BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024472
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GEZ|B Chain B, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|D Chain D, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|F Chain F, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|H Chain H, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 133
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/130 (82%), Positives = 119/130 (91%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRH 193
TVGCVAVD+ GNLA+ATSTGGLVNKMVGRIGDTP+IG+GTYAN LCAVSATGKGE IIR
Sbjct: 1 TVGCVAVDSHGNLASATSTGGLVNKMVGRIGDTPLIGAGTYANELCAVSATGKGEEIIRA 60
Query: 194 TVARDVAAVMEFKGLSLKEASAYVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACAT 253
TVARDVAA+MEFKGLSLKEA+ +V+ E P+G VGLIAVSA+GE+ MPFNTTGMFRACAT
Sbjct: 61 TVARDVAALMEFKGLSLKEAADFVIHERTPKGTVGLIAVSAAGEIAMPFNTTGMFRACAT 120
Query: 254 EDGYSQIGIW 263
EDGYS+I IW
Sbjct: 121 EDGYSEIAIW 130
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 47/293 (16%)
Query: 5 IALHGGAGDIPVTMPPERRQPRE-AALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPN 63
IA+HGGAG I +++ R AL ++ G L++ + A P
Sbjct: 5 IAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPL 64
Query: 64 FNAGKGSVLTNAGTVEMEACIMDGNTKRWG----VWH---------------PSLALIAL 104
FNAG G+V T T E++AC+MDGNT + G V H P + +I
Sbjct: 65 FNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGE 124
Query: 105 AEHEIDYSQPIQK----------DVEKELPAASGGS--------------QLGTVGCVAV 140
+++ +++ E+ L A G+ ++G VG VA+
Sbjct: 125 GAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDEKQKMGAVGAVAL 184
Query: 141 DNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANNL-CAVSATGKGEAIIRHTVARDV 199
D GNLAAATSTGG+ NK+ GR+GD+P++G+G YANN AVS TG GE IR A D+
Sbjct: 185 DLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDI 244
Query: 200 AAVMEFKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRA 250
AA+M++ GLSL EA VV E +P G+ GLIA+ G V +PFNT GM+RA
Sbjct: 245 AALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 297
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 100/190 (52%), Gaps = 58/190 (30%)
Query: 2 GWAIALHGGAGDIPVTMPPERRQPREAALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNN 61
GW+IALHGGAGDIP ++PPERR+PRE LRHCL IGV+ALK+QK N
Sbjct: 6 GWSIALHGGAGDIPFSLPPERRKPREEGLRHCLQIGVEALKAQKPPLDVVELVVRELENI 65
Query: 62 PNFNAGKGSVLTNAGTVEMEACIMDGNTKRWG-------VWHP-SLALIAL--------- 104
+FNAG GSVLTN+GTVEMEA IMDGNT + G V +P SLA + +
Sbjct: 66 EHFNAGIGSVLTNSGTVEMEASIMDGNTMKCGAVSGLSTVLNPISLARLVMDKTPHIYLA 125
Query: 105 -----------------------AEH-------------EIDYSQ-----PIQKDVEKEL 123
AE+ ++DYSQ P++ D EKEL
Sbjct: 126 FQGAQDFAKQQGVETVDSSHLITAENVERLKLAIEANRVQVDYSQYNYPEPVKDDAEKEL 185
Query: 124 PAASGGSQLG 133
P +G SQ+G
Sbjct: 186 PLTNGDSQIG 195
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 3/120 (2%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANNL-CAVSATGKGEAIIR 192
TVG VA+D GNLAAATSTGG+ NK+ GR+GD+P++G+G YANN AVS TG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 193 HTVARDVAAVMEFKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRA 250
A D+AA+M++ GLSL EA VV E +P G+ GLIA+ G V +PFNT GM+RA
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 103 ALAEHEI----DY-----SQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTG 153
ALA ++I DY ++ ++ V ++LPA G G +A+D++GN+A +T
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSG-----GLIAIDHEGNVALPFNTE 115
Query: 154 GLVNKMVGRIGDTPIIG 170
G+ + G GDTP G
Sbjct: 116 GMY-RAWGYAGDTPTTG 131
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 3/120 (2%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANNL-CAVSATGKGEAIIR 192
TVG VA+D GNLAAATSTGG+ NK+ GR+GD+P++G+G YANN AVS TG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 193 HTVARDVAAVMEFKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRA 250
A D+AA+M++ GLSL EA VV E +P G+ GLIA+ G V +PFNT GM+RA
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 103 ALAEHEI----DY-----SQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTG 153
ALA ++I DY ++ ++ V ++LPA G G +A+D++GN+A +T
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSG-----GLIAIDHEGNVALPFNTE 115
Query: 154 GLVNKMVGRIGDTPIIG 170
G+ + G GDTP G
Sbjct: 116 GMY-RAWGYAGDTPTTG 131
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 3/120 (2%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANNL-CAVSATGKGEAIIR 192
TVG VA+D GNLAAATSTGG+ NK+ GR+GD+P++G+G YANN AVS TG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 193 HTVARDVAAVMEFKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRA 250
A D+AA+M++ GLSL EA VV E +P G+ GLIA+ G V +PFNT GM+RA
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 103 ALAEHEI----DY-----SQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTG 153
ALA ++I DY ++ ++ V ++LPA G G +A+D++GN+A +T
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSG-----GLIAIDHEGNVALPFNTE 115
Query: 154 GLVNKMVGRIGDTPIIG 170
G+ + G GDTP G
Sbjct: 116 GMY-RAWGYAGDTPTTG 131
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 149/300 (49%), Gaps = 49/300 (16%)
Query: 5 IALHGGAGDIPVTMPPERRQPREAALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPNF 64
+ +HGG G P++ +R++ + +G L+ A ++P F
Sbjct: 7 VVVHGG-GAGPIS--KDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEF 63
Query: 65 NAGKGSVLTNAGTVEMEACIMDGNTKRWG-------VWHP-SLALIALAEH--------- 107
NAG GSVL G VEM+A IMDG G + +P LA + + +
Sbjct: 64 NAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQG 123
Query: 108 ---------------EIDYSQPIQKDVEKELPAASGGSQ-------LGTVGCVAVDNQGN 145
E ++ +K +EKE G+Q LGTVG VA+D +GN
Sbjct: 124 AAQFAAAMGVPEIPGEKLVTERNKKRLEKE--KHEKGAQKTDCQKNLGTVGAVALDCKGN 181
Query: 146 LAAATSTGGLVNKMVGRIGDTPIIGSGTYA-NNLCAVSATGKGEAIIRHTVARDVAAVME 204
+A ATSTGG+VNKMVGR+GD+P +G+G YA N++ AVS TG GE+I++ +AR +E
Sbjct: 182 VAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIE 241
Query: 205 FKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRACATEDGYSQIGI 262
+G +++EA+ + R G GLI VS +G+ + +T M A A +DG GI
Sbjct: 242 -QGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWAAA-KDGKLHFGI 299
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 49/300 (16%)
Query: 5 IALHGGAGDIPVTMPPERRQPREAALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPNF 64
+ +HGG G P++ +R++ + +G L+ A ++P F
Sbjct: 16 VVVHGG-GAGPIS--KDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEF 72
Query: 65 NAGKGSVLTNAGTVEMEACIMDGNTKRWG-------VWHP-SLALIALAEH--------- 107
NAG GSVL G VEM+A IMDG G + +P LA + + +
Sbjct: 73 NAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQG 132
Query: 108 ---------------EIDYSQPIQKDVEKELPAASGGSQ-------LGTVGCVAVDNQGN 145
E ++ +K +EKE G+Q LG VG VA+D +GN
Sbjct: 133 AAQFAAAMGVPEIPGEKLVTERNKKRLEKE--KHEKGAQKTDCQKNLGAVGAVALDCKGN 190
Query: 146 LAAATSTGGLVNKMVGRIGDTPIIGSGTYA-NNLCAVSATGKGEAIIRHTVARDVAAVME 204
+A ATSTGG+VNKMVGR+GD+P +G+G YA N++ AVS TG GE+I++ +AR +E
Sbjct: 191 VAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLARLTLFHIE 250
Query: 205 FKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRACATEDGYSQIGI 262
+G +++EA+ + R G GLI VS +G+ + +T M A A +DG GI
Sbjct: 251 -QGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWAAA-KDGKLHFGI 308
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 149/307 (48%), Gaps = 56/307 (18%)
Query: 5 IALHGGAGDIPVTMPPERRQPREAALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPNF 64
+ +HGG G P++ +R++ + +G L+ A ++P F
Sbjct: 5 VVVHGG-GAGPIS--KDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEF 61
Query: 65 NAGKGSVLTNAGTVEMEACIMDGNTKRWG-------VWHP-SLALIALAEH--------- 107
NAG GSVL G VEM+A IMDG G + +P LA + + +
Sbjct: 62 NAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQG 121
Query: 108 ---------------EIDYSQPIQKDVEKELPAASGGSQ-------LG-------TVGCV 138
E ++ +K +EKE G+Q LG TVG V
Sbjct: 122 AAQFAAAMGVPEIPGEKLVTERNKKRLEKE--KHEKGAQKTDCQKNLGHHHHHHMTVGAV 179
Query: 139 AVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYA-NNLCAVSATGKGEAIIRHTVAR 197
A+D +GN+A ATSTGG+VNKMVGR+GD+P +G+G YA N++ AVS TG GE+I++ +AR
Sbjct: 180 ALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESILKVNLAR 239
Query: 198 DVAAVMEFKGLSLKEASAYVVEECVPR--GNVGLIAVSASGEVTMPFNTTGMFRACATED 255
+E +G +++EA+ + R G GLI VS +G+ + +T M A A +D
Sbjct: 240 LTLFHIE-QGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWAAA-KD 297
Query: 256 GYSQIGI 262
G GI
Sbjct: 298 GKLHFGI 304
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 76 GTVEMEACIMDGNTKRWGV------------------WHPSLALIALAEHEIDYSQPIQK 117
G V ++ACIMD N V P + L+ E SQ +K
Sbjct: 61 GRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKK 120
Query: 118 D------VEKELPAASGGSQL---------GTVGCVAVDNQGNLAAATSTGGLVNKMVGR 162
+ EKE SQ T+G +A+D QGNL+ A +T G+ KM GR
Sbjct: 121 ENLLTAESEKEWKEWLKTSQYKPIVNIENHNTIGMIALDAQGNLSGACTTSGMAYKMHGR 180
Query: 163 IGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASAYVVEEC 221
+GD+PIIG+G + +N + A +ATG GE +IR TV + + +G + ++A VE
Sbjct: 181 VGDSPIIGAGLFVDNEIGAATATGHGEEVIR-TVGTHLVVELMNQGRTPQQACKEAVERI 239
Query: 222 VP----RG------NVGLIAVSASGE 237
V RG VG IA++ GE
Sbjct: 240 VKIVNRRGKNLKDIQVGFIALNKKGE 265
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 76 GTVEMEACIMDGNTKRWGV------------------WHPSLALIALAEHEIDYSQPIQK 117
G V ++ACIMD N V P + L+ E SQ +K
Sbjct: 61 GRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKK 120
Query: 118 D------VEKELPAASGGSQL---------GTVGCVAVDNQGNLAAATSTGGLVNKMVGR 162
+ EKE SQ T+G +A+D QGNL+ A +T G+ KM GR
Sbjct: 121 ENLLTAESEKEWKEWLKTSQYKPIVNIENHDTIGMIALDAQGNLSGACTTSGMAYKMHGR 180
Query: 163 IGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASAYVVEEC 221
+GD+PIIG+G + +N + A +ATG GE +IR TV + + +G + ++A VE
Sbjct: 181 VGDSPIIGAGLFVDNEIGAATATGHGEEVIR-TVGTHLVVELMNQGRTPQQACKEAVERI 239
Query: 222 VP----RG------NVGLIAVSASGE 237
V RG VG IA++ GE
Sbjct: 240 VKIVNRRGKNLKDIQVGFIALNKKGE 265
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 12/115 (10%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANN-LCAVSATGKGEAIIR 192
T+G +A+D QGNL+ A +T G+ KM GR+GD+PIIG+G + +N + A +ATG GE +IR
Sbjct: 1 TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 60
Query: 193 HTVARDVAAVMEFKGLSLKEASAYVVEECVP----RG------NVGLIAVSASGE 237
TV + + +G + ++A VE V RG VG IA++ GE
Sbjct: 61 -TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGE 114
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 93/206 (45%), Gaps = 45/206 (21%)
Query: 76 GTVEMEACIMDGNTKRWGV------------------WHPSLALIALAEHEIDYSQPIQK 117
G V ++ACIMD N V P + L+ E SQ +K
Sbjct: 61 GRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKK 120
Query: 118 D------VEKELPAASGGSQL---------GTVGCVAVDNQGNLAAATSTGGLVNKMVGR 162
+ EKE SQ +G +A+D QGNL+ A +T G+ KM GR
Sbjct: 121 ENLLTAESEKEWKEWLKTSQYKPIVNIENHDAIGMIALDAQGNLSGACTTSGMAYKMHGR 180
Query: 163 IGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASAYVVEEC 221
+GD+PIIG+G + +N + A +ATG GE +IR TV + + +G + ++A VE
Sbjct: 181 VGDSPIIGAGLFVDNEIGAATATGHGEEVIR-TVGTHLVVELMNQGRTPQQACKEAVERI 239
Query: 222 VP----RG------NVGLIAVSASGE 237
V RG VG IA++ GE
Sbjct: 240 VKIVNRRGKNLKDIQVGFIALNKKGE 265
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 93/206 (45%), Gaps = 45/206 (21%)
Query: 76 GTVEMEACIMDGNTKRWGV------------------WHPSLALIALAEHEIDYSQPIQK 117
G V ++ACIMD N V P + L+ E SQ +K
Sbjct: 61 GRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKK 120
Query: 118 D------VEKELPAASGGSQL---------GTVGCVAVDNQGNLAAATSTGGLVNKMVGR 162
+ EKE SQ +G +A+D QGNL+ A +T G+ KM GR
Sbjct: 121 ENLLTAESEKEWKEWLKTSQYKPIVNIENHDCIGMIALDAQGNLSGACTTSGMAYKMHGR 180
Query: 163 IGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASAYVVEEC 221
+GD+PIIG+G + +N + A +ATG GE +IR TV + + +G + ++A VE
Sbjct: 181 VGDSPIIGAGLFVDNEIGAATATGHGEEVIR-TVGTHLVVELMNQGRTPQQACKEAVERI 239
Query: 222 VP----RG------NVGLIAVSASGE 237
V RG VG IA++ GE
Sbjct: 240 VKIVNRRGKNLKDIQVGFIALNKKGE 265
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 93/206 (45%), Gaps = 45/206 (21%)
Query: 76 GTVEMEACIMDGNTKRWGV------------------WHPSLALIALAEHEIDYSQPIQK 117
G V ++ACIMD N V P + L+ E SQ +K
Sbjct: 65 GRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKK 124
Query: 118 D------VEKELPAASGGSQL---------GTVGCVAVDNQGNLAAATSTGGLVNKMVGR 162
+ EKE SQ +G +A+D QGNL+ A +T G+ KM GR
Sbjct: 125 ENLLTAESEKEWKEWLKTSQYKPIVNIENHDCIGMIALDAQGNLSGACTTSGMAYKMHGR 184
Query: 163 IGDTPIIGSGTYANN-LCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASAYVVEEC 221
+GD+PIIG+G + +N + A +ATG GE +IR TV + + +G + ++A VE
Sbjct: 185 VGDSPIIGAGLFVDNEIGAATATGHGEEVIR-TVGTHLVVELMNQGRTPQQACKEAVERI 243
Query: 222 VP----RG------NVGLIAVSASGE 237
V RG VG IA++ GE
Sbjct: 244 VKIVNRRGKNLKDIQVGFIALNKKGE 269
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 12/114 (10%)
Query: 135 VGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTYANN-LCAVSATGKGEAIIRH 193
+G +A+D QGNL+ A +T G+ KM GR+GD+PIIG+G + +N + A +ATG GE +IR
Sbjct: 2 IGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR- 60
Query: 194 TVARDVAAVMEFKGLSLKEASAYVVEECVP----RG------NVGLIAVSASGE 237
TV + + +G + ++A VE V RG VG IA++ GE
Sbjct: 61 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGE 114
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 102 IALAEH-EIDYSQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTGGLVNKMV 160
+ LAE + D+ Q ++ E SG L TVG V VD++GN+AAA S+GGL K
Sbjct: 203 LELAERVDTDFXQLKKRRQSSEKENDSG--TLDTVGAVVVDHEGNVAAAVSSGGLALKHP 260
Query: 161 GRIGDTPIIGSGTYANNL-------CAVSATGKGEAIIRHTVARDVAAVME 204
GR+G + G G +A N AVS +G GE ++R +AR+ + ++
Sbjct: 261 GRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 102 IALAEH-EIDYSQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTGGLVNKMV 160
+ LAE + D+ Q ++ E SG L TVG V VD++GN+AAA S+GGL K
Sbjct: 203 LELAERVDTDFMQLKKRRQSSEKENDSG--TLDTVGAVVVDHEGNVAAAVSSGGLALKHP 260
Query: 161 GRIGDTPIIGSGTYANNL-------CAVSATGKGEAIIRHTVARDVAAVME 204
GR+G + G G +A N AVS +G GE ++R +AR+ + ++
Sbjct: 261 GRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 102 IALAEH-EIDYSQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTGGLVNKMV 160
+ LAE + D+ Q ++ E SG L +VG V VD++GN+AAA S+GGL K
Sbjct: 203 LELAERVDTDFMQLKKRRQSSEKENDSG--TLDSVGAVVVDHEGNVAAAVSSGGLALKHP 260
Query: 161 GRIGDTPIIGSGTYANNL-------CAVSATGKGEAIIRHTVARDVAAVME 204
GR+G + G G +A N AVS +G GE ++R +AR+ + ++
Sbjct: 261 GRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 102 IALAEH-EIDYSQPIQKDVEKELPAASGGSQLGTVGCVAVDNQGNLAAATSTGGLVNKMV 160
+ LAE + D+ Q ++ E SG L VG V VD++GN+AAA S+GGL K
Sbjct: 203 LELAERVDTDFMQLKKRRQSSEKENDSG--TLDAVGAVVVDHEGNVAAAVSSGGLALKHP 260
Query: 161 GRIGDTPIIGSGTYANNL-------CAVSATGKGEAIIRHTVARDVAAVME 204
GR+G + G G +A N AVS +G GE ++R +AR+ + ++
Sbjct: 261 GRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|1JN9|A Chain A, Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1JN9|C Chain C, Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|A Chain A, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|C Chain C, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 177
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 5 IALHGGAGDIPVTMPPERRQPRE-AALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPN 63
IA+HGGAG I +++ R AL ++ G L++ + A P
Sbjct: 5 IAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEEXPL 64
Query: 64 FNAGKGSVLTNAGTVEMEACIMDGNTKRWG 93
FNAG G+V T T E++AC+MDGNT + G
Sbjct: 65 FNAGIGAVFTRDETHELDACVMDGNTLKAG 94
>pdb|2ZAL|C Chain C, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With
L-Aspartate
pdb|2ZAL|A Chain A, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With
L-Aspartate
Length = 160
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 5 IALHGGAGDIPVTMPPERRQPRE-AALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPN 63
IA+HGGAG I +++ R AL ++ G L++ + A P
Sbjct: 5 IAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPL 64
Query: 64 FNAGKGSVLTNAGTVEMEACIMDGNTKRWG 93
FNAG G+V T T E++AC+MDGNT + G
Sbjct: 65 FNAGIGAVFTRDETHELDACVMDGNTLKAG 94
>pdb|1T3M|A Chain A, Structure Of The Isoaspartyl Peptidase With
L-Asparaginase Activity From E. Coli
pdb|1T3M|C Chain C, Structure Of The Isoaspartyl Peptidase With
L-Asparaginase Activity From E. Coli
Length = 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 5 IALHGGAGDIPVTMPPERRQPRE-AALRHCLDIGVDALKSQKHAXXXXXXXXXXXXNNPN 63
IA+HGGAG I +++ R AL ++ G L++ + A P
Sbjct: 5 IAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPL 64
Query: 64 FNAGKGSVLTNAGTVEMEACIMDGNTKRWG 93
FNAG G+V T T E++AC+MDGNT + G
Sbjct: 65 FNAGIGAVFTRDETHELDACVMDGNTLKAG 94
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 134 TVGCVAVDNQGNLAAATSTGGLVNKMVGRIGDTPIIGSGTY 174
T+G V + G++AA TST G+ K+ GR+GD+PI G+G Y
Sbjct: 1 TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAY 41
>pdb|3RBX|A Chain A, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|B Chain B, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|C Chain C, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|D Chain D, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|E Chain E, Mthk Rck Domain D184n Mutant, Ca2+-Bound
pdb|3RBX|F Chain F, Mthk Rck Domain D184n Mutant, Ca2+-Bound
Length = 234
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 42 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--NLESDSETIHCILGIRKIDESV 99
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 100 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 141
>pdb|2FY8|A Chain A, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|B Chain B, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|C Chain C, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|D Chain D, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|E Chain E, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|F Chain F, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|G Chain G, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
pdb|2FY8|H Chain H, Crystal Structure Of Mthk Rck Domain In Its Ligand-Free
Gating-Ring Form
Length = 230
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 42 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--NLESDSETIHCILGIRKIDESV 99
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 100 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 141
>pdb|3KXD|A Chain A, Crystal Structure Of The Mthk Rck In Complex With Cadmium
pdb|3KXD|B Chain B, Crystal Structure Of The Mthk Rck In Complex With Cadmium
Length = 224
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 33 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--DLESDSETIHCILGIRKIDESV 90
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 91 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 132
>pdb|4EI2|A Chain A, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|B Chain B, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|C Chain C, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|D Chain D, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|E Chain E, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|F Chain F, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|G Chain G, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|H Chain H, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|I Chain I, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|J Chain J, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|K Chain K, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|L Chain L, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|M Chain M, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|N Chain N, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|O Chain O, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
pdb|4EI2|P Chain P, Crystal Structures Of Mthk Rck Gating Ring Bound To Barium
Length = 242
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 42 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--DLESDSETIHCILGIRKIDESV 99
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 100 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 141
>pdb|3L6P|A Chain A, Crystal Structure Of Dengue Virus 1 Ns2bNS3 PROTEASE
Length = 236
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 133 GTVGCVAVDNQGNLAAATSTGGLVN---KMVGRIGDTPIIGSGTYANNLCAVSATGKG 187
G VG +A+D TS +VN K+VG G+ + SGTY + + A+ +G
Sbjct: 171 GEVGAIALD----FKPGTSGSPIVNREGKIVGLYGNGVVTTSGTYVSAIAQAKASQEG 224
>pdb|2AEF|A Chain A, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEF|B Chain B, Crystal Structures Of The Mthk Rck Domain In Ca2+ Bound
Form
pdb|2AEJ|A Chain A, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEJ|B Chain B, Crystal Structures Of The Mthk Rck Domain In No Ca2+ Bound
Form
pdb|2AEM|A Chain A, Crystal Structures Of The Mthk Rck Domain
Length = 234
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 42 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--DLESDSETIHCILGIRKIDESV 99
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 100 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 141
>pdb|2OGU|A Chain A, Crystal Structure Of The Isolated Mthk Rck Domain
Length = 233
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 156 VNKMVGRIGDTPIIGSGTYANNLCAVSATGKGEAIIRHTVARDVAAVMEFKGLSLKEASA 215
V K V R G + G T ++L + G I+ + D + G+ + S
Sbjct: 45 VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV--DLESDSETIHCILGIRKIDESV 102
Query: 216 YVVEECVPRGNVGLIAVSASGEVTMPFNTTGMFRACATEDGY 257
++ E N+ + ++ + +V PF +G + + +DGY
Sbjct: 103 RIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGY 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,037,015
Number of Sequences: 62578
Number of extensions: 314243
Number of successful extensions: 659
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 83
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)