BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024473
MGTISCTNTVSLNGACTRFFAADSLSSKASSVFFNNRTWKLKLRPLVASSSSSSMATNFQ
VTASSSIGAVKEEQKGASSGGVGENDLLIVGPGVLGRLVAEQWRQEHPGCQIYGQTMTAD
HHDELINMGITPSLKWTEATQKFPYVIFCAPPSRSLDYPGDVRLAALSWNGEGSFLFTSS
SAIYDCSDNGACDEDSPVVPIGRSPRTDVLLKAEKVILEFGGCVLRLAGLYISLCYLVEK
FQGLPLLLKSPGIFSANWHYICVKLNY

High Scoring Gene Products

Symbol, full name Information P value
EMB2799
EMBRYO DEFECTIVE 2799 		protein from Arabidopsis thaliana 4.5e-66

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024473
        (267 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2065001 - symbol:EMB2799 "EMBRYO DEFECTIVE 279...   672  4.5e-66   1


>TAIR|locus:2065001 [details] [associations]
            symbol:EMB2799 "EMBRYO DEFECTIVE 2799" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] InterPro:IPR016040
            GO:GO:0009570 EMBL:CP002685 GO:GO:0000166 Gene3D:3.40.50.720
            EMBL:AY065091 EMBL:AY114557 IPI:IPI00537931 RefSeq:NP_181441.3
            UniGene:At.13251 ProteinModelPortal:Q8VZB1 SMR:Q8VZB1 PRIDE:Q8VZB1
            EnsemblPlants:AT2G39080.1 GeneID:818494 KEGG:ath:AT2G39080
            TAIR:At2g39080 InParanoid:Q8VZB1 OMA:INQIHYE PhylomeDB:Q8VZB1
            ProtClustDB:CLSN2691431 Genevestigator:Q8VZB1 Uniprot:Q8VZB1
        Length = 351

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 142/235 (60%), Positives = 167/235 (71%)

Query:     1 MGTISCTNTVSLNGAC--TRFFAADSLSSKAS-SVFFNNRTWKLKLR-PLVAXXXXXXMA 56
             MG ISC +  ++N     T  F+  S S+ +S S+ F  R  + K +           MA
Sbjct:     1 MGFISCISFPTINSRILSTHHFSKHSTSASSSYSLKFALRRQEDKPKVSFFLPLTSSLMA 60

Query:    57 TNFQVTASSSIGAVKEEQKGASSGGVGENDLLIVGPGVLGRLVAEQWRQEHPGCQIYGQT 116
             T  Q ++SS+IG   +  K  S   +G NDLLIVGPGVLGRLVAEQWRQEHP  QI+GQT
Sbjct:    61 TPIQASSSSTIGETSDGLKVQSHVSIGANDLLIVGPGVLGRLVAEQWRQEHPESQIFGQT 120

Query:   117 MTADHHDELINMGITPSLKWTEATQKFPYVIFCAPPSRSLDYPGDVRLAALSWNGEGSFL 176
             +T +HH EL N+GI PSLK TE   KF YVIFCAPPS+S DY G+VR AA +WNGEGSFL
Sbjct:   121 VTTNHHGELENLGIKPSLKGTEYGGKFSYVIFCAPPSQSADYAGEVRNAASNWNGEGSFL 180

Query:   177 FTSSSAIYDCSDNGACDEDSPVVPIGRSPRTDVLLKAEKVILEFGGCVLRLAGLY 231
             FTSSSA YDC DNG C+EDSPVVP+G+SPRTDVLLKAEKV+LE GG VLRLAGLY
Sbjct:   181 FTSSSAPYDCFDNGECNEDSPVVPLGKSPRTDVLLKAEKVVLECGGTVLRLAGLY 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      267       261   0.00090  114 3  11 22  0.46    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  219 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.92u 0.10s 21.02t   Elapsed:  00:00:01
  Total cpu time:  20.92u 0.10s 21.02t   Elapsed:  00:00:01
  Start:  Fri May 10 08:48:00 2013   End:  Fri May 10 08:48:01 2013

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