++|++||+.||+|-=.
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 34567899999999999999999654
No 272
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.48 E-value=1.6e+02 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
+-.++.|+.+++.|++.|=|..++..... |.. ....++++-+.++++||.|..
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFA-----PDL--KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccc-----ccc--CchHHHHHHHHHHHcCCeEEE
Confidence 34588899999999999998443221111 111 234577788889999999853
No 273
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=29.39 E-value=53 Score=31.13 Aligned_cols=25 Identities=16% Similarity=-0.164 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|-.-
T Consensus 184 s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 184 SREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccc
Confidence 4688999999999999999999876
No 274
>PLN02721 threonine aldolase
Probab=29.36 E-value=53 Score=29.96 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.|+++.+.|++||+.+|+|--
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~a 179 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDGA 179 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEch
Confidence 467899999999999999999953
No 275
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.30 E-value=31 Score=32.36 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHCCCcEE
Q 024471 205 GGSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 205 ~g~l~~LD~av~wA~k~GL~VI 226 (267)
+.+++.+.++|..|++.||++|
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtI 113 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTI 113 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeE
Confidence 4589999999999999999987
No 276
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=28.78 E-value=49 Score=27.15 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.3
Q ss_pred cccCHHHHHHHHhCCCCEE
Q 024471 167 TYIVEDDFKFIAGNGLNAV 185 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~V 185 (267)
.=+|++|++.|++.||.+|
T Consensus 13 ~qlt~~d~~~L~~~GiktV 31 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTV 31 (135)
T ss_pred CCCCHHHHHHHHHCCCcEE
Confidence 3478888888888888887
No 277
>PRK06207 aspartate aminotransferase; Provisional
Probab=28.77 E-value=56 Score=31.33 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|=.-
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y 220 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLY 220 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 5788999999999999999999765
No 278
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=28.75 E-value=54 Score=30.74 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..++++++.++|++||+.+|+|-
T Consensus 201 ~~~~l~~l~~l~~~~~~~lI~DE 223 (396)
T PRK02627 201 DKEYLQALRELCDENGILLILDE 223 (396)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45689999999999999999996
No 279
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=28.74 E-value=46 Score=31.46 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||.|-.-
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De~Y 207 (393)
T TIGR03538 183 SLDTLKKLIELADQYGFIIASDECY 207 (393)
T ss_pred CHHHHHHHHHHHHHCCEEEEECcch
Confidence 6788999999999999999999754
No 280
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=28.72 E-value=88 Score=31.56 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=39.9
Q ss_pred hhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 163 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 163 ~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
+||...+.|.-++.-++.|++.+|| |-++. ..+-|..+++-++|+|.+|..-+
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi---FDAlN-----------D~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI---FDALN-----------DVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe---chhcc-----------chhHHHHHHHHHHhcCceeEEEE
Confidence 5787778887777888999999998 22221 24557889999999999887543
No 281
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=28.69 E-value=54 Score=30.69 Aligned_cols=23 Identities=13% Similarity=-0.214 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+.+|+|=
T Consensus 186 ~~~~l~~l~~l~~~~~~~lI~DE 208 (377)
T PRK02936 186 DPAFLQEVQTLCKKFGALLIIDE 208 (377)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45889999999999999999994
No 282
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=28.57 E-value=50 Score=31.73 Aligned_cols=23 Identities=9% Similarity=-0.224 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..++|.++.+.|++||+.+|+|=
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DE 224 (406)
T PRK12381 202 DKAFLQGLRELCDRHNALLIFDE 224 (406)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcc
Confidence 47899999999999999999994
No 283
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=28.47 E-value=54 Score=31.90 Aligned_cols=25 Identities=20% Similarity=-0.072 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.|++++++|+++|+.||+|---
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y 232 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVY 232 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 5678999999999999999999643
No 284
>PRK08912 hypothetical protein; Provisional
Probab=28.45 E-value=50 Score=31.09 Aligned_cols=25 Identities=8% Similarity=-0.192 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||+|-.-
T Consensus 177 s~~~~~~i~~~~~~~~~~ii~De~y 201 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAICDEVW 201 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhhh
Confidence 4678999999999999999999653
No 285
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=28.44 E-value=1.2e+02 Score=28.16 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCCEEEeecccccccCCCCCCCCc-cchHHHHHHHHHHHHHCCC-cEEEEcCC
Q 024471 172 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFF-PVPSDITI 231 (267)
Q Consensus 172 ~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~-~g~l~~LD~av~wA~k~GL-~VILDLH~ 231 (267)
+.++.+++.|++.|.|.+.-.. +....-.. .+.++.+-++++.|.+.|+ .|.|.+--
T Consensus 109 ~~~~~L~~agl~~i~ISlds~~---~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 109 RRAAALKDAGLDRVNVSLDSLD---PERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHcCCCEEEEEeccCC---HHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 4577889999998888874221 10000000 1356777777777777777 66665544
No 286
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=28.42 E-value=45 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHCCCcEEEEcCC
Q 024471 210 ALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 210 ~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++++++.|++.|-.|+|++|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a 26 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA 26 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET
T ss_pred hHHHHHHHHHHcCCCEEEEEEC
Confidence 3788999999999999999987
No 287
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=28.42 E-value=1e+02 Score=28.65 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
|...-++++.++|++||+.+|+|.=. ..|.
T Consensus 143 G~~~~i~~I~~l~~~~g~~livD~~~-~~g~ 172 (363)
T TIGR02326 143 GILNPIEAVAKLAHRHGKVTIVDAMS-SFGG 172 (363)
T ss_pred cccCcHHHHHHHHHHcCCEEEEEccc-cccC
Confidence 44555789999999999999999744 4444
No 288
>PRK09082 methionine aminotransferase; Validated
Probab=28.12 E-value=52 Score=31.06 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|---
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y 205 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVY 205 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhh
Confidence 4588999999999999999999643
No 289
>PRK07324 transaminase; Validated
Probab=28.05 E-value=56 Score=30.87 Aligned_cols=24 Identities=21% Similarity=-0.060 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|++||+.||+|-.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~ 194 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEV 194 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcc
Confidence 577899999999999999999953
No 290
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=28.03 E-value=58 Score=32.40 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.|+++.+.|++|||.||+|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58889999999999999999996
No 291
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=28.00 E-value=54 Score=30.60 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|+++|+.||+|-.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~ 183 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEA 183 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecc
Confidence 567799999999999999999975
No 292
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=27.84 E-value=60 Score=31.13 Aligned_cols=25 Identities=20% Similarity=-0.039 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||+|---
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y 212 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVY 212 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccc
Confidence 6788999999999999999999643
No 293
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=27.70 E-value=57 Score=31.04 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-+-
T Consensus 191 s~~~~~~l~~~a~~~~~~iI~De~y 215 (402)
T TIGR03542 191 TKEQLKELVDYANEHGSLILFDAAY 215 (402)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEchh
Confidence 6788999999999999999999865
No 294
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=27.69 E-value=81 Score=29.47 Aligned_cols=62 Identities=10% Similarity=-0.086 Sum_probs=42.2
Q ss_pred ccCHHHHHHHHhCCCCEEEeeccccc-ccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWM-ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~-~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
-...+|++...+.|+..|-|.++=-. +.... ...-....++.+.+++++|+++|++|-+-+=
T Consensus 74 r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~-~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 74 RANKEDLKLVKEMGLKETGILMSVSDYHIFKK-LKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH-hCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 35689999999999999888763210 00000 0011234788899999999999999888764
No 295
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=27.65 E-value=2e+02 Score=29.17 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=47.4
Q ss_pred hhHHHHhhhh-------cccCHHHHHHHHhCCCCEEEeeccccccc-CCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 157 APQVMRKHWS-------TYIVEDDFKFIAGNGLNAVRIPVGWWMAS-DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 157 a~~~l~~Hw~-------tyITe~Df~~Ia~~G~N~VRIPvgyw~~~-d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
..+.+++++. +=.|.++.+.+.++|.+.|++-++-=... .......-+ .++..|.++.+.|+++|+.||-|
T Consensus 272 ~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~-p~~~ai~~~~~~~~~~~v~vIad 350 (495)
T PTZ00314 272 MIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGR-PQASAVYHVARYARERGVPCIAD 350 (495)
T ss_pred HHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCC-ChHHHHHHHHHHHhhcCCeEEec
Confidence 3455566652 35678999999999999999866421100 100000000 16788888999999999999986
Q ss_pred cC
Q 024471 229 IT 230 (267)
Q Consensus 229 LH 230 (267)
=.
T Consensus 351 GG 352 (495)
T PTZ00314 351 GG 352 (495)
T ss_pred CC
Confidence 33
No 296
>PTZ00377 alanine aminotransferase; Provisional
Probab=27.61 E-value=58 Score=32.07 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+++++++|++||+.||.|-
T Consensus 236 s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 236 TRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeh
Confidence 67899999999999999999994
No 297
>PRK06225 aspartate aminotransferase; Provisional
Probab=27.56 E-value=60 Score=30.48 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|+++|+.+|+|-
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De 197 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDC 197 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeh
Confidence 46789999999999999999995
No 298
>PRK07777 aminotransferase; Validated
Probab=27.55 E-value=60 Score=30.55 Aligned_cols=25 Identities=16% Similarity=-0.083 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.+|+|-.-
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y 201 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVY 201 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccc
Confidence 4678999999999999999999654
No 299
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=27.53 E-value=47 Score=27.10 Aligned_cols=20 Identities=15% Similarity=-0.147 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHCCCcEEEEc
Q 024471 210 ALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 210 ~LD~av~wA~k~GL~VILDL 229 (267)
.++++-++.+.||..||||+
T Consensus 88 v~~kv~eY~e~~G~~Vii~t 107 (109)
T PF15647_consen 88 VHDKVKEYIERYGGKVIIDT 107 (109)
T ss_pred ccHHHHHHHHHcCcEEEecC
Confidence 67888999999999999996
No 300
>PRK05939 hypothetical protein; Provisional
Probab=27.33 E-value=87 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=38.4
Q ss_pred HHHHhCCCCEEEeecc-cccc---cCC--------CCCCCCccchHHHHHHHHHHHHHCCCcEEEEc-CCCCCCCCC
Q 024471 175 KFIAGNGLNAVRIPVG-WWMA---SDP--------TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI-TISVTTSQD 238 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvg-yw~~---~d~--------~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL-H~~aPG~QN 238 (267)
..++..|+..+.+|+. ...+ ..+ .+.+| .+...-|+++.+.|+++|+.||+|- |+ .|..++
T Consensus 104 ~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~Np--tG~v~dl~~I~~la~~~gi~livD~t~a-~~~~~~ 177 (397)
T PRK05939 104 GTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANP--GTQVADLAGIGALCRERGLLYVVDNTMT-SPWLFR 177 (397)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCC--CCCHHhHHHHHHHHHHcCCEEEEECCcc-cccccC
Confidence 3456678777777763 1111 111 11222 2456779999999999999999998 45 555443
No 301
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.29 E-value=1.8e+02 Score=28.06 Aligned_cols=27 Identities=7% Similarity=-0.214 Sum_probs=21.5
Q ss_pred CCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 202 PYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 202 P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
+|....-+.+.++.+.++++||.|.|=
T Consensus 306 ky~~ps~e~l~~f~~~L~~~gi~v~ir 332 (356)
T PRK14455 306 DYVRTPKEDIFAFEDTLKKNGVNCTIR 332 (356)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 344446678888999999999999984
No 302
>PLN02187 rooty/superroot1
Probab=27.15 E-value=58 Score=32.15 Aligned_cols=24 Identities=25% Similarity=-0.064 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+.+++++|++||+.||+|--
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~ 245 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEV 245 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecc
Confidence 578899999999999999999973
No 303
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=27.07 E-value=62 Score=30.71 Aligned_cols=25 Identities=12% Similarity=-0.137 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+.+++++++|++||+.||.|-.-
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y 214 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAY 214 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEeccc
Confidence 6899999999999999999998643
No 304
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.86 E-value=2.2e+02 Score=25.46 Aligned_cols=21 Identities=24% Similarity=0.042 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEE
Q 024471 207 SLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VIL 227 (267)
..+.|.++.+.++++||+|+|
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 567888889999999999987
No 305
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=26.78 E-value=88 Score=25.90 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=34.3
Q ss_pred HHHHhCCCCEEEeecccccccC----CCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASD----PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d----~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+++.|+..+-+-+..-.... ....++ ....++.+.++++.|++.|.+.|+ +|.
T Consensus 34 ~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~-~~~ 92 (213)
T PF01261_consen 34 RLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIV-VHS 92 (213)
T ss_dssp HHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEE-EEC
T ss_pred HHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCcee-ecC
Confidence 4557889996554442221111 111222 344699999999999999999965 443
No 306
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=26.68 E-value=61 Score=30.44 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|---
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y 208 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVCHDAAY 208 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecch
Confidence 5788999999999999999999754
No 307
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=26.66 E-value=37 Score=31.95 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCcEEEEcCC
Q 024471 211 LDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 211 LD~av~wA~k~GL~VILDLH~ 231 (267)
++.++..|++.||.|++|.|.
T Consensus 192 ~~d~L~ic~~~giP~VfD~hH 212 (275)
T PF03851_consen 192 VEDVLPICEKLGIPMVFDYHH 212 (275)
T ss_dssp HHHHHHHHHHHT--EEEEHHH
T ss_pred HHHHHHHHHHhCCCEEEEhHH
Confidence 778889999999999999996
No 308
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=26.55 E-value=60 Score=31.52 Aligned_cols=24 Identities=8% Similarity=-0.209 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
.-++|.++.+.|++||+-+|+|==
T Consensus 226 ~~~~l~~l~~lc~~~g~llI~DEv 249 (433)
T PRK08117 226 PKSFLKKLREICDRHGILLIFDEV 249 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 467899999999999999999953
No 309
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.35 E-value=90 Score=30.06 Aligned_cols=33 Identities=9% Similarity=-0.152 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 238 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN 238 (267)
+...-|+++.+.|+++|+.||+|--...|-.+.
T Consensus 149 g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~ 181 (377)
T TIGR01324 149 FEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK 181 (377)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCCccccccC
Confidence 467789999999999999999996541443344
No 310
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=26.24 E-value=67 Score=32.58 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=35.9
Q ss_pred ccCHHHHH-HHHhCC---CCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 168 YIVEDDFK-FIAGNG---LNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 168 yITe~Df~-~Ia~~G---~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
-++-++++ .|+..| +-.++.-+.- +...+.|+ +++.|+.+-+.|++|||.|.||=-
T Consensus 166 ~~dl~~le~~I~~~g~~~i~~v~~tlt~----N~~GGqpv---slenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 166 NFDLEGLERGIEEVGPNNVPYIVATITC----NSAGGQPV---SLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred CcCHHHHHHHHhhcCCCCceeeeeeEEE----ecCCCEEe---CHHHHHHHHHHHHHcCCcEEEEhH
Confidence 35555554 445544 3444444422 11122344 799999999999999999999963
No 311
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=26.19 E-value=2.1e+02 Score=28.03 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=38.7
Q ss_pred ccCHHHHHHHHhCCCCEEEeec-ccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCc
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPV-GWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP 224 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPv-gyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~ 224 (267)
-++++..+++++.|+ .|=|-+ |.-..-|- .-|.. .|.++++-+++++.++|++.
T Consensus 101 LL~~e~~e~l~~~~~-~IgISiDGp~eihD~--~R~~~~GkgTfd~i~~~i~~L~~~~v~ 157 (378)
T COG0641 101 LLNDEWAEFLAEHDF-LIGISIDGPEEIHDK--YRVTKSGKGTFDRVMKGLELLQAHGVD 157 (378)
T ss_pred ccCHHHHHHHHhcCc-eEEEeccCchHhccc--cccCCCCCccHHHHHHHHHHHHHcCCc
Confidence 477888899999999 888888 43322121 11222 24899999999999999876
No 312
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.19 E-value=74 Score=23.80 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEE
Q 024471 207 SLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VIL 227 (267)
+-..++.++++|+++|++|+.
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 567899999999999999974
No 313
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=26.12 E-value=63 Score=30.56 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 208 LRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-++|+++.+.|++||+.+|+|==.
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv~ 230 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEIQ 230 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEechh
Confidence 467999999999999999999543
No 314
>PRK06855 aminotransferase; Validated
Probab=26.07 E-value=66 Score=31.24 Aligned_cols=24 Identities=13% Similarity=-0.105 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+.+++++|++||+.||.|=-
T Consensus 189 s~~~~~~l~~~a~~~~~~II~De~ 212 (433)
T PRK06855 189 PKEILREIVDIAREYDLFIICDEI 212 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 689999999999999999999853
No 315
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=26.06 E-value=68 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|---
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y 210 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIY 210 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhh
Confidence 4678999999999999999999643
No 316
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=26.05 E-value=63 Score=30.03 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|-.-
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 5678999999999999999999865
No 317
>PLN00144 acetylornithine transaminase
Probab=26.03 E-value=63 Score=30.94 Aligned_cols=22 Identities=14% Similarity=-0.201 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEEc
Q 024471 208 LRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDL 229 (267)
-++++++.++|++||+.+|+|=
T Consensus 187 ~~~~~~l~~l~~~~g~llI~DE 208 (382)
T PLN00144 187 KEFLQGLRALCDEAGALLVFDE 208 (382)
T ss_pred HHHHHHHHHHHHHcCCEEEEec
Confidence 4679999999999999999994
No 318
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=25.98 E-value=66 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|+++|+.||+|-.-
T Consensus 195 s~~~~~~l~~~a~~~~~~ii~De~y 219 (412)
T PTZ00433 195 SRKHVEDIIRLCEELRLPLISDEIY 219 (412)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeccc
Confidence 4788999999999999999999765
No 319
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.94 E-value=54 Score=34.93 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=22.2
Q ss_pred ccCCCcceEeEEeeCCeEEEEEe-CCeEEEe
Q 024471 35 LLQTGHLHQLWRINETNFHFRVF-NKQFIGL 64 (267)
Q Consensus 35 ~~s~wetf~lwr~~~~~f~~r~~-~~~f~~~ 64 (267)
++|-=.|.|||++...++ |+|| .+.|||+
T Consensus 385 SSSMDKTVRLWh~~~~~C-L~~F~HndfVTc 414 (712)
T KOG0283|consen 385 SSSMDKTVRLWHPGRKEC-LKVFSHNDFVTC 414 (712)
T ss_pred eccccccEEeecCCCcce-eeEEecCCeeEE
Confidence 346668999999986666 8886 5788884
No 320
>PRK07337 aminotransferase; Validated
Probab=25.86 E-value=68 Score=30.19 Aligned_cols=23 Identities=9% Similarity=-0.307 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|+++|+.||+|-
T Consensus 181 ~~~~~~~i~~~a~~~~~~ii~De 203 (388)
T PRK07337 181 APDELRRIVEAVRARGGFTIVDE 203 (388)
T ss_pred CHHHHHHHHHHHHHCCCEEEEec
Confidence 47889999999999999999993
No 321
>PLN02651 cysteine desulfurase
Probab=25.85 E-value=1.1e+02 Score=28.52 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=37.7
Q ss_pred HHHHhCCCCEEEeecccccccCC-------CCC--------CCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDP-------TPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~-------~~~--------~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
..++..|+..+.||+..-...++ .+. .....|...-++++.+.|+++|+.+++|-=. ..|
T Consensus 106 ~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~-~~g 180 (364)
T PLN02651 106 RHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ-AVG 180 (364)
T ss_pred HHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcch-hhC
Confidence 34556788888888752111111 000 0112355666889999999999999999876 544
No 322
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.65 E-value=75 Score=29.49 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
.++.|.+.+++++++|+.||+|+=
T Consensus 71 gi~~l~~~~~~~~~~g~~VilD~K 94 (261)
T TIGR02127 71 GFKALEEVIAHARSLGLPVLADVK 94 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEee
Confidence 578899999999999999999984
No 323
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=25.63 E-value=56 Score=30.82 Aligned_cols=25 Identities=8% Similarity=-0.189 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++|.++.+.|++||+-+|+|==.
T Consensus 196 ~~~~l~~l~~lc~~~gillI~DEV~ 220 (339)
T PF00202_consen 196 PPEYLRELRELCREHGILLIADEVQ 220 (339)
T ss_dssp -TTHHHHHHHHHHHTT-EEEEEETT
T ss_pred ccchhhehcccccccccceeccccc
Confidence 4678999999999999999999644
No 324
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=25.51 E-value=88 Score=29.54 Aligned_cols=57 Identities=28% Similarity=0.210 Sum_probs=36.2
Q ss_pred HhCCCCEEEeecccccccCC-------CCC-------CC-CccchHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 178 AGNGLNAVRIPVGWWMASDP-------TPP-------AP-YVGGSLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 178 a~~G~N~VRIPvgyw~~~d~-------~~~-------~P-~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
+..|+..++||+..-...+. .+. .| ...|...-++++.+.|+++|+.||+|-=. +.|
T Consensus 131 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~-~~g 202 (401)
T PRK10874 131 QQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQ-GAV 202 (401)
T ss_pred HHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCc-ccc
Confidence 56699998988853111111 010 01 12345556888999999999999999765 444
No 325
>PRK06290 aspartate aminotransferase; Provisional
Probab=25.31 E-value=61 Score=31.30 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+.+++++|++||+.||+|-.-
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecch
Confidence 6788999999999999999999765
No 326
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=25.28 E-value=47 Score=30.23 Aligned_cols=25 Identities=12% Similarity=-0.149 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
....++++.++|+++|+.||+|-=.
T Consensus 161 ~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 161 DIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCcCHHHHHHHHHHcCcEEEEECcc
Confidence 3456889999999999999999644
No 327
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.19 E-value=1.5e+02 Score=25.13 Aligned_cols=53 Identities=6% Similarity=0.015 Sum_probs=36.8
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
...++..+....++.|||.-.+-.-... + ......++.++..|+.+|+.||+.
T Consensus 156 ~~~~~~~l~~~~~d~iKld~~~~~~~~~---~---~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 156 GYSSLSYLKRLPVDYLKIDRSFVRDIET---D---PEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred cHhhHHHHHhCCCCEEEECHHHHHhHhc---C---hhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3455677777778888877655432111 0 125677889999999999999985
No 328
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.19 E-value=2.3e+02 Score=26.91 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTT 235 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG 235 (267)
..+.+.+++++|+++||.||--+= +||
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD--~PG 99 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEID--MPG 99 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecC--CcH
Confidence 578899999999999999998774 355
No 329
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.15 E-value=96 Score=29.82 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=35.9
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCC---CCC-ccchHHHHHHHHHHHHHCCCc-EEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPP---APY-VGGSLRALDNAFTWAGYAFFP-VPSD 228 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~---~P~-~~g~l~~LD~av~wA~k~GL~-VILD 228 (267)
-+|+++++.|+++|++.+-|-+ ... ++..+ .|. ....++..-++++.|++.|+. |-++
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~l--ET~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g 221 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQ--ETY-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIG 221 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEe--ecC-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeecee
Confidence 3899999999999999555433 221 11000 010 112566667789999999987 4443
No 330
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=1.2e+02 Score=29.85 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHhC-CCCEEEeecc-cccc-----cC-CCCC--------CCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 174 FKFIAGN-GLNAVRIPVG-WWMA-----SD-PTPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 174 f~~Ia~~-G~N~VRIPvg-yw~~-----~d-~~~~--------~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
++.+++. |+..+.||+. -..+ .. .++. -....|...-++++++.|+++|..|++|.-.
T Consensus 128 w~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 128 WQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred HHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 6777754 9999999985 1111 00 0111 1123467888999999999999999999865
No 331
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=25.13 E-value=71 Score=30.41 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|-.-
T Consensus 187 ~~~~~~~i~~~a~~~~~~ii~De~y 211 (403)
T TIGR01265 187 SRDHLQKIAEVARKLGIPIIADEIY 211 (403)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccc
Confidence 4578999999999999999999754
No 332
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.03 E-value=67 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.|+++++.|++||+.||+|-
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeech
Confidence 57788999999999999999994
No 333
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=24.90 E-value=68 Score=30.51 Aligned_cols=25 Identities=12% Similarity=-0.178 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++|+++.+.|++||+.+|+|--.
T Consensus 205 ~~~~l~~l~~l~~~~g~lli~DEv~ 229 (396)
T PRK04073 205 PEGFLKAARELCKEENVLFIADEIQ 229 (396)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecch
Confidence 3468999999999999999999754
No 334
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.89 E-value=1.7e+02 Score=30.36 Aligned_cols=52 Identities=27% Similarity=0.233 Sum_probs=37.5
Q ss_pred hhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEc
Q 024471 164 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 164 Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDL 229 (267)
|+..-+.+.|++..++.|++.|||-..-- .++-+.++++.|+++|+.|...+
T Consensus 92 ~ypd~vv~~~v~~A~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 92 HYPDDVVEKFVEKAAENGIDIFRIFDALN--------------DVRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred cccchhhHHHHHHHHHCCCCEEEEEEecC--------------hHHHHHHHHHHHHHcCCEEEEEE
Confidence 33334567888999999999999965321 13567778888888888887655
No 335
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=24.78 E-value=89 Score=29.58 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
|....+++++++|++||+.||.|--. +.|+
T Consensus 130 G~~~~~~~i~~la~~~~i~vIeD~a~-a~g~ 159 (375)
T PRK11706 130 GVACEMDTIMALAKKHNLFVVEDAAQ-GVMS 159 (375)
T ss_pred CCccCHHHHHHHHHHcCCEEEEECcc-cccc
Confidence 33455788999999999999999877 6665
No 336
>PRK07568 aspartate aminotransferase; Provisional
Probab=24.75 E-value=72 Score=29.97 Aligned_cols=25 Identities=16% Similarity=-0.081 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|-.-
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y 204 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVY 204 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccc
Confidence 4678999999999999999999654
No 337
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=24.61 E-value=2e+02 Score=28.31 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-+.++.|..+|++.||+-+.--.. ..++. +.+++-.+.+|-|+|=
T Consensus 39 v~QI~~L~~aG~dIVRvtv~~~e~----------A~A~~------~Ik~~~~vPLVaDiHf 83 (361)
T COG0821 39 VAQIKALERAGCDIVRVTVPDMEA----------AEALK------EIKQRLNVPLVADIHF 83 (361)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHH----------HHHHH------HHHHhCCCCEEEEeec
Confidence 445778889999999998721100 01233 3345569999999996
No 338
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=24.60 E-value=69 Score=31.14 Aligned_cols=23 Identities=13% Similarity=-0.159 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+-+|+|=
T Consensus 217 ~~~~l~~l~~lc~~~g~llI~DE 239 (425)
T PRK09264 217 SAEWLQRLAKLCRKHDILLIVDD 239 (425)
T ss_pred CHHHHHHHHHHHHHcCcEEEEec
Confidence 45799999999999999999994
No 339
>PRK07682 hypothetical protein; Validated
Probab=24.57 E-value=67 Score=30.08 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++|++.||+|---
T Consensus 172 s~~~~~~l~~~~~~~~~~ii~De~y 196 (378)
T PRK07682 172 NKSELEEIAVIVEKHDLIVLSDEIY 196 (378)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhh
Confidence 4678999999999999999999764
No 340
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=24.55 E-value=2.9e+02 Score=24.03 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=35.7
Q ss_pred ccCHH-HHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 168 YIVED-DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 168 yITe~-Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+|.+. .++.+.+.|.+.|=+... .. ..+.+.++++.+..+|+.+++++|+
T Consensus 80 ~i~~~~~v~~~~~~Gad~v~l~~~------------~~--~~~~~~~~~~~~~~~g~~~~v~v~~ 130 (217)
T cd00331 80 FIIDPYQIYEARAAGADAVLLIVA------------AL--DDEQLKELYELARELGMEVLVEVHD 130 (217)
T ss_pred eecCHHHHHHHHHcCCCEEEEeec------------cC--CHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44443 677788888887754331 11 1367788888899999999999998
No 341
>PLN02656 tyrosine transaminase
Probab=24.38 E-value=75 Score=30.42 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|++||+.||+|---
T Consensus 187 s~~~~~~i~~~a~~~~~~ii~De~y 211 (409)
T PLN02656 187 SYQHLKKIAETAEKLKILVIADEVY 211 (409)
T ss_pred CHHHHHHHHHHHHHcCCEEEEehhh
Confidence 4578999999999999999999754
No 342
>PRK08363 alanine aminotransferase; Validated
Probab=24.31 E-value=61 Score=30.69 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|+++|+.+|+|-.
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Dea 207 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEI 207 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhh
Confidence 567899999999999999999974
No 343
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=24.29 E-value=59 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.081 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
|...-|+++++.|+++|+.||+|--
T Consensus 167 G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 167 GICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CEecCHHHHHHHHHhcCCeEEEECc
Confidence 4444588999999999999999953
No 344
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.23 E-value=85 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.++.+++.|.+.|=+|. ++ .-+.++++++.|+++|+++++++++
T Consensus 69 ~~~~~~~aGad~i~~h~-----------~~----~~~~~~~~i~~~~~~g~~~~v~~~~ 112 (202)
T cd04726 69 EAEMAFKAGADIVTVLG-----------AA----PLSTIKKAVKAAKKYGKEVQVDLIG 112 (202)
T ss_pred HHHHHHhcCCCEEEEEe-----------eC----CHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 45777888888876653 01 1245788999999999999999776
No 345
>PLN02483 serine palmitoyltransferase
Probab=23.89 E-value=54 Score=32.73 Aligned_cols=26 Identities=19% Similarity=-0.065 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|....|++++++|++||+.+|+|--.
T Consensus 254 G~~~~l~~I~~la~~~~~~livDEa~ 279 (489)
T PLN02483 254 GELCKLPEIVAVCKKYKAYVYLDEAH 279 (489)
T ss_pred CcccCHHHHHHHHHHcCCEEEEECcC
Confidence 45678999999999999999999765
No 346
>PRK08361 aspartate aminotransferase; Provisional
Probab=23.88 E-value=75 Score=30.02 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++++.+|+|-.-
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y 208 (391)
T PRK08361 184 DKEVAKAIADIAEDYNIYILSDEPY 208 (391)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEccc
Confidence 4677899999999999999999654
No 347
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.81 E-value=92 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
.-+.|...++||.+++|+||+|-=
T Consensus 244 ~~e~L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 244 SPEELISLLNFASRKNIHVISDEI 267 (471)
T ss_pred CHHHHHHHHHHHhhcceEEEeehh
Confidence 578899999999999999999943
No 348
>PRK05764 aspartate aminotransferase; Provisional
Probab=23.81 E-value=77 Score=29.72 Aligned_cols=24 Identities=25% Similarity=-0.097 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.+++++++|++||+.||+|-.
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~ 205 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEI 205 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecc
Confidence 367899999999999999999954
No 349
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=23.77 E-value=75 Score=29.95 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+.+.+.|++||+.+|+|=
T Consensus 197 ~~~~l~~l~~l~~~~~~lli~De 219 (400)
T PTZ00125 197 DDGYLKQVYELCKKYNVLLIVDE 219 (400)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45679999999999999999995
No 350
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.69 E-value=1.3e+02 Score=29.16 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCc----cchHHHHHHHHHHHHHCCCc-EEEEcCCCCCC
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV----GGSLRALDNAFTWAGYAFFP-VPSDITISVTT 235 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~----~g~l~~LD~av~wA~k~GL~-VILDLH~~aPG 235 (267)
+..-+.++++|++-|.|.+. ..+++-|. .+.++.+-+.|+-|.+.|+. |=||+=- .+|
T Consensus 101 ~~~a~~Lk~AGl~rVNVSLD------sld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kg 163 (322)
T COG2896 101 ARRAADLKEAGLDRVNVSLD------SLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKG 163 (322)
T ss_pred HHHHHHHHHcCCcEEEeecc------cCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE-ecC
Confidence 44568899999999999873 11222232 23577888888899999996 8888766 655
No 351
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=23.64 E-value=2.1e+02 Score=29.94 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=53.8
Q ss_pred HHHHhhhhcccCHHHHHHHHhCCCCEEEeeccc---------------ccccCCCCCCCCccchHHHHHHHHHHHHHCCC
Q 024471 159 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGW---------------WMASDPTPPAPYVGGSLRALDNAFTWAGYAFF 223 (267)
Q Consensus 159 ~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgy---------------w~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL 223 (267)
+.+..-|++|+..+--+.+..-|+-.+-+.=|. |..... .+| .++|+-+...++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~--tdp--~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQ--TDP--IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecC--CCc--hHHhhHHHHHHHHHHhcCC
Confidence 457777999999999998888777766555333 221111 122 2368888889999999999
Q ss_pred cEEEEcCCCCCCC
Q 024471 224 PVPSDITISVTTS 236 (267)
Q Consensus 224 ~VILDLH~~aPG~ 236 (267)
+|-|=.|- .||-
T Consensus 360 kVhil~HI-PpG~ 371 (577)
T KOG3770|consen 360 KVHILGHI-PPGD 371 (577)
T ss_pred EEEEEEee-CCCC
Confidence 99999999 8884
No 352
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.64 E-value=2.8e+02 Score=26.23 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=43.7
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 238 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN 238 (267)
.+-++++.--+.||+.|=| |.+ ..||.+ -++...++++.|.++|+-|=.-|-. +.|...
T Consensus 85 ~~~e~i~~Ai~~GftSVM~--------DgS-~l~~ee-Ni~~T~~vve~Ah~~gv~VEaElG~-vgg~ed 143 (283)
T PRK07998 85 KTFEDVKQAVRAGFTSVMI--------DGA-ALPFEE-NIAFTKEAVDFAKSYGVPVEAELGA-ILGKED 143 (283)
T ss_pred CCHHHHHHHHHcCCCEEEE--------eCC-CCCHHH-HHHHHHHHHHHHHHcCCEEEEEecc-CCCccc
Confidence 3556667666889999954 432 236644 6889999999999999998788888 766553
No 353
>PRK12414 putative aminotransferase; Provisional
Probab=23.62 E-value=68 Score=30.33 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+.+++++++|++||+.||+|-.-
T Consensus 180 s~~~~~~i~~~a~~~~~~ii~De~Y 204 (384)
T PRK12414 180 SAADLARLAQLTRNTDIVILSDEVY 204 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhhh
Confidence 3688999999999999999999665
No 354
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=23.61 E-value=83 Score=31.01 Aligned_cols=32 Identities=13% Similarity=-0.083 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 238 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN 238 (267)
|....++.+.++|+++|+.||+|--. +-|+.-
T Consensus 170 G~p~dl~~I~~la~~~gi~vIeDaa~-a~G~~~ 201 (438)
T PRK15407 170 GNPFDLAAVKAFCDKHNLWLIEDNCD-ALGSTY 201 (438)
T ss_pred CChhhHHHHHHHHHHCCCEEEEECcc-chhhhc
Confidence 34456889999999999999999766 556543
No 355
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.52 E-value=1e+02 Score=29.72 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCC---CCC-ccchHHHHHHHHHHHHHCCCc-E
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPP---APY-VGGSLRALDNAFTWAGYAFFP-V 225 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~---~P~-~~g~l~~LD~av~wA~k~GL~-V 225 (267)
-+|+++++.|+++|++.| -++-... ++.-. .|. ....++..-++++.|++.||. |
T Consensus 160 ~lt~e~l~~Lk~aGv~r~--~i~lET~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 160 PLSEEEYAELVELGLDGV--TVYQETY-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred CCCHHHHHHHHHcCCCEE--EEEEecC-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 378999999999999944 4433221 11000 000 012577777789999999996 6
No 356
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=23.47 E-value=2.4e+02 Score=26.78 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=40.2
Q ss_pred hcccCHHHHHHHHh---CCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEE
Q 024471 166 STYIVEDDFKFIAG---NGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 227 (267)
Q Consensus 166 ~tyITe~Df~~Ia~---~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VIL 227 (267)
.-.+++++++.|++ .++.+.+|+.-|..... ..-....+++|-+-++-|-+.|..+||
T Consensus 100 sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~----~~~L~~aL~~l~~ea~~Av~~G~~ilI 160 (287)
T PF04898_consen 100 SPILSNGQLEKLRSLDDPGFKAATLDATFPAEGG----DEGLEEALDRLCEEAEAAVREGANILI 160 (287)
T ss_dssp SSB--HHHHHHHHHH--CCCCEEEEESEEESTTS----TTCHHHHHHHHHHHHHHHHHCT-SEEE
T ss_pred CCEECHHHHHHHHHhhccCCCccEEEEEEECCcC----hhHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 35688999999988 59999999998875322 122334677777666777788988887
No 357
>PLN02231 alanine transaminase
Probab=23.37 E-value=78 Score=32.15 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..+.+.+++++|++||+.||.|-
T Consensus 289 s~e~l~~Iv~~a~~~~l~lI~DE 311 (534)
T PLN02231 289 AEENQRDIVEFCKQEGLVLLADE 311 (534)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 68999999999999999999994
No 358
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=23.24 E-value=73 Score=31.74 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.|.+++++|++|++.||+|--
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~ 322 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEI 322 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehh
Confidence 578899999999999999999964
No 359
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=23.17 E-value=4.7e+02 Score=24.36 Aligned_cols=72 Identities=25% Similarity=0.461 Sum_probs=50.4
Q ss_pred EEEEEeCCeEEEeecCCCCceEEEcc---CCCCCCCceEEEeCCCCCcceEEEcCCCceeeeeccceeeeeccCC---CC
Q 024471 52 FHFRVFNKQFIGLDTNGNGIDIVAES---NTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGA---TS 125 (267)
Q Consensus 52 f~~r~~~~~f~~~~~~g~~~~v~A~~---~~p~~~e~F~ivr~~~~~~~v~ika~nG~~lqa~~~~~vta~~~~~---e~ 125 (267)
-.+.+..+-++++..+|. -.+-|-- +-|.+.|.|..+.-.+ +||.||.--|+||-+...++|+..-... |-
T Consensus 50 v~ie~~~~~yl~a~dng~-ft~g~ph~~~~gp~p~e~f~avki~d--srIaLKsGyGKYlsinsdglvvg~qeAvG~~EQ 126 (246)
T KOG3962|consen 50 VAIEIDDGTYLGAMDNGL-FTLGAPHDEVDGPEPEEQFMAVKISD--SRIALKSGYGKYLSINSDGLVVGRQEAVGSREQ 126 (246)
T ss_pred EEEEecCceEEEEEecCc-eeeccCCccccCCCchhhEEEEEccC--ceEEecccccceeeecCCccEEEehhhcCcHhh
Confidence 344445566777665442 2222211 2688899999998763 8999999999999999999998775433 66
Q ss_pred c
Q 024471 126 W 126 (267)
Q Consensus 126 W 126 (267)
|
T Consensus 127 w 127 (246)
T KOG3962|consen 127 W 127 (246)
T ss_pred c
Confidence 7
No 360
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=23.07 E-value=80 Score=29.32 Aligned_cols=25 Identities=12% Similarity=-0.255 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.|++++++|++||+.||+|-=.
T Consensus 189 ~~~~l~~i~~l~~~~~~~~i~De~~ 213 (379)
T TIGR00707 189 SAEFLKALREICKDKDALLIFDEVQ 213 (379)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 5788999999999999999999543
No 361
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=22.96 E-value=78 Score=24.86 Aligned_cols=21 Identities=14% Similarity=-0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHHCCCcEEEEcCC
Q 024471 211 LDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 211 LD~av~wA~k~GL~VILDLH~ 231 (267)
++++.++|+++|+.+|+|--.
T Consensus 111 ~~~l~~~~~~~~~~li~D~a~ 131 (170)
T cd01494 111 LKEIRKIAKEYGILLLVDAAS 131 (170)
T ss_pred HHHHHHHHHHcCCEEEEeccc
Confidence 378889999999999999865
No 362
>PRK07683 aminotransferase A; Validated
Probab=22.86 E-value=80 Score=29.89 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..+.+++++++|+++|+.||+|---
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y 203 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIY 203 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 4688999999999999999999654
No 363
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.73 E-value=2.8e+02 Score=26.54 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
..+-+++++++|+++||.||--+= +||-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID--~PGH 111 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEID--MPGH 111 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecC--Cchh
Confidence 578999999999999999998764 4663
No 364
>PRK05826 pyruvate kinase; Provisional
Probab=22.72 E-value=1.8e+02 Score=29.32 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=34.2
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHC--CCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYA--FFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~--GL~VILDLH~ 231 (267)
+.+.++.|-+.|+|.+||-+.+=.. ....+.++++=+..++. .+.+++|+-+
T Consensus 18 ~~e~l~~li~~G~~v~RiN~sHg~~----------~~~~~~i~~ir~~~~~~~~~i~I~~Dl~G 71 (465)
T PRK05826 18 SPENLEKLIEAGVNVVRLNFSHGSH----------EEHGKRAALVREIAAKLGRPVAILLDLKG 71 (465)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCCCH----------HHHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5678899999999999998854321 11233344333344444 4889999877
No 365
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.69 E-value=2.6e+02 Score=25.83 Aligned_cols=27 Identities=19% Similarity=-0.053 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 204 VGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 204 ~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
.-|++....++...|+++||.|++--|
T Consensus 261 ~~GGi~~~~~~~~~a~~~gi~~~~~~~ 287 (316)
T cd03319 261 KTGGLTEALRIADLARAAGLKVMVGCM 287 (316)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEECc
Confidence 346788999999999999999998543
No 366
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=22.55 E-value=1.4e+02 Score=27.70 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCC-CCCCc
Q 024471 214 AFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVHNTPK-YGVPK 256 (267)
Q Consensus 214 av~wA~k~GL~VILDLH~~aPG~QN~~~hsG~~~~~~~-~~~~~ 256 (267)
..+...+.|..|.||||. -|-..=....||..+.... |..|+
T Consensus 125 ~~~~~~~~~~~~hiDlHe-yp~~E~~~~la~~~~~~~~~~~iP~ 167 (240)
T cd06232 125 RHQALAKSGAQLHVNLHG-YPAHEWTRPLSGYVPRGFESWTLPK 167 (240)
T ss_pred HHHHHHhhCCcEEEECCC-CCcccccccccccCCCCCcCCccCC
Confidence 334455668999999999 8877555556666654444 66665
No 367
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=22.51 E-value=78 Score=31.37 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEE-cCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSD-ITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILD-LH~ 231 (267)
.-+.|.++.+.|++||+.||-| +|+
T Consensus 176 t~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeecccc
Confidence 4688999999999999999998 676
No 368
>PTZ00376 aspartate aminotransferase; Provisional
Probab=22.48 E-value=82 Score=30.07 Aligned_cols=25 Identities=4% Similarity=-0.198 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.+.+++++++|++||+.||.|-.-
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y 218 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAY 218 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhh
Confidence 6899999999999999999999753
No 369
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=22.46 E-value=2.5e+02 Score=26.26 Aligned_cols=25 Identities=16% Similarity=-0.083 Sum_probs=22.1
Q ss_pred ccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 204 VGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 204 ~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
..|++....++.+.|+++||.+++-
T Consensus 239 ~~GGi~~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 239 IIGSPAKLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3467899999999999999999986
No 370
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=22.32 E-value=1.2e+02 Score=29.03 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=32.1
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHH--CCCcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGY--AFFPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k--~GL~VILDLH~ 231 (267)
+.+-++.|-+.|+|.+||-+++=.. +...+.++++=+.+++ ..+.+++|+-+
T Consensus 16 ~~e~l~~li~aGm~v~RiN~SHg~~----------e~~~~~i~~iR~a~~~~~~~i~IllDl~G 69 (348)
T PF00224_consen 16 SVEVLRKLIEAGMNVARINFSHGTH----------EEHKEIIENIREAEKELGKPIAILLDLKG 69 (348)
T ss_dssp SHHHHHHHHHHTEEEEEEETTSS-H----------HHHHHHHHHHHHHHHHTTTS-EEEEEE-T
T ss_pred CHHHHHHHHHhccEEEEEeeecCCH----------HHHHHHHHHHHHHHhccCCceEEEeccCC
Confidence 4667888999999999998864311 1133444443333444 34899999877
No 371
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=22.24 E-value=2.2e+02 Score=27.02 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=22.2
Q ss_pred CCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 202 PYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 202 P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
|...|++....+++..|+++|++|++-
T Consensus 270 ~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 270 IAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred ecccCCHHHHHHHHHHHHHcCCceeec
Confidence 334468899999999999999999863
No 372
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=22.20 E-value=82 Score=30.49 Aligned_cols=23 Identities=9% Similarity=-0.152 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-+++++++++|++||+-+|+|=
T Consensus 218 ~~~~~~~l~~l~~~~~~~lI~De 240 (425)
T PRK08088 218 SPAFMQRLRALCDEHGIMLIADE 240 (425)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 67889999999999999999994
No 373
>PLN02624 ornithine-delta-aminotransferase
Probab=22.15 E-value=81 Score=31.31 Aligned_cols=23 Identities=9% Similarity=-0.166 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+.+|+|=
T Consensus 243 ~~~~L~~l~~lc~~~gillI~DE 265 (474)
T PLN02624 243 PDGYLKAVRELCSKHNVLMIADE 265 (474)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 34579999999999999999995
No 374
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=22.15 E-value=1.4e+02 Score=28.04 Aligned_cols=30 Identities=7% Similarity=-0.096 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
|...-++.+.++|+++|+.+++|--. ..|.
T Consensus 154 G~~~~~~~I~~la~~~g~~~ivD~a~-~~g~ 183 (382)
T TIGR03403 154 GMIFPIKEIGEICKERGVLFHTDAVQ-AIGK 183 (382)
T ss_pred ccccCHHHHHHHHHHcCCEEEEechh-hcCC
Confidence 44455788999999999999999877 5554
No 375
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=22.07 E-value=86 Score=24.35 Aligned_cols=21 Identities=10% Similarity=-0.216 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCcEEEEcCC
Q 024471 211 LDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 211 LD~av~wA~k~GL~VILDLH~ 231 (267)
+..|++.|++.+-.|+|++|+
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~ 26 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQS 26 (114)
T ss_pred HHHHHHHHHhhCceEEEEEec
Confidence 567999999999999999999
No 376
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=22.05 E-value=2e+02 Score=29.25 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=34.8
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCC--CcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAF--FPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~G--L~VILDLH~ 231 (267)
+++-++.|-+.|+|.+||-+++=.. +...+.++.+=+.+++.| +.+++||-+
T Consensus 16 ~~e~l~~li~aG~~v~RiN~sHg~~----------~~~~~~i~~vr~~~~~~~~~i~il~Dl~G 69 (480)
T cd00288 16 SVENLKKLIKAGMNVARMNFSHGSH----------EYHQSRIDNVREAAEKTGGPVAIALDTKG 69 (480)
T ss_pred CHHHHHHHHHcCCCEEEEEcCCCCH----------HHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4677899999999999998754311 113444554445555555 678899876
No 377
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.99 E-value=2.8e+02 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
..+-+..+|++|+++||.||--+= .||-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID--~PGH 122 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEID--MPGH 122 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccC--Cchh
Confidence 578899999999999999997763 3554
No 378
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.87 E-value=3.6e+02 Score=24.15 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..++.+.++++.|++.|.+.++ +|.
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~-~~~ 106 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLV-FHP 106 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECC
Confidence 4789999999999999999765 455
No 379
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.85 E-value=3.1e+02 Score=25.90 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=48.2
Q ss_pred hhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC
Q 024471 164 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 238 (267)
Q Consensus 164 Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN 238 (267)
|.+---+.+++...-+.||+.| +.|... .||.+ -.+.-++++++|.++|+.|=--|-. ++|...
T Consensus 83 HLDHg~~~e~i~~ai~~GftSV--------M~DgS~-lp~ee-Ni~~Trevv~~Ah~~gv~VEaElG~-igg~ed 146 (285)
T PRK07709 83 HLDHGSSFEKCKEAIDAGFTSV--------MIDASH-HPFEE-NVETTKKVVEYAHARNVSVEAELGT-VGGQED 146 (285)
T ss_pred ECCCCCCHHHHHHHHHcCCCEE--------EEeCCC-CCHHH-HHHHHHHHHHHHHHcCCEEEEEEec-cCCccC
Confidence 4443446677777778899998 345432 47654 6899999999999999999999998 876554
No 380
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=21.83 E-value=86 Score=30.35 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|.++.+.|++||+-+|+|=
T Consensus 216 ~~~~l~~l~~lc~~~gillI~DE 238 (420)
T TIGR00700 216 AKGFVPALLDWCREHGIVFIADE 238 (420)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Confidence 56789999999999999999995
No 381
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=21.76 E-value=84 Score=30.07 Aligned_cols=23 Identities=9% Similarity=-0.233 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
..++|+++.+.|++||+-+|+|=
T Consensus 198 ~~~~l~~l~~lc~~~g~llI~DE 220 (397)
T TIGR03246 198 DPAFLKGLRELCDRHNALLIFDE 220 (397)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 57899999999999999999994
No 382
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.71 E-value=78 Score=29.97 Aligned_cols=25 Identities=12% Similarity=-0.090 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
...-|+++.+.|++||+.||+|--.
T Consensus 140 ~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 140 KVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCC
Confidence 3444888999999999999999865
No 383
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=21.69 E-value=2.6e+02 Score=27.98 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
=.|.++.+.+.++|++.|++=++--.........-.-...+..|.++.+.|+++++.||-|
T Consensus 277 v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viad 337 (486)
T PRK05567 277 VATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIAD 337 (486)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 3679999999999999999644311000000000000126888888888888999999985
No 384
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=21.68 E-value=4.1e+02 Score=22.78 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=40.3
Q ss_pred eeCCeEEEEE-eCCeEEEeecCCCCceEEEccCCCC---CC-CceEEEeCCCCCcceEEEc-CCCceee
Q 024471 47 INETNFHFRV-FNKQFIGLDTNGNGIDIVAESNTPR---SS-ETFEIVRNSNDLSRVRIKA-PNGFFLQ 109 (267)
Q Consensus 47 ~~~~~f~~r~-~~~~f~~~~~~g~~~~v~A~~~~p~---~~-e~F~ivr~~~~~~~v~ika-~nG~~lq 109 (267)
..+..-.+|. ++|+||.... .=|.|.++-|. .+ .-|.+|.-+ .+.++|+- -||.|+-
T Consensus 48 ~~dg~V~ik~~~~nKfWr~s~----~WI~a~s~d~~e~~sscTLF~Pv~~d--~~~i~lr~vq~~~~~~ 110 (139)
T smart00791 48 TYNGLVHIKSNYTNKFWRLSH----YWITADANDPDENKSACTLFRPLYVE--MKKIRLLNVQLGHYTK 110 (139)
T ss_pred cCCCcEEEEecCCCceEccCC----CEEEecCCCCccCCCcccEEeEEecc--CceEEEEEecCCceEE
Confidence 4455677887 6899999874 44888888772 23 348888853 46788876 6777775
No 385
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=21.54 E-value=1.2e+02 Score=22.42 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.9
Q ss_pred ceEEEeCCCCCcceEEEcCCCceee
Q 024471 85 TFEIVRNSNDLSRVRIKAPNGFFLQ 109 (267)
Q Consensus 85 ~F~ivr~~~~~~~v~ika~nG~~lq 109 (267)
.|+|-+..+-.-|.+|||.||..+.
T Consensus 4 kfei~kdk~Ge~rfrlkA~N~eiI~ 28 (59)
T COG3422 4 KFEIYKDKAGEYRFRLKAANGEIIL 28 (59)
T ss_pred eEEEEEcCCCcEEEEEEccCccEEE
Confidence 5888888766679999999998875
No 386
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.49 E-value=2.9e+02 Score=24.92 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 228 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILD 228 (267)
+.-++.+++.|++-|=||- .| .+.+++.++.|+++||+.++=
T Consensus 94 ~~fi~~~~~aG~~giiipD-----------l~-----~ee~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPD-----------LP-----PEEAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHHHHHHCCCcEEEECC-----------CC-----HHHHHHHHHHHHHcCCcEEEE
Confidence 5556778899999886651 13 357888999999999988764
No 387
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.48 E-value=2.7e+02 Score=28.74 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTSQDLT 240 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~~ 240 (267)
.-+-+.++|++|+-+||+|+.-+-. ||-...+
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~--PgHt~sW 279 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDT--PGHTGSW 279 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccC--Ccccccc
Confidence 3566788999999999999988754 6644433
No 388
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.47 E-value=2.7e+02 Score=24.72 Aligned_cols=51 Identities=16% Similarity=-0.023 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VI 226 (267)
++.++.++++||..|=|.+.-.. ....+..- .-..++.+-++++++||.|.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~----~~~~~~~~-~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESD----ERLARLDW-SKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcc----cccccccC-CHHHHHHHHHHHHHcCCCce
Confidence 77899999999999998753210 00001100 23457788889999999986
No 389
>PRK02948 cysteine desulfurase; Provisional
Probab=21.46 E-value=1.9e+02 Score=26.95 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=36.0
Q ss_pred HHHHhCCCCEEEeecccccccCC-------CCC-------CCC-ccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 175 KFIAGNGLNAVRIPVGWWMASDP-------TPP-------APY-VGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~~~d~-------~~~-------~P~-~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
+.++..|++.+.+|+......+. .+. .|. ..|...-++++.+.|+++|+.|++|.-.
T Consensus 106 ~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~ 177 (381)
T PRK02948 106 QSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ 177 (381)
T ss_pred HHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChh
Confidence 34566788888888752111111 000 121 2355666888999999999999999644
No 390
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.46 E-value=99 Score=29.29 Aligned_cols=55 Identities=18% Similarity=0.092 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHhCCCCEEEeec-ccccccCCCCCCCCcc-c-hHHHHHHHHHHHHHCCCcE
Q 024471 168 YIVEDDFKFIAGNGLNAVRIPV-GWWMASDPTPPAPYVG-G-SLRALDNAFTWAGYAFFPV 225 (267)
Q Consensus 168 yITe~Df~~Ia~~G~N~VRIPv-gyw~~~d~~~~~P~~~-g-~l~~LD~av~wA~k~GL~V 225 (267)
..+++.++.||++|++.+ +. +...+ ++.-..-... . ..+.--+++++|++.||+|
T Consensus 138 ~~~~e~l~~LkeAGl~~i--~~~~~E~~-~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 138 LSVEEALKRLKEAGLDSM--PGTAAEIL-DDEVRKVICPDKLSTAEWIEIIKTAHKLGIPT 195 (343)
T ss_pred CCHHHHHHHHHHhCcccc--cCcchhhc-CHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 356888999999999965 42 22221 1100000001 1 4444468999999999987
No 391
>PLN02461 Probable pyruvate kinase
Probab=21.45 E-value=2e+02 Score=29.55 Aligned_cols=52 Identities=15% Similarity=-0.012 Sum_probs=34.9
Q ss_pred CHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCC--CcEEEEcCC
Q 024471 170 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAF--FPVPSDITI 231 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~G--L~VILDLH~ 231 (267)
+++-++.|-+.|+|.+||-+.+= +. ....+.++++-+.+++.| +.+++|+-+
T Consensus 35 ~~e~l~~li~aGm~v~RlN~SHg---~~-------e~h~~~i~~vr~~~~~~g~~i~Il~Dl~G 88 (511)
T PLN02461 35 SVPMLEKLLRAGMNVARFNFSHG---SH-------EYHQETLDNLRQAMANTGILCAVMLDTKG 88 (511)
T ss_pred CHHHHHHHHHcCCCEEEEECCCC---CH-------HHHHHHHHHHHHHHHHcCCCeEEEeeCCC
Confidence 46678999999999999988542 11 113444555545555555 678899876
No 392
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.44 E-value=2.4e+02 Score=27.33 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=35.4
Q ss_pred cCHHHHHHHHhC--CCC-EEEeec-ccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 169 IVEDDFKFIAGN--GLN-AVRIPV-GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 169 ITe~Df~~Ia~~--G~N-~VRIPv-gyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
-+++|.+.|++. ++. .++|-+ .|- +.+..+|..-.-+.++++.+..+++|+.|.+=--.
T Consensus 265 Ds~e~a~~La~~l~~l~~~~~VnLIPyn----p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~ 327 (348)
T PRK14467 265 DSPEDALRLAQLIGKNKKKFKVNLIPFN----PDPELPYERPELERVYKFQKILWDNGISTFVRWSK 327 (348)
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEecCC----CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 347788777653 442 333331 222 12222343346778888899999999999986333
No 393
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=21.38 E-value=1.7e+02 Score=27.86 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=35.3
Q ss_pred hHHHHhhhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCC--CCccc-hHHHHHHHHHHHHHCCCcEE
Q 024471 158 PQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPA--PYVGG-SLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 158 ~~~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~--P~~~g-~l~~LD~av~wA~k~GL~VI 226 (267)
.+.|+.+|.+ |+.|++.+++.+=| ...+.+ +|..- .|+.|.++++|+++++..++
T Consensus 82 ~~hl~~~y~~------~~~i~~~~~DG~II--------TGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~L 139 (302)
T PRK05368 82 AEHLENFYCT------FEDIKDEKFDGLII--------TGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTL 139 (302)
T ss_pred HHHHHHhccC------HHHhccCCCCEEEE--------cCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 4455555433 67788888887733 222222 33322 48899999999999976665
No 394
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=21.30 E-value=88 Score=30.41 Aligned_cols=25 Identities=8% Similarity=-0.227 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
.-++|+++.+.|++||+.+|+|=-.
T Consensus 206 ~~~~l~~l~~l~~~~g~llI~DEv~ 230 (408)
T PRK04612 206 APGFLARVRALCDQHDALLVLDEIQ 230 (408)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3579999999999999999999643
No 395
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=21.15 E-value=83 Score=29.87 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 208 LRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
..-++++.+.|++||+.||+|.=.
T Consensus 165 ~~~~~~i~~~a~~~gi~vivD~a~ 188 (363)
T TIGR01437 165 MLSVEDAAQVAQEHNLPLIVDAAA 188 (363)
T ss_pred cCCHHHHHHHHHHcCCeEEEECCC
Confidence 334678899999999999999765
No 396
>COG4466 Veg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.08 E-value=1e+02 Score=23.99 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=25.6
Q ss_pred CcceEEEcCCCceeeeeccceeeeeccCCCCcCCcCccccccc
Q 024471 95 LSRVRIKAPNGFFLQAKTEELVTADYEGATSWGDDDPSVFEMT 137 (267)
Q Consensus 95 ~~~v~ika~nG~~lqa~~~~~vta~~~~~e~W~~i~Ps~F~~~ 137 (267)
+.+|.|++.+|+.-+.+..+.|. | -.||+|--.
T Consensus 19 G~~v~lk~ngGRKk~~~r~G~L~------E----tYpSvFIie 51 (80)
T COG4466 19 GERVTLKANGGRKKTIERSGILI------E----TYPSVFIIE 51 (80)
T ss_pred CcEEEEEecCCceeeehhceEEe------e----ecCcEEEEE
Confidence 46899999999999887777766 4 339999643
No 397
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=21.04 E-value=89 Score=30.40 Aligned_cols=23 Identities=4% Similarity=-0.185 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++++++.++|++||+-+|+|=
T Consensus 217 ~~~~l~~l~~lc~~~g~llI~DE 239 (421)
T PRK09792 217 PKELVAAIRRLCDEHGIVMIADE 239 (421)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 57889999999999999999994
No 398
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.04 E-value=2.2e+02 Score=29.59 Aligned_cols=48 Identities=25% Similarity=0.142 Sum_probs=36.3
Q ss_pred cCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 169 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 169 ITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
+.+.|++..++.|++.|||-..-- ..+-+..+++.|+++|+.|...+-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~ln--------------d~~n~~~~i~~ak~~G~~v~~~i~ 139 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALN--------------DPRNLQAAIQAAKKHGAHAQGTIS 139 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC--------------cHHHHHHHHHHHHHcCCEEEEEEE
Confidence 557788888999999999964211 125688888999999998887653
No 399
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=20.95 E-value=1.1e+02 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=17.6
Q ss_pred HHHHHHHHH-HHCCCcEEEEcCCCCCC
Q 024471 210 ALDNAFTWA-GYAFFPVPSDITISVTT 235 (267)
Q Consensus 210 ~LD~av~wA-~k~GL~VILDLH~~aPG 235 (267)
.|.+.++-. .++|.-|+||+|+ .|.
T Consensus 126 al~~~L~~~~~~~g~~~liD~HS-m~s 151 (263)
T TIGR02017 126 ALQAEIERLRAQHGYAVLYDAHS-IRS 151 (263)
T ss_pred HHHHHHHHHHHhCCCEEEEEecc-CCc
Confidence 344455443 6889999999998 554
No 400
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=20.94 E-value=1.1e+02 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
...-++++.++|+++|+.+|+|--. +.|.
T Consensus 118 ~~~~~~~i~~l~~~~~i~li~D~a~-~~g~ 146 (352)
T cd00616 118 NPADMDAIMAIAKRHGLPVIEDAAQ-ALGA 146 (352)
T ss_pred CcCCHHHHHHHHHHcCCeEEEECCC-CCCC
Confidence 3345788889999999999999876 5553
No 401
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=20.92 E-value=83 Score=29.12 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|...-++++++.|+++|+.|++|-..
T Consensus 153 G~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 153 GTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 34445789999999999999999744
No 402
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.89 E-value=1.9e+02 Score=29.04 Aligned_cols=56 Identities=18% Similarity=-0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCEEEeecc---cccc---cCC-CCCCCCc---cchHHHHHHHHHHHHHCCCcEE
Q 024471 171 EDDFKFIAGNGLNAVRIPVG---WWMA---SDP-TPPAPYV---GGSLRALDNAFTWAGYAFFPVP 226 (267)
Q Consensus 171 e~Df~~Ia~~G~N~VRIPvg---yw~~---~d~-~~~~P~~---~g~l~~LD~av~wA~k~GL~VI 226 (267)
.+-++.+..+|||+|=.-|. |-.. .-+ ..+-|++ ...++-|-.+|+.|+|.||.|+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~ 132 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVH 132 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeee
Confidence 44578899999999976663 2111 001 1111332 3478999999999999999996
No 403
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.80 E-value=3.3e+02 Score=27.02 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=47.5
Q ss_pred cccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCcc---chHHHHHHHHHHHHHCCCcEEEEcCCCCCCC
Q 024471 167 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG---GSLRALDNAFTWAGYAFFPVPSDITISVTTS 236 (267)
Q Consensus 167 tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~---g~l~~LD~av~wA~k~GL~VILDLH~~aPG~ 236 (267)
+-.+++-++.|+++|++-|-+.|. ..||.-.....+ -..+.+.++.+|+.+.+|.|+|---- +||-
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~---aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~-lPG~ 268 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVD---ALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVW-LPGV 268 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecc---cCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeee-cCCc
Confidence 557899999999999998877773 123310000111 16888889999999999999998777 7774
No 404
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.79 E-value=3.5e+02 Score=23.72 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCEEEeecccccccCCCCCCCCc--cchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCC
Q 024471 173 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 237 (267)
Q Consensus 173 Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~--~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~Q 237 (267)
-++..+.+|...|-+..+...- ...+..|-. ....+.+.++.+.|+++|+++-+--|. .||..
T Consensus 89 ~i~~a~~lg~~~vv~~~g~~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~-~~~~~ 153 (274)
T COG1082 89 AIELAKELGAKVVVVHPGLGAG-ADDPDSPEEARERWAEALEELAEIAEELGIGLALENHH-HPGNV 153 (274)
T ss_pred HHHHHHHcCCCeEEeecccCCc-CCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecC-Cccce
Confidence 4677789999999887764422 111001211 346899999999999999999999876 56653
No 405
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=20.69 E-value=90 Score=30.33 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHhhhhcccCHHHHHHHHhCCCCEEEeecc----cccc-cC-------C--------CCCCCC-ccchHHHHHHHHHHH
Q 024471 160 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVG----WWMA-SD-------P--------TPPAPY-VGGSLRALDNAFTWA 218 (267)
Q Consensus 160 ~l~~Hw~tyITe~Df~~Ia~~G~N~VRIPvg----yw~~-~d-------~--------~~~~P~-~~g~l~~LD~av~wA 218 (267)
+....|.+|. ..++-.|...|++|+. -|.. .+ + +|.+|- ..-..+.|..++++|
T Consensus 118 ip~P~Y~~y~-----~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a 192 (393)
T COG0436 118 IPDPGYPSYE-----AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELA 192 (393)
T ss_pred EeCCCCcCHH-----HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHH
Confidence 4445565443 5677889999999962 2211 11 0 233442 011689999999999
Q ss_pred HHCCCcEEEEc
Q 024471 219 GYAFFPVPSDI 229 (267)
Q Consensus 219 ~k~GL~VILDL 229 (267)
++||+.||-|-
T Consensus 193 ~~~~i~ii~DE 203 (393)
T COG0436 193 REHDIIIISDE 203 (393)
T ss_pred HHcCeEEEEeh
Confidence 99999999994
No 406
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=20.68 E-value=1e+02 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.1
Q ss_pred CHHHHHHHHhCCCCEEEeec
Q 024471 170 VEDDFKFIAGNGLNAVRIPV 189 (267)
Q Consensus 170 Te~Df~~Ia~~G~N~VRIPv 189 (267)
+++|++.|++.|+..|.|=.
T Consensus 37 s~~~I~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 37 SQADIEKLRRLGIQEVYIDP 56 (128)
T ss_pred CHHHHHHHHHCCCcEEEEEC
Confidence 78999999999999999944
No 407
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=20.52 E-value=57 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=15.8
Q ss_pred HHHHhCCCCEEEeeccccc
Q 024471 175 KFIAGNGLNAVRIPVGWWM 193 (267)
Q Consensus 175 ~~Ia~~G~N~VRIPvgyw~ 193 (267)
+.|+.+|.+.|.||.--|.
T Consensus 25 r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 25 RHLKALGYKVISIPYYEWN 43 (58)
T ss_pred HHHHHCCCEEEEecHHHHH
Confidence 4688999999999986664
No 408
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.50 E-value=81 Score=30.28 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCcEEEEcCC
Q 024471 211 LDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 211 LD~av~wA~k~GL~VILDLH~ 231 (267)
|+.++..|++.+|.+++|+|.
T Consensus 201 l~evL~lc~e~~iP~v~D~hH 221 (312)
T TIGR00629 201 VEDLLPVCEELNIPFVLDFHH 221 (312)
T ss_pred HHHHHHHHHhcCCCEEEEhHH
Confidence 688999999999999999997
No 409
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=20.48 E-value=94 Score=30.22 Aligned_cols=23 Identities=9% Similarity=-0.149 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+-+|+|=
T Consensus 217 ~~~~l~~l~~lc~~~g~llI~DE 239 (421)
T PRK06777 217 PPEFMSALRTLCDEHGILLIADE 239 (421)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 57899999999999999999995
No 410
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=20.46 E-value=93 Score=29.83 Aligned_cols=23 Identities=9% Similarity=-0.308 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|+++.+.|++||+-+|+|=
T Consensus 214 ~~~~l~~l~~l~~~~~~llI~DE 236 (423)
T TIGR00713 214 KPEFLAGLRALTEEYGSLLIFDE 236 (423)
T ss_pred CHHHHHHHHHHHHHhCCEEEEEc
Confidence 35889999999999999999994
No 411
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=20.44 E-value=94 Score=30.49 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEc
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDL 229 (267)
.-++|.++.++|++||+-+|.|=
T Consensus 238 ~~~~l~~l~~l~~~~gillI~DE 260 (451)
T PRK06918 238 SKKFVQEVRNICSEHGILFVADE 260 (451)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46889999999999999999994
No 412
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=20.28 E-value=2.9e+02 Score=26.04 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=48.9
Q ss_pred hhhcccCHHHHHHHHhCCCCEEEeecccccccCCCCCCCCccchHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCC
Q 024471 164 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDL 239 (267)
Q Consensus 164 Hw~tyITe~Df~~Ia~~G~N~VRIPvgyw~~~d~~~~~P~~~g~l~~LD~av~wA~k~GL~VILDLH~~aPG~QN~ 239 (267)
|.+---+.++++.--+.||+.| +.|.+. -||.+ -++.-.++++.|..+|+.|=--|-. ++|...+
T Consensus 78 HLDHg~~~e~i~~ai~~GFtSV--------M~DgS~-lp~ee-Ni~~T~~vv~~Ah~~gv~VEaElG~-vgg~e~~ 142 (282)
T TIGR01858 78 HLDHHESLDDIRQKVHAGVRSA--------MIDGSH-FPFAQ-NVKLVKEVVDFCHRQDCSVEAELGR-LGGVEDD 142 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEE--------eecCCC-CCHHH-HHHHHHHHHHHHHHcCCeEEEEEEe-cCCccCC
Confidence 3443446677887788999999 345432 36654 6899999999999999999999998 8766643
No 413
>PLN02397 aspartate transaminase
Probab=20.27 E-value=99 Score=29.97 Aligned_cols=24 Identities=4% Similarity=-0.230 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 207 SLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 207 ~l~~LD~av~wA~k~GL~VILDLH 230 (267)
..+.++++++.|++||+.||.|--
T Consensus 212 s~e~l~~i~~~a~~~~~~vI~De~ 235 (423)
T PLN02397 212 TPEQWEQISDLIKSKNHLPFFDSA 235 (423)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecc
Confidence 679999999999999999999954
No 414
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=20.24 E-value=99 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEcC
Q 024471 206 GSLRALDNAFTWAGYAFFPVPSDIT 230 (267)
Q Consensus 206 g~l~~LD~av~wA~k~GL~VILDLH 230 (267)
|...-++++.++|++||+.+|+|-=
T Consensus 139 G~~~~~~~i~~l~~~~~~~livD~~ 163 (355)
T TIGR03301 139 GILNPLEAIAKVARSHGAVLIVDAM 163 (355)
T ss_pred cchhHHHHHHHHHHHcCCEEEEEec
Confidence 4555689999999999999999953
No 415
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=20.14 E-value=98 Score=29.45 Aligned_cols=22 Identities=9% Similarity=-0.183 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCcEEEEc
Q 024471 208 LRALDNAFTWAGYAFFPVPSDI 229 (267)
Q Consensus 208 l~~LD~av~wA~k~GL~VILDL 229 (267)
-++|+++.+.|++||+-+|+|-
T Consensus 206 ~~~l~~l~~l~~~~~~lli~DE 227 (401)
T TIGR01885 206 DGYLKKVRELCTKHNVLLIADE 227 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEec
Confidence 3579999999999999999995
No 416
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=87 Score=31.59 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.7
Q ss_pred CccchHHHHHHHHHHHHHCCCcEEEEcCC
Q 024471 203 YVGGSLRALDNAFTWAGYAFFPVPSDITI 231 (267)
Q Consensus 203 ~~~g~l~~LD~av~wA~k~GL~VILDLH~ 231 (267)
|-.|.|.....+|++|++.|+.|+||--+
T Consensus 152 Y~KG~L~~~q~~I~~ar~~~~pVLvDPKg 180 (467)
T COG2870 152 YAKGVLTNVQKMIDLAREAGIPVLVDPKG 180 (467)
T ss_pred cccccchhHHHHHHHHHHcCCcEEECCCC
Confidence 44567777999999999999999999655
Done!