BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024474
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
R+ ++ GL SGKT+LF +L G ++ T TS+ + + + + +G +
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSI--TDSSAIYKVNNNRGN--SLT 57
Query: 120 LVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 117
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFSF 235
+LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F F
Sbjct: 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 177
Query: 236 SQCHNKVSVAEASGLTG 252
SQ KV E S G
Sbjct: 178 SQLPLKVEFLECSAKGG 194
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
+I++AG SGKT L L S TV S EP L + G V LVD PG
Sbjct: 14 SIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEP------LSAADYDGS--GVTLVDFPG 64
Query: 126 HSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVKKKIPVL 180
H +LR KL ++L A G++F+VD+ + +E+L DIL+ + + I +L
Sbjct: 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124
Query: 181 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS--------AVSEADVTNDFTLGI--PG 230
I CNK++ TA I+ +E EI K+ R ++E D + TL +
Sbjct: 125 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN-TLDVLQST 183
Query: 231 QAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265
F F+ V E S +ISQ ++I E++
Sbjct: 184 DGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
+I++AG SGKT L L S + TV S EP L + G V LVD PG
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEP------LSAADYDGS--GVTLVDFPG 100
Query: 126 HSRLRPKLDEFLPQAA----GIVFVVDALEFLPNCSAASEYLYDILT-NSTVVKKKIPVL 180
H +LR KL ++L A G++F+VD+ + +E+L DIL+ + + I +L
Sbjct: 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 160
Query: 181 ICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212
I CNK++ TA I+ +E EI K+ R
Sbjct: 161 IACNKSELFTARPPSKIKDALESEIQKVIERR 192
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 84
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 85 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILI 141
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 142 LGNKIDRTDAISEEKLRE 159
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 71
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 72 DLGGHIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 128
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 129 LGNKIDRPEAISEERLRE 146
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 65
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 66 DLGGGIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 122
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 123 LGNKIDRPEAISEERLRE 140
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
+++ K I++ GL G+GKT + Y+L G V + +P T + E+ K
Sbjct: 11 KLWGSNKELRILILGLDGAGKTTILYRL-----QIGEVVTTKP---TIGFNVETLSYKNL 62
Query: 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 176
+++ D+ G + +RP + A ++FVVD+ + S AS+ L+ +L + +
Sbjct: 63 KLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD-KDRMSTASKELHLMLQEEEL--QD 119
Query: 177 IPVLICCNKTDKVTAHTKEFIRKQM 201
+L+ NK D+ A + + K++
Sbjct: 120 AALLVFANKQDQPGALSASEVSKEL 144
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G VT++ T + E+ + K +
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYKNISFTVW 214
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L+
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLV 271
Query: 182 CCNKTD 187
NK D
Sbjct: 272 FANKQD 277
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + K +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L+
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLV 123
Query: 182 CCNKTD 187
NK D
Sbjct: 124 FANKQD 129
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + K +
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVW 65
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + G++FVVD+ + + A E L +L + + +L+
Sbjct: 66 DVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLV 122
Query: 182 CCNKTD 187
NK D
Sbjct: 123 FANKQD 128
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + K +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNICFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G R+RP + G++FVVD+
Sbjct: 67 DVGGQDRIRPLWKHYFQNTQGLIFVVDS 94
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P H S + I +
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TWHPTSEELAIGNIKFT 70
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ GIVF+VDA + P + D L N + K +P
Sbjct: 71 TFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD--PERFDEARVELDALFNIAEL-KDVPF 127
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
+I NK D A ++ +R +
Sbjct: 128 VILGNKIDAPNAVSEAELRSAL 149
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
+KK I++ GL +GKT + Y+++ G V + P T + E+ + + +
Sbjct: 14 QKKDVRILMVGLDAAGKTTILYKVK-----LGEVVTTIP---TIGFNVETVEFRNISFTV 65
Query: 121 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL 180
DV G ++RP + G++FVVD+ + A E L+ ++ + K +L
Sbjct: 66 WDVGGQDKIRPLWRHYYSNTDGLIFVVDSND-RERIDDAREELHRMINEEEL--KDAIIL 122
Query: 181 ICCNKTD 187
+ NK D
Sbjct: 123 VFANKQD 129
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
R K ++ GL SGKT + +L+ + + T E K
Sbjct: 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP------TIGFSIEKFKSSSLSFT 70
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
+ D+ G R R + + + I+FV+D+ + L A E L +L + + ++IP+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIPI 129
Query: 180 LICCNKTD 187
L NK D
Sbjct: 130 LFFANKMD 137
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ + L GL SGKT + G ++ + ++ N + TKG + + L
Sbjct: 29 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN------MRKITKGNV-TIKLW 81
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G R R + + + IV++VDA + A+ L+++L + + IPVL+
Sbjct: 82 DIGGQPRFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKNELHNLLDKPQL--QGIPVLV 138
Query: 182 CCNKTDKVTA-HTKEFIRK 199
NK D A KE I K
Sbjct: 139 LGNKRDLPGALDEKELIEK 157
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++ D
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVWD 63
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 64 VGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIF 120
Query: 183 CNKTD 187
NK D
Sbjct: 121 ANKQD 125
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++ D
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVWD 62
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIF 119
Query: 183 CNKTD 187
NK D
Sbjct: 120 ANKQD 124
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + K +
Sbjct: 18 KKEMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVW 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + G++FVVD+ + A + L+ +L + + +L+
Sbjct: 70 DVGGQDKIRPLWRHYFQNTQGLIFVVDSND-RDRVVEARDELHRMLNEDEL--RDAVLLV 126
Query: 182 CCNKTD 187
NK D
Sbjct: 127 FANKQD 132
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV--DVP 124
++ GL +GKT L + L++ + +++P H S + I + D+
Sbjct: 4 LLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TWHPTSEELAIGNIKFTTFDLG 53
Query: 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
GH + R ++ P+ GIVF+VDA + P + D L N + K +P +I N
Sbjct: 54 GHIQARRLWKDYFPEVNGIVFLVDAAD--PERFDEARVELDALFNIAEL-KDVPFVILGN 110
Query: 185 KTDKVTAHTKEFIRKQM 201
K D A ++ +R +
Sbjct: 111 KIDAPNAVSEAELRSAL 127
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL G+GKT + Y+L+ G V + P T + E+ + K +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNISFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G R+R + G++FVVD+ + A E + +L + + L+
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSND-RSRIGEAREVMQRMLNEDEL--RNAAWLV 123
Query: 182 CCNKTD 187
NK D
Sbjct: 124 FANKQD 129
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ + L GL SGKT + G ++ + ++ N + TKG + + L
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN------MRKITKGNV-TIKLW 72
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G R R + + + IV++VDA + A+ L+++L + + IPVL+
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKNELHNLLDKPQL--QGIPVLV 129
Query: 182 CCNKTDKVTA-HTKEFIRK 199
NK D A KE I K
Sbjct: 130 LGNKRDLPGALDEKELIEK 148
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL G+GKT + Y+L+ G V + P T + E+ + K +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNISFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G R+R + G++FV+D+
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDS 94
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G + VT++ T + E+ K ++ DV G
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANKQ 111
Query: 187 D 187
D
Sbjct: 112 D 112
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G + VT++ T + E+ K ++ DV G
Sbjct: 3 ILMLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANKQ 111
Query: 187 D 187
D
Sbjct: 112 D 112
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G + + P T + E+ + K + DV G
Sbjct: 3 ILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD+ + + A E L +L + + +L+ NK
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLVFANKQ 111
Query: 187 D 187
D
Sbjct: 112 D 112
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G VT++ T + E+ + K +
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGE----IVTTIP----TIGFNVETVEYKNICFTVW 78
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G ++RP + G++FVVD+
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDS 106
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L+ G V + P T + E+ + K + DV G
Sbjct: 3 ILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVETVQYKNISFTVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
R+R + G++FVVD+ + A E + +L + + L+ NK
Sbjct: 55 DRIRSLWRHYYRNTEGVIFVVDSND-RSRIGEAREVMQRMLNEDEL--RNAAWLVFANKQ 111
Query: 187 D 187
D
Sbjct: 112 D 112
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++ D
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVWD 63
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G ++RP + G++FVVD + A + L+ I+ + + + +LI
Sbjct: 64 VGGLDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIF 120
Query: 183 CNKTD 187
NK D
Sbjct: 121 ANKQD 125
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDV 123
S I++ GL +GKT + Y+L+ G + + P T + E+ + K + DV
Sbjct: 2 SMRILMVGLDAAGKTTILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVWDV 53
Query: 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183
G ++RP + G++FVVD+ + + A E L +L + + +L+
Sbjct: 54 GGLDKIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDEL--RDAVLLVFA 110
Query: 184 NKTD 187
NK D
Sbjct: 111 NKQD 114
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVW 371
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + G++FVVD + A + L+ I+ N ++ I +LI
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRII-NDREMRDAI-ILI 428
Query: 182 CCNKTDKVTAHTKEFIRKQM 201
NK D A I++++
Sbjct: 429 FANKQDLPDAMKPHEIQEKL 448
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK I++ GL +GKT + Y+L+ G + + P T + E+ + K +
Sbjct: 15 KKEMRILMVGLDAAGKTSILYKLK-----LGEIVTTIP---TIGFNVETVEYKNISFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DV G ++RP + I+FVVD+ + A E L +L + + +L+
Sbjct: 67 DVGGQDKIRPLWRHYYQNTQAIIFVVDSND-RDRIGEAREELMKMLNEDEM--RNAILLV 123
Query: 182 CCNKTD 187
NK D
Sbjct: 124 FANKHD 129
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++ DV G
Sbjct: 5 ILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVWDVGGL 56
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANKQ 113
Query: 187 D 187
D
Sbjct: 114 D 114
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL +GKT + Y+L+ G +VT++ T + E+ K ++ DV G
Sbjct: 6 ILMLGLDAAGKTTILYKLKLGQ----SVTTIP----TVGFNVETVTYKNVKFNVWDVGGL 57
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD + A + L+ I+ + + + +LI NK
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDREM--RDAIILIFANKQ 114
Query: 187 D 187
D
Sbjct: 115 D 115
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-MEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
+V+ GL SGKT + Q++ + +T+ + N +TF KG++ + D+ G
Sbjct: 20 VVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF------EKGRV-AFTVFDMGG 72
Query: 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK-----KIPVL 180
+ R + + ++FVVD+ + L C SE + +L + + ++ ++P L
Sbjct: 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSE-IQAMLKHEDIRRELPGGGRVPFL 131
Query: 181 ICCNKTDKVTAHT 193
NK D A T
Sbjct: 132 FFANKMDAAGAKT 144
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+ GL +GKT + Y+L+ G + VT++ T + E+ K ++ DV G
Sbjct: 3 ILXLGLDAAGKTTILYKLKLGQS----VTTIP----TVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
++RP + G++FVVD + A + L+ I+ + + +LI NK
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCAD-RDRIDEARQELHRIINDRE--XRDAIILIFANKQ 111
Query: 187 D 187
D
Sbjct: 112 D 112
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK------IKPVHL 120
+++ GL +GKT + YQ NE V+H+ T G +K H
Sbjct: 19 VIIVGLDNAGKTTILYQFL-------------MNE---VVHTSPTIGSNVEEIVVKNTHF 62
Query: 121 V--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
+ D+ G LR + + I+ VVD+++ + E LY +L + + +K
Sbjct: 63 LMWDIGGQESLRSSWNTYYSNTEFIILVVDSID-RERLAITKEELYRMLAHEDL--RKAA 119
Query: 179 VLICCNKTDKVTAHTKEFIRKQM 201
VLI NK D T I K +
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYL 142
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K I++ GL G+GKT + Y+L+ G V + P T + E + +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLK-----LGEVITTIP---TIGFNVECVQYCNISFTVW 66
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA 149
DV G R+R + G++FVVD+
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDS 94
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ + L GL SGKT + G + + ++ N + TKG + + +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFN------MRKVTKGNV-TIKIW 72
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G R R + + IV+++DA + A+ L+++L + + IPVL+
Sbjct: 73 DIGGQPRFRSMWERYCRGVNAIVYMIDAAD-REKIEASRNELHNLLDKPQL--QGIPVLV 129
Query: 182 CCNKTDKVTA-HTKEFIRK 199
NK D A K+ I K
Sbjct: 130 LGNKRDLPNALDEKQLIEK 148
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L G V + P T + E+ K + D+ G
Sbjct: 5 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGQ 56
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
+ +RP + +++VVD+
Sbjct: 57 TSIRPYWRCYYSNTDAVIYVVDS 79
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L G V + P T + E+ K + D+ G
Sbjct: 7 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGL 58
Query: 127 SRLRPKLDEFLPQAAGIVFVVDA 149
+ +RP + +++VVD+
Sbjct: 59 TSIRPYWRCYYSNTDAVIYVVDS 81
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I++ GL G+GKT + Y+L G V + P T + E+ K + D+ G
Sbjct: 10 ILILGLDGAGKTTILYRL-----QVGEVVTTIP---TIGFNVETVTYKNLKFQVWDLGGL 61
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALE 151
+ +RP + +++VVD+ +
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCD 86
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 24/133 (18%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
+S +VL G G GKT L DG+ + S P + + KGK +H+ D
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE----SYTPTVFERYMVNLQVKGKPVHLHIWD 88
Query: 123 VPG---HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK----- 174
G + RLRP F P A+ ++ D PN +D + N +
Sbjct: 89 TAGQDDYDRLRPL---FYPDASVLLLCFDVTS--PNS-------FDNIFNRWYPEVNHFC 136
Query: 175 KKIPVLICCNKTD 187
KK+P+++ KTD
Sbjct: 137 KKVPIIVVGCKTD 149
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234
T+ + +R ++++ +D+L +RS E DV D+ GIP +A S
Sbjct: 115 TSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAIS 159
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234
T+ + +R ++++ +D+L +RS E DV D+ GIP +A S
Sbjct: 115 TSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAIS 159
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ GL +GKT + YQ T ++ N + V+++ + D+ G
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINN-------TRFLMWDIGGQ 70
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
LR + + ++ VVD+ + S E LY +L + + +K +LI NK
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAGLLIFANKQ 127
Query: 187 D 187
D
Sbjct: 128 D 128
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ GL +GKT + YQ T ++ N + V+++ + D+ G
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINN-------TRFLMWDIGGQ 70
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
LR + + ++ VVD+ + S E LY +L + + +K +LI NK
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAGLLIFANKQ 127
Query: 187 D 187
D
Sbjct: 128 D 128
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 17/173 (9%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSESTKGKIK 116
RR+ + I L G G GKT ++ DG + TV ++ + TF+ +G +
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN-HPVTFL----DDQGNVI 61
Query: 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 176
++ D G + D + A+G + D + C + ++ + VV +
Sbjct: 62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEF---QAVVGNE 117
Query: 177 IPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 229
P+++C NK D ++ I K++ E+ L+ E G+P
Sbjct: 118 APIVVCANKID---IKNRQKISKKLVMEV--LKGKNYEYFEISAKTAHNFGLP 165
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
R + +++ GL +GKT + YQ T ++ N + V+++
Sbjct: 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINN-------TRFL 68
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
+ D+ G LR + + ++ VVD+ + S E LY +L + + +K +
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAGL 125
Query: 180 LICCNKTD 187
LI NK D
Sbjct: 126 LIFANKQD 133
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ GL +GKT + YQ T ++ N + V+++ + D+ G
Sbjct: 25 VIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINN-------TRFLMWDIGGQ 76
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
LR + + ++ VVD+ + S E LY +L + + +K +LI NK
Sbjct: 77 ESLRSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDL--RKAGLLIFANKQ 133
Query: 187 D 187
D
Sbjct: 134 D 134
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + + V ++ V H + +G IK ++ D G
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFH--TNRGPIK-FNVWDTAGQ 74
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 127
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 128 KVDIKDRKVKAKSIVFHRKK 147
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQMEKEID 206
K D KV A + F RK+ + D
Sbjct: 123 KVDIKDRKVKAKSIVFHRKKNLQYYD 148
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ GL +GKT + Y+L G T + E+ + K + D+ G
Sbjct: 25 VLMLGLDNAGKTSILYRLHLGDVVTTVPTVGV--------NLETLQYKNISFEVWDLGGQ 76
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186
+ +RP + +++VVD+ + A LY +L + +K +LI NK
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDR-DRMGVAKHELYALLDEDEL--RKSLLLIFANKQ 133
Query: 187 DKVTAHTKEFIRKQM 201
D A ++ I +Q+
Sbjct: 134 DLPDAASEAEIAEQL 148
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 34/168 (20%)
Query: 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124
TI+ AG S GK+ L Y+L +G P ++ E KI +D P
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK----RPGVTRKIIEIEWKNHKI-----IDXP 52
Query: 125 G-----------HSRLRPKLDEFLPQAAG----IVFVVD---ALEFLPNCSAASEYLYDI 166
G R++ ++ F+ A V VVD A E + E D+
Sbjct: 53 GFGFXXGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV 112
Query: 167 LTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK------EIDKL 208
+ + IP ++ NK DK+ + +E I EK EIDK+
Sbjct: 113 EFYQFLRELDIPTIVAVNKLDKIK-NVQEVINFLAEKFEVPLSEIDKV 159
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQMEKEID 206
K D KV A + F RK+ + D
Sbjct: 123 KVDIKDRKVKAKSIVFHRKKNLQYYD 148
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + L D G
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQLWDTAGQ 62
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALE 151
R R + A GI+ V D +
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTD 87
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG 125
++L G SG GKT L + +DG+ GT ++++ + VL + K K++ + D G
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ---MWDTAG 69
Query: 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTN-STVVKKKIPVLICCN 184
R R + A ++ + D A+ + + LT + + +++ N
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDV-----TNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 185 KTDKVTAHTKEFIRKQMEK 203
K D +AH + R+ EK
Sbjct: 125 KVD--SAHERVVKREDGEK 141
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 58 VFRRKKST-----TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK 112
+ R+ KS I+L GL +GKT L QL ++ + P + F + S ++
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQ 59
Query: 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNS 170
G +++ D+ G ++RP + +++V+D+ + L + S
Sbjct: 60 GF--KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS 117
Query: 171 TVVKKKIPVLICCNKTDKVTA 191
V PVLI NK D +TA
Sbjct: 118 CV-----PVLIFANKQDLLTA 133
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 62
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 115
Query: 185 KTD----KVTAHTKEFIRKQMEKEID 206
K D KV A + F RK+ + D
Sbjct: 116 KVDIKDRKVKAKSIVFHRKKNLQYYD 141
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 58 VFRRKKST-----TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK 112
+ R+ KS I+L GL +GKT L QL ++ + P + F + S ++
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQ 58
Query: 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNS 170
G +++ D+ G ++RP + +++V+D+ + L + S
Sbjct: 59 GF--KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS 116
Query: 171 TVVKKKIPVLICCNKTDKVTA 191
V PVLI NK D +TA
Sbjct: 117 CV-----PVLIFANKQDLLTA 132
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 74
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 127
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 128 KVDIKDRKVKAKSIVFHRKK 147
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + L D G
Sbjct: 10 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQLWDTAGQ 66
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALE 151
R R + A GI+ V D +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTD 91
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 15 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGL 71
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 124
Query: 185 KTD----KVTAHTKEFIRKQMEKEID 206
K D KV A + F RK+ + D
Sbjct: 125 KVDIKDRKVKAKSIVFHRKKNLQYYD 150
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L GL +GKT L QL ++ + P + F + S ++G +++ D+ G
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQGF--KLNVWDIGGQ 58
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
++RP + +++V+D+ + L + S V PVLI N
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV-----PVLIFAN 113
Query: 185 KTDKVTA 191
K D +TA
Sbjct: 114 KQDLLTA 120
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 71 GLSGSGKTVLFYQLRDGSTHQGTVTS--MEPNEDTFVLHSESTKGKI---KPVH--LVDV 123
G SG GKT + YQ DG + +T+ ++ E V + G + + +H L D
Sbjct: 18 GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 124 PGHSRLRPKLDEFLPQAAGIVFVVD 148
G R R F A G + + D
Sbjct: 78 AGLERFRSLTTAFFRDAMGFLLLFD 102
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 9 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGL 65
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 118
Query: 185 KTD----KVTAHTKEFIRKQMEKEID 206
K D KV A + F RK+ + D
Sbjct: 119 KVDIKDRKVKAKSIVFHRKKNLQYYD 144
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + L D G
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQLWDTAGQ 79
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALE 151
R R + A GI+ V D +
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTD 104
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGQ 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + + D G
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQIWDTAGQ 62
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R R + A GI+ V D
Sbjct: 63 ERFRTITTAYYRGAXGIILVYD 84
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L G SG GK+ L + + + +T++ + F + + GK + + D G
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID---FKIKTVDINGKKVKLQIWDTAGQ 62
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R R + A GI+ V D
Sbjct: 63 ERFRTITTAYYRGAMGIILVYD 84
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+VL G G+GKT + G + V ++ V H+ +G IK ++ D G
Sbjct: 13 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRGPIK-FNVWDTAGL 69
Query: 127 SRLRPKLDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
+ D + QA A I+F V + N L + N IP+++C N
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGN 122
Query: 185 KTD----KVTAHTKEFIRKQ 200
K D KV A + F RK+
Sbjct: 123 KVDIKDRKVKAKSIVFHRKK 142
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/192 (17%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
++++ +++ GL +GKT + + + + ++ P T + ++ + + ++
Sbjct: 12 QKERELRLLMLGLDNAGKTTILKKF-----NGEDIDTISP---TLGFNIKTLEHRGFKLN 63
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKI 177
+ DV G LR + G+++VVD+ + + +C + S +V++++
Sbjct: 64 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ--------SLLVEERL 115
Query: 178 P---VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234
+LI NK D A + IR+ + E+D +R+ + L +PG +
Sbjct: 116 AGATLLIFANKQDLPGALSSNAIREVL--ELDSIRSHHWCIQGCSAVTGENL-LPGIDWL 172
Query: 235 FSQCHNKVSVAE 246
+++ A+
Sbjct: 173 LDDISSRIFTAD 184
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 27/139 (19%)
Query: 66 TIVLAGLSGSGKTVLFYQL--------RDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKP 117
T+ L G +GSGKT L L R G +GT T+ E LH + + + P
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAK--LHRTTVRTGVAP 68
Query: 118 -------VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNS 170
V L+D PG+ +F+ + G + DA L SA +
Sbjct: 69 LLFRGHRVFLLDAPGYG-------DFVGEIRGALEAADAA--LVAVSAEAGVQVGTERAW 119
Query: 171 TVVKK-KIPVLICCNKTDK 188
TV ++ +P ++ K DK
Sbjct: 120 TVAERLGLPRMVVVTKLDK 138
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
I+L GL +GKT L QL ++ + P + F + S ++G +++ D+ G
Sbjct: 7 ILLLGLDNAGKTTLLKQLASED-----ISHITPTQG-FNIKSVQSQGF--KLNVWDIGGL 58
Query: 127 SRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184
++RP + +++V+D+ + L + S V PVLI N
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV-----PVLIFAN 113
Query: 185 KTDKVTA 191
K D +TA
Sbjct: 114 KQDLLTA 120
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 19/158 (12%)
Query: 61 RKKSTTIVLAGLSGSGKTV----LFYQLRDGSTHQGTVTSMEPNE------DTFVLHSES 110
R+ + IV G SGKT ++ ++ +G +G + S+ + D L
Sbjct: 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEG--RKGEMVSLATEDERTLFFDFLPLDIGE 68
Query: 111 TKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPN-CSAASEYLYDI--- 166
KG HL VPG L GIVFV D+ PN A +E + ++
Sbjct: 69 VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS---APNRLRANAESMRNMREN 125
Query: 167 LTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
L + +P++I NK D A E +R ++ E
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE 163
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 88/198 (44%), Gaps = 36/198 (18%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
++++ +++ GL +GKT + + + V ++ P T + ++ + + ++
Sbjct: 14 QKERELRLLMLGLDNAGKTTILKKF-----NGEDVDTISP---TLGFNIKTLEHRGFKLN 65
Query: 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKI 177
+ DV G LR + G+++VVD+ + + +C + S +V++++
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ--------SLLVEERL 117
Query: 178 P---VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR------SAVSEADVTNDFTLGI 228
+LI NK D A + I++ + E+D +R+ SAV+ D+ +
Sbjct: 118 AGATLLIFANKQDLPGALSXNAIQEAL--ELDSIRSHHWRIQGCSAVTGEDL-------L 168
Query: 229 PGQAFSFSQCHNKVSVAE 246
PG + ++V A+
Sbjct: 169 PGIDWLLDDISSRVFTAD 186
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 62 KKSTTIVLAGLSGSGKT-----VLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSEST 111
K+ IV+A +GKT +L+Y R G H+G T ME + + + +
Sbjct: 10 KRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV 69
Query: 112 KG---KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 168
K ++++D PGH +++ + G + V D+ + SE ++
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW---- 122
Query: 169 NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203
K K+P + NK DK A IR E+
Sbjct: 123 -RQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 103 TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNCS 157
+ L +++ G+ ++ +D PGH ++ L G + VVDA + L NC
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 158 AASE 161
A E
Sbjct: 118 TAME 121
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 103 TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA-----LEFLPNCS 157
+ L +++ G+ ++ +D PGH ++ L G + VVDA + L NC
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 158 AASE 161
A E
Sbjct: 118 TAME 121
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 24 LNRGIEFINQIPPTQLYIACA---VXXXXXXXXXXXQVFRRKKSTTIVLAGLSGSGKTVL 80
L + + ++ Q P +Q+ A V R++ + L GLSG
Sbjct: 79 LRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP 138
Query: 81 FYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140
L G + + SM + F+ E PV ++D P + L+ +
Sbjct: 139 L-NLSGGQKQRLAIASMLARDTRFLALDE-------PVSMLDPPSQREIFQVLESLKNEG 190
Query: 141 AGIVFVVDALEFLPN 155
GI+ V LE+L +
Sbjct: 191 KGIILVTHELEYLDD 205
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126
+++ G G GKT L + D + + +++ + F + + +GK + + D G
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVD---FKIKTVELRGKKIRLQIWDTAGQ 85
Query: 127 SRLRPKLDEFLPQAAGIVFVVD 148
R + A GI+ V D
Sbjct: 86 ERFNSITSAYYRSAKGIILVYD 107
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 99 PNEDTFVLHSESTKG--------KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL 150
P++ +L TKG K P +VDV G R + E I+F+V +
Sbjct: 152 PSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 211
Query: 151 EF--------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187
EF N S +++ + N+ V + +++ NKTD
Sbjct: 212 EFDQVLMEDRQTNRLTESLNIFETIVNNRVF-SNVSIILFLNKTD 255
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 99 PNEDTFVLHSESTKG--------KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL 150
P++ +L TKG K P +VDV G R + E I+F+V +
Sbjct: 176 PSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 235
Query: 151 EF--------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187
EF N S +++ + N+ V + +++ NKTD
Sbjct: 236 EFDQVLMEDRQTNRLTESLNIFETIVNNRVF-SNVSIILFLNKTD 279
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 35/124 (28%)
Query: 80 LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139
+FY+ +DG+T++ +HL+D PGH ++ L
Sbjct: 63 MFYKAKDGNTYK--------------------------LHLIDTPGHVDFSYEVSRALAA 96
Query: 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 199
G + ++DA + + + A+ + V++ + ++ NK D +A + ++K
Sbjct: 97 CEGALLLIDASQGIEAQTVANFW--------KAVEQDLVIIPVINKIDLPSADV-DRVKK 147
Query: 200 QMEK 203
Q+E+
Sbjct: 148 QIEE 151
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 9/153 (5%)
Query: 61 RKKSTTIVLAGLSGSGKTV----LFYQLRDGSTHQGTVTSMEPNEDTFV----LHSESTK 112
R+ + IV G SGKT ++ ++ +G + + E F L K
Sbjct: 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVK 70
Query: 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNST 171
G HL VPG L GIVFV D+ +A S + L
Sbjct: 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYG 130
Query: 172 VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204
+ +P++I NK D A E +R ++ E
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEXVRAVVDPE 163
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 35/123 (28%)
Query: 81 FYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140
FY+ +DG+T++ +HL+D PGH ++ L
Sbjct: 64 FYKAKDGNTYK--------------------------LHLIDTPGHVDFSYEVSRALAAC 97
Query: 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 200
G + ++DA + + + A+ + V++ + ++ NK D +A + ++KQ
Sbjct: 98 EGALLLIDASQGIEAQTVANFW--------KAVEQDLVIIPVINKIDLPSADV-DRVKKQ 148
Query: 201 MEK 203
+E+
Sbjct: 149 IEE 151
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVLHS 108
Q+ R +++ +I+++G SG+GKTV Y +R +T G+ + E N + VL S
Sbjct: 149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS--EANVEEKVLAS 199
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGTVTS--MEPNEDTFVLHSESTKG---KIKPVHLV 121
AG + + + +L+Y R G H+G T ME + + + + K ++++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINII 82
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH +++ + G + V D+ + SE ++ K K+P +
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQ---GVEPQSETVW-----RQAEKYKVPRIA 134
Query: 182 CCNKTDKVTAHTKEFIRKQMEK 203
NK DK A IR E+
Sbjct: 135 FANKMDKTGADLWLVIRTMQER 156
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 99 PNEDTFVLHSESTKG--------KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL 150
P++ +L TKG K P +VDV G R + E I+F+V +
Sbjct: 152 PSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSS 211
Query: 151 EF--------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187
EF N S +++ + N+ V + +++ NKTD
Sbjct: 212 EFDQVLMEDRQTNRLTESLNIFETIVNNRVF-SNVSIILFLNKTD 255
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 59 FRRKKSTTIVLAGLSGSGKT-----VLFYQLRD---GSTHQGT--VTSMEPNEDTFVLHS 108
F +K+ I + +GKT +L+Y R G TH+G + ME +D + +
Sbjct: 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT 64
Query: 109 ESTKGKI---KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYD 165
+ V+++D PGH L +++ L G V V+DA +E ++
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQS---GVEPQTETVWR 121
Query: 166 ILTNSTVVKKKIPVLICCNKTDKVTAH 192
T V P ++ NK DK+ A+
Sbjct: 122 QATTYGV-----PRIVFVNKMDKLGAN 143
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 70 AGLSGSGKTVLFYQLRD---GSTHQGT--VTSMEPNEDTFVLHSESTKGKI---KPVHLV 121
AG + + + +L+Y R G TH+G + ME +D + + + V+++
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D PGH L +++ L G V V+DA +E ++ T V P ++
Sbjct: 81 DTPGHVDLTVEVERSLRVLDGAVTVLDAQS---GVEPQTETVWRQATTYGV-----PRIV 132
Query: 182 CCNKTDKVTAH 192
NK DK+ A+
Sbjct: 133 FVNKMDKLGAN 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,193,025
Number of Sequences: 62578
Number of extensions: 263452
Number of successful extensions: 1173
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 113
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)