BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024474
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta OS=Dictyostelium
discoideum GN=srprb PE=3 SV=1
Length = 290
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 15/210 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ I + GLS +GKT L L + T TS+ N ++ ++ K + ++
Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENK------KKLPII 136
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
DVPG+ + + L + L +A I++V+D F+ N + ++YLYDILTN +V +KKIPVL+
Sbjct: 137 DVPGNGKAKASLPKILSNSACIIYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLV 196
Query: 182 CCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA----VSEADVTNDFTLGIPGQAFSFSQ 237
NK D + E ++ +E+E+D LR +R A + + + D LGI G F F
Sbjct: 197 FNNKMDLDSTIDTEQVKNILERELDDLRRTRGATPIVLGQEEDKKDIYLGIEGTPFQFDH 256
Query: 238 CHNKV-----SVAEASGLTGEISQVEQFIR 262
N V S + ++G EI ++ FI+
Sbjct: 257 LPNDVQFSNGSASPSNGELKEIDDIKNFIQ 286
>sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus
GN=Srprb PE=1 SV=1
Length = 269
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 107/201 (53%), Gaps = 10/201 (4%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ + + +++ +
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNN----RGN 109
Query: 117 PVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 175
+ L+D+PGH LR +L D F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 SLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN 169
Query: 176 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQA 232
+LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 170 SPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKE 229
Query: 233 FSFSQCHNKVSVAEASGLTGE 253
F FSQ KV E S G
Sbjct: 230 FEFSQLPLKVEFLECSAKGGR 250
>sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens
GN=SRPRB PE=1 SV=3
Length = 271
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 9/198 (4%)
Query: 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVH 119
RR ++L GL SGKT+LF +L G ++ T TS+ + V + +G +
Sbjct: 60 RRSSQRAVLLVGLCDSGKTLLFVRLLTG-LYRDTQTSI--TDSCAVYRVNNNRGN--SLT 114
Query: 120 LVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
L+D+PGH LR + L+ F A IVFVVD+ F +E+LY +L +S +K
Sbjct: 115 LIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPS 174
Query: 179 VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQAFSF 235
LI CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+ F F
Sbjct: 175 FLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 234
Query: 236 SQCHNKVSVAEASGLTGE 253
SQ KV E S G
Sbjct: 235 SQLPLKVEFLECSAKGGR 252
>sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus
norvegicus GN=Srprb PE=2 SV=1
Length = 269
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 10/201 (4%)
Query: 58 VFRRKKSTTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
++ RK S VL GL SGKT+LF +L G ++ T TS+ + + +++ +
Sbjct: 55 IWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSSAIYKVNNN----RGN 109
Query: 117 PVHLVDVPGHSRLRPK-LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKK 175
+ L+D+PGH LR + LD F A +VFVVD+ F +E+LY +L +S +K
Sbjct: 110 SLTLIDLPGHESLRLQFLDRFKSSARAVVFVVDSATFQREVKDVAEFLYQVLIDSMALKN 169
Query: 176 KIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS---EADVTNDFTLGIPGQA 232
L+ CNK D A + + I++Q+EKE++ LR +RSA ++ T LG G+
Sbjct: 170 TPAFLVACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKE 229
Query: 233 FSFSQCHNKVSVAEASGLTGE 253
F FSQ KV E S G
Sbjct: 230 FEFSQLPLKVEFLECSAKGGR 250
>sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1
SV=1
Length = 244
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 32/249 (12%)
Query: 39 LYIACAVLLLTTALLLLLQ-------VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91
L IAC +++ TT L+ +Q + ++ +I++AG SGKT L L S
Sbjct: 6 LIIACLLVIGTTIALIAVQKASSKTGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 65
Query: 92 GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA----GIVFVV 147
TV S EP L + G V LVD PGH +LR KL ++L A G++F+V
Sbjct: 66 -TVVSQEP------LSAADYDGS--GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV 116
Query: 148 DALEFLPNCSAASEYLYDILT-NSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206
D+ + +E+L DIL+ + + I +LI CNK++ TA I+ +E EI
Sbjct: 117 DSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 176
Query: 207 KLRASRS--------AVSEADVTNDFTLGI--PGQAFSFSQCHNKVSVAEASGLTGEISQ 256
K+ R ++E D + TL + F F+ V E S +ISQ
Sbjct: 177 KVIERRKKSLNEVERKINEEDYAEN-TLDVLQSTDGFKFANLEASVVAFEGSINKRKISQ 235
Query: 257 VEQFIREQV 265
++I E++
Sbjct: 236 WREWIDEKL 244
>sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1
Length = 198
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
>sp|Q3T0D7|SAR1A_BOVIN GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1
Length = 198
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + P + L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADH-PRLMESKVELNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
>sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1
Length = 198
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1
Length = 198
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
>sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1
Length = 198
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
>sp|Q3T0T7|SAR1B_BOVIN GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1
Length = 198
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ TV +P+LI
Sbjct: 75 DLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETVA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|Q5PYH3|SAR1B_PIG GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1
Length = 198
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ TV +P+LI
Sbjct: 75 DLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETVA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1
Length = 198
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHVQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|Q5HZY2|SAR1B_RAT GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1
Length = 198
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHLQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|Q9QVY3|SAR1B_CRIGR GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1
Length = 198
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK+ +V GL +GKT L + L+D Q V ++ P + + +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADH-ERLLESKEELDSLMTDETIA--NVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRPEAISEERLRE 149
>sp|P36536|SAR1A_MOUSE GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1
Length = 198
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KKS +V GL +GKT L L+D Q V ++ P + + +
Sbjct: 23 KKSGKLVFLGLDNAGKTTLLQMLKDDRLGQ-HVPTLHPTSEELTIAGMT-------FTTF 74
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R +LP GIVF+VD + + E L ++T+ T+ +P+LI
Sbjct: 75 DLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVE-LNALMTDETI--SNVPILI 131
Query: 182 CCNKTDKVTAHTKEFIRK 199
NK D+ A ++E +R+
Sbjct: 132 LGNKIDRTDAISEEKLRE 149
>sp|A5DR82|SAR1_PICGU Small COPII coat GTPase SAR1 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 /
NRRL Y-324) GN=SAR1 PE=3 SV=3
Length = 190
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQPT-----LHPTSEELAIGSVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E L A E L+ I S ++
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELS-----QV 122
Query: 178 PVLICCNKTDKVTA 191
P LI NK DK TA
Sbjct: 123 PFLILGNKIDKSTA 136
>sp|Q8SQH8|ARF_ENCCU ADP-ribosylation factor OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ARF-1 PE=1 SV=3
Length = 207
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK 114
L +F + +I + GL G+GKT L L+ G HQ TV ++ N + L G
Sbjct: 16 LRGLFSGQSERSITMIGLDGAGKTTLLLYLQTGEVHQ-TVPTLGFNCENVTL------GS 68
Query: 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 174
+K + D+ G + +++ + GI+++VD + + E L+ IL ++
Sbjct: 69 MK-FQVWDIGGQNSFMRFWHQYINEGCGIIYMVDCAD-PQRFGKSGEELWRIL---NILN 123
Query: 175 KKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206
P+L+ NK D + H + + K + E +
Sbjct: 124 SPRPLLVLANKIDLIREHERSEVVKSIRNEFN 155
>sp|O13950|SRPB_SCHPO Signal recognition particle receptor subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp102 PE=3 SV=1
Length = 227
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL 120
+KK + L G S SGKT LF +L + TV S+EPNE + + L
Sbjct: 34 QKKLPAVFLIGPSDSGKTSLFCELI-YKEKKTTVPSIEPNEAVWKYGA----------WL 82
Query: 121 VDVPGHSRLRPKLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI 177
VD+PGH R + + +VFV+++ + L+D + K +
Sbjct: 83 VDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCR--KHHV 140
Query: 178 P-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223
P +LI CNK D TA E I++ ++ E+ + ++ E+ V+ D
Sbjct: 141 PHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESIVSED 187
>sp|Q54V47|ARFJ_DICDI ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3
SV=1
Length = 188
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK 114
+ +F KK T I++ GL G+GK+ L Y+L+ G V S P T + E+ + K
Sbjct: 16 IFSLFEGKKETRILMIGLDGAGKSTLLYKLK-----LGDVVSTIP---TIGFNVETIEYK 67
Query: 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 174
+ + DV G ++RP + + ++FVVD+ + E + ++L +
Sbjct: 68 NLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTD-RERMDEVKEEIDNLLIQDEL-- 124
Query: 175 KKIPVLICCNKTDKVTA-HTKEFIR 198
K +L+ NK D A +T E +
Sbjct: 125 KGTQILVFANKQDMNNAMNTAEIVN 149
>sp|Q5EMZ6|SAR1_MAGO7 Small COPII coat GTPase SAR1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SAR1 PE=2 SV=1
Length = 189
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ V ++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----VAILQPT-----LHPTSEELAIGNVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA + P A + L S K+
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALL-----SMEELAKV 122
Query: 178 PVLICCNKTDKVTAHTKEFIRKQM 201
P +I NK D A ++E +R Q+
Sbjct: 123 PFVILGNKIDHPEAISEEELRHQL 146
>sp|Q3SXC5|ARL14_MOUSE ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14
PE=2 SV=1
Length = 192
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I+L GL +GK+ L Y+L+ T T+ ++ N + L S T + + D
Sbjct: 12 KQAHILLLGLDSAGKSTLLYRLKFAET-LATIPTIGFNVEMVQLQSSLT------LTVWD 64
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G ++R D + A G+++VVD E + + IL N + K PV+I
Sbjct: 65 VGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHI--KNTPVVIL 122
Query: 183 CNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213
NK D A + E I + ++ KL ++R+
Sbjct: 123 ANKQDLPGALSAEDITRMF--KVKKLCSNRN 151
>sp|Q54R04|ARL8_DICDI ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum
GN=arl8 PE=3 SV=1
Length = 185
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K+ + L GL GSGKT L + +G + T+ ++ N + TKG + + L
Sbjct: 17 KQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFN------MKKVTKGNV-TIKLW 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G R R + + IVFVVD+ + + + L D++ + KIP+L+
Sbjct: 70 DIGGQPRFRSMWERYCRGVNAIVFVVDSAD-REKFEQSKQALQDLINKPPLA--KIPLLV 126
Query: 182 CCNKTD 187
NK D
Sbjct: 127 VANKND 132
>sp|P0C950|SAR1_ASPNG Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1
Length = 189
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ GH + R ++ P+ +GIVF+VDA + C S+ D L + K+P LI
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDH--ECFPESKAELDALLAMEEL-AKVPFLI 126
Query: 182 CCNKTDKVTAHTKEFIRKQM 201
NK D A +++ +R Q+
Sbjct: 127 LGNKIDHPDAVSEDDVRHQL 146
>sp|Q5BGB9|SAR1_EMENI Small COPII coat GTPase sar1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sar1
PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + S K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELS-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
L+ NK D A +++ +R Q+
Sbjct: 125 LVLGNKIDHPDAVSEDELRHQL 146
>sp|P0CR30|SAR1_CRYNJ Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SAR1 PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KS ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKSAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQPT-----LHPTSEELAIGNVKFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ GIVF+VD+ + + +E L +L+ ++ ++P
Sbjct: 68 TYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAE-LDSLLSIESLA--QVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A ++E +R ++
Sbjct: 125 LILGNKIDAYGAVSEEQLRHEL 146
>sp|P0CR31|SAR1_CRYNB Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SAR1 PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KS ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKSAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQPT-----LHPTSEELAIGNVKFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ GIVF+VD+ + + +E L +L+ ++ ++P
Sbjct: 68 TYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAE-LDSLLSIESLA--QVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A ++E +R ++
Sbjct: 125 LILGNKIDAYGAVSEEQLRHEL 146
>sp|A1CRG9|SAR1_ASPCL Small COPII coat GTPase sar1 OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=sar1 PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + S K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELS-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|Q0CUN7|SAR1_ASPTN Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=sar1 PE=3 SV=1
Length = 189
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA ++ P A + L + + K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELA-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|Q2HA55|SAR1_CHAGB Small COPII coat GTPase SAR1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=SAR1 PE=3 SV=2
Length = 190
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ V ++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----VAILQP-----TLHPTSEELSIGNVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ G+VF+VDA E P A + L + S K+
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELS-----KV 122
Query: 178 PVLICCNKTDKVTAHTKEFIRKQM 201
P ++ NK D A +++ +R Q+
Sbjct: 123 PFVVLGNKIDHPDAVSEDELRHQL 146
>sp|Q4P0I7|SAR1_USTMA Small COPII coat GTPase SAR1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SAR1 PE=3 SV=1
Length = 189
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 54 LLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG 113
+L Q+ K+ I+ GL +GKT L + L++ + +++P LH S +
Sbjct: 10 ILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDR-----LATLQPT-----LHPTSEEL 59
Query: 114 KIKPVHLV--DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNST 171
I V D+ GH + R ++ P+ GIVF+VD + A +E L +L+
Sbjct: 60 AIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAE-LDALLSIEE 118
Query: 172 VVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201
+ +P LI NK D A ++E +R+ +
Sbjct: 119 L--SSVPFLILGNKIDAPGAVSEEELRQAI 146
>sp|A1D4D1|SAR1_NEOFI Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3
SV=1
Length = 189
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + + K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|Q4WJS7|SAR1_ASPFU Small COPII coat GTPase sar1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sar1 PE=3
SV=1
Length = 189
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + + K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|P40994|ARF3_YEAST ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ARF3 PE=1 SV=2
Length = 183
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I++ GL +GKT + Y+L+ + ++ + T + E+ K ++ D
Sbjct: 16 KEMKILMLGLDKAGKTTILYKLK--------LNKIKTSTPTVGFNVETVTYKNVKFNMWD 67
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G RLRP + P ++FV+D+ A E LY I+ + + + +L+
Sbjct: 68 VGGQQRLRPLWRHYFPATTALIFVIDS-SARNRMEEAKEELYSIIGEKEM--ENVVLLVW 124
Query: 183 CNKTD 187
NK D
Sbjct: 125 ANKQD 129
>sp|P78976|SAR1_HYPJE Small COPII coat GTPase sar1 OS=Hypocrea jecorina GN=sar1 PE=3 SV=1
Length = 189
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHL- 120
K ++ GL +GKT L + L++ V ++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----VAILQP-----TLHPTSEELAIGNVRFN 67
Query: 121 -VDVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P G+VF+VDA E P A + L + S K+
Sbjct: 68 TFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELS-----KV 122
Query: 178 PVLICCNKTDKVTAHTKEFIRKQM 201
P +I NK D A +++ +R Q+
Sbjct: 123 PFVILGNKIDHPDAVSEDELRHQL 146
>sp|Q54JJ3|ARFH_DICDI ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3
SV=1
Length = 189
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 55 LLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK 114
+ +F KK T I++ GL G+GK+ L Y+L+ G + S P T + E+ + K
Sbjct: 16 IFSLFEGKKQTRILMIGLDGAGKSTLLYKLK-----LGDIVSTVP---TIGFNVETIEYK 67
Query: 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVK 174
+ + DV G ++R + I+FVVD+ + E + +L +
Sbjct: 68 NLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTD-RERMDEVKEEIDTLLIQEEL-- 124
Query: 175 KKIPVLICCNKTDKVTA-HTKEFI 197
K I +LI NK D A +T E +
Sbjct: 125 KGIQILIFANKQDMNNAMNTSEIV 148
>sp|Q9P4C8|SAR1_PICPG Small COPII coat GTPase SAR1 OS=Komagataella pastoris (strain GS115
/ ATCC 20864) GN=SAR1 PE=3 SV=1
Length = 190
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P H S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQPT-----WHPTSEELSIGNVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ GIV++VD + P S D L + K+PV
Sbjct: 68 TFDLGGHEQARRVWKDYFPEVDGIVYLVDIAD--PERFEESRVELDALLKIEEL-SKVPV 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
L+ NK DK TA ++ +R +
Sbjct: 125 LVLGNKIDKSTAVSENELRHAL 146
>sp|Q9SHU5|ARF4_ARATH Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana
GN=At2g15310 PE=2 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPV 118
F K I++ GL GSGKT + Y+L+ G V + P T + E+ + K
Sbjct: 12 FLPKSKVRILMVGLDGSGKTTILYKLK-----LGEVVTTVP---TIGFNLETVEYKGINF 63
Query: 119 HLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178
+ D+ G ++R + A G++FVVD+ + S A L+ ILT++ + +
Sbjct: 64 TVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDS-ERLSEARNELHRILTDNEL--EGAC 120
Query: 179 VLICCNKTDKVTA 191
VL+ NK D A
Sbjct: 121 VLVFANKQDSRNA 133
>sp|Q18510|ARL6_CAEEL ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans
GN=arl-6 PE=2 SV=1
Length = 190
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK IV+ GL SGKT + QL+ T + + V+ + ST+ H
Sbjct: 15 KKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGH----VVTNFSTQN--LSFHAF 68
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G + R + + + G++FV+D+ + L + L ++ + VV + IP++I
Sbjct: 69 DMAGQMKYRSTWESYFHSSQGVIFVLDSSDRL-RMELLKDELMMVMEHKDVVSRGIPIVI 127
Query: 182 CCNKTD 187
NK D
Sbjct: 128 LANKMD 133
>sp|P0C583|SAR1_NEUCR Small COPII coat GTPase sar-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=sar-1 PE=3 SV=1
Length = 189
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ V ++P LH S + + V
Sbjct: 18 NKHGKLLFLGLDNAGKTTLLHMLKNDR-----VAILQPT-----LHPTSEELSVGNVKFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E LP A + L S K+
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALL-----SMEELAKV 122
Query: 178 PVLICCNKTDKVTAHTKEFIRKQM 201
P ++ NK D A +++ +R+++
Sbjct: 123 PFVVLGNKIDHPEAVSEDELRQRL 146
>sp|Q6BVA7|SAR1_DEBHA Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SAR1 PE=3 SV=1
Length = 190
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TLHPTSEELAIGSVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E A E L+ I ++V
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASV----- 122
Query: 178 PVLICCNKTDKVTA 191
P LI NK D +A
Sbjct: 123 PFLILGNKIDASSA 136
>sp|Q877B9|SAR1_ASPOR Small COPII coat GTPase sar1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=sar1 PE=3 SV=1
Length = 189
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + + K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|P0C951|SAR1_ASPNC Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=sar1 PE=3 SV=1
Length = 189
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ T+ +E+ + ++ T
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTT--------F 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDA--LEFLPNCSAASEYLYDILTNSTVVKKKIPV 179
D+ GH + R ++ P+ +GIVF+VDA E P A + L + + K+P
Sbjct: 70 DLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA-----KVPF 124
Query: 180 LICCNKTDKVTAHTKEFIRKQM 201
LI NK D A +++ +R Q+
Sbjct: 125 LILGNKIDHPDAVSEDELRHQL 146
>sp|A3LTA2|SAR1_PICST Small COPII coat GTPase SAR1 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=SAR1 PE=3 SV=1
Length = 190
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TLHPTSEELAIGSVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E A E L+ I S V
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHV----- 122
Query: 178 PVLICCNKTDKVTA 191
P LI NK D TA
Sbjct: 123 PFLILGNKIDVPTA 136
>sp|Q75A26|ARF_ASHGO ADP-ribosylation factor OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=ARF1 PE=3 SV=3
Length = 181
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVD 122
K I++ GL G+GKT + Y+L+ G V + P T + E+ + K + D
Sbjct: 16 KEMRILMVGLDGAGKTTVLYKLK-----LGEVVTTIP---TIGFNVETVEYKNISFTVWD 67
Query: 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182
V G ++RP + GI+FVVD+ + + A E L +L + + +L+
Sbjct: 68 VGGQDKIRPLWRHYFRNTEGIIFVVDSND-RSRIAEAREVLQRMLNEDEI--RNAVLLVF 124
Query: 183 CNKTD 187
NK D
Sbjct: 125 ANKQD 129
>sp|Q8MQT8|SAR1_GIAIN GTP-binding protein Sar1 OS=Giardia intestinalis GN=SAR1 PE=3 SV=1
Length = 191
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK TIV GL +GK+ L L++ +T T++ P + E G I+
Sbjct: 18 KKKATIVFVGLDNAGKSTLLAMLKNSAT-----TTVAPTQQP--TSQELVMGSIR-FKTF 69
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPN-CSAASEYLYDILTNSTVVKKKIPVL 180
D+ GH R ++++ + GIVF+VD+ + P+ + L ++L N + P+L
Sbjct: 70 DLGGHEVARQLWEQYVTNSDGIVFLVDSAD--PSRFEESRRTLQELLDNHDLA--TTPIL 125
Query: 181 ICCNKTDKVTAHTKE 195
I NK D TA + E
Sbjct: 126 ILSNKVDIQTAVSME 140
>sp|P38116|ARL1_YEAST ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ARL1 PE=1 SV=4
Length = 183
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIK 116
+++ K I++ GL G+GKT + Y+L G V + +P T + E+ K
Sbjct: 11 KLWGSNKELRILILGLDGAGKTTILYRL-----QIGEVVTTKP---TIGFNVETLSYKNL 62
Query: 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK 176
+++ D+ G + +RP + A ++FVVD+ + S AS+ L+ +L + +
Sbjct: 63 KLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD-KDRMSTASKELHLMLQEEEL--QD 119
Query: 177 IPVLICCNKTDKVTAHTKEFIRKQM 201
+L+ NK D+ A + + K++
Sbjct: 120 AALLVFANKQDQPGALSASEVSKEL 144
>sp|Q60Z38|ARL6_CAEBR ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae
GN=arl-6 PE=3 SV=1
Length = 190
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
KK IV+ GL SGKT + QL+ T + + V+ + ST+ H
Sbjct: 15 KKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGH----VVTNFSTQN--LSFHAF 68
Query: 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181
D+ G + R + + + G++FV+D+ + + + L+ +L + V + IPV+I
Sbjct: 69 DMAGQMKYRSTWESYFHSSQGVIFVLDSSDRV-RMELLKDELWLVLDHKDVASRGIPVVI 127
Query: 182 CCNKTD 187
NK D
Sbjct: 128 LANKMD 133
>sp|A5E5G3|SAR1_LODEL Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus (strain
ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL
YB-4239) GN=SAR1 PE=3 SV=2
Length = 190
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TLHPTSEELAIGSVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E A E L+ I S ++
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELS-----QV 122
Query: 178 PVLICCNKTDKVTA 191
P +I NK D TA
Sbjct: 123 PFVILGNKIDVPTA 136
>sp|Q59S78|SAR1_CANAL Small COPII coat GTPase SAR1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SAR1 PE=3 SV=2
Length = 190
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLV 121
K ++ GL +GKT L + L++ + +++P LH S + I V
Sbjct: 18 NKHAKLLFLGLDNAGKTTLLHMLKNDR-----LATLQP-----TLHPTSEELAIGSVRFT 67
Query: 122 --DVPGHSRLRPKLDEFLPQAAGIVFVVDAL--EFLPNCSAASEYLYDILTNSTVVKKKI 177
D+ GH + R ++ P+ GIVF+VDA E A E L+ I S ++
Sbjct: 68 TFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELS-----QV 122
Query: 178 PVLICCNKTDKVTA 191
P +I NK D TA
Sbjct: 123 PFVILGNKIDVPTA 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,547,099
Number of Sequences: 539616
Number of extensions: 3659320
Number of successful extensions: 17835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 671
Number of HSP's that attempted gapping in prelim test: 17424
Number of HSP's gapped (non-prelim): 887
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)