Query 024474
Match_columns 267
No_of_seqs 344 out of 2986
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0090 Signal recognition par 100.0 1.3E-31 2.9E-36 206.0 19.5 206 52-265 26-238 (238)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-30 3.5E-35 197.7 12.8 161 63-265 8-171 (205)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.7E-30 7.9E-35 195.1 13.3 163 62-267 3-168 (200)
4 cd04105 SR_beta Signal recogni 100.0 3.8E-29 8.3E-34 200.4 18.8 196 65-264 1-203 (203)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.4E-29 5.2E-34 190.7 14.8 164 62-265 20-184 (221)
6 cd04120 Rab12 Rab12 subfamily. 100.0 5.2E-28 1.1E-32 193.2 17.0 160 66-265 2-162 (202)
7 cd04121 Rab40 Rab40 subfamily. 100.0 4.3E-28 9.2E-33 191.9 16.2 158 63-264 5-165 (189)
8 KOG0078 GTP-binding protein SE 100.0 3.1E-28 6.7E-33 188.0 14.1 162 62-265 10-173 (207)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.7E-27 3.6E-32 191.0 17.7 162 65-265 1-167 (201)
10 cd04149 Arf6 Arf6 subfamily. 100.0 2.1E-27 4.7E-32 185.0 14.7 159 62-263 7-167 (168)
11 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.2E-27 9.2E-32 181.8 16.1 159 65-265 2-161 (162)
12 cd04136 Rap_like Rap-like subf 100.0 3.3E-27 7.1E-32 182.8 15.4 160 65-265 2-162 (163)
13 cd04122 Rab14 Rab14 subfamily. 100.0 3.3E-27 7E-32 183.6 15.2 160 65-265 3-163 (166)
14 KOG0394 Ras-related GTPase [Ge 100.0 3.9E-28 8.5E-33 182.3 9.5 168 61-263 6-175 (210)
15 cd04175 Rap1 Rap1 subgroup. T 100.0 3.3E-27 7.1E-32 183.2 15.0 160 65-265 2-162 (164)
16 cd04133 Rop_like Rop subfamily 100.0 4.1E-27 8.9E-32 184.3 15.5 159 65-264 2-171 (176)
17 smart00177 ARF ARF-like small 100.0 4.2E-27 9E-32 184.6 15.6 163 62-266 11-174 (175)
18 cd01865 Rab3 Rab3 subfamily. 100.0 4.7E-27 1E-31 182.6 15.5 160 65-265 2-162 (165)
19 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.2E-27 9E-32 181.8 14.9 157 65-263 1-158 (159)
20 cd00877 Ran Ran (Ras-related n 100.0 5.6E-27 1.2E-31 182.4 15.6 157 65-265 1-158 (166)
21 cd01875 RhoG RhoG subfamily. 99.9 6.4E-27 1.4E-31 186.1 16.1 172 64-265 3-176 (191)
22 cd04117 Rab15 Rab15 subfamily. 99.9 9.3E-27 2E-31 180.2 16.5 158 65-264 1-160 (161)
23 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.2E-27 1.1E-31 183.2 15.1 162 66-265 2-164 (170)
24 PTZ00133 ADP-ribosylation fact 99.9 7.2E-27 1.6E-31 184.4 15.8 164 61-266 14-178 (182)
25 cd01867 Rab8_Rab10_Rab13_like 99.9 8.9E-27 1.9E-31 181.4 16.0 161 64-265 3-164 (167)
26 PLN00223 ADP-ribosylation fact 99.9 6.2E-27 1.3E-31 184.5 15.2 162 62-266 15-178 (181)
27 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.1E-26 2.5E-31 179.9 16.4 162 64-266 2-164 (164)
28 cd01864 Rab19 Rab19 subfamily. 99.9 1.2E-26 2.6E-31 180.2 16.5 163 63-265 2-165 (165)
29 cd04128 Spg1 Spg1p. Spg1p (se 99.9 8.5E-27 1.9E-31 183.8 15.8 164 65-265 1-165 (182)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.1E-27 1.5E-31 182.8 15.1 161 64-265 2-163 (172)
31 PLN03071 GTP-binding nuclear p 99.9 6.5E-27 1.4E-31 189.7 15.1 160 62-265 11-171 (219)
32 smart00173 RAS Ras subfamily o 99.9 9.1E-27 2E-31 180.6 15.3 161 65-266 1-162 (164)
33 cd04176 Rap2 Rap2 subgroup. T 99.9 7.9E-27 1.7E-31 180.8 15.0 159 65-265 2-162 (163)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1E-26 2.2E-31 180.8 15.1 160 65-265 3-163 (166)
35 KOG0098 GTPase Rab2, small G p 99.9 3.5E-27 7.5E-32 177.6 11.8 157 63-261 5-163 (216)
36 cd04116 Rab9 Rab9 subfamily. 99.9 2E-26 4.3E-31 179.8 16.7 164 63-265 4-170 (170)
37 cd04119 RJL RJL (RabJ-Like) su 99.9 1.6E-26 3.5E-31 179.6 16.1 161 65-265 1-166 (168)
38 cd04157 Arl6 Arl6 subfamily. 99.9 1.3E-26 2.8E-31 179.2 15.0 158 66-263 1-161 (162)
39 cd04140 ARHI_like ARHI subfami 99.9 2.1E-26 4.6E-31 178.9 16.1 162 65-265 2-164 (165)
40 cd04110 Rab35 Rab35 subfamily. 99.9 2E-26 4.3E-31 184.4 16.4 161 63-265 5-166 (199)
41 KOG0079 GTP-binding protein H- 99.9 5.1E-27 1.1E-31 170.0 11.5 158 65-264 9-167 (198)
42 cd04109 Rab28 Rab28 subfamily. 99.9 2E-26 4.4E-31 186.6 16.3 163 65-265 1-165 (215)
43 PTZ00369 Ras-like protein; Pro 99.9 2.4E-26 5.1E-31 182.6 16.3 162 63-265 4-166 (189)
44 cd04158 ARD1 ARD1 subfamily. 99.9 2.4E-26 5.2E-31 179.3 15.8 158 66-266 1-161 (169)
45 cd04144 Ras2 Ras2 subfamily. 99.9 1.5E-26 3.2E-31 183.9 14.9 161 66-265 1-162 (190)
46 KOG0080 GTPase Rab18, small G 99.9 6.2E-27 1.4E-31 171.8 11.4 162 63-264 10-172 (209)
47 PF00025 Arf: ADP-ribosylation 99.9 4.4E-26 9.6E-31 178.6 16.8 161 61-264 11-174 (175)
48 cd01861 Rab6 Rab6 subfamily. 99.9 3.8E-26 8.2E-31 176.5 16.0 159 65-265 1-161 (161)
49 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 4E-26 8.7E-31 178.9 16.3 160 62-263 13-173 (174)
50 cd01868 Rab11_like Rab11-like. 99.9 3.2E-26 6.8E-31 177.8 15.4 161 64-265 3-164 (165)
51 cd04127 Rab27A Rab27a subfamil 99.9 2.7E-26 5.8E-31 180.8 15.0 165 64-265 4-176 (180)
52 cd04113 Rab4 Rab4 subfamily. 99.9 4.1E-26 9E-31 176.4 15.7 158 65-265 1-161 (161)
53 cd04154 Arl2 Arl2 subfamily. 99.9 3.1E-26 6.8E-31 179.4 15.1 161 61-263 11-172 (173)
54 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4.1E-26 8.8E-31 179.7 15.7 120 62-190 3-123 (182)
55 cd04124 RabL2 RabL2 subfamily. 99.9 5.2E-26 1.1E-30 176.0 16.1 156 65-265 1-157 (161)
56 cd04131 Rnd Rnd subfamily. Th 99.9 4.1E-26 8.9E-31 179.3 15.6 169 65-263 2-173 (178)
57 cd04134 Rho3 Rho3 subfamily. 99.9 3.1E-26 6.6E-31 181.9 15.0 171 65-265 1-173 (189)
58 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.8E-26 1.2E-30 176.8 16.1 159 66-263 1-166 (167)
59 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.4E-26 9.5E-31 178.0 15.4 163 64-267 2-170 (170)
60 cd04106 Rab23_lke Rab23-like s 99.9 6.6E-26 1.4E-30 175.4 16.1 158 65-264 1-161 (162)
61 cd01874 Cdc42 Cdc42 subfamily. 99.9 4.8E-26 1E-30 178.5 15.5 170 65-264 2-173 (175)
62 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.1E-26 4.6E-31 179.1 12.9 164 66-264 1-167 (167)
63 cd01871 Rac1_like Rac1-like su 99.9 7.7E-26 1.7E-30 177.2 16.0 169 65-264 2-173 (174)
64 smart00178 SAR Sar1p-like memb 99.9 9.7E-26 2.1E-30 178.3 16.6 169 62-265 15-184 (184)
65 cd01866 Rab2 Rab2 subfamily. 99.9 8E-26 1.7E-30 176.2 15.8 159 64-265 4-165 (168)
66 cd04112 Rab26 Rab26 subfamily. 99.9 9.2E-26 2E-30 179.5 16.2 160 65-265 1-162 (191)
67 KOG0095 GTPase Rab30, small G 99.9 1.6E-26 3.5E-31 167.7 10.4 158 64-263 7-166 (213)
68 KOG0087 GTPase Rab11/YPT3, sma 99.9 2.4E-26 5.2E-31 176.8 11.9 157 63-261 13-171 (222)
69 cd04143 Rhes_like Rhes_like su 99.9 1.1E-25 2.3E-30 185.3 16.6 163 65-265 1-170 (247)
70 cd04111 Rab39 Rab39 subfamily. 99.9 1.1E-25 2.4E-30 181.5 16.4 161 64-265 2-165 (211)
71 smart00176 RAN Ran (Ras-relate 99.9 5.7E-26 1.2E-30 181.2 14.3 152 70-265 1-153 (200)
72 cd01863 Rab18 Rab18 subfamily. 99.9 1.5E-25 3.2E-30 173.3 16.3 159 65-265 1-161 (161)
73 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.3E-25 2.8E-30 182.4 16.6 119 63-190 12-131 (232)
74 cd01860 Rab5_related Rab5-rela 99.9 1.7E-25 3.7E-30 173.2 16.5 159 65-266 2-163 (163)
75 cd04125 RabA_like RabA-like su 99.9 1.3E-25 2.9E-30 178.2 16.0 159 65-265 1-161 (188)
76 cd01862 Rab7 Rab7 subfamily. 99.9 2.1E-25 4.5E-30 174.2 16.7 162 65-265 1-166 (172)
77 KOG0086 GTPase Rab4, small G p 99.9 3.8E-26 8.3E-31 166.4 11.5 154 64-258 9-163 (214)
78 cd04132 Rho4_like Rho4-like su 99.9 2.6E-25 5.6E-30 176.3 16.8 161 65-265 1-166 (187)
79 cd04126 Rab20 Rab20 subfamily. 99.9 1.2E-25 2.6E-30 181.6 15.0 114 65-190 1-114 (220)
80 smart00175 RAB Rab subfamily o 99.9 2.3E-25 5E-30 172.5 15.9 159 65-266 1-162 (164)
81 PLN03110 Rab GTPase; Provision 99.9 1.8E-25 3.9E-30 181.1 15.8 161 63-265 11-173 (216)
82 cd00879 Sar1 Sar1 subfamily. 99.9 4.1E-25 8.9E-30 175.6 17.3 173 62-265 17-190 (190)
83 cd04142 RRP22 RRP22 subfamily. 99.9 2.3E-25 5E-30 177.8 15.7 163 65-264 1-172 (198)
84 cd04177 RSR1 RSR1 subgroup. R 99.9 3.1E-25 6.7E-30 172.8 16.1 161 65-265 2-163 (168)
85 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.8E-25 8.2E-30 174.8 16.8 166 64-265 3-169 (183)
86 cd04103 Centaurin_gamma Centau 99.9 2E-25 4.4E-30 172.0 14.6 156 65-264 1-157 (158)
87 cd04151 Arl1 Arl1 subfamily. 99.9 1.6E-25 3.6E-30 172.6 13.8 156 66-263 1-157 (158)
88 KOG0073 GTP-binding ADP-ribosy 99.9 4.2E-25 9.2E-30 162.9 14.9 164 61-265 13-177 (185)
89 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.6E-25 5.6E-30 172.6 14.5 155 67-263 2-163 (164)
90 cd04118 Rab24 Rab24 subfamily. 99.9 3.8E-25 8.3E-30 176.2 15.7 161 65-265 1-165 (193)
91 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.6E-25 1E-29 171.0 15.4 158 65-265 1-163 (164)
92 cd00878 Arf_Arl Arf (ADP-ribos 99.9 6.1E-25 1.3E-29 169.4 15.9 157 66-264 1-158 (158)
93 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 5.4E-25 1.2E-29 177.9 16.1 118 65-191 2-120 (222)
94 KOG0093 GTPase Rab3, small G p 99.9 2E-25 4.2E-30 161.6 11.9 160 63-263 20-180 (193)
95 cd04156 ARLTS1 ARLTS1 subfamil 99.9 4.5E-25 9.8E-30 170.4 14.1 158 66-263 1-159 (160)
96 cd04123 Rab21 Rab21 subfamily. 99.9 1E-24 2.2E-29 168.4 16.0 160 65-265 1-161 (162)
97 smart00174 RHO Rho (Ras homolo 99.9 5.6E-25 1.2E-29 172.2 14.7 168 67-264 1-170 (174)
98 PLN03108 Rab family protein; P 99.9 1E-24 2.2E-29 175.9 16.2 160 63-265 5-167 (210)
99 cd04139 RalA_RalB RalA/RalB su 99.9 9.3E-25 2E-29 169.0 15.3 158 65-265 1-161 (164)
100 cd01892 Miro2 Miro2 subfamily. 99.9 5.4E-25 1.2E-29 171.7 13.5 161 62-265 2-165 (169)
101 KOG0070 GTP-binding ADP-ribosy 99.9 3.9E-25 8.4E-30 167.3 12.0 166 59-266 12-178 (181)
102 cd01893 Miro1 Miro1 subfamily. 99.9 2.4E-24 5.3E-29 167.5 16.6 159 66-264 2-162 (166)
103 cd04147 Ras_dva Ras-dva subfam 99.9 1.1E-24 2.3E-29 174.3 15.0 162 66-266 1-163 (198)
104 COG0486 ThdF Predicted GTPase 99.9 9.6E-25 2.1E-29 187.4 15.4 205 9-265 156-375 (454)
105 cd04114 Rab30 Rab30 subfamily. 99.9 2.2E-24 4.8E-29 168.0 15.8 162 63-265 6-168 (169)
106 PF00071 Ras: Ras family; Int 99.9 2E-24 4.3E-29 167.1 14.7 157 66-265 1-160 (162)
107 KOG0071 GTP-binding ADP-ribosy 99.9 2.2E-24 4.8E-29 154.9 13.6 165 61-267 14-179 (180)
108 PF09439 SRPRB: Signal recogni 99.9 6.7E-25 1.4E-29 169.6 11.6 174 63-242 2-181 (181)
109 PLN03118 Rab family protein; P 99.9 3.9E-24 8.4E-29 172.8 16.5 164 62-265 12-176 (211)
110 cd00154 Rab Rab family. Rab G 99.9 4.4E-24 9.6E-29 163.8 15.9 156 65-263 1-159 (159)
111 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3E-24 6.5E-29 168.1 14.7 118 65-191 1-119 (173)
112 cd04135 Tc10 TC10 subfamily. 99.9 4.6E-24 1E-28 167.0 15.1 171 65-265 1-173 (174)
113 cd01870 RhoA_like RhoA-like su 99.9 4.2E-24 9E-29 167.4 14.8 171 65-265 2-174 (175)
114 cd04146 RERG_RasL11_like RERG/ 99.9 3E-24 6.4E-29 166.8 13.7 160 66-265 1-163 (165)
115 cd01873 RhoBTB RhoBTB subfamil 99.9 6.5E-24 1.4E-28 168.9 15.8 120 64-190 2-134 (195)
116 cd04148 RGK RGK subfamily. Th 99.9 4.2E-24 9.1E-29 173.5 14.9 158 65-265 1-162 (221)
117 cd04155 Arl3 Arl3 subfamily. 99.9 5.3E-24 1.1E-28 166.5 14.8 163 58-263 8-172 (173)
118 cd00157 Rho Rho (Ras homology) 99.9 6.7E-24 1.5E-28 165.5 15.0 159 65-263 1-170 (171)
119 cd04159 Arl10_like Arl10-like 99.9 1.1E-23 2.5E-28 161.6 15.8 156 67-263 2-158 (159)
120 cd01890 LepA LepA subfamily. 99.9 2.4E-23 5.3E-28 163.7 17.5 162 65-267 1-178 (179)
121 cd00876 Ras Ras family. The R 99.9 9E-24 2E-28 162.7 14.5 159 66-265 1-160 (160)
122 cd04137 RheB Rheb (Ras Homolog 99.9 1.4E-23 3E-28 165.3 15.1 160 65-265 2-162 (180)
123 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.2E-23 4.9E-28 184.2 17.8 167 11-191 145-325 (442)
124 KOG0075 GTP-binding ADP-ribosy 99.9 4.1E-24 8.9E-29 154.7 10.2 164 62-266 18-182 (186)
125 cd01897 NOG NOG1 is a nucleola 99.9 5.8E-23 1.3E-27 159.8 16.6 156 65-265 1-167 (168)
126 PRK05291 trmE tRNA modificatio 99.9 2.5E-23 5.5E-28 184.8 16.0 201 9-265 151-369 (449)
127 KOG0097 GTPase Rab14, small G 99.9 1.6E-23 3.4E-28 150.9 10.2 152 63-257 10-164 (215)
128 cd04171 SelB SelB subfamily. 99.9 8.7E-23 1.9E-27 158.0 15.3 158 66-263 2-163 (164)
129 cd04129 Rho2 Rho2 subfamily. 99.9 7.8E-23 1.7E-27 162.1 15.2 165 65-265 2-172 (187)
130 COG1084 Predicted GTPase [Gene 99.9 2.6E-22 5.6E-27 164.9 18.2 172 12-200 122-304 (346)
131 PTZ00132 GTP-binding nuclear p 99.9 1.3E-22 2.8E-27 164.3 16.4 161 61-265 6-167 (215)
132 KOG0088 GTPase Rab21, small G 99.9 7.8E-24 1.7E-28 155.2 8.0 162 62-264 11-173 (218)
133 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.2E-22 4.8E-27 156.4 16.7 164 65-266 1-166 (168)
134 KOG0091 GTPase Rab39, small G 99.9 6.7E-23 1.5E-27 151.1 11.3 161 64-263 8-170 (213)
135 TIGR00436 era GTP-binding prot 99.9 2.4E-22 5.2E-27 168.1 15.9 155 66-267 2-165 (270)
136 cd00881 GTP_translation_factor 99.9 2.6E-22 5.5E-27 158.9 15.1 176 66-267 1-188 (189)
137 TIGR03156 GTP_HflX GTP-binding 99.9 6.1E-22 1.3E-26 170.5 18.3 155 63-265 188-351 (351)
138 cd01889 SelB_euk SelB subfamil 99.9 2.8E-22 6E-27 159.6 14.9 170 65-267 1-187 (192)
139 cd01898 Obg Obg subfamily. Th 99.9 6.1E-22 1.3E-26 154.3 15.9 161 66-265 2-170 (170)
140 cd01891 TypA_BipA TypA (tyrosi 99.9 5E-22 1.1E-26 158.4 15.7 119 65-191 3-132 (194)
141 COG1159 Era GTPase [General fu 99.9 2.9E-22 6.3E-27 163.2 13.8 159 63-267 5-173 (298)
142 PRK15494 era GTPase Era; Provi 99.9 6.2E-22 1.3E-26 170.1 16.3 159 62-267 50-217 (339)
143 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-22 2.9E-27 153.7 9.8 147 65-261 1-156 (156)
144 cd04102 RabL3 RabL3 (Rab-like3 99.9 8.4E-22 1.8E-26 157.1 14.7 123 65-191 1-144 (202)
145 cd01878 HflX HflX subfamily. 99.9 4.4E-21 9.6E-26 154.1 18.3 155 62-265 39-204 (204)
146 KOG0081 GTPase Rab27, small G 99.9 4.2E-23 9.1E-28 151.5 4.5 161 66-263 11-178 (219)
147 KOG0076 GTP-binding ADP-ribosy 99.9 8E-23 1.7E-27 152.3 6.0 179 52-266 5-187 (197)
148 PF00009 GTP_EFTU: Elongation 99.9 1.1E-21 2.4E-26 155.6 12.8 168 63-266 2-187 (188)
149 PRK12299 obgE GTPase CgtA; Rev 99.9 2.8E-21 6.1E-26 165.1 15.9 161 65-265 159-327 (335)
150 TIGR00231 small_GTP small GTP- 99.9 4.5E-21 9.7E-26 146.7 15.1 157 65-262 2-160 (161)
151 TIGR02729 Obg_CgtA Obg family 99.9 4.7E-21 1E-25 163.6 15.5 162 65-266 158-329 (329)
152 PRK00454 engB GTP-binding prot 99.9 8.4E-21 1.8E-25 151.4 14.8 161 61-267 21-195 (196)
153 cd01894 EngA1 EngA1 subfamily. 99.9 4.7E-21 1E-25 147.0 12.9 148 68-265 1-157 (157)
154 cd01879 FeoB Ferrous iron tran 99.9 6E-21 1.3E-25 146.8 13.0 147 69-265 1-156 (158)
155 cd01888 eIF2_gamma eIF2-gamma 99.9 1.7E-20 3.7E-25 150.5 15.6 168 65-267 1-200 (203)
156 KOG0395 Ras-related GTPase [Ge 99.9 6.2E-21 1.3E-25 151.1 12.7 159 63-263 2-162 (196)
157 PLN00023 GTP-binding protein; 99.9 6.9E-21 1.5E-25 159.3 13.4 126 62-191 19-166 (334)
158 TIGR02528 EutP ethanolamine ut 99.9 8.1E-21 1.8E-25 143.7 12.7 134 66-262 2-141 (142)
159 PRK00089 era GTPase Era; Revie 99.9 3.2E-20 7E-25 157.2 17.4 160 63-267 4-172 (292)
160 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.3E-22 2.8E-27 144.8 2.1 156 68-265 1-159 (192)
161 TIGR01393 lepA GTP-binding pro 99.9 1.8E-20 3.9E-25 171.4 16.7 163 64-267 3-181 (595)
162 KOG0074 GTP-binding ADP-ribosy 99.9 4.9E-21 1.1E-25 138.0 10.2 166 61-267 14-180 (185)
163 PRK11058 GTPase HflX; Provisio 99.9 4.6E-20 1E-24 162.3 18.2 158 63-266 196-362 (426)
164 PRK04213 GTP-binding protein; 99.8 2.8E-20 6.1E-25 149.1 14.9 163 62-266 7-192 (201)
165 TIGR00491 aIF-2 translation in 99.8 5E-20 1.1E-24 167.4 18.3 183 63-263 3-213 (590)
166 TIGR03598 GTPase_YsxC ribosome 99.8 1.8E-20 4E-25 147.5 13.5 151 61-255 15-179 (179)
167 KOG0072 GTP-binding ADP-ribosy 99.8 8E-21 1.7E-25 137.3 10.2 163 62-266 16-179 (182)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.7E-20 7.9E-25 142.0 14.6 148 64-266 1-157 (157)
169 TIGR00487 IF-2 translation ini 99.8 6.5E-20 1.4E-24 167.0 18.1 162 62-263 85-247 (587)
170 cd01895 EngA2 EngA2 subfamily. 99.8 4.8E-20 1.1E-24 143.6 14.8 158 64-264 2-173 (174)
171 PRK03003 GTP-binding protein D 99.8 3.4E-20 7.4E-25 166.4 15.7 155 62-266 36-199 (472)
172 KOG0393 Ras-related small GTPa 99.8 2.8E-21 6E-26 150.1 7.0 173 63-265 3-179 (198)
173 PRK03003 GTP-binding protein D 99.8 3.7E-20 8.1E-25 166.2 15.0 160 63-265 210-381 (472)
174 TIGR03594 GTPase_EngA ribosome 99.8 3.3E-20 7.2E-25 165.3 14.4 160 63-264 171-342 (429)
175 cd01884 EF_Tu EF-Tu subfamily. 99.8 7.2E-20 1.6E-24 145.4 14.7 169 64-267 2-194 (195)
176 cd01881 Obg_like The Obg-like 99.8 3.7E-20 8E-25 144.9 12.8 157 69-265 1-176 (176)
177 cd04163 Era Era subfamily. Er 99.8 1E-19 2.2E-24 140.6 14.9 157 64-265 3-168 (168)
178 CHL00189 infB translation init 99.8 9.4E-20 2E-24 168.3 16.8 166 62-264 242-408 (742)
179 PRK05306 infB translation init 99.8 1.4E-19 3E-24 168.6 17.8 162 61-263 287-449 (787)
180 PRK12296 obgE GTPase CgtA; Rev 99.8 8.2E-20 1.8E-24 161.8 14.9 162 64-265 159-339 (500)
181 COG1100 GTPase SAR1 and relate 99.8 1.1E-19 2.5E-24 147.4 14.4 124 65-194 6-129 (219)
182 cd00882 Ras_like_GTPase Ras-li 99.8 1.4E-19 3.1E-24 137.1 13.0 155 69-263 1-157 (157)
183 cd01885 EF2 EF2 (for archaea a 99.8 1.1E-18 2.4E-23 140.9 18.8 188 65-267 1-221 (222)
184 PRK15467 ethanolamine utilizat 99.8 1.4E-19 3.1E-24 139.4 13.0 139 66-265 3-146 (158)
185 PRK12298 obgE GTPase CgtA; Rev 99.8 2E-19 4.3E-24 156.6 15.3 163 66-266 161-333 (390)
186 COG1160 Predicted GTPases [Gen 99.8 1.6E-19 3.4E-24 155.1 14.2 151 65-265 4-164 (444)
187 PRK12297 obgE GTPase CgtA; Rev 99.8 3.1E-19 6.8E-24 156.2 16.0 157 66-265 160-326 (424)
188 TIGR00475 selB selenocysteine- 99.8 1.7E-19 3.7E-24 164.8 14.9 162 66-265 2-165 (581)
189 PRK05433 GTP-binding protein L 99.8 4.1E-19 9E-24 162.6 17.2 164 63-267 6-185 (600)
190 TIGR03594 GTPase_EngA ribosome 99.8 2.5E-19 5.4E-24 159.7 14.5 151 66-266 1-160 (429)
191 PTZ00099 rab6; Provisional 99.8 2.4E-19 5.1E-24 140.4 12.5 123 104-266 17-142 (176)
192 PRK00093 GTP-binding protein D 99.8 3.8E-19 8.1E-24 158.8 15.3 149 65-263 2-159 (435)
193 PRK00093 GTP-binding protein D 99.8 3.6E-19 7.7E-24 158.9 14.9 159 62-263 171-341 (435)
194 cd04168 TetM_like Tet(M)-like 99.8 6.2E-19 1.3E-23 144.3 15.0 189 66-266 1-235 (237)
195 PF08477 Miro: Miro-like prote 99.8 1.1E-19 2.4E-24 133.3 9.1 116 66-187 1-119 (119)
196 PRK04004 translation initiatio 99.8 9.9E-19 2.1E-23 159.5 17.1 183 62-262 4-214 (586)
197 TIGR01394 TypA_BipA GTP-bindin 99.8 7.5E-19 1.6E-23 160.4 15.9 169 65-267 2-192 (594)
198 COG2229 Predicted GTPase [Gene 99.8 2.2E-18 4.8E-23 130.5 15.1 161 62-264 8-176 (187)
199 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.9E-19 1.7E-23 141.3 13.6 117 66-190 1-144 (208)
200 cd00880 Era_like Era (E. coli 99.8 1.4E-18 3E-23 133.0 14.1 155 69-265 1-163 (163)
201 PF10662 PduV-EutP: Ethanolami 99.8 9.7E-19 2.1E-23 129.6 12.3 136 65-263 2-143 (143)
202 PRK10218 GTP-binding protein; 99.8 2.4E-18 5.1E-23 157.0 17.3 171 63-267 4-196 (607)
203 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.6E-18 3.4E-23 140.7 14.3 184 66-263 1-220 (224)
204 cd04167 Snu114p Snu114p subfam 99.8 8.2E-18 1.8E-22 136.0 18.6 180 65-266 1-211 (213)
205 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.6E-23 148.8 15.1 159 63-264 177-349 (444)
206 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-18 3.5E-23 159.0 15.7 164 66-267 2-167 (614)
207 PRK09518 bifunctional cytidyla 99.8 2.1E-18 4.5E-23 161.8 16.5 155 62-266 273-436 (712)
208 PRK09554 feoB ferrous iron tra 99.8 1.6E-18 3.5E-23 162.2 15.4 152 64-265 3-167 (772)
209 KOG4252 GTP-binding protein [S 99.8 7.3E-20 1.6E-24 137.2 5.1 122 63-192 19-140 (246)
210 TIGR03680 eif2g_arch translati 99.8 1.6E-18 3.5E-23 152.7 14.3 170 62-266 2-196 (406)
211 TIGR00483 EF-1_alpha translati 99.8 1.3E-18 2.8E-23 154.5 13.3 172 61-264 4-217 (426)
212 TIGR00437 feoB ferrous iron tr 99.8 1.2E-18 2.6E-23 159.5 12.8 144 71-264 1-153 (591)
213 PRK09518 bifunctional cytidyla 99.8 2.4E-18 5.1E-23 161.4 14.6 160 63-265 449-620 (712)
214 PRK12317 elongation factor 1-a 99.8 3.8E-18 8.3E-23 151.6 15.2 124 62-190 4-153 (425)
215 cd01883 EF1_alpha Eukaryotic e 99.8 4.3E-18 9.3E-23 138.1 13.4 121 66-191 1-152 (219)
216 cd01876 YihA_EngB The YihA (En 99.8 1.5E-17 3.3E-22 128.7 15.5 156 66-265 1-170 (170)
217 PRK12736 elongation factor Tu; 99.8 6E-18 1.3E-22 148.6 14.5 171 61-266 9-201 (394)
218 PRK12735 elongation factor Tu; 99.8 8.8E-18 1.9E-22 147.6 14.7 172 60-266 8-203 (396)
219 PRK04000 translation initiatio 99.8 7.9E-18 1.7E-22 148.3 14.4 172 60-266 5-201 (411)
220 COG0532 InfB Translation initi 99.7 3.1E-17 6.8E-22 143.2 15.1 164 62-263 3-167 (509)
221 cd01896 DRG The developmentall 99.7 2.1E-17 4.5E-22 135.1 13.0 82 66-152 2-90 (233)
222 cd04169 RF3 RF3 subfamily. Pe 99.7 1.9E-17 4.2E-22 137.7 12.6 122 64-193 2-140 (267)
223 CHL00071 tufA elongation facto 99.7 2.5E-17 5.5E-22 145.3 13.8 122 61-190 9-142 (409)
224 COG0218 Predicted GTPase [Gene 99.7 1.1E-16 2.4E-21 124.0 15.3 163 61-266 21-197 (200)
225 cd04170 EF-G_bact Elongation f 99.7 5.5E-17 1.2E-21 135.7 14.3 130 66-204 1-143 (268)
226 KOG1423 Ras-like GTPase ERA [C 99.7 2.9E-17 6.3E-22 133.6 12.0 187 62-267 70-272 (379)
227 KOG0462 Elongation factor-type 99.7 6.3E-17 1.4E-21 140.7 14.7 161 62-267 58-236 (650)
228 PRK00741 prfC peptide chain re 99.7 3.3E-17 7.2E-22 147.8 13.4 133 63-204 9-158 (526)
229 KOG1145 Mitochondrial translat 99.7 6.7E-17 1.5E-21 140.5 14.0 161 62-262 151-312 (683)
230 TIGR00503 prfC peptide chain r 99.7 9.2E-17 2E-21 145.0 15.1 135 62-205 9-160 (527)
231 TIGR00485 EF-Tu translation el 99.7 7.2E-17 1.6E-21 141.9 14.1 122 61-190 9-142 (394)
232 KOG1490 GTP-binding protein CR 99.7 4.4E-17 9.5E-22 140.3 12.2 201 11-257 121-332 (620)
233 cd04104 p47_IIGP_like p47 (47- 99.7 2.2E-16 4.8E-21 126.0 15.2 115 65-190 2-121 (197)
234 KOG1191 Mitochondrial GTPase [ 99.7 1.4E-16 3.1E-21 137.2 14.9 175 13-191 210-404 (531)
235 cd01886 EF-G Elongation factor 99.7 7.8E-17 1.7E-21 134.2 12.9 129 66-203 1-142 (270)
236 PRK00049 elongation factor Tu; 99.7 1.6E-16 3.4E-21 139.6 14.2 172 61-266 9-203 (396)
237 PLN03126 Elongation factor Tu; 99.7 1.6E-16 3.5E-21 141.7 14.3 122 61-190 78-211 (478)
238 KOG0077 Vesicle coat complex C 99.7 9.9E-17 2.1E-21 119.0 10.5 174 62-265 18-192 (193)
239 KOG1489 Predicted GTP-binding 99.7 2E-16 4.3E-21 129.4 13.3 159 64-265 196-366 (366)
240 PTZ00141 elongation factor 1- 99.7 3.3E-16 7.1E-21 139.2 15.7 170 62-264 5-223 (446)
241 TIGR02034 CysN sulfate adenyly 99.7 1.2E-16 2.6E-21 140.8 12.7 119 65-190 1-147 (406)
242 PLN03127 Elongation factor Tu; 99.7 2.4E-16 5.2E-21 139.8 14.3 122 61-190 58-191 (447)
243 PRK05124 cysN sulfate adenylyl 99.7 8.2E-16 1.8E-20 137.7 17.6 123 61-190 24-174 (474)
244 TIGR00484 EF-G translation elo 99.7 2.6E-16 5.6E-21 147.3 14.5 133 62-203 8-153 (689)
245 PTZ00327 eukaryotic translatio 99.7 3.8E-16 8.2E-21 138.4 14.5 172 61-267 31-234 (460)
246 PLN00043 elongation factor 1-a 99.7 5.1E-16 1.1E-20 137.9 14.7 121 61-189 4-158 (447)
247 COG2262 HflX GTPases [General 99.7 2.3E-15 4.9E-20 127.8 17.6 156 61-266 189-356 (411)
248 PRK05506 bifunctional sulfate 99.7 3.6E-16 7.9E-21 145.1 13.6 124 60-190 20-171 (632)
249 PRK13351 elongation factor G; 99.7 3.1E-16 6.7E-21 147.1 12.9 134 62-204 6-152 (687)
250 COG0370 FeoB Fe2+ transport sy 99.7 4.8E-16 1E-20 139.5 13.3 152 63-264 2-162 (653)
251 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.2E-15 2.6E-20 123.3 14.2 170 66-265 1-175 (232)
252 COG0481 LepA Membrane GTPase L 99.7 8.4E-16 1.8E-20 131.8 12.7 163 62-267 7-187 (603)
253 KOG3883 Ras family small GTPas 99.7 5.2E-15 1.1E-19 108.4 15.0 129 61-194 6-136 (198)
254 PF01926 MMR_HSR1: 50S ribosom 99.7 2.2E-15 4.7E-20 110.0 12.2 107 66-185 1-116 (116)
255 cd01899 Ygr210 Ygr210 subfamil 99.6 1.9E-15 4E-20 128.3 12.6 85 67-151 1-111 (318)
256 KOG1673 Ras GTPases [General f 99.6 8.6E-16 1.9E-20 112.7 8.9 165 63-264 19-184 (205)
257 PRK12739 elongation factor G; 99.6 2E-15 4.4E-20 141.3 13.3 135 62-205 6-153 (691)
258 PRK09435 membrane ATPase/prote 99.6 1.2E-14 2.6E-19 123.4 16.7 208 11-266 11-260 (332)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.5E-15 1.2E-19 117.9 13.5 126 65-197 1-137 (196)
260 COG1217 TypA Predicted membran 99.6 6.2E-15 1.3E-19 126.2 14.4 171 63-267 4-196 (603)
261 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 5.6E-16 1.2E-20 117.5 6.8 159 63-265 9-168 (216)
262 PRK00007 elongation factor G; 99.6 2.9E-15 6.2E-20 140.2 13.2 135 62-205 8-155 (693)
263 PRK09866 hypothetical protein; 99.6 8.2E-14 1.8E-18 125.0 21.3 114 116-264 230-351 (741)
264 KOG1707 Predicted Ras related/ 99.6 6.9E-15 1.5E-19 129.1 12.4 127 62-194 7-133 (625)
265 cd01850 CDC_Septin CDC/Septin. 99.6 1.6E-14 3.4E-19 120.9 13.7 135 64-208 4-175 (276)
266 COG1163 DRG Predicted GTPase [ 99.6 9.6E-14 2.1E-18 114.3 16.9 96 64-164 63-165 (365)
267 COG3596 Predicted GTPase [Gene 99.6 6E-14 1.3E-18 113.3 14.9 138 61-208 36-189 (296)
268 PRK14845 translation initiatio 99.6 3E-14 6.5E-19 136.0 15.1 174 75-263 472-670 (1049)
269 PRK13768 GTPase; Provisional 99.6 3.4E-14 7.5E-19 117.4 12.5 138 117-266 98-247 (253)
270 COG0536 Obg Predicted GTPase [ 99.6 2.1E-14 4.6E-19 119.0 10.8 121 66-191 161-290 (369)
271 COG5256 TEF1 Translation elong 99.6 7.2E-14 1.6E-18 118.7 13.4 162 62-253 5-197 (428)
272 TIGR00750 lao LAO/AO transport 99.5 2E-13 4.3E-18 115.8 15.2 193 21-265 3-237 (300)
273 KOG1532 GTPase XAB1, interacts 99.5 5.9E-14 1.3E-18 112.9 11.1 192 61-265 16-263 (366)
274 PRK12740 elongation factor G; 99.5 5.9E-14 1.3E-18 131.5 12.7 125 70-203 1-138 (668)
275 PRK07560 elongation factor EF- 99.5 3.3E-13 7.1E-18 127.2 16.5 137 62-209 18-175 (731)
276 PRK09602 translation-associate 99.5 1.8E-13 4E-18 119.5 13.6 86 65-150 2-113 (396)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.7E-13 1.9E-17 110.2 16.8 123 61-191 35-168 (313)
278 COG1703 ArgK Putative periplas 99.5 2E-13 4.4E-18 111.6 12.6 209 8-265 3-253 (323)
279 PLN00116 translation elongatio 99.5 2.2E-13 4.8E-18 129.9 14.8 146 61-214 16-191 (843)
280 KOG1144 Translation initiation 99.5 1.5E-13 3.2E-18 123.4 12.3 189 61-264 472-685 (1064)
281 KOG0461 Selenocysteine-specifi 99.5 4.3E-13 9.2E-18 111.2 14.1 172 62-265 5-192 (522)
282 KOG4423 GTP-binding protein-li 99.5 1.4E-15 3.1E-20 115.0 -0.6 164 65-264 26-192 (229)
283 TIGR00490 aEF-2 translation el 99.5 1.4E-13 3.1E-18 129.4 12.3 140 62-209 17-174 (720)
284 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.4E-17 105.9 15.7 111 62-191 37-148 (225)
285 PTZ00416 elongation factor 2; 99.5 3.9E-13 8.4E-18 128.0 13.9 145 62-214 17-185 (836)
286 COG4917 EutP Ethanolamine util 99.5 2.3E-13 4.9E-18 96.6 8.7 138 65-264 2-144 (148)
287 PF03308 ArgK: ArgK protein; 99.5 7E-14 1.5E-18 112.8 6.4 186 24-264 1-228 (266)
288 COG4108 PrfC Peptide chain rel 99.5 1.9E-12 4E-17 110.5 14.3 135 63-206 11-162 (528)
289 cd01853 Toc34_like Toc34-like 99.4 1.2E-11 2.6E-16 101.8 16.4 124 61-192 28-165 (249)
290 PTZ00258 GTP-binding protein; 99.4 9.2E-12 2E-16 107.9 13.7 90 61-150 18-126 (390)
291 PF03029 ATP_bind_1: Conserved 99.4 1.5E-12 3.2E-17 106.5 8.3 133 117-265 92-236 (238)
292 KOG0468 U5 snRNP-specific prot 99.4 1.2E-11 2.5E-16 110.3 13.5 146 62-217 126-293 (971)
293 PF05049 IIGP: Interferon-indu 99.4 1.7E-11 3.6E-16 105.2 13.4 112 63-188 34-153 (376)
294 PF04548 AIG1: AIG1 family; I 99.3 1.9E-11 4.1E-16 98.7 12.6 123 66-195 2-135 (212)
295 COG2895 CysN GTPases - Sulfate 99.3 1.2E-11 2.5E-16 103.1 10.5 122 62-192 4-155 (431)
296 cd00066 G-alpha G protein alph 99.3 4.8E-11 1E-15 101.9 14.3 73 115-189 160-241 (317)
297 COG0480 FusA Translation elong 99.3 1.3E-11 2.8E-16 114.1 11.4 122 62-192 8-144 (697)
298 TIGR00101 ureG urease accessor 99.3 9.4E-11 2E-15 93.5 13.9 100 116-266 92-196 (199)
299 KOG0458 Elongation factor 1 al 99.3 3.3E-11 7.1E-16 106.3 11.9 160 62-253 175-368 (603)
300 smart00275 G_alpha G protein a 99.3 1.5E-10 3.3E-15 99.7 14.5 72 116-189 184-264 (342)
301 COG3276 SelB Selenocysteine-sp 99.3 6.7E-11 1.5E-15 101.5 11.6 159 66-265 2-161 (447)
302 PF00735 Septin: Septin; Inte 99.3 5.4E-11 1.2E-15 99.5 10.8 142 64-213 4-179 (281)
303 COG5257 GCD11 Translation init 99.2 5E-11 1.1E-15 98.2 9.3 171 62-267 8-203 (415)
304 TIGR00073 hypB hydrogenase acc 99.2 2.4E-10 5.2E-15 91.9 12.8 158 62-266 20-207 (207)
305 COG5019 CDC3 Septin family pro 99.2 3.7E-10 8E-15 95.1 14.1 143 60-210 19-196 (373)
306 KOG0410 Predicted GTP binding 99.2 9.5E-11 2.1E-15 96.7 10.3 152 61-266 175-341 (410)
307 PF00350 Dynamin_N: Dynamin fa 99.2 1.5E-10 3.3E-15 89.8 10.7 64 116-186 101-168 (168)
308 COG0050 TufB GTPases - transla 99.2 1.5E-10 3.3E-15 94.3 9.0 173 60-267 8-202 (394)
309 PRK10463 hydrogenase nickel in 99.2 1.3E-09 2.8E-14 90.7 14.5 32 56-87 96-127 (290)
310 smart00053 DYNc Dynamin, GTPas 99.2 5.7E-10 1.2E-14 91.0 12.1 69 116-191 125-207 (240)
311 TIGR02836 spore_IV_A stage IV 99.1 1.9E-09 4.2E-14 92.7 14.6 121 62-188 15-192 (492)
312 KOG2655 Septin family protein 99.1 1.7E-09 3.7E-14 91.8 12.6 146 59-212 16-194 (366)
313 KOG1547 Septin CDC10 and relat 99.1 8.4E-10 1.8E-14 87.5 10.0 148 61-216 43-224 (336)
314 COG0378 HypB Ni2+-binding GTPa 99.1 9.7E-10 2.1E-14 84.9 9.8 81 141-265 119-200 (202)
315 KOG0467 Translation elongation 99.1 2.4E-09 5.2E-14 97.1 13.5 182 62-253 7-203 (887)
316 TIGR00157 ribosome small subun 99.1 6.7E-10 1.4E-14 91.5 8.7 97 127-264 24-121 (245)
317 COG0012 Predicted GTPase, prob 99.0 6.3E-09 1.4E-13 88.3 13.2 88 64-151 2-109 (372)
318 TIGR00993 3a0901s04IAP86 chlor 99.0 6.5E-09 1.4E-13 94.3 14.1 120 64-191 118-251 (763)
319 PRK09601 GTP-binding protein Y 99.0 1.9E-09 4.2E-14 92.6 9.2 86 65-150 3-107 (364)
320 KOG3886 GTP-binding protein [S 99.0 1.6E-09 3.5E-14 85.5 7.8 137 64-207 4-147 (295)
321 cd01900 YchF YchF subfamily. 99.0 1.3E-09 2.7E-14 90.7 7.5 84 67-150 1-103 (274)
322 COG5258 GTPBP1 GTPase [General 99.0 5.6E-09 1.2E-13 88.2 11.1 185 62-262 115-335 (527)
323 KOG0460 Mitochondrial translat 98.9 4.2E-09 9.1E-14 87.6 8.7 173 60-266 50-245 (449)
324 KOG0465 Mitochondrial elongati 98.9 2.8E-09 6E-14 94.7 7.2 123 63-194 38-174 (721)
325 KOG0082 G-protein alpha subuni 98.9 2.4E-08 5.3E-13 84.8 12.2 74 115-190 194-276 (354)
326 KOG3887 Predicted small GTPase 98.9 8.4E-08 1.8E-12 76.4 13.5 117 65-193 28-152 (347)
327 KOG1954 Endocytosis/signaling 98.9 4.1E-08 9E-13 82.7 11.8 124 62-193 56-228 (532)
328 KOG3905 Dynein light intermedi 98.9 1.8E-07 3.9E-12 77.6 15.3 96 62-163 50-151 (473)
329 KOG1143 Predicted translation 98.8 1.1E-08 2.5E-13 86.1 7.7 189 64-267 167-388 (591)
330 KOG0463 GTP-binding protein GP 98.8 7.1E-09 1.5E-13 87.4 6.5 185 64-262 133-354 (641)
331 cd01859 MJ1464 MJ1464. This f 98.8 1.1E-08 2.3E-13 78.5 7.1 92 130-265 3-95 (156)
332 smart00010 small_GTPase Small 98.8 2.9E-08 6.4E-13 72.6 7.9 91 65-190 1-91 (124)
333 cd01855 YqeH YqeH. YqeH is an 98.8 3.7E-08 8E-13 78.1 8.7 100 129-265 24-124 (190)
334 cd01858 NGP_1 NGP-1. Autoanti 98.8 5E-08 1.1E-12 74.9 8.9 58 62-126 100-157 (157)
335 KOG0469 Elongation factor 2 [T 98.8 2.9E-08 6.2E-13 86.6 8.3 143 61-214 16-191 (842)
336 cd04178 Nucleostemin_like Nucl 98.8 3.9E-08 8.5E-13 76.5 8.2 58 62-126 115-172 (172)
337 PF05783 DLIC: Dynein light in 98.8 5.2E-07 1.1E-11 80.5 16.1 96 62-163 23-124 (472)
338 KOG0464 Elongation factor G [T 98.8 5.4E-09 1.2E-13 89.1 3.3 121 63-191 36-169 (753)
339 COG5192 BMS1 GTP-binding prote 98.7 9.1E-08 2E-12 84.7 10.6 112 62-192 67-179 (1077)
340 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.9E-08 1.3E-12 74.5 7.6 88 135-264 4-93 (157)
341 COG1161 Predicted GTPases [Gen 98.7 3.9E-08 8.5E-13 84.1 7.2 61 61-128 129-189 (322)
342 KOG0448 Mitofusin 1 GTPase, in 98.7 4.2E-07 9.1E-12 82.2 13.8 80 117-206 207-289 (749)
343 PRK12289 GTPase RsgA; Reviewed 98.7 6.6E-08 1.4E-12 83.4 8.4 90 133-264 83-173 (352)
344 KOG1707 Predicted Ras related/ 98.7 1.1E-07 2.5E-12 84.4 9.5 120 61-191 422-541 (625)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.8E-08 1E-12 73.6 6.0 56 65-127 84-139 (141)
346 KOG1486 GTP-binding protein DR 98.6 5.3E-07 1.1E-11 72.4 11.2 97 64-165 62-165 (364)
347 KOG2486 Predicted GTPase [Gene 98.6 4.2E-08 9.1E-13 79.7 4.5 115 62-190 134-262 (320)
348 TIGR03596 GTPase_YlqF ribosome 98.6 1.2E-07 2.6E-12 79.7 7.1 59 62-127 116-174 (276)
349 cd01851 GBP Guanylate-binding 98.6 1.6E-06 3.5E-11 70.5 13.0 89 62-152 5-104 (224)
350 PF03193 DUF258: Protein of un 98.6 4.5E-08 9.9E-13 74.6 3.5 24 65-88 36-59 (161)
351 PRK09563 rbgA GTPase YlqF; Rev 98.6 4E-07 8.7E-12 76.9 9.3 60 62-128 119-178 (287)
352 cd01855 YqeH YqeH. YqeH is an 98.6 1.3E-07 2.8E-12 75.0 5.8 59 63-126 126-190 (190)
353 cd01856 YlqF YlqF. Proteins o 98.5 1.4E-07 3.1E-12 73.4 5.8 97 123-265 2-100 (171)
354 cd01856 YlqF YlqF. Proteins o 98.5 3.2E-07 6.9E-12 71.5 7.5 58 62-126 113-170 (171)
355 cd03112 CobW_like The function 98.5 1.2E-06 2.5E-11 67.4 9.7 65 115-188 86-158 (158)
356 PRK00098 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 76.5 8.6 87 137-264 78-165 (298)
357 cd01849 YlqF_related_GTPase Yl 98.5 4.5E-07 9.7E-12 69.4 7.4 81 141-264 1-83 (155)
358 cd01859 MJ1464 MJ1464. This f 98.5 8.9E-07 1.9E-11 67.8 8.8 58 62-126 99-156 (156)
359 cd01854 YjeQ_engC YjeQ/EngC. 98.5 5.8E-07 1.2E-11 75.9 8.2 86 136-263 75-161 (287)
360 TIGR00092 GTP-binding protein 98.5 9E-07 1.9E-11 76.3 9.2 87 65-151 3-109 (368)
361 KOG0466 Translation initiation 98.5 1.5E-07 3.2E-12 77.5 4.0 112 117-266 126-241 (466)
362 TIGR03597 GTPase_YqeH ribosome 98.5 6.7E-07 1.5E-11 77.9 8.4 100 126-264 50-151 (360)
363 KOG1491 Predicted GTP-binding 98.5 5.1E-07 1.1E-11 75.5 7.1 92 60-151 16-126 (391)
364 cd01849 YlqF_related_GTPase Yl 98.5 3.9E-07 8.5E-12 69.8 6.0 58 62-126 98-155 (155)
365 TIGR03596 GTPase_YlqF ribosome 98.4 4.1E-07 8.8E-12 76.4 6.2 97 123-265 4-102 (276)
366 TIGR01425 SRP54_euk signal rec 98.4 5E-06 1.1E-10 73.3 12.4 65 115-189 182-252 (429)
367 PRK12288 GTPase RsgA; Reviewed 98.4 2.3E-06 5E-11 73.9 10.2 88 137-264 118-206 (347)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 8.3E-07 1.8E-11 66.8 6.5 51 133-190 5-56 (141)
369 PRK12288 GTPase RsgA; Reviewed 98.4 2.9E-07 6.4E-12 79.4 4.1 62 66-130 207-271 (347)
370 PRK12289 GTPase RsgA; Reviewed 98.3 9.2E-07 2E-11 76.4 6.1 23 66-88 174-196 (352)
371 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.1E-06 2.4E-11 74.3 5.3 97 123-265 7-105 (287)
372 KOG2485 Conserved ATP/GTP bind 98.3 3.5E-06 7.6E-11 69.8 7.9 115 13-128 91-208 (335)
373 KOG3859 Septins (P-loop GTPase 98.3 3.6E-06 7.8E-11 68.6 7.7 121 62-191 40-191 (406)
374 PRK13796 GTPase YqeH; Provisio 98.2 4E-06 8.8E-11 73.1 8.0 61 63-128 159-222 (365)
375 PF02492 cobW: CobW/HypB/UreG, 98.2 2.9E-06 6.2E-11 66.5 6.2 82 115-208 84-170 (178)
376 TIGR00157 ribosome small subun 98.2 1.2E-06 2.5E-11 72.3 4.1 24 65-88 121-144 (245)
377 TIGR00064 ftsY signal recognit 98.2 8.4E-05 1.8E-09 62.2 14.9 68 114-191 153-232 (272)
378 TIGR03597 GTPase_YqeH ribosome 98.2 8.1E-06 1.8E-10 71.1 9.0 127 64-204 154-294 (360)
379 PRK00098 GTPase RsgA; Reviewed 98.2 2.7E-06 5.9E-11 72.2 5.4 26 63-88 163-188 (298)
380 cd03114 ArgK-like The function 98.2 1.1E-05 2.4E-10 61.2 8.2 58 115-187 91-148 (148)
381 TIGR03348 VI_IcmF type VI secr 98.2 7.4E-06 1.6E-10 81.6 9.2 117 65-189 112-256 (1169)
382 KOG0459 Polypeptide release fa 98.2 3E-06 6.5E-11 72.4 5.3 170 62-258 77-278 (501)
383 PRK10416 signal recognition pa 98.2 2.8E-05 6E-10 66.5 11.3 117 63-189 113-272 (318)
384 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 8.8E-11 70.8 6.1 62 65-129 162-226 (287)
385 KOG1424 Predicted GTP-binding 98.1 2.2E-06 4.9E-11 75.3 4.4 57 64-127 314-370 (562)
386 COG0523 Putative GTPases (G3E 98.1 1.8E-05 4E-10 67.5 9.7 82 116-209 85-174 (323)
387 KOG1487 GTP-binding protein DR 98.1 3.8E-06 8.1E-11 67.9 5.0 82 66-152 61-149 (358)
388 COG1162 Predicted GTPases [Gen 98.1 2.5E-06 5.4E-11 71.1 4.1 63 64-129 164-229 (301)
389 PRK14722 flhF flagellar biosyn 98.1 2.7E-05 5.8E-10 67.7 10.3 128 62-190 135-295 (374)
390 COG1618 Predicted nucleotide k 98.1 3.8E-05 8.3E-10 57.9 9.5 112 63-188 4-142 (179)
391 PRK05703 flhF flagellar biosyn 98.1 0.00011 2.4E-09 65.4 14.1 117 64-190 221-371 (424)
392 KOG0447 Dynamin-like GTP bindi 98.1 9.4E-05 2E-09 65.9 13.1 80 117-202 413-507 (980)
393 cd02038 FleN-like FleN is a me 98.1 0.00013 2.8E-09 54.7 12.2 120 68-207 4-126 (139)
394 TIGR02475 CobW cobalamin biosy 98.1 6.4E-05 1.4E-09 65.0 11.7 36 116-151 93-135 (341)
395 PRK11537 putative GTP-binding 98.0 5.3E-05 1.2E-09 64.8 10.7 80 116-210 91-178 (318)
396 PF00448 SRP54: SRP54-type pro 98.0 2.8E-05 6.1E-10 61.8 8.5 66 116-191 84-155 (196)
397 KOG0099 G protein subunit Galp 98.0 6.6E-06 1.4E-10 66.6 4.6 73 116-190 202-283 (379)
398 PRK14974 cell division protein 98.0 2.8E-05 6.1E-10 66.7 8.5 66 116-191 223-294 (336)
399 KOG0705 GTPase-activating prot 98.0 1.1E-05 2.3E-10 71.6 5.8 114 61-187 27-140 (749)
400 PRK13796 GTPase YqeH; Provisio 98.0 4.4E-05 9.5E-10 66.7 9.4 90 136-264 65-157 (365)
401 PRK12727 flagellar biosynthesi 98.0 0.00028 6E-09 63.7 13.8 119 62-190 348-498 (559)
402 cd03115 SRP The signal recogni 97.9 0.00019 4.1E-09 55.9 11.2 67 115-191 82-154 (173)
403 KOG2423 Nucleolar GTPase [Gene 97.9 1E-05 2.3E-10 69.1 4.2 67 56-129 299-365 (572)
404 PF06858 NOG1: Nucleolar GTP-b 97.9 4.9E-05 1.1E-09 46.9 5.9 45 139-187 13-58 (58)
405 COG1419 FlhF Flagellar GTP-bin 97.9 0.00017 3.7E-09 62.5 10.9 118 63-190 202-352 (407)
406 PRK14721 flhF flagellar biosyn 97.9 0.0001 2.3E-09 65.0 9.6 25 63-87 190-214 (420)
407 KOG1534 Putative transcription 97.9 2.2E-05 4.9E-10 61.6 4.8 81 117-200 99-188 (273)
408 PRK01889 GTPase RsgA; Reviewed 97.9 0.00014 2.9E-09 63.4 10.2 84 137-263 110-194 (356)
409 KOG0085 G protein subunit Galp 97.8 2.4E-05 5.3E-10 62.3 4.6 75 115-191 198-281 (359)
410 KOG2484 GTPase [General functi 97.8 9.9E-06 2.1E-10 69.3 2.6 58 62-127 250-308 (435)
411 PRK11889 flhF flagellar biosyn 97.8 0.00011 2.4E-09 63.9 8.9 119 63-191 240-392 (436)
412 PF00503 G-alpha: G-protein al 97.8 1.4E-05 2.9E-10 70.6 3.3 74 114-189 234-316 (389)
413 cd03110 Fer4_NifH_child This p 97.8 0.00099 2.1E-08 52.1 12.9 66 114-189 91-156 (179)
414 PRK12726 flagellar biosynthesi 97.7 0.00035 7.5E-09 60.6 10.0 25 62-86 204-228 (407)
415 PRK14723 flhF flagellar biosyn 97.7 0.00077 1.7E-08 63.6 13.0 24 64-87 185-208 (767)
416 PF03266 NTPase_1: NTPase; In 97.7 0.00019 4.2E-09 55.6 7.6 21 66-86 1-21 (168)
417 PRK00771 signal recognition pa 97.7 0.00011 2.4E-09 65.4 6.9 23 63-85 94-116 (437)
418 KOG4273 Uncharacterized conser 97.7 0.00044 9.4E-09 55.9 9.5 131 64-203 4-137 (418)
419 COG3640 CooC CO dehydrogenase 97.7 0.00028 6E-09 56.6 8.3 46 136-189 152-198 (255)
420 KOG1533 Predicted GTPase [Gene 97.7 0.0001 2.2E-09 59.0 5.5 73 116-191 97-178 (290)
421 PRK12724 flagellar biosynthesi 97.6 0.00016 3.6E-09 63.4 7.3 23 64-86 223-245 (432)
422 KOG2743 Cobalamin synthesis pr 97.6 0.00065 1.4E-08 56.4 10.2 136 61-202 54-237 (391)
423 PF05621 TniB: Bacterial TniB 97.6 0.0014 3.1E-08 54.9 12.5 111 56-185 53-189 (302)
424 COG1162 Predicted GTPases [Gen 97.6 0.00055 1.2E-08 57.3 10.0 89 136-264 76-165 (301)
425 PRK01889 GTPase RsgA; Reviewed 97.6 8.1E-05 1.7E-09 64.8 5.0 26 63-88 194-219 (356)
426 COG0541 Ffh Signal recognition 97.6 0.00046 9.9E-09 60.2 8.6 134 33-167 67-239 (451)
427 KOG0780 Signal recognition par 97.5 0.00024 5.1E-09 60.9 6.2 55 113-168 181-241 (483)
428 TIGR00959 ffh signal recogniti 97.5 0.00031 6.8E-09 62.3 7.2 38 115-152 182-225 (428)
429 cd03111 CpaE_like This protein 97.5 0.0031 6.6E-08 44.9 11.0 97 70-185 6-106 (106)
430 PRK10867 signal recognition pa 97.5 0.0016 3.4E-08 58.0 11.2 23 63-85 99-121 (433)
431 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0021 4.5E-08 44.3 9.6 97 67-184 2-99 (99)
432 PRK06731 flhF flagellar biosyn 97.4 0.0018 3.9E-08 54.1 10.6 119 63-191 74-226 (270)
433 COG3523 IcmF Type VI protein s 97.4 0.00036 7.9E-09 68.4 7.3 117 65-190 126-270 (1188)
434 PF09547 Spore_IV_A: Stage IV 97.4 0.0039 8.4E-08 54.5 12.7 25 62-86 15-39 (492)
435 PRK06995 flhF flagellar biosyn 97.4 0.00038 8.2E-09 62.5 6.9 24 63-86 255-278 (484)
436 PRK13695 putative NTPase; Prov 97.4 0.0012 2.5E-08 51.5 8.3 22 65-86 1-22 (174)
437 PRK12723 flagellar biosynthesi 97.4 0.0036 7.8E-08 55.0 11.9 118 64-191 174-327 (388)
438 cd02042 ParA ParA and ParB of 97.4 0.0019 4.2E-08 45.5 8.6 82 67-164 2-84 (104)
439 COG0552 FtsY Signal recognitio 97.3 0.00067 1.5E-08 57.3 6.1 117 62-188 137-296 (340)
440 cd02036 MinD Bacterial cell di 97.3 0.0092 2E-07 46.3 12.3 65 117-190 64-128 (179)
441 PF13207 AAA_17: AAA domain; P 97.2 0.00029 6.4E-09 51.2 3.1 22 66-87 1-22 (121)
442 cd04178 Nucleostemin_like Nucl 97.2 0.00042 9.2E-09 53.9 4.0 44 141-191 1-45 (172)
443 cd00009 AAA The AAA+ (ATPases 97.2 0.011 2.4E-07 43.7 11.4 26 63-88 18-43 (151)
444 PRK08118 topology modulation p 97.2 0.00038 8.2E-09 53.9 3.3 23 65-87 2-24 (167)
445 PF13555 AAA_29: P-loop contai 97.0 0.00094 2E-08 42.3 3.6 22 65-86 24-45 (62)
446 COG0563 Adk Adenylate kinase a 97.0 0.00058 1.3E-08 53.4 3.1 23 65-87 1-23 (178)
447 PF13671 AAA_33: AAA domain; P 97.0 0.00058 1.3E-08 51.1 3.0 21 67-87 2-22 (143)
448 PRK07261 topology modulation p 97.0 0.00064 1.4E-08 52.9 3.2 22 66-87 2-23 (171)
449 COG1116 TauB ABC-type nitrate/ 96.9 0.00071 1.5E-08 54.9 3.0 28 62-89 27-54 (248)
450 KOG2484 GTPase [General functi 96.9 0.0012 2.7E-08 56.8 4.6 74 128-208 135-209 (435)
451 cd02019 NK Nucleoside/nucleoti 96.9 0.00087 1.9E-08 43.7 2.9 21 67-87 2-22 (69)
452 PF00005 ABC_tran: ABC transpo 96.9 0.00085 1.9E-08 49.9 3.2 27 62-88 9-35 (137)
453 KOG0781 Signal recognition par 96.9 0.0027 5.8E-08 56.0 6.5 75 114-191 465-545 (587)
454 PF13521 AAA_28: AAA domain; P 96.8 0.00066 1.4E-08 52.3 2.2 22 66-87 1-22 (163)
455 PF05673 DUF815: Protein of un 96.8 0.022 4.8E-07 46.5 10.9 32 56-87 44-75 (249)
456 smart00382 AAA ATPases associa 96.8 0.0013 2.8E-08 48.4 3.6 26 64-89 2-27 (148)
457 PHA02518 ParA-like protein; Pr 96.8 0.024 5.1E-07 45.3 11.2 66 115-188 76-145 (211)
458 PRK04195 replication factor C 96.8 0.013 2.7E-07 53.4 10.6 25 63-87 38-62 (482)
459 KOG1424 Predicted GTP-binding 96.8 0.0022 4.8E-08 57.0 5.3 61 135-202 170-231 (562)
460 COG1126 GlnQ ABC-type polar am 96.8 0.0023 5.1E-08 50.9 4.9 27 62-88 26-52 (240)
461 COG3840 ThiQ ABC-type thiamine 96.8 0.0023 4.9E-08 49.6 4.6 29 62-90 23-51 (231)
462 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.9E-08 53.1 3.4 23 64-86 3-25 (215)
463 cd01130 VirB11-like_ATPase Typ 96.8 0.0042 9.1E-08 49.0 6.1 26 63-88 24-49 (186)
464 COG1136 SalX ABC-type antimicr 96.7 0.0027 5.9E-08 51.3 4.9 27 62-88 29-55 (226)
465 PRK09270 nucleoside triphospha 96.7 0.0042 9.1E-08 50.7 6.2 26 62-87 31-56 (229)
466 TIGR00235 udk uridine kinase. 96.7 0.0013 2.8E-08 52.8 3.1 27 61-87 3-29 (207)
467 COG0194 Gmk Guanylate kinase [ 96.7 0.0023 4.9E-08 49.7 4.2 26 63-88 3-28 (191)
468 TIGR02322 phosphon_PhnN phosph 96.7 0.0016 3.5E-08 50.9 3.3 22 66-87 3-24 (179)
469 PRK14737 gmk guanylate kinase; 96.7 0.0025 5.4E-08 50.3 4.3 26 63-88 3-28 (186)
470 PRK10078 ribose 1,5-bisphospho 96.7 0.0017 3.8E-08 51.1 3.4 23 65-87 3-25 (186)
471 cd03238 ABC_UvrA The excision 96.7 0.0019 4.2E-08 50.4 3.6 25 62-86 19-43 (176)
472 PRK14738 gmk guanylate kinase; 96.6 0.0019 4E-08 51.9 3.5 26 62-87 11-36 (206)
473 cd00071 GMPK Guanosine monopho 96.6 0.0017 3.7E-08 48.5 3.0 21 67-87 2-22 (137)
474 PF13238 AAA_18: AAA domain; P 96.6 0.0018 3.8E-08 47.3 3.0 21 67-87 1-21 (129)
475 TIGR01360 aden_kin_iso1 adenyl 96.6 0.002 4.2E-08 50.7 3.5 23 64-86 3-25 (188)
476 PF00004 AAA: ATPase family as 96.6 0.0017 3.7E-08 47.6 2.9 21 67-87 1-21 (132)
477 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0021 4.5E-08 50.3 3.5 27 62-88 23-49 (177)
478 COG1161 Predicted GTPases [Gen 96.6 0.0074 1.6E-07 51.9 7.1 73 120-202 14-87 (322)
479 KOG3347 Predicted nucleotide k 96.6 0.0017 3.8E-08 48.4 2.7 25 62-86 5-29 (176)
480 PF03205 MobB: Molybdopterin g 96.6 0.002 4.3E-08 48.3 3.1 23 65-87 1-23 (140)
481 cd02037 MRP-like MRP (Multiple 96.6 0.037 8.1E-07 42.7 10.4 66 114-189 66-134 (169)
482 TIGR03263 guanyl_kin guanylate 96.6 0.0022 4.8E-08 50.1 3.5 24 65-88 2-25 (180)
483 PRK06217 hypothetical protein; 96.6 0.0021 4.7E-08 50.5 3.3 23 65-87 2-24 (183)
484 PRK08233 hypothetical protein; 96.6 0.0023 5E-08 49.9 3.5 24 64-87 3-26 (182)
485 PLN03025 replication factor C 96.6 0.027 5.9E-07 48.3 10.3 26 62-87 32-57 (319)
486 PRK03839 putative kinase; Prov 96.6 0.0021 4.6E-08 50.3 3.2 22 66-87 2-23 (180)
487 PF00437 T2SE: Type II/IV secr 96.6 0.0059 1.3E-07 51.1 6.1 26 63-88 126-151 (270)
488 COG1120 FepC ABC-type cobalami 96.5 0.0025 5.5E-08 52.5 3.6 26 62-87 26-51 (258)
489 cd03264 ABC_drug_resistance_li 96.5 0.0023 4.9E-08 51.5 3.3 24 63-87 25-48 (211)
490 TIGR00960 3a0501s02 Type II (G 96.5 0.0026 5.6E-08 51.3 3.7 27 62-88 27-53 (216)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0026 5.6E-08 51.4 3.7 27 62-88 28-54 (218)
492 PRK05480 uridine/cytidine kina 96.5 0.0023 5E-08 51.4 3.3 26 62-87 4-29 (209)
493 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0027 5.9E-08 45.0 3.2 23 63-85 14-36 (107)
494 PRK13949 shikimate kinase; Pro 96.5 0.0025 5.4E-08 49.5 3.3 22 65-86 2-23 (169)
495 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0027 5.9E-08 51.0 3.6 27 62-88 25-51 (211)
496 PF13191 AAA_16: AAA ATPase do 96.5 0.0024 5.3E-08 49.8 3.3 27 61-87 21-47 (185)
497 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0028 6E-08 50.7 3.6 27 62-88 24-50 (205)
498 TIGR01166 cbiO cobalt transpor 96.5 0.0029 6.4E-08 49.9 3.7 27 62-88 16-42 (190)
499 PRK00300 gmk guanylate kinase; 96.5 0.0029 6.2E-08 50.6 3.6 26 62-87 3-28 (205)
500 cd03261 ABC_Org_Solvent_Resist 96.5 0.0029 6.2E-08 51.8 3.7 27 62-88 24-50 (235)
No 1
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=205.99 Aligned_cols=206 Identities=59% Similarity=0.852 Sum_probs=181.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 52 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
.....+.+++.....|+++|+.+||||+|+-+|..+. .+++++++.|+..++..... .++++|.||+.+.+.
T Consensus 26 ~~~~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs-~~~TvtSiepn~a~~r~gs~-------~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 26 LFLKLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGS-HRGTVTSIEPNEATYRLGSE-------NVTLVDLPGHSRLRR 97 (238)
T ss_pred HHHHHHHHhhccCCcEEEEecCCCCceeeeeehhcCC-ccCeeeeeccceeeEeecCc-------ceEEEeCCCcHHHHH
Confidence 3344556667777899999999999999999999886 46678889888877765432 489999999999999
Q ss_pred hHHhhhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
....++. .+.+++||+|+...........+++++++..+......+|+++++||.|+..+.+.+.+++.++++++.+
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~l 177 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKL 177 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHH
Confidence 8888887 7899999999987667899999999999988765568899999999999999999999999999999999
Q ss_pred Hhhhh---ccccccccccccCCCCCCCccccccc-ceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 209 RASRS---AVSEADVTNDFTLGIPGQAFSFSQCH-NKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
+..++ +++.++..+.+.++.++.+|.|+++. .++.|.++|+++|++++|.+||++++
T Consensus 178 r~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 178 RESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTGEIDQWESWIREAL 238 (238)
T ss_pred HHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcCChHHHHHHHHHhC
Confidence 99999 56778888889999999999999998 99999999999999999999999864
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=197.73 Aligned_cols=161 Identities=19% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|+.|+|||+|+.|+.++.|.+.+.+|+ +.++......++++.+++++|||+|+++|+....+||++|++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI---GVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI---GVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhccee---eeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 45799999999999999999999999988888887 677888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
||+|||+++. .+|..+..|+.++-+... .+.|.++|+||+|+........ ..+.+.
T Consensus 85 ii~vyDiT~~-~SF~~v~~Wi~Ei~~~~~---~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa------------------- 141 (205)
T KOG0084|consen 85 IIFVYDITKQ-ESFNNVKRWIQEIDRYAS---ENVPKLLVGNKCDLTEKRVVSTEEAQEFA------------------- 141 (205)
T ss_pred EEEEEEcccH-HHhhhHHHHHHHhhhhcc---CCCCeEEEeeccccHhheecCHHHHHHHH-------------------
Confidence 9999999997 899999999999988753 6789999999999987654321 111111
Q ss_pred ccccCCCCCCCcccccccceeE-EEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+ ..+.+ |+|+|||++. +++.+..|...+
T Consensus 142 ---------------~-~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 142 ---------------D-ELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ---------------H-hcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 1 22334 9999999999 998887776543
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=195.08 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=136.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+|++++|..++|||||+-|+..+.|++...+++ +..|......+++..+++.||||+|+++|.++.+.||++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI---GaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~ 79 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI---GAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGAN 79 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccccccc---ccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCc
Confidence 356799999999999999999999999987656665 56677777777777889999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. +++..++.|+.++.++. .+++-+.+||||+||...+.+ ++.....+
T Consensus 80 AAivvYDit~~-~SF~~aK~WvkeL~~~~---~~~~vialvGNK~DL~~~R~V~~~ea~~yAe----------------- 138 (200)
T KOG0092|consen 80 AAIVVYDITDE-ESFEKAKNWVKELQRQA---SPNIVIALVGNKADLLERREVEFEEAQAYAE----------------- 138 (200)
T ss_pred EEEEEEecccH-HHHHHHHHHHHHHHhhC---CCCeEEEEecchhhhhhcccccHHHHHHHHH-----------------
Confidence 99999999997 89999999999998875 367778889999999874432 22221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
..+..|+|+|||||. +++++..|.+.+++
T Consensus 139 -------------------~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 139 -------------------SQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred -------------------hcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 245689999999999 99999999998874
No 4
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.97 E-value=3.8e-29 Score=200.39 Aligned_cols=196 Identities=45% Similarity=0.637 Sum_probs=152.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC-CEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA-AGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-d~i 143 (267)
++|+++|++|||||||+++|..+.+... .+++.++...+... ..+....+.+|||||+.+++..+..+++.+ +++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~~~~~~~~~~---~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~v 76 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSIEPNVATFILN---SEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGI 76 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEeecceEEEee---cCCCCceEEEEECCCCHHHHHHHHHHHhccCCEE
Confidence 3799999999999999999999876443 23333332222221 113346799999999999999999999998 999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc-c---cc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS-E---AD 219 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~---~~ 219 (267)
|||+|+++..+++.....++..++........++|+++|+||+|+..+.+.+.+++.++++++.++..+++.- . .+
T Consensus 77 V~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~ 156 (203)
T cd04105 77 VFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDE 156 (203)
T ss_pred EEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999864567778888888766433223689999999999999999999999999999999999887632 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQ 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~ 264 (267)
.......+..+..|.|+++..++.|+++|++.++ ++.|.+||.++
T Consensus 157 ~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~~ 203 (203)
T cd04105 157 GSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDEL 203 (203)
T ss_pred ccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhhC
Confidence 1222223456778999999999999999999988 99999999874
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=190.67 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=135.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+|++++|..++|||||+++++.+.|...+..++ +.++......+.+..+++++|||+||++|+.+.+.|+++++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI---GiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccccee---eeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 345899999999999999999999999887777666 66777777777888899999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||.++. +++++..+|+.+++..... .+.-+++|+||.||.+.+....-... +...
T Consensus 97 vaviVyDit~~-~Sfe~t~kWi~dv~~e~gs--~~viI~LVGnKtDL~dkrqvs~eEg~--~kAk--------------- 156 (221)
T KOG0094|consen 97 VAVIVYDITDR-NSFENTSKWIEDVRRERGS--DDVIIFLVGNKTDLSDKRQVSIEEGE--RKAK--------------- 156 (221)
T ss_pred EEEEEEecccc-chHHHHHHHHHHHHhccCC--CceEEEEEcccccccchhhhhHHHHH--HHHH---------------
Confidence 99999999998 8999999999999986531 34778999999999877544221111 1111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|. |.+|+.-|...+
T Consensus 157 -----------------el~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 157 -----------------ELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred -----------------HhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 345689999999999 999988776654
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=5.2e-28 Score=193.22 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=121.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+++|..|||||||++++..+.|...+.+++ +..+......+++..+.+++|||+|+++|+.++..|++++|++|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti---~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGV---GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcc---eeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 58999999999999999999988755443333 223444444556777899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...+.... +..++..+.
T Consensus 79 VfDvtd~-~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~~~~v~~--~~~~~~a~~------------------ 134 (202)
T cd04120 79 VYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREISR--QQGEKFAQQ------------------ 134 (202)
T ss_pred EEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCH--HHHHHHHHh------------------
Confidence 9999997 78999998887665432 26799999999999964332210 001110000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ |+++++||.+.+
T Consensus 135 -------------~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 135 -------------ITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -------------cCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998754
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=4.3e-28 Score=191.93 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=123.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
...||+++|..|+|||||++++..+.+.....++. +.++......+++..+.+++|||+|+++++.++..+++++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~---~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM---GIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---eeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999887654333222 223333344456777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|||+++. .+++.+..|+.++.... .+.|+++|+||+|+..... .++..+.. +
T Consensus 82 illVfD~t~~-~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a----~-------------- 138 (189)
T cd04121 82 IILVYDITNR-WSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYA----E-------------- 138 (189)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHH----H--------------
Confidence 9999999997 78999999999987642 5799999999999965432 22211111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|++|||++|. ++++++||.+.
T Consensus 139 ------------------~~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 139 ------------------RNGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred ------------------HcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 224579999999999 99999999864
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=187.98 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=135.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|||||+++.++..+.|.....+++ +.++.......++..+.+++|||+|+++|+.+...|+++|+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi---GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI---GIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE---EEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 456799999999999999999999999877777776 67788888888899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .+++.+..|+..+-++.. .+.|+++||||+|+...+.+ .+.-+.+..
T Consensus 87 gi~LvyDitne-~Sfeni~~W~~~I~e~a~---~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~----------------- 145 (207)
T KOG0078|consen 87 GILLVYDITNE-KSFENIRNWIKNIDEHAS---DDVVKILVGNKCDLEEKRQVSKERGEALAR----------------- 145 (207)
T ss_pred eeEEEEEccch-HHHHHHHHHHHHHHhhCC---CCCcEEEeeccccccccccccHHHHHHHHH-----------------
Confidence 99999999997 789999999999988753 68999999999999875433 222222221
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+|+||++|. |++.+-.|...+
T Consensus 146 ------------------e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 146 ------------------EYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ------------------HhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 346789999999999 888876665543
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.7e-27 Score=191.02 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||+++|.++.+.....++. +.++......++ +..+.+.+|||||++.++.++..+++++|++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~---~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI---GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEE
Confidence 489999999999999999999987654433333 223333333344 5668899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|+|||+++. .+++.+..|+..+...... ...++|+++|+||+|+... ...++..+..+ .
T Consensus 78 ilv~D~t~~-~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~----~------------- 139 (201)
T cd04107 78 IIVFDVTRP-STFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK----E------------- 139 (201)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH----H-------------
Confidence 999999987 7899988888776542111 1367899999999999732 22222222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++||.+++
T Consensus 140 ------------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 140 ------------------NGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 10
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=2.1e-27 Score=185.03 Aligned_cols=159 Identities=21% Similarity=0.369 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|..+.+.. ..++.. .++ .. +....+.+++|||||+++++..+..+++++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g---~~~--~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~ 78 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG---FNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 78 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcc---cce--EE--EEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456899999999999999999998766532 222221 111 11 1223478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .++.....++.+++.... ..++|+++|+||+|+......+++.+.+.
T Consensus 79 ~ii~v~D~t~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~------------------- 136 (168)
T cd04149 79 GLIFVVDSADR-DRIDEARQELHRIINDRE--MRDALLLVFANKQDLPDAMKPHEIQEKLG------------------- 136 (168)
T ss_pred EEEEEEeCCch-hhHHHHHHHHHHHhcCHh--hcCCcEEEEEECcCCccCCCHHHHHHHcC-------------------
Confidence 99999999986 678888888888876432 15689999999999975444433332221
Q ss_pred ccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
+... ...+.++++||++|+ ++++++||.+
T Consensus 137 -------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 137 -------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred -------------CCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 0000 234578999999999 9999999976
No 11
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=4.2e-27 Score=181.75 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=118.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++ ..........+++..+.+++|||||+++++.++..+++.+|+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc----chheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 58999999999999999999988764433332 22222223334555677899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++....|+..+.+... ..+.|+++|+||+|+........ ...+...
T Consensus 78 ~v~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~------------------ 133 (162)
T cd04138 78 CVFAINSR-KSFEDIHTYREQIKRVKD--SDDVPMVLVGNKCDLAARTVSSR---QGQDLAK------------------ 133 (162)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccceecHH---HHHHHHH------------------
Confidence 99999986 678888888888776432 25789999999999975321111 1111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 134 --------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 134 --------------SYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred --------------HhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 123468999999999 999999998765
No 12
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.95 E-value=3.3e-27 Score=182.80 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++..+.+..... ++..........+++..+.+++|||||++++...+..+++++|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC----CchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 599999999999999999999887644332 3222232333344666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +.......
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (163)
T cd04136 78 LVYSITSQ-SSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLEDERVVSR--EEGQALAR------------------ 134 (163)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceecH--HHHHHHHH------------------
Confidence 99999986 678888888888776432 25789999999999965332111 11111000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 --------------QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred --------------HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 112579999999999 999999998764
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=3.3e-27 Score=183.65 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++......+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI---GVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999887644333222 22233333344666688999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 80 lv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~~------------------ 135 (166)
T cd04122 80 MVYDITRR-STYNHLSSWLTDARNLT---NPNTVIFLIGNKADLEAQRDVT--YEEAKQFAD------------------ 135 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCcC--HHHHHHHHH------------------
Confidence 99999997 78899999988776542 2578999999999997543221 111111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 136 --------------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 --------------ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred --------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999998887654
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=3.9e-28 Score=182.30 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=135.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
++...||+++|++|+|||||+|++...+|...+-.++ +.++......+++..+.+++|||+|+++|.++.-.+++++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI---gadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga 82 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI---GADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA 82 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc---chhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC
Confidence 4556799999999999999999999999877666666 5567667777788889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||..+. .+++.+..|-.+++.++... +...|+||+|||+|+....+...-.+..+.
T Consensus 83 DcCvlvydv~~~-~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~---------------- 145 (210)
T KOG0394|consen 83 DCCVLVYDVNNP-KSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT---------------- 145 (210)
T ss_pred ceEEEEeecCCh-hhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH----------------
Confidence 999999999997 88999999999999876633 367899999999999764322111111111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
|....++++|||+|||.+- +++.++.+..
T Consensus 146 ---------------WC~s~gnipyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 146 ---------------WCKSKGNIPYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred ---------------HHHhcCCceeEEecccccccHHHHHHHHHH
Confidence 2222678899999999998 8777766554
No 15
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=3.3e-27 Score=183.21 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|||||||++++..+.+..... ++...........++..+.+++|||||++.+..++..+++++|+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV 77 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccC----CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence 589999999999999999999876544332 2222222223334566678899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+........ +......+
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (164)
T cd04175 78 LVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGK--EQGQNLAR------------------ 134 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcchhccEEcH--HHHHHHHH------------------
Confidence 99999886 678888888888876432 26789999999999975432211 01111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++|+++||++|. ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 135 --------------QWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --------------HhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 123479999999999 999999998865
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=4.1e-27 Score=184.31 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=119.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|.+|+|||||+.++..+.|...+.+++.. .+ .....+++..+.+++|||+|+++++.+...+++++|++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~---~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 77 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee---ee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence 48999999999999999999999886655555422 22 222344677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH--------HHHHHHHHHHHHHHhhhhcc
Q 024474 145 FVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE--------FIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--------~~~~~l~~~~~~~~~~~~~~ 215 (267)
+|||.++. .+++.+ ..|+..+.... .+.|+++|+||+||.+..... ...+...+
T Consensus 78 lvyd~~~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~------------ 140 (176)
T cd04133 78 LAFSLISR-ASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE------------ 140 (176)
T ss_pred EEEEcCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH------------
Confidence 99999997 789887 67888876542 579999999999996532100 00001111
Q ss_pred ccccccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+.+ ..+. .|+||||++|+ ++++++.+.+.
T Consensus 141 -------------------~a~-~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 141 -------------------LRK-QIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred -------------------HHH-HcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 111 1223 59999999999 99999988875
No 17
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=4.2e-27 Score=184.63 Aligned_cols=163 Identities=21% Similarity=0.368 Sum_probs=120.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|++|+|||||++++..+.+. ...+++.. . .... ....+.+++|||||+..++..+..+++++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~---~--~~~~--~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad 82 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGF---N--VETV--TYKNISFTVWDVGGQDKIRPLWRHYYTNTQ 82 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcccc---c--eEEE--EECCEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 45689999999999999999999876652 22222211 1 1111 123478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|+++. .+++....++..++..... .+.|+++|+||+|+......+++.+.+.. ..
T Consensus 83 ~ii~v~D~t~~-~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~-------------- 143 (175)
T smart00177 83 GLIFVVDSNDR-DRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDAMKAAEITEKLGL--HS-------------- 143 (175)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccCCCHHHHHHHhCc--cc--------------
Confidence 99999999987 6788888898888764321 46899999999999765444333222110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. ....+.++++||++|+ ++++++||.+++.
T Consensus 144 -------------~--~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 144 -------------I--RDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred -------------c--CCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 0 0234568899999999 9999999998764
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=4.7e-27 Score=182.57 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=119.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+...+.++. +.++.......++..+.+++|||||++++...+..+++++|+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV---GIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 589999999999999999999988754443333 22233333333555678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .+++.+..|+..+.... ....|+++|+||+|+....... .+...+..+
T Consensus 79 ~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~------------------ 134 (165)
T cd01865 79 LMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVILVGNKCDMEDERVVS--SERGRQLAD------------------ 134 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCCEEEEEECcccCcccccC--HHHHHHHHH------------------
Confidence 99999987 78888999988876532 2578999999999997543221 011111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 135 --------------QLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred --------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 19
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=4.2e-27 Score=181.80 Aligned_cols=157 Identities=20% Similarity=0.376 Sum_probs=114.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|||||||++++..+.+.. ..++... . ... +....+.+++|||||++++...+..+++++|++|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~---~--~~~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i 72 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF---N--VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCc---c--eEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 389999999999999999998776532 2222211 1 111 1223478999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
||+|+++. .++.....++..++.... ..+.|+++|+||+|+.......++.+.+. ++.
T Consensus 73 ~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~--~~~----------------- 130 (159)
T cd04150 73 FVVDSNDR-ERIGEAREELQRMLNEDE--LRDAVLLVFANKQDLPNAMSAAEVTDKLG--LHS----------------- 130 (159)
T ss_pred EEEeCCCH-HHHHHHHHHHHHHHhcHH--hcCCCEEEEEECCCCCCCCCHHHHHHHhC--ccc-----------------
Confidence 99999986 678888888888876432 14689999999999965433322222110 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. ....+.++++||++|+ ++++++||.+
T Consensus 131 ----------~--~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 131 ----------L--RNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ----------c--CCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 0 0234578899999999 9999999976
No 20
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=5.6e-27 Score=182.36 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=117.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||+++++.+.+.....++.... +.......++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAI 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeE---EEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEE
Confidence 489999999999999999999877654444433221 21111222455678999999999998888889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.... .++|+++|+||+|+.......+.. + +..
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piiiv~nK~Dl~~~~~~~~~~----~-~~~----------------- 130 (166)
T cd00877 78 IMFDVTSR-VTYKNVPNWHRDLVRVC----GNIPIVLCGNKVDIKDRKVKAKQI----T-FHR----------------- 130 (166)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhcccccCCHHHH----H-HHH-----------------
Confidence 99999987 78888888988887653 379999999999997332211110 0 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ ++++++||.+.+
T Consensus 131 --------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 131 --------------KKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred --------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 234579999999999 999999998764
No 21
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=6.4e-27 Score=186.10 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=120.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|+.|||||||++++..+.+...+.+++.. .+. ....+++..+.+++|||+|+++++.++..+++++|++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~---~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD---NYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe---eeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 469999999999999999999998876555444421 222 2233467778999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
|+|||+++. .+++.+. .|+..+... ..+.|+++|+||.||.......+ .+.+ . ....++..+..
T Consensus 79 ilvydit~~-~Sf~~~~~~w~~~i~~~----~~~~piilvgNK~DL~~~~~~~~---~~~~----~--~~~~v~~~~~~- 143 (191)
T cd01875 79 IICFSIASP-SSYENVRHKWHPEVCHH----CPNVPILLVGTKKDLRNDADTLK---KLKE----Q--GQAPITPQQGG- 143 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEeChhhhcChhhHH---HHhh----c--cCCCCCHHHHH-
Confidence 999999997 7888886 466655543 25799999999999965432111 0000 0 00000000000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+.+.|+++||++|+ +++++++|.+.+
T Consensus 144 -----------~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 144 -----------ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred -----------HHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111223579999999999 999999998753
No 22
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=9.3e-27 Score=180.23 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=119.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
++|+++|++|+|||||++++.++.+.....++.. .++......+++..+.+++|||+|++++...+..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG---VDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIF 77 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEE
Confidence 4899999999999999999999887544433332 2232233334555678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+..|+.++.... ..+.|+++|+||.|+....... +....+.+
T Consensus 78 ~v~d~~~~-~sf~~~~~~~~~~~~~~---~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-------------------- 133 (161)
T cd04117 78 LVYDISSE-RSYQHIMKWVSDVDEYA---PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-------------------- 133 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCHHHHHHHHH--------------------
Confidence 99999987 78999999988876542 2578999999999997544321 11111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+..|+++||++|. ++++++||.+.
T Consensus 134 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 134 ---------------EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 122468999999999 99999999864
No 23
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=5.2e-27 Score=183.20 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=120.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++.++.+...+.++.. .++......+++..+.+++|||||++++...+..+++++|++++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG---VDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence 799999999999999999999887655444432 23333333445666889999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .++.....|+..+.+... ....|+++|+||+|+..........+.......
T Consensus 79 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~------------------- 136 (170)
T cd04108 79 VFDLTDV-ASLEHTRQWLEDALKEND--PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA------------------- 136 (170)
T ss_pred EEECcCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEChhcCccccccccHHHHHHHHH-------------------
Confidence 9999886 678888899988876432 245789999999998644321111111111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 137 -------------~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 137 -------------EMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999987753
No 24
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.2e-27 Score=184.36 Aligned_cols=164 Identities=22% Similarity=0.381 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.+||+++|++|||||||++++..+.+.. ..++. + ..... ++...+.+++|||||++.++..+..+++++
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~----~-~~~~~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~a 85 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTI----G-FNVET--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNT 85 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCcc----c-cceEE--EEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 4566899999999999999999998776532 22222 1 11111 223447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. .++.....++.+++.... ..+.|+++|+||.|+.......++.+.+.. ..
T Consensus 86 d~iI~v~D~t~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~l~~--~~------------- 147 (182)
T PTZ00133 86 NGLIFVVDSNDR-ERIGDAREELERMLSEDE--LRDAVLLVFANKQDLPNAMSTTEVTEKLGL--HS------------- 147 (182)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCCCCCCHHHHHHHhCC--Cc-------------
Confidence 999999999986 678888888888765422 146899999999999765444332221110 00
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. ..++.++++||++|+ ++++++||.+.+.
T Consensus 148 --------------~~--~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 --------------VR--QRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred --------------cc--CCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 00 234567899999999 9999999998754
No 25
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=8.9e-27 Score=181.38 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=121.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||++.+...+..+++.+|++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI---GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc---cceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 4699999999999999999999988755444333 2233333334456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... .+.......
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~----------------- 136 (167)
T cd01867 80 ILVYDITDE-KSFENIRNWMRNIEEHA---SEDVERMLVGNKCDMEEKRVVS--KEEGEALAD----------------- 136 (167)
T ss_pred EEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCC--HHHHHHHHH-----------------
Confidence 999999987 78889999988887642 3678999999999997543211 011111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++++++|.+.+
T Consensus 137 ---------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 ---------------EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ---------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 26
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=6.2e-27 Score=184.52 Aligned_cols=162 Identities=22% Similarity=0.396 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..||+++|.+|||||||++++..+.+.. ..++. + ..... ++...+.+++|||||++.++.++..+++++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~----g-~~~~~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~ 86 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----G-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 86 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCc----c-eeEEE--EEECCEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456899999999999999999998766532 22222 1 11111 2234478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|+++. +++.....++.+++.... ..+.|+++|+||+|+......+++.+.+.
T Consensus 87 ~iI~V~D~s~~-~s~~~~~~~l~~~l~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~l~------------------- 144 (181)
T PLN00223 87 GLIFVVDSNDR-DRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLG------------------- 144 (181)
T ss_pred EEEEEEeCCcH-HHHHHHHHHHHHHhcCHh--hCCCCEEEEEECCCCCCCCCHHHHHHHhC-------------------
Confidence 99999999987 678888888888775432 25789999999999976654433332221
Q ss_pred ccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+... ...+.++++||++|+ ++++++||.+.+.
T Consensus 145 -------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 -------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred -------------ccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 0000 234467799999999 9999999988753
No 27
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=1.1e-26 Score=179.95 Aligned_cols=162 Identities=14% Similarity=0.234 Sum_probs=120.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.++.+... ..++..........+++..+.+++|||||+.++..++..+++.+|++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD----YDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGF 77 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc----cCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence 46999999999999999999998765332 23333322233334466667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~--~~~~~~~~----------------- 135 (164)
T cd04145 78 LLVFSVTDR-GSFEEVDKFHTQILRVKD--RDEFPMILVGNKADLEHQRKVSR--EEGQELAR----------------- 135 (164)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCCEEEEeeCccccccceecH--HHHHHHHH-----------------
Confidence 999999987 678888888888776422 25789999999999975432110 11111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 136 ---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 136 ---------------KLKIPYIETSAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred ---------------HcCCcEEEeeCCCCCCHHHHHHHHHHhhC
Confidence 123468999999999 9999999988753
No 28
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.2e-26 Score=180.24 Aligned_cols=163 Identities=16% Similarity=0.252 Sum_probs=120.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||++++..+.+.....++. +.++......+++..+.+++|||||++.+...+..+++.+|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 78 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI---GVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANG 78 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc---ceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 34799999999999999999999877644332222 222333334445555789999999999999889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+......+.
T Consensus 79 ~llv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~--------------- 137 (165)
T cd01864 79 AIIAYDITRR-SSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEEQREVL--FEEACTLAEK--------------- 137 (165)
T ss_pred EEEEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEECcccccccccC--HHHHHHHHHH---------------
Confidence 9999999987 67888888988887642 3678999999999997543211 0111111110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|. +++++++|.+.+
T Consensus 138 ----------------~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 138 ----------------NGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred ----------------cCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 122468999999999 999999998754
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=8.5e-27 Score=183.83 Aligned_cols=164 Identities=18% Similarity=0.215 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|+.|+|||||++++.++.+...+.++.. .++......+++..+.+++|||+|++.+...+..+++++|+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g---~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii 77 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG---VNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAIL 77 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc---eEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence 4899999999999999999999887654444432 2333333445666789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+.++.... ....| ++|+||+|+........... +.+....+
T Consensus 78 lv~D~t~~-~s~~~i~~~~~~~~~~~---~~~~p-ilVgnK~Dl~~~~~~~~~~~-~~~~~~~~---------------- 135 (182)
T cd04128 78 FMFDLTRK-STLNSIKEWYRQARGFN---KTAIP-ILVGTKYDLFADLPPEEQEE-ITKQARKY---------------- 135 (182)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCE-EEEEEchhccccccchhhhh-hHHHHHHH----------------
Confidence 99999997 78999999998887642 24466 68899999964322111111 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+ ..+..++++||++|+ +++++++|.+.+
T Consensus 136 -----------a~-~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 136 -----------AK-AMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred -----------HH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 123578999999999 999999998753
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=7.1e-27 Score=182.78 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=119.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|.+|+|||||++++..+.+.....++. .........+++..+.+++|||||+.+++.++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ 77 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI----EDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGF 77 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc----cceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEE
Confidence 3699999999999999999999988754433333 222222234466667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|||+++. .+++.+..|...+.+... ..++|+++|+||+|+........ +...+..+
T Consensus 78 ilv~d~~~~-~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~~~~v~~--~~~~~~a~----------------- 135 (172)
T cd04141 78 IICYSVTDR-HSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLESQRQVTT--EEGRNLAR----------------- 135 (172)
T ss_pred EEEEECCch-hHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhhcCccCH--HHHHHHHH-----------------
Confidence 999999997 788888877665544321 25799999999999865432211 01111001
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|. ++++++||...+
T Consensus 136 ---------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 136 ---------------EFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---------------HhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999998764
No 31
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=6.5e-27 Score=189.74 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|||||||++++..+.+.....+++.. ++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 87 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce---eEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence 46679999999999999999999988775544443322 222222223445579999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .+++.+..|+..+.... .++|+++|+||+|+....... +.+ + +..
T Consensus 88 ~~ilvfD~~~~-~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~-------------- 143 (219)
T PLN03071 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA---KQV-T-FHR-------------- 143 (219)
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCH---HHH-H-HHH--------------
Confidence 99999999997 78999999998887642 579999999999986432111 111 0 000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|. ++++++||.+.+
T Consensus 144 -----------------~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 144 -----------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred -----------------hcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 223578999999999 999999998765
No 32
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=9.1e-27 Score=180.62 Aligned_cols=161 Identities=14% Similarity=0.222 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+.....++ ..+........++..+.+.+|||||++++...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i 76 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT----IEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc----hhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEE
Confidence 48999999999999999999988765433222 22222233334566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++.+..|...+.+... ..+.|+++|+||+|+........ +......+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~~~~~~~--~~~~~~~~------------------ 133 (164)
T smart00173 77 LVYSITDR-QSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLESERVVST--EEGKELAR------------------ 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceEcH--HHHHHHHH------------------
Confidence 99999987 678888888777765432 25789999999999975432110 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+.+++++||++|+ +++++++|.+.++
T Consensus 134 --------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 --------------QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred --------------HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 112578999999999 9999999998765
No 33
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=7.9e-27 Score=180.83 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=120.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++..+.+.....++ ...+......+++..+.+++|||||++++..++..+++++|+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPT----IEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----hhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 58999999999999999999998775443332 22333334444666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .++..+..|+..+..... ..++|+++|+||+|+........ ....+. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~~~~~~~~~~~~~~---~----------------- 134 (163)
T cd04176 78 VVYSLVNQ-QTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLESEREVSSAEGRALA---E----------------- 134 (163)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcCccCHHHHHHHH---H-----------------
Confidence 99999997 678888888888776432 26799999999999864332111 111111 0
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|. ++++++||.+.+
T Consensus 135 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 135 ---------------EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ---------------HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 112478999999999 999999998865
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=1e-26 Score=180.81 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||++++...+..+++.+|++|
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 699999999999999999999887654333322 22333333444566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. +++..+..|+..+.... ..+.|+++|+||+|+........ +.......
T Consensus 80 ~v~d~~~~-~s~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~--~~~~~~~~------------------ 135 (166)
T cd01869 80 IVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTDKRVVDY--SEAQEFAD------------------ 135 (166)
T ss_pred EEEECcCH-HHHHhHHHHHHHHHHhC---CCCCcEEEEEEChhcccccCCCH--HHHHHHHH------------------
Confidence 99999987 68999999988876542 25789999999999865432210 11111011
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 136 --------------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 136 --------------ELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred --------------HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
No 35
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-27 Score=177.56 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=129.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++++|+.|+|||+|+.+++...|......|+ +.++......++++.+++++|||+|++.|++....||+.+.+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti---Gvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI---GVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccccee---eeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 45799999999999999999999999876665555 556667777788999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|||++.. +++.++..||.++.++. ..+..+++++||+||...+.+.. --+.
T Consensus 82 alLVydit~r-~sF~hL~~wL~D~rq~~---~~NmvImLiGNKsDL~~rR~Vs~EEGea--------------------- 136 (216)
T KOG0098|consen 82 ALLVYDITRR-ESFNHLTSWLEDARQHS---NENMVIMLIGNKSDLEARREVSKEEGEA--------------------- 136 (216)
T ss_pred eEEEEEccch-hhHHHHHHHHHHHHHhc---CCCcEEEEEcchhhhhccccccHHHHHH---------------------
Confidence 9999999998 89999999999999874 37889999999999987654321 1111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
|.. .....|.++||++++ +++.+.-.
T Consensus 137 -------------FA~-ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 137 -------------FAR-EHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred -------------HHH-HcCceeehhhhhhhhhHHHHHHHH
Confidence 111 345678899999999 88876443
No 36
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=2e-26 Score=179.85 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=121.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
...||+++|++|+|||||++++.++.+.....++. +.++.......++..+.+++|||||+++++.++..+++.+|+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI---GVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce---eeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 45799999999999999999999887754433332 222222333446667889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||+++. .+++.+..|..++....... ..++|+++|+||+|+.... ..++..+..+ .
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 142 (170)
T cd04116 81 CLLTFAVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----E------------- 142 (170)
T ss_pred EEEEEECCCH-HHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----H-------------
Confidence 9999999987 67888888888776643211 2578999999999986322 2222222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +.++++++.+.+
T Consensus 143 ------------------~~~~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 143 ------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred ------------------CCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 122368999999999 999999988653
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=1.6e-26 Score=179.57 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=120.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||+++++++.+.....++. +.++.......++..+.+++|||||++.+...+..+++.+|++|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI---GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL 77 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999988755433333 22233333344566689999999999999989999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCC--CCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTV--VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+++. .+++....|+..+...... ...+.|+++|+||+|+.... ..++..+...
T Consensus 78 lv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 138 (168)
T cd04119 78 LVYDVTDR-QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE------------------ 138 (168)
T ss_pred EEEECCCH-HHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH------------------
Confidence 99999987 6788888898888764320 01468999999999996422 2222111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 139 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 ------------------SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 122568999999999 999999998764
No 38
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.3e-26 Score=179.25 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|+++|++|||||||+++|.+..+ .....++. + +.... .....+.+++|||||+.++...+..+++.+|++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~----g-~~~~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 73 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTV----G-FNVES--FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGII 73 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcc----c-cceEE--EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEE
Confidence 589999999999999999998753 22222222 2 11111 1223468999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..++........++|+++|+||+|+.......++.+.+..
T Consensus 74 ~v~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~--------------------- 131 (162)
T cd04157 74 FVIDSSDR-LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL--------------------- 131 (162)
T ss_pred EEEeCCcH-HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCC---------------------
Confidence 99999986 56777778887776643222357999999999999765443322221110
Q ss_pred cCCCCCCCccccc-ccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 225 TLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.. ....+.++++||++|+ ++++++||.+
T Consensus 132 -----------~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 132 -----------ENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -----------ccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 00 0234578999999999 9999999975
No 39
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=2.1e-26 Score=178.92 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=116.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++++.+.....++... ........+...+.+++|||||++++..+...+++.+|++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED----TYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh----eEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 58999999999999999999998875544443321 11222223445578999999999999998889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||+++. .+++.+..|+..+.........+.|+++|+||+|+........ +.......
T Consensus 78 lv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~------------------ 136 (165)
T cd04140 78 LVYSVTSK-QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS--NEGAACAT------------------ 136 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH--HHHHHHHH------------------
Confidence 99999987 6788887776655442111125789999999999965332211 00010000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ ++++++||.+.-
T Consensus 137 --------------~~~~~~~e~SA~~g~~v~~~f~~l~~~~ 164 (165)
T cd04140 137 --------------EWNCAFMETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred --------------HhCCcEEEeecCCCCCHHHHHHHHHhcc
Confidence 123478999999999 999999998753
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=2e-26 Score=184.44 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||++++.+..+...+.++. +.++......+++..+.+.+|||||++.++..+..+++.+|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI---GVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc---cceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 46799999999999999999999987654333333 223333333345666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++.+..|+..+.... ...|+++|+||+|+........ +...+...
T Consensus 82 iilv~D~~~~-~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~--~~~~~~~~---------------- 138 (199)
T cd04110 82 VIVVYDVTNG-ESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVET--EDAYKFAG---------------- 138 (199)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCH--HHHHHHHH----------------
Confidence 9999999987 78888999988876542 5789999999999975433210 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. ++++++||.+.+
T Consensus 139 ----------------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 139 ----------------QMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ----------------HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 41
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=5.1e-27 Score=169.97 Aligned_cols=158 Identities=19% Similarity=0.324 Sum_probs=133.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
++.+|+|++|+|||||+.++..+.|...+++++ +.++.+....++|..++++||||+|++.|+.+...|+++.++++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTi---GvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI---GVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEe---eeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 367899999999999999999999988888877 77888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .++.....|+.++..++ ...|-++|+||.|....+.+..-. ...
T Consensus 86 vVYDVTn~-ESF~Nv~rWLeei~~nc----dsv~~vLVGNK~d~~~RrvV~t~d--Ar~--------------------- 137 (198)
T KOG0079|consen 86 VVYDVTNG-ESFNNVKRWLEEIRNNC----DSVPKVLVGNKNDDPERRVVDTED--ARA--------------------- 137 (198)
T ss_pred EEEECcch-hhhHhHHHHHHHHHhcC----ccccceecccCCCCccceeeehHH--HHH---------------------
Confidence 99999998 78999999999999876 478889999999997665432111 000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|.. ..++++||+||+..+ +++.+..|.+.
T Consensus 138 ----------~A~-~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 138 ----------FAL-QMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ----------HHH-hcCchheehhhhhcccchHHHHHHHHH
Confidence 110 456789999999999 99988877654
No 42
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=2e-26 Score=186.60 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||+++|.++.+...+.++.. .++......++ +..+.+++|||||+..+...+..+++.+|++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~---~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~i 77 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG---LDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAV 77 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee---EEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEE
Confidence 4899999999999999999998877554433332 22322233332 3457899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|||+++. .+++.+..|+..+.........+.|+++|+||+|+...+... .+......+
T Consensus 78 ilV~D~t~~-~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~~----------------- 137 (215)
T cd04109 78 FLVYDVTNS-QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK--DDKHARFAQ----------------- 137 (215)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC--HHHHHHHHH-----------------
Confidence 999999987 788888888888776432112457899999999996433211 111111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 138 ---------------~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 138 ---------------ANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred ---------------HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 43
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=182.60 Aligned_cols=162 Identities=13% Similarity=0.175 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||++++.++.+.....++. .........+++..+.+++|||||++++..++..+++.+|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ 79 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----EDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQG 79 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----hhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence 46799999999999999999999987654333322 22222233345666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 80 iilv~D~s~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~~---------------- 138 (189)
T PTZ00369 80 FLCVYSITSR-SSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDSERQVST--GEGQELAK---------------- 138 (189)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCH--HHHHHHHH----------------
Confidence 9999999997 678888888888776422 25789999999999865432211 01111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ ++++++||.+.+
T Consensus 139 ----------------~~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 ----------------SFGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred ----------------HhCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998764
No 44
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=2.4e-26 Score=179.33 Aligned_cols=158 Identities=23% Similarity=0.363 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|||||||++++.+..+.. ..++... .... ++...+.+++|||||+.+++..+..+++.+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~-----~~~~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 72 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGF-----NVET--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVF 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCce-----eEEE--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEE
Confidence 68999999999999999999876532 2222211 1111 22344789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....|+.++++.... .+.|+++|+||+|+......++..+.+.
T Consensus 73 V~D~s~~-~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~----------------------- 126 (169)
T cd04158 73 VVDSSHR-DRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAGALSVEEMTELLS----------------------- 126 (169)
T ss_pred EEeCCcH-HHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCcccCCCHHHHHHHhC-----------------------
Confidence 9999987 6788999999998865321 4689999999999975544443332221
Q ss_pred CCCCCCCccccc--ccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 226 LGIPGQAFSFSQ--CHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
... ....+.++++||++|. ++++++||.+.+.
T Consensus 127 ---------~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 127 ---------LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred ---------CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 000 0224578899999999 9999999987653
No 45
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=1.5e-26 Score=183.90 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||+++|..+.+.....++ ..........+++..+.+++|||||++++...+..+++.+|++|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT----IEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL 76 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc----hHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence 5899999999999999999988765433322 222222223345666789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++.+..|+..+.........+.|+++|+||+|+........ +...+...
T Consensus 77 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~~------------------- 134 (190)
T cd04144 77 VYSITSR-STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEGAALAR------------------- 134 (190)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHHHHHHH-------------------
Confidence 9999987 6788888888777653221125789999999999965332211 01111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ ++++++||.+.+
T Consensus 135 -------------~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 135 -------------RLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred -------------HhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
No 46
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=6.2e-27 Score=171.84 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=128.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|.+|+|||||+-++..+.|.+...+++ +.++.+....++++.+++.+|||+|+++|+.+.+.|++++.+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI---GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI---GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCcee---eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34799999999999999999999998876655556 678899999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||++.. +++..+..|+.++-...- ..++-.++|+||+|....+.+.. ++=-
T Consensus 87 iIlVYDVT~R-dtf~kLd~W~~Eld~Yst--n~diikmlVgNKiDkes~R~V~r--eEG~-------------------- 141 (209)
T KOG0080|consen 87 IILVYDVTSR-DTFVKLDIWLKELDLYST--NPDIIKMLVGNKIDKESERVVDR--EEGL-------------------- 141 (209)
T ss_pred eEEEEEccch-hhHHhHHHHHHHHHhhcC--CccHhHhhhcccccchhcccccH--HHHH--------------------
Confidence 9999999987 789999999988866432 36777899999999764332211 0000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.|.. ....-|+||||++.+ +..-++-|.++
T Consensus 142 -----------kfAr-~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 142 -----------KFAR-KHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred -----------HHHH-hhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 0111 345579999999999 76666655554
No 47
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=4.4e-26 Score=178.64 Aligned_cols=161 Identities=31% Similarity=0.472 Sum_probs=127.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..+|+++|+.||||||+++++..+.... ..|+.+ +....... ..+.+.+||.+|+..+++.|+.|++.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g-~~~~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIG-FNIEEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESS-EEEEEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccc-cccceeee--CcEEEEEEeccccccccccceeecccc
Confidence 4788999999999999999999998765322 222222 22222222 346899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|||+|+++. +.+.+....+.+++..... .++|+++++||+|+......+++.+.+.-
T Consensus 83 ~~iIfVvDssd~-~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~~~~~~~i~~~l~l----------------- 142 (175)
T PF00025_consen 83 DGIIFVVDSSDP-ERLQEAKEELKELLNDPEL--KDIPILILANKQDLPDAMSEEEIKEYLGL----------------- 142 (175)
T ss_dssp SEEEEEEETTGG-GGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTTSSTHHHHHHHTTG-----------------
T ss_pred ceeEEEEecccc-eeecccccchhhhcchhhc--ccceEEEEeccccccCcchhhHHHhhhhh-----------------
Confidence 999999999986 6789999999999986543 68999999999999887777665544331
Q ss_pred cccccCCCCCCCcccccc--cceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQC--HNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+ ...+.+++|||.+|+ +.+.++||.+.
T Consensus 143 ---------------~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 143 ---------------EKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ---------------GGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ---------------hhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 111 467789999999999 99999999875
No 48
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=3.8e-26 Score=176.53 Aligned_cols=159 Identities=15% Similarity=0.218 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.+..+.....++. +.++.......++..+.+++|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii 77 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATI---GIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCce---eeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999887643222211 22333333334555578999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|++++ .+++.+..|+..+.... ..+.|+++|+||+|+..... ..+....+. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~D~~~~~~~~~~~~~~~~---~----------------- 133 (161)
T cd01861 78 VVYDITNR-QSFDNTDKWIDDVRDER---GNDVIIVLVGNKTDLSDKRQVSTEEGEKKA---K----------------- 133 (161)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCEEEEEEEChhccccCccCHHHHHHHH---H-----------------
Confidence 99999987 67888889988877642 23699999999999953321 111111111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 134 ---------------ELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ---------------HhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 123578999999999 999999998764
No 49
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=4e-26 Score=178.92 Aligned_cols=160 Identities=22% Similarity=0.354 Sum_probs=117.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++..+.+.. ..++...+.. .. ......+.+|||||+..+...+..+++++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-----~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 84 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-----EI--VYKNIRFLMWDIGGQESLRSSWNTYYTNTD 84 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-----EE--EECCeEEEEEECCCCHHHHHHHHHHhhcCC
Confidence 457899999999999999999999877543 2222222111 11 122468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.+++.... ..++|+++++||+|+......+++.+.+.. ..
T Consensus 85 ~vi~V~D~s~~-~~~~~~~~~l~~~~~~~~--~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~--~~-------------- 145 (174)
T cd04153 85 AVILVIDSTDR-ERLPLTKEELYKMLAHED--LRKAVLLVLANKQDLKGAMTPAEISESLGL--TS-------------- 145 (174)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhchh--hcCCCEEEEEECCCCCCCCCHHHHHHHhCc--cc--------------
Confidence 99999999986 567777788888876432 156899999999999764444333222110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.. ..++.++++||++|+ ++++++||..
T Consensus 146 -------------~~--~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 146 -------------IR--DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred -------------cc--CCceEEEecccCCCCCHHHHHHHHhc
Confidence 00 234578999999999 9999999975
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.94 E-value=3.2e-26 Score=177.80 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=120.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||++++.++.+.....++. +.++.......++..+.+++|||||+..+...+..+++.++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI---GVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA 79 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEE
Confidence 3699999999999999999999887643333222 2233333333456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~----------------- 136 (165)
T cd01868 80 LLVYDITKK-QTFENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAE----------------- 136 (165)
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccccCC--HHHHHHHHH-----------------
Confidence 999999986 67888889988877653 2468999999999987543211 111111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+++
T Consensus 137 ---------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 137 ---------------KNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ---------------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 123578999999999 999999998765
No 51
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=2.7e-26 Score=180.76 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=119.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecc-------cCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-------STKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
..||+++|++|||||||++++.++.+.....++............. ...+..+.+.+|||||++++...+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4699999999999999999999988765544433211111111110 012345789999999999999999999
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++++|++++|||+++. .++..+..|+..+..... ..+.|+++|+||+|+........ +...+..+
T Consensus 84 ~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~~~~v~~--~~~~~~~~---------- 148 (180)
T cd04127 84 FRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLEDQRQVSE--EQAKALAD---------- 148 (180)
T ss_pred hCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchhcCccCH--HHHHHHHH----------
Confidence 9999999999999986 789999999988766432 25789999999999975432211 11111111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 149 ----------------------~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 149 ----------------------KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ----------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998653
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=4.1e-26 Score=176.42 Aligned_cols=158 Identities=21% Similarity=0.273 Sum_probs=118.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|.++.+.....++.. ..+......+++..+.+++|||||++++...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG---VEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 4899999999999999999998876443333221 2222222333556678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++......
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------------------- 133 (161)
T cd04113 78 LVYDITNR-TSFEALPTWLSDARALA---SPNIVVILVGNKSDLADQREVTFLEASRFAQ-------------------- 133 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcchhccCCHHHHHHHHH--------------------
Confidence 99999997 67888888888775432 36889999999999975322 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++++.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 134 ----------------ENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 122579999999999 999999998754
No 53
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=3.1e-26 Score=179.35 Aligned_cols=161 Identities=22% Similarity=0.340 Sum_probs=117.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||++++.+..+. . +.++.+ +......++ .+.+++|||||+..++..+..+++.+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~----~~~t~g-~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-T----ISPTLG-FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-C----cCCccc-cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 456789999999999999999999987542 1 222221 112222222 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.++. .
T Consensus 83 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~------------ 143 (173)
T cd04154 83 DALIWVVDSSDR-LRLDDCKRELKELLQEER--LAGATLLILANKQDLPGALSEEEIREALEL----D------------ 143 (173)
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCCCHHHHHHHhCc----c------------
Confidence 999999999986 578888888888765322 267999999999999765443333222210 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
......++++++||++|+ ++++++||.+
T Consensus 144 ---------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 144 ---------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ---------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 000235689999999999 9999999864
No 54
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=4.1e-26 Score=179.71 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||++++..+.+...+.+++.. .+ .....+++..+.+++|||+|+++|..+...+++++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~---~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad 78 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE---NY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 78 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee---ee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCC
Confidence 35679999999999999999999998876655444422 22 223345677789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
++|+|||+++. .+++.+ ..|+..+.... .+.|+++|+||+||..
T Consensus 79 ~~ilvyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 79 AVLICFDISRP-ETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 99999999997 788887 68887776542 5789999999999854
No 55
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=5.2e-26 Score=176.04 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=115.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|||||||++++..+.+.....++... +.......+++..+.+++|||||++.+..++..+++.+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYAL---TLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceee---EEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence 48999999999999999999988775443333322 122222334566688999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..+... ..+.|+++|+||+|+... . .+.......
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~----~~~~p~ivv~nK~Dl~~~--~---~~~~~~~~~------------------ 129 (161)
T cd04124 78 LVFDVTRK-ITYKNLSKWYEELREY----RPEIPCIVVANKIDLDPS--V---TQKKFNFAE------------------ 129 (161)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHh----CCCCcEEEEEECccCchh--H---HHHHHHHHH------------------
Confidence 99999986 6778888888877653 257899999999998421 1 111110000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|. ++++++.+.+.+
T Consensus 130 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 130 --------------KHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred --------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999998887653
No 56
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=4.1e-26 Score=179.26 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=117.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+...+.+++. ..+ .....+++..+.+++|||+|++.+......+++++|++|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~---~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF---ENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE---EEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 5899999999999999999999887655444432 222 223344677789999999999999998999999999999
Q ss_pred EEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+ ..|+..+.+.. .+.|+++|+||+||..... ...+ + ... ....++.++..
T Consensus 78 lvfdit~~-~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~--~~~~-~----~~~--~~~~v~~~e~~-- 141 (178)
T cd04131 78 ICFDISRP-ETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLS--TLME-L----SHQ--RQAPVSYEQGC-- 141 (178)
T ss_pred EEEECCCh-hhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChh--HHHH-H----Hhc--CCCCCCHHHHH--
Confidence 99999987 788885 78887776642 5789999999999964211 1100 0 000 00001111100
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIRE 263 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~ 263 (267)
.+....+...|+|+||++|+ ++++++.+.+
T Consensus 142 ----------~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 ----------AIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred ----------HHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 01111222379999999996 9999887765
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=3.1e-26 Score=181.93 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.++.+...+.++. ..........++..+.+++|||+|++++...+..+++.+|+++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~----~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i 76 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV----FENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM 76 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcc----eeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEE
Confidence 389999999999999999999988755433332 2122222333566678999999999999888889999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .+++.+. .|+..+... ..+.|+++|+||+|+............... ..++.++.
T Consensus 77 lv~dv~~~-~sf~~~~~~~~~~i~~~----~~~~piilvgNK~Dl~~~~~~~~~~~~~~~---------~~v~~~~~--- 139 (189)
T cd04134 77 LCFSVDSP-DSLENVESKWLGEIREH----CPGVKLVLVALKCDLREARNERDDLQRYGK---------HTISYEEG--- 139 (189)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccChhhHHHHhhccC---------CCCCHHHH---
Confidence 99999997 6787775 577777653 257899999999999765433222111000 00000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+.+.|+++||++|+ ++++++||.+.+
T Consensus 140 ---------~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 140 ---------LAVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred ---------HHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 001111233679999999999 999999998653
No 58
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=5.8e-26 Score=176.83 Aligned_cols=159 Identities=21% Similarity=0.317 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|||||||++++.+. +...+.++...+. ... ....+.+++|||||+..++..+..|++++|++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-----~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~ 72 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-----TKL--RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-----EEE--EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999999999976 3333333332221 111 1234689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .++.....|+..++.... ..++|+++|+||+|+.......++.+.+. ++.+
T Consensus 73 V~D~s~~-~s~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~----------------- 130 (167)
T cd04161 73 VVDSSDD-DRVQEVKEILRELLQHPR--VSGKPILVLANKQDKKNALLGADVIEYLS--LEKL----------------- 130 (167)
T ss_pred EEECCch-hHHHHHHHHHHHHHcCcc--ccCCcEEEEEeCCCCcCCCCHHHHHHhcC--cccc-----------------
Confidence 9999987 578888999998886532 25789999999999987766555443321 0000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccC------c-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~ 263 (267)
.++....+.+++|||++| + +.+.++||.+
T Consensus 131 ---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 131 ---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 011133567899999998 6 9999999975
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=4.4e-26 Score=178.00 Aligned_cols=163 Identities=18% Similarity=0.297 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-hhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||++++..+.+.....++. +.++......+++..+.+++|||||+++++ ..+..+++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI---GVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce---eEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 4699999999999999999999887654433332 122333333445666889999999999886 468889999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||++++ .++..+..|+..+..... ..++|+++|+||+|+...... ....+.+.+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (170)
T cd04115 79 VVFVYDVTNM-ASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQIQVPTDLAQRFAD------------------ 137 (170)
T ss_pred EEEEEECCCH-HHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhhcCCCHHHHHHHHH------------------
Confidence 9999999987 788889898887776432 267999999999998654321 111111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeecc---Cc-chhHHHHHHhhcCC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLT---GE-ISQVEQFIREQVKP 267 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---g~-i~~l~~~l~~~~~p 267 (267)
..++.|+++||++ ++ +++++.+|.+.+++
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~~ 170 (170)
T cd04115 138 -----------------AHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred -----------------HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhhC
Confidence 2235799999999 66 99999999887764
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=6.6e-26 Score=175.36 Aligned_cols=158 Identities=11% Similarity=0.183 Sum_probs=116.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC--CccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK--GKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.||+++|++|+|||||++++.++.+.....++.. .++......+. +..+.+++|||||++++...+..+++.+|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 77 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG---VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE---EEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence 3899999999999999999999876543333332 22222222222 455789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++..+..|+..+.... .++|+++|+||+|+........ +...+..+
T Consensus 78 ~v~v~d~~~~-~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~~---------------- 134 (162)
T cd04106 78 CILVFSTTDR-ESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITN--EEAEALAK---------------- 134 (162)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCH--HHHHHHHH----------------
Confidence 9999999987 67888888888776532 5799999999999975432211 11111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|. ++++++||.+.
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 135 ----------------RLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ----------------HcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 123478999999999 99999999865
No 61
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=4.8e-26 Score=178.55 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++..+.+...+.+++. ..+.. ...+++..+.+++|||+|++++...+..+++.+|++|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~---~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~i 77 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 77 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eeeEE-EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEE
Confidence 5899999999999999999999887555444442 12221 2234566688999999999999988889999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||.++. .+++.+. .|+..+... ..+.|+++|+||+|+..... ..+.+... ....++.++...
T Consensus 78 lv~d~~~~-~s~~~~~~~w~~~i~~~----~~~~piilvgnK~Dl~~~~~---~~~~l~~~------~~~~v~~~~~~~- 142 (175)
T cd01874 78 VCFSVVSP-SSFENVKEKWVPEITHH----CPKTPFLLVGTQIDLRDDPS---TIEKLAKN------KQKPITPETGEK- 142 (175)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEECHhhhhChh---hHHHhhhc------cCCCcCHHHHHH-
Confidence 99999987 7788886 476666543 25789999999999864321 11111100 000111110000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+....+.+.|++|||++|+ ++++++.+.++
T Consensus 143 -----------~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 143 -----------LARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred -----------HHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111234689999999999 99999888765
No 62
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.1e-26 Score=179.05 Aligned_cols=164 Identities=20% Similarity=0.342 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+|+++|++|+|||||+++|.+....... ...+.++.. ....... .....+++|||||+..+...+..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~-~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG-LNIGTIE--VGNARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc-cceEEEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 5899999999999999999864321100 011111111 1111111 2246899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....++..+++... ..+.|+++|+||+|+......++..+.+......+
T Consensus 78 v~vvd~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~--------------- 139 (167)
T cd04160 78 IYVIDSTDR-ERFEESKSALEKVLRNEA--LEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI--------------- 139 (167)
T ss_pred EEEEECchH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEEccccccCCCHHHHHHHhccccccc---------------
Confidence 999999886 567778888888776432 25799999999999976555444433333211100
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-...++++++||++|+ ++++++||.++
T Consensus 140 --------------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 140 --------------GRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred --------------cCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 0234689999999999 99999999763
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=7.7e-26 Score=177.23 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=116.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|.+|||||||+.++..+.+...+.++... .......+++..+.+++|||||++.+...+..+++++|++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD----NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 77 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee----eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence 58999999999999999999998875544444321 11112234666788999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. ++++.+. .|+..+... ..+.|+++|+||+|+..... .+...+. ....++..+..+
T Consensus 78 lv~d~~~~-~sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~~~~~~~~~~~~----------~~~~v~~~~~~~ 142 (174)
T cd01871 78 ICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEK----------KLTPITYPQGLA 142 (174)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEeeChhhccChhhHHHHhhc----------cCCCCCHHHHHH
Confidence 99999997 7888885 466655443 25799999999999964321 1111000 000011100000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+....+...|+||||++|+ ++++++.+.+.
T Consensus 143 ------------~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 143 ------------MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ------------HHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 1111223579999999999 99999998764
No 64
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=9.7e-26 Score=178.27 Aligned_cols=169 Identities=21% Similarity=0.300 Sum_probs=121.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|||||||++++.++.+.. ..++..++.. .... .++.+.+|||||+..++..+..+++.+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~-----~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad 86 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE-----ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVN 86 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE-----EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 567899999999999999999999876532 2222222211 1111 2368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.++++... ..++|+++|+||+|+....+.+++.+.+.- .+. ..+.
T Consensus 87 ~ii~vvD~~~~-~~~~~~~~~l~~l~~~~~--~~~~piliv~NK~Dl~~~~~~~~i~~~l~l--~~~--~~~~------- 152 (184)
T smart00178 87 GIVYLVDAYDK-ERFAESKRELDALLSDEE--LATVPFLILGNKIDAPYAASEDELRYALGL--TNT--TGSK------- 152 (184)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCCCHHHHHHHcCC--Ccc--cccc-------
Confidence 99999999986 667888888888776432 257899999999999766566554443320 000 0000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
-+.-...+.+++|||++|+ ++++.+||.+++
T Consensus 153 -------------~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 153 -------------GKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred -------------cccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence 0001246679999999999 999999998763
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=8e-26 Score=176.20 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=119.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||++++.+..+.....++. +.++.......++....+.+|||||++++......+++.+|++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3699999999999999999999887533322222 2223223333455567899999999999988899999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .++..+..|+.++.... ..+.|+++|+||+|+..... .++.... ..
T Consensus 81 l~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~--------------- 137 (168)
T cd01866 81 LLVYDITRR-ETFNHLTSWLEDARQHS---NSNMTIMLIGNKCDLESRREVSYEEGEAF----AK--------------- 137 (168)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccCCCHHHHHHH----HH---------------
Confidence 999999986 78899999998886642 26799999999999974322 2221111 11
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++++.+.+
T Consensus 138 -----------------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 138 -----------------EHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=9.2e-26 Score=179.51 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=118.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+||+++|++|||||||++++.++.+... ..++. +.++......+++..+.+++|||||+.++...+..+++.+|++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATV---GIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcc---cceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 4899999999999999999998876432 22222 2223322334456668899999999999988889999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+....... .+...+...
T Consensus 78 i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~----------------- 134 (191)
T cd04112 78 LLLYDITNK-ASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSGERVVK--REDGERLAK----------------- 134 (191)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchhccccC--HHHHHHHHH-----------------
Confidence 999999987 67888888888877642 2578999999999996432211 011111111
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....|+++||++|+ +++++++|.+.+
T Consensus 135 ---------------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 135 ---------------EYGVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998764
No 67
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-26 Score=167.72 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=129.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
-+||+++|..|+|||+|+.+++.+-|+.+.-.++ +.++.+..+.+++..+++++|||+|+++|++....|++.++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgati---gvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCcee---eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 3699999999999999999999999987766666 6778888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
|+|||++.. .+++-+.+|+.++-+.++ .+.--|+|+||+|+.+.+. ++.+.+.+.+.
T Consensus 84 ilvydiscq-psfdclpewlreie~yan---~kvlkilvgnk~d~~drrevp~qigeefs~~------------------ 141 (213)
T KOG0095|consen 84 ILVYDISCQ-PSFDCLPEWLREIEQYAN---NKVLKILVGNKIDLADRREVPQQIGEEFSEA------------------ 141 (213)
T ss_pred EEEEecccC-cchhhhHHHHHHHHHHhh---cceEEEeeccccchhhhhhhhHHHHHHHHHh------------------
Confidence 999999986 689999999999987643 5566799999999976643 23333333321
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...-|+|+||+..+ ++.|+.-+.-
T Consensus 142 -----------------qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 142 -----------------QDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred -----------------hhhhhhhhcccchhhHHHHHHHHHH
Confidence 22347889999888 8888765543
No 68
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-26 Score=176.76 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=129.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++++|||-|+.++..+.|.-...+++ +.++......++++.++.+||||+|+++|+.....|++++.+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI---Gvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI---GVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccce---eEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 45799999999999999999999999866655556 566777777889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||++.. .+++.+..|+.++..+.. .++++++|+||+||...+.+. +..+.+.+
T Consensus 90 AllVYDITr~-~Tfenv~rWL~ELRdhad---~nivimLvGNK~DL~~lraV~te~~k~~Ae------------------ 147 (222)
T KOG0087|consen 90 ALLVYDITRR-QTFENVERWLKELRDHAD---SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE------------------ 147 (222)
T ss_pred eEEEEechhH-HHHHHHHHHHHHHHhcCC---CCeEEEEeecchhhhhccccchhhhHhHHH------------------
Confidence 9999999987 789999999999999864 799999999999997644321 11111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
.+...|+++||..+. +++.++-+
T Consensus 148 -----------------~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 148 -----------------KEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred -----------------hcCceEEEecccccccHHHHHHHH
Confidence 345679999999998 77766544
No 69
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=1.1e-25 Score=185.28 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=120.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||+++++++.+...+.+++ .++......+++..+.++||||+|++.+..+...++..+|++|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi----~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iI 76 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI----EDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFI 76 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh----hHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 489999999999999999999888755433333 3333334445677789999999999999888888899999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCC------CCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNST------VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
+|||+++. .+++.+..|+.++..... ....+.|+++|+||+|+...... ..+.+.+.+..
T Consensus 77 lVfdv~~~-~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~~----------- 142 (247)
T cd04143 77 LVFSLDNR-ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVGG----------- 142 (247)
T ss_pred EEEeCCCH-HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHHh-----------
Confidence 99999987 789988888888865311 01257899999999999742221 11112211110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+..
T Consensus 143 --------------------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 143 --------------------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred --------------------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 124579999999999 999999998753
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.1e-25 Score=181.51 Aligned_cols=161 Identities=14% Similarity=0.243 Sum_probs=119.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||+++|.++.+.....++. +.++......+ ++..+.+++|||||++.+...+..+++.+|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti---~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV---GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVG 78 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee---ceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcE
Confidence 4699999999999999999999987654433332 22222222222 3555789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||+++. .+++.+..|+.++..... ....|+++|+||+|+...... .+..+.+. .
T Consensus 79 iilv~D~~~~-~Sf~~l~~~~~~i~~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~---~--------------- 137 (211)
T cd04111 79 VLLVFDITNR-ESFEHVHDWLEEARSHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLA---K--------------- 137 (211)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCeEEEEEEccccccccccCHHHHHHHH---H---------------
Confidence 9999999997 789999999998876532 246788999999999753321 11111111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 138 -----------------~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 138 -----------------DLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred -----------------HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998754
No 71
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=5.7e-26 Score=181.19 Aligned_cols=152 Identities=15% Similarity=0.230 Sum_probs=115.7
Q ss_pred EcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeC
Q 024474 70 AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDA 149 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~ 149 (267)
+|.+|||||||+++++.+.+...+.+++. .++......+++..+.+.+|||+|+++++.++..+++++|++|+|||+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig---~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~ 77 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 77 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCcee---EEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEEC
Confidence 59999999999999998876544444332 223222333456678999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCC
Q 024474 150 LEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIP 229 (267)
Q Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (267)
++. .++..+..|+.++.+.. .++|+++|+||+|+....... +.+ + +..
T Consensus 78 t~~-~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~---~~~-~-~~~---------------------- 125 (200)
T smart00176 78 TAR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKA---KSI-T-FHR---------------------- 125 (200)
T ss_pred CCh-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCH---HHH-H-HHH----------------------
Confidence 997 78899989998887642 579999999999985422111 111 0 000
Q ss_pred CCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 230 GQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|++|||++|+ |+++++||.+.+
T Consensus 126 ---------~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 126 ---------KKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ---------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 234579999999999 999999998754
No 72
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=1.5e-25 Score=173.27 Aligned_cols=159 Identities=23% Similarity=0.321 Sum_probs=117.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||+..+......+++.+|+++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 77 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATI---GVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcc---cceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence 489999999999999999999887543222222 22233333333555678999999999999888899999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|+++. .+++....|+..+..... ..+.|+++|+||+|+.... ..++..+.. .
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~~~~~~~~~~~~~~----~----------------- 133 (161)
T cd01863 78 LVYDVTRR-DTFTNLETWLNELETYST--NNDIVKMLVGNKIDKENREVTREEGLKFA----R----------------- 133 (161)
T ss_pred EEEECCCH-HHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCcccccccCHHHHHHHH----H-----------------
Confidence 99999987 678888888877766532 3679999999999997332 222211111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++++.+.+
T Consensus 134 ---------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 134 ---------------KHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred ---------------HcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 224579999999999 999999988753
No 73
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.3e-25 Score=182.44 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|||||||++++..+.|...+.+++. ..+.. ...+++..+.+++|||+|++.|..+...+++++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~---~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF---ENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee---eeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 467999999999999999999999888665555442 22322 23446777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 143 IVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|+|||+++. .+++. ...|+.++.... .+.|+++|+||+||..
T Consensus 88 vIlVyDit~~-~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 88 VLLCFDISRP-ETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 9999999987 78887 478888776542 4689999999999854
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=1.7e-25 Score=173.23 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=120.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++++.+.....++. +..+......+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTI---GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 589999999999999999999988644222222 22233333344566678999999999988888889999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.... ..++..+. ..
T Consensus 79 ~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~---------------- 134 (163)
T cd01860 79 VVYDITSE-ESFEKAKSWVKELQRNA---SPNIIIALVGNKADLESKRQVSTEEAQEY----AD---------------- 134 (163)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccccCcCCHHHHHHH----HH----------------
Confidence 99999987 67888888888887653 2678999999999987432 22221111 11
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|. +++++++|.+.++
T Consensus 135 ----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 135 ----------------ENGLLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred ----------------HcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 112578999999999 9999999998763
No 75
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=1.3e-25 Score=178.15 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++.++.+...+.++. +.++......+++..+.+++|||||++.+...+..+++.+|+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI---GVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 489999999999999999999988754333333 22333334444566688999999999999989999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|||+++. .++..+..|+..+.... ....|+++|+||+|+....... +....+.+
T Consensus 78 lv~d~~~~-~s~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-------------------- 133 (188)
T cd04125 78 LVYDVTDQ-ESFENLKFWINEINRYA---RENVIKVIVANKSDLVNNKVVDSNIAKSFCD-------------------- 133 (188)
T ss_pred EEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcccccCCHHHHHHHHH--------------------
Confidence 99999987 78999999988877642 2468999999999987543211 11111110
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 134 ---------------~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 134 ---------------SLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ---------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999987754
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=2.1e-25 Score=174.18 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=118.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. +.++......+.+..+.+++|||||+..+...+..+++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 77 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV 77 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc---ceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence 489999999999999999999887643332222 22232233334556678899999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|||++++ .+++....|...++..... ...++|+++|+||+|+..+. ..++....++ .
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~-------------- 138 (172)
T cd01862 78 LVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----S-------------- 138 (172)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----H--------------
Confidence 99999986 5677777777766654321 12479999999999997422 2332222111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ +++++++|.+.+
T Consensus 139 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 139 -----------------NGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------------cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 223579999999999 999999998754
No 77
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.8e-26 Score=166.38 Aligned_cols=154 Identities=25% Similarity=0.381 Sum_probs=126.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
-+|++++|+.|+|||+|+++++..++.+....++ +.++....+.+.++.+++++|||+|+++|++..+.|++++.+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi---GveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI---GVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccccccee---eeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3599999999999999999999999877666666 4455566666788899999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|||++.. +++..+..|+.+....+ ..++.+++++||.||..++.+..... .+
T Consensus 86 lLVYD~Tsr-dsfnaLtnWL~DaR~lA---s~nIvviL~GnKkDL~~~R~VtflEA--s~-------------------- 139 (214)
T KOG0086|consen 86 LLVYDITSR-DSFNALTNWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEA--SR-------------------- 139 (214)
T ss_pred EEEEeccch-hhHHHHHHHHHHHHhhC---CCcEEEEEeCChhhcChhhhhhHHHH--Hh--------------------
Confidence 999999998 89999999999987754 47888999999999987765532111 00
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHH
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 258 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~ 258 (267)
|.+ .+.+.+.|+||+||+ +++-+
T Consensus 140 -----------Faq-Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 140 -----------FAQ-ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred -----------hhc-ccceeeeeecccccccHHHHH
Confidence 111 345678999999999 87654
No 78
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=2.6e-25 Score=176.30 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.||+++|++|+|||||++++.++.+...+.++.. ..+.. .... ++..+.+.+|||||++++...+..+++++|++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~---~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 76 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF---ENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVL 76 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee---eeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEE
Confidence 4899999999999999999999887554443332 12221 1222 25567899999999999999998999999999
Q ss_pred EEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH--HHHHHHHHHHHHHhhhhccccccc
Q 024474 144 VFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--IRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|||+++. .+++.+. .|+..+... ..+.|+++|+||+|+........ ..+..++....
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~------------- 138 (187)
T cd04132 77 LICYAVDNP-TSLDNVEDKWFPEVNHF----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK------------- 138 (187)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH-------------
Confidence 999999986 6788775 466655442 25789999999999965431100 01111111110
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++++.+.+
T Consensus 139 ------------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 139 ------------------QGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred ------------------cCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 111268999999999 999998887653
No 79
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.2e-25 Score=181.61 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|.+|+|||||++++..+.+.. ..+++. ..+... ....+.+.+|||||++.+...+..+++.+|++|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig---~~~~~~----~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~I 72 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVG---GAFYLK----QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVI 72 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccc---eEEEEE----EeeEEEEEEEeCCCcccchhhHHHHhccCCEEE
Confidence 489999999999999999999988743 233222 222211 123467999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|||+++. .+++.+..|+..+.+.. ..++|+++|+||+|+..
T Consensus 73 lV~Dvt~~-~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 73 LTYDVSNV-QSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 99999997 78999988888877542 25789999999999965
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=2.3e-25 Score=172.53 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=119.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.+..+.....++. +.++.......++..+.+++||+||+..+......+++.+|+++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTI---GVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 489999999999999999999887643322222 22222223333555578999999999998888999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|||+++. .+++.+..|+..+.... ..++|+++|+||+|+.... ..+...+.. .
T Consensus 78 lv~d~~~~-~s~~~~~~~l~~~~~~~---~~~~pivvv~nK~D~~~~~~~~~~~~~~~~----~---------------- 133 (164)
T smart00175 78 LVYDITNR-ESFENLKNWLKELREYA---DPNVVIMLVGNKSDLEDQRQVSREEAEAFA----E---------------- 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEchhcccccCCCHHHHHHHH----H----------------
Confidence 99999986 67888888888877653 2579999999999987532 222222111 1
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 134 ----------------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 134 ----------------EHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123469999999999 9999999998764
No 81
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=1.8e-25 Score=181.06 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+++|||||++++...+..+++.+++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~---g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI---GVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce---eEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45799999999999999999999887643333322 223333344446666899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... .+....+..
T Consensus 88 ~ilv~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------------------ 145 (216)
T PLN03110 88 ALLVYDITKR-QTFDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------------------ 145 (216)
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHHhC---CCCCeEEEEEEChhcccccCCCHHHHHHHHH------------------
Confidence 9999999987 67888889988776542 257999999999998654322 111111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.|+++||++|+ +++++++|.+.+
T Consensus 146 -----------------~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 146 -----------------KEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224579999999999 999999997654
No 82
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=4.1e-25 Score=175.57 Aligned_cols=173 Identities=23% Similarity=0.364 Sum_probs=120.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||++++.++.+. ...++..++...+ .++ ...+.+|||||+..+...+..+++.+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i-----~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEEL-----TIG--NIKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEE-----EEC--CEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 46789999999999999999999987653 2333333322211 122 267899999999988888899999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....++.++++... ..+.|+++|+||+|+......+++.+.+.. .....+.
T Consensus 89 ~iilV~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~------- 154 (190)
T cd00879 89 GIVFLVDAADP-ERFQESKEELDSLLSDEE--LANVPFLILGNKIDLPGAVSEEELRQALGL----YGTTTGK------- 154 (190)
T ss_pred EEEEEEECCcH-HHHHHHHHHHHHHHcCcc--ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc----ccccccc-------
Confidence 99999999986 567777888888876432 256899999999999765444433332221 0000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.... -......+.+++|||++|+ ++++++||.+++
T Consensus 155 --------~~~~-~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 155 --------GVSL-KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred --------cccc-cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0000 0001245679999999999 999999998764
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.93 E-value=2.3e-25 Score=177.83 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=112.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~~ 136 (267)
+||+++|.+|||||||++++.++.+...+.++.. ..........++..+.+++|||||...+... ...+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~---~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH---RRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc---cccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 4899999999999999999999887554333321 1222222334566678999999997654221 2345
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++.+|++|+|||++++ .+++.+..|+..+.........++|+++|+||+|+...+... .+.+++...+
T Consensus 78 ~~~ad~iilv~D~~~~-~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~~--------- 145 (198)
T cd04142 78 LRNSRAFILVYDICSP-DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVRK--------- 145 (198)
T ss_pred hccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHHH---------
Confidence 7899999999999987 788888888887776421113679999999999996542211 1111111010
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.|+++||++|. ++++++.+.+.
T Consensus 146 ----------------------~~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 146 ----------------------SWKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ----------------------hcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 124579999999999 99998877654
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=3.1e-25 Score=172.85 Aligned_cols=161 Identities=16% Similarity=0.211 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.... .++...........++..+.+++|||||+.++..+++.+++.+++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v 77 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence 58999999999999999999988764332 23333222333334566678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|.++. .+++....|...+.+... ..+.|+++|+||+|+........ +......+.
T Consensus 78 lv~~~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~~----------------- 135 (168)
T cd04177 78 LVYSVTSE-ASLNELGELREQVLRIKD--SDNVPMVLVGNKADLEDDRQVSR--EDGVSLSQQ----------------- 135 (168)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCCEEEEEEChhccccCccCH--HHHHHHHHH-----------------
Confidence 99999987 678888888777765321 36799999999999965432210 001110000
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.++++++||++|+ ++++++||.+++
T Consensus 136 --------------~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 136 --------------WGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --------------cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 85
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=3.8e-25 Score=174.75 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=116.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|||||||++++..+.+... .++....... ......++..+.+.+|||||+++++..+..+++.+|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~--~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEK--IKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeE--EEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence 46999999999999999999998765422 2222111111 11111134557899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....|+.++..... ..+.|+++|+||+|+......+++.+.+. ++.
T Consensus 80 i~v~D~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~---------------- 138 (183)
T cd04152 80 VFVVDSVDV-ERMEEAKTELHKITRFSE--NQGVPVLVLANKQDLPNALSVSEVEKLLA--LHE---------------- 138 (183)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhhhh--cCCCcEEEEEECcCccccCCHHHHHHHhC--ccc----------------
Confidence 999999986 567777777777765422 25789999999999875433333221111 000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ....+.++++||++|+ ++++++||.+.+
T Consensus 139 -----------~~-~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 -----------LS-ASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred -----------cC-CCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 0123568999999999 999999998764
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=2e-25 Score=172.03 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=112.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++..+.+.... .|+...+. ....+++..+.+.+|||+|++. ..+++.+|+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~~~~~~~-~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~i 70 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE----SPEGGRFK-KEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVI 70 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCC----CCCccceE-EEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEE
Confidence 38999999999999999999988764432 22233332 3344567677899999999975 34678899999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|||.++. .+++.+..|+.++..... ..+.|+++|+||.|+..........+..++ +.
T Consensus 71 lv~d~~~~-~sf~~~~~~~~~i~~~~~--~~~~piilvgnK~Dl~~~~~~~v~~~~~~~-~~------------------ 128 (158)
T cd04103 71 FVFSLENE-ASFQTVYNLYHQLSSYRN--ISEIPLILVGTQDAISESNPRVIDDARARQ-LC------------------ 128 (158)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeeHHHhhhcCCcccCHHHHHH-HH------------------
Confidence 99999997 889999999988876532 256899999999998532111100111111 11
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.-..++.|+||||++|+ |+++++++.+.
T Consensus 129 ------------~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 129 ------------ADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred ------------HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 00234679999999999 99999998765
No 87
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=1.6e-25 Score=172.64 Aligned_cols=156 Identities=22% Similarity=0.365 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||++++..+.+.. ..++...+ ... ++.....+++|||||+.+++..+..+++.+|++|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~-----~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 72 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN-----VET--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIY 72 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC-----eEE--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 68999999999999999998776532 22222111 111 12334689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++..+++... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 73 v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~--~------------------- 128 (158)
T cd04151 73 VVDSTDR-DRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGALSEAEISEKLGL--S------------------- 128 (158)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCCCCHHHHHHHhCc--c-------------------
Confidence 9999886 456666677766655322 257899999999999755433222111100 0
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. +. ..+.+++++||++|+ ++++++||.+
T Consensus 129 ------~--~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 129 ------E--LK--DRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ------c--cC--CCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0 00 224579999999999 9999999975
No 88
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=4.2e-25 Score=162.88 Aligned_cols=164 Identities=23% Similarity=0.378 Sum_probs=127.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
+.+..+|+++|..|+||||++++|.+... .++.|+ ..+..+... .+.+.+++||.+|+..+++.|..|+..+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt-~gf~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPT-LGFQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCc-cceeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 45689999999999999999999998752 223332 223333333 3447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. ..+++....+.+++....+ .+.|+++++||.|+.++-..+.+...++- ..+
T Consensus 85 dglIwvvDssD~-~r~~e~~~~L~~lL~eerl--aG~~~Lvlank~dl~~~l~~~~i~~~~~L--~~l------------ 147 (185)
T KOG0073|consen 85 DGLIWVVDSSDR-MRMQECKQELTELLVEERL--AGAPLLVLANKQDLPGALSLEEISKALDL--EEL------------ 147 (185)
T ss_pred CeEEEEEECchH-HHHHHHHHHHHHHHhhhhh--cCCceEEEEecCcCccccCHHHHHHhhCH--HHh------------
Confidence 999999999987 6788888888888875543 77999999999999987777665543331 110
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+. ...++.+.|||.+|+ +.+-.+||...+
T Consensus 148 --------------~k--s~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 148 --------------AK--SHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred --------------cc--ccCceEEEEeccccccHHHHHHHHHHHH
Confidence 00 346789999999999 999999998764
No 89
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=2.6e-25 Score=172.63 Aligned_cols=155 Identities=23% Similarity=0.339 Sum_probs=114.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|||||||++++.++.+.....++.... ...+++..+.+.+|||||+.+++..+..+++++|++|+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-------~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-------SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-------eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 7899999999999999999887644333333211 112344557899999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 226 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
||+++. .++.....|+.++.... .++|+++|+||+|+......+++.+.+.. ..
T Consensus 75 ~D~t~~-~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~~--~~------------------- 128 (164)
T cd04162 75 VDSADS-ERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELEL--EP------------------- 128 (164)
T ss_pred EECCCH-HHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhCC--hh-------------------
Confidence 999986 56788888888887542 67999999999999876655443322210 00
Q ss_pred CCCCCCcccccccceeEEEEeeecc------Cc-chhHHHHHHh
Q 024474 227 GIPGQAFSFSQCHNKVSVAEASGLT------GE-ISQVEQFIRE 263 (267)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Sa~~------g~-i~~l~~~l~~ 263 (267)
+.. ..++.++++||++ |+ +.++++.|.+
T Consensus 129 --------~~~-~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 129 --------IAR-GRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred --------hcC-CCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 100 2356678888887 88 9998887753
No 90
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=3.8e-25 Score=176.20 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.||+++|++|+|||||+++++++.+.. .+.+++ +..+......+++..+.+++|||||++++..++..+++++|++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i 77 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI---GAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAA 77 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccce---eeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence 389999999999999999999987643 222222 2223333444566677899999999999988888999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHH-HHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFI-RKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+++. .+++....|+..+... ..+.|+++|+||+|+..... ...+ .+.+.+...
T Consensus 78 ilv~d~~~~-~s~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~--------------- 137 (193)
T cd04118 78 IVCYDLTDS-SSFERAKFWVKELQNL----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD--------------- 137 (193)
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHhc----CCCCCEEEEEEcccccccccccCccCHHHHHHHHH---------------
Confidence 999999987 6788888888777653 25789999999999864321 1000 011111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 -----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 138 -----------------EIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998653
No 91
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.93 E-value=4.6e-25 Score=171.02 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=114.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.||+++|++|||||||++++... .+.....++..+ ++......+ .+..+.+.+|||||+..+..++..+++++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 77 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGC---DFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPS 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEE---EEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCC
Confidence 38999999999999999999864 444333333322 222222222 355688999999999998889999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF-IRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|+|+++. .++.....|+..+.... .+.|+++|+||+|+........ ..+.+. .
T Consensus 78 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~-------------- 135 (164)
T cd04101 78 VFILVYDVSNK-ASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFA---Q-------------- 135 (164)
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHH---H--------------
Confidence 99999999986 67888888887776542 5689999999999965432211 111111 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|. +++++++|.+.+
T Consensus 136 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 136 ------------------ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ------------------HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 123468999999999 999999998753
No 92
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=6.1e-25 Score=169.35 Aligned_cols=157 Identities=26% Similarity=0.407 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++++..+. ...++...+. .... .....+.+|||||+..+...+..+++.+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~-----~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 72 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV-----ETVE--YKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF 72 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce-----EEEE--ECCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence 6899999999999999999988632 2222222111 1111 123689999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|++++ .++.....++..+..... ..+.|+++|+||+|+......+++.+.+....
T Consensus 73 v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-------------------- 129 (158)
T cd00878 73 VVDSSDR-ERIEEAKEELHKLLNEEE--LKGVPLLIFANKQDLPGALSVSELIEKLGLEK-------------------- 129 (158)
T ss_pred EEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEeeccCCccccCHHHHHHhhChhh--------------------
Confidence 9999986 678888888888877543 36899999999999986654444333222110
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++++++||++|. +++++++|.++
T Consensus 130 -----------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 130 -----------ILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred -----------ccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 01346789999999999 99999999753
No 93
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=5.4e-25 Score=177.90 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=94.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||++++..+.++..+.+++.. .+. ....+++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~---~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE---NYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc---ceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 58999999999999999999998876655555422 222 23344677789999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||+++. .+++.+. .|...+... ..+.|+++|+||+|+...
T Consensus 78 lvfdis~~-~Sf~~i~~~w~~~~~~~----~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 78 ICFDISRP-ETLDSVLKKWQGETQEF----CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEECcccccc
Confidence 99999997 7888885 455444332 267999999999999653
No 94
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=161.61 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=128.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-.+|++++|+..+|||||+.++.+..|..+.+++. +.++....+.-+.+.+.+++|||+|++.++...-.|++++++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv---GidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV---GIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeee---eeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 35699999999999999999999999987777766 455666666556777999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. +++..+..|..++.... ..+.|+|+|+||||+..++.... +.-....+
T Consensus 97 fiLmyDitNe-eSf~svqdw~tqIktys---w~naqvilvgnKCDmd~eRvis~--e~g~~l~~---------------- 154 (193)
T KOG0093|consen 97 FILMYDITNE-ESFNSVQDWITQIKTYS---WDNAQVILVGNKCDMDSERVISH--ERGRQLAD---------------- 154 (193)
T ss_pred EEEEEecCCH-HHHHHHHHHHHHheeee---ccCceEEEEecccCCccceeeeH--HHHHHHHH----------------
Confidence 9999999987 78999999999887763 37899999999999987764321 11111122
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
....+|||+|||.+- ++.+++.|..
T Consensus 155 ----------------~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 155 ----------------QLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ----------------HhChHHhhhcccccccHHHHHHHHHH
Confidence 223478999999998 7777766543
No 95
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=4.5e-25 Score=170.38 Aligned_cols=158 Identities=25% Similarity=0.404 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|+|||||++++.++.+.. ..++.. +....... +..+.+.+|||||+..+...+..+++.+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~-----~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG-----FNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccC-----cceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999887532 122221 11121221 234689999999999998999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++.+++.... ..+.|+++|+||+|+.......++...+.. .
T Consensus 74 v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~--~------------------- 129 (160)
T cd04156 74 VVDSSDE-ARLDESQKELKHILKNEH--IKGVPVVLLANKQDLPGALTAEEITRRFKL--K------------------- 129 (160)
T ss_pred EEECCcH-HHHHHHHHHHHHHHhchh--hcCCCEEEEEECcccccCcCHHHHHHHcCC--c-------------------
Confidence 9999986 567888888888876432 257999999999999654333322211110 0
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. +.. ..++.+++|||++|+ +++++++|.+
T Consensus 130 ------~--~~~-~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 130 ------K--YCS-DRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ------c--cCC-CCcEEEEecccccCCChHHHHHHHhc
Confidence 0 000 234679999999999 9999999865
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=1e-24 Score=168.42 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=116.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++. ............+..+.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 77 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT---QASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAI 77 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc---ceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence 489999999999999999999887643322222 12222222223455568999999999988889999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++....|+.++.... ..+.|+++|+||+|+........ +.+.+...
T Consensus 78 ~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~------------------ 133 (162)
T cd04123 78 LVYDITDA-DSFQKVKKWIKELKQMR---GNNISLVIVGNKIDLERQRVVSK--SEAEEYAK------------------ 133 (162)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccCCCH--HHHHHHHH------------------
Confidence 99999987 67888888877776542 24789999999999875432211 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++||.+.+
T Consensus 134 --------------~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 134 --------------SVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred --------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123467999999999 999999998764
No 97
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=5.6e-25 Score=172.23 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|+|||||++++.++.+...+.++. .........+++..+.+.+|||||++++...+..+++.+|++|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 76 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTV----FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLIC 76 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcE----EeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEE
Confidence 5899999999999999999988754433332 122222233456667899999999999999898999999999999
Q ss_pred EeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 147 VDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 147 ~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
||+++. .+++.+. .|+..+... ..+.|+++|+||+|+.......+ .+.+ .....++..+.
T Consensus 77 ~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~---~~~~------~~~~~v~~~~~----- 137 (174)
T smart00174 77 FSVDSP-ASFENVKEKWYPEVKHF----CPNTPIILVGTKLDLREDKSTLR---ELSK------QKQEPVTYEQG----- 137 (174)
T ss_pred EECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEecChhhhhChhhhh---hhhc------ccCCCccHHHH-----
Confidence 999987 6788775 477766553 25799999999999975321100 0000 00000000000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+....+...+++|||++|+ ++++++.|.+.
T Consensus 138 -------~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 138 -------EALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred -------HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 001111223478999999999 99999988765
No 98
>PLN03108 Rab family protein; Provisional
Probab=99.93 E-value=1e-24 Score=175.94 Aligned_cols=160 Identities=17% Similarity=0.200 Sum_probs=120.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+++|++..+.....+++ +.++......+++..+.+++|||+|++.+...+..+++.+|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti---~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 35799999999999999999999887644333222 223333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++.+..|+..+.... ....|+++|+||+|+..... .++..+.. +
T Consensus 82 ~vlv~D~~~~-~s~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 139 (210)
T PLN03108 82 ALLVYDITRR-ETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAHRRAVSTEEGEQFA----K-------------- 139 (210)
T ss_pred EEEEEECCcH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccCCCHHHHHHHH----H--------------
Confidence 9999999987 67888888888776542 25789999999999975432 22222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++|+.+++
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 ------------------EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999998887654
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=9.3e-25 Score=169.04 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++++...+.....++. ..........++..+.+.+|||||+.++......+++.+|+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 76 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK----ADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcc----hhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence 489999999999999999999887654333222 2222223334666678999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|.++. .++.....|+..+..... ..++|+++|+||+|+.... ......+ ..+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~----~~~---------------- 133 (164)
T cd04139 77 LVFSITDM-ESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLEDKRQVSSEEAAN----LAR---------------- 133 (164)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEccccccccccCHHHHHH----HHH----------------
Confidence 99999886 678888888888877532 2679999999999997522 1111111 111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 134 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 134 ----------------QWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ----------------HhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998765
No 100
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.4e-25 Score=171.69 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
++.+||+++|.+|||||||++++.++.+. ..+.++. +..+......+++..+.+.+||++|.+.+...+..+++++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~---~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 78 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI---KPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAAC 78 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc---CcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcC
Confidence 46689999999999999999999998875 4333333 2233333344456667899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|++++ .+++.+..|+..+.. ..++|+++|+||+|+....... ...+.+.+ .
T Consensus 79 d~~llv~d~~~~-~s~~~~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~---~------------ 137 (169)
T cd01892 79 DVACLVYDSSDP-KSFSYCAEVYKKYFM-----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCR---K------------ 137 (169)
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHhcc-----CCCCeEEEEEEcccccccccccccCHHHHHH---H------------
Confidence 999999999886 677777777765422 2478999999999996432210 00011111 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ ++++++.|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 -------------------LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred -------------------cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 011135899999999 999999887753
No 101
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.9e-25 Score=167.34 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=134.9
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
....+..+|+++|..|+||||++++|..+++.. +++++..+..++. .+++++++||..|+..+++.|..|++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-tvPTiGfnVE~v~-------ykn~~f~vWDvGGq~k~R~lW~~Y~~ 83 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TVPTIGFNVETVE-------YKNISFTVWDVGGQEKLRPLWKHYFQ 83 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCccc-CCCccccceeEEE-------EcceEEEEEecCCCcccccchhhhcc
Confidence 346788899999999999999999998877532 2444433322222 23478999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
+.+++|||+|+++. ..+.+..+.+..++....+ .+.|+++++||.|+..+.+..++.+.+.-. .+
T Consensus 84 ~t~~lIfVvDS~Dr-~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~als~~ei~~~L~l~--~l---------- 148 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDR-ERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGALSAAEITNKLGLH--SL---------- 148 (181)
T ss_pred CCcEEEEEEeCCcH-HHHHHHHHHHHHHHcCccc--CCceEEEEechhhccccCCHHHHHhHhhhh--cc----------
Confidence 99999999999997 6799999999999987653 789999999999999998887777665520 00
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...++.+..|+|.+|+ +.+.++||.+.++
T Consensus 149 -------------------~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 -------------------RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred -------------------CCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1357788999999999 9999999998764
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=2.4e-24 Score=167.48 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|.+|||||||++++.++.+...... . ...+... ..+.+..+.+++|||||...+...+..+++.+|++++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPR-V---LPEITIP-ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCC-c---ccceEee-eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 899999999999999999999887543211 1 1111111 1234556789999999999888888888999999999
Q ss_pred EEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|||++++ .+++.+. .|+..+... ..+.|+++|+||+|+.+........+.+......+
T Consensus 77 v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------- 135 (166)
T cd01893 77 VYSVDRP-STLERIRTKWLPLIRRL----GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---------------- 135 (166)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHH----------------
Confidence 9999987 6777765 455544432 14789999999999976554322222222111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++++||++|. ++++++.+.+.
T Consensus 136 --------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 136 --------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred --------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 111268999999999 99999888765
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.1e-24 Score=174.34 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||+++++++.+...+.++. .........+.+..+.+++|||||+..+..++..++..+|++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil 76 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV----EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch----hhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence 68999999999999999999987644322222 22222223334555789999999999998888899999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|||+++. .+++....|+..+..... ..++|+++|+||+|+........... ..+...
T Consensus 77 v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~~~-~~~~~~------------------- 133 (198)
T cd04147 77 VYAVDDP-ESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLEEERQVPAKD-ALSTVE------------------- 133 (198)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEccccccccccccHHH-HHHHHH-------------------
Confidence 9999986 678888888877776432 25799999999999865321111111 111000
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+..++++||++|. ++++++||.+.+.
T Consensus 134 ------------~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 134 ------------LDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ------------hhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 0123468999999999 9999999998754
No 104
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=9.6e-25 Score=187.43 Aligned_cols=205 Identities=21% Similarity=0.254 Sum_probs=149.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhcCCchHH------HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHH
Q 024474 9 LPEGMEQWKKELEEWLNRGIEFINQIPPTQL------YIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (267)
Q Consensus 9 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~ 82 (267)
+-+.+.+-+.++++++++.+||.++.-+... .+..+...+..++....+...-+++.+++++|.||+|||||+|
T Consensus 156 ~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLN 235 (454)
T COG0486 156 LINELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLN 235 (454)
T ss_pred HHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHH
Confidence 3334444445579999999999777222111 1444455555566566666677899999999999999999999
Q ss_pred HHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------hhhccCCEEEEEEeCCCCCC
Q 024474 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD--------EFLPQAAGIVFVVDALEFLP 154 (267)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~~ 154 (267)
.|++.+ .+.++.++.|++++......++| +++.++||+|.++..+..+ ..+.+||.++||+|++.+.+
T Consensus 236 aL~~~d--~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~ 311 (454)
T COG0486 236 ALLGRD--RAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD 311 (454)
T ss_pred HHhcCC--ceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc
Confidence 999986 56788899999888888777777 7899999999998766654 36788999999999998511
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcc
Q 024474 155 NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234 (267)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (267)
.....+.+. ...+.|+++|.||+||.........
T Consensus 312 ---~~d~~~~~~------~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------------- 345 (454)
T COG0486 312 ---KEDLALIEL------LPKKKPIIVVLNKADLVSKIELESE------------------------------------- 345 (454)
T ss_pred ---hhhHHHHHh------cccCCCEEEEEechhcccccccchh-------------------------------------
Confidence 222222221 2377899999999999865432110
Q ss_pred cccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 235 FSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 235 ~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+..++.+||++|+ ++.|.+.|.+.+
T Consensus 346 --~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 346 --KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred --hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 01223368999999999 999999998764
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=2.2e-24 Score=168.02 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=116.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++++++|++|+|||||++++.++.+.....++. +.++......+.+..+.+.+|||||+..+...+..+++.+|+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999776543322222 112223333345656789999999999999988999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .+++....|+..+.... ..+.|+++|+||+|+....... ..+.+.+.+
T Consensus 83 ~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~~~i~---~~~~~~~~~--------------- 140 (169)
T cd04114 83 LILTYDITCE-ESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAERREVS---QQRAEEFSD--------------- 140 (169)
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccC---HHHHHHHHH---------------
Confidence 9999999886 66777777877665432 2578999999999986543321 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++++++|.+.+
T Consensus 141 ----------------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 ----------------AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ----------------HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 112468999999999 999999998754
No 106
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=2e-24 Score=167.13 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=122.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|+|||||++++.++.++....++. +.+........++..+.+.+||++|++.+......+++++|++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii 77 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI---GIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII 77 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS---SEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988765544433 233333444456777899999999999999889999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|||.++. ++++.+..|+..+..... .+.|+++|+||.|+.... ..++..+...
T Consensus 78 ~fd~~~~-~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~--------------------- 132 (162)
T PF00071_consen 78 VFDVTDE-ESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAK--------------------- 132 (162)
T ss_dssp EEETTBH-HHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHH---------------------
T ss_pred ccccccc-cccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHH---------------------
Confidence 9999987 789999999998887632 468999999999998633 2332222221
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|. +.+++..+.+.+
T Consensus 133 ---------------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 133 ---------------ELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ---------------HTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ---------------HhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 123789999999999 999887776653
No 107
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=154.93 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=134.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+..+|+++|..++||||++.+|..+.. ...+++++ +.+..+. .+++.+++||.+|++..++.|++|+.++
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG-----FnvetVt--ykN~kfNvwdvGGqd~iRplWrhYy~gt 85 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG-----FNVETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGT 85 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-cccccccc-----eeEEEEE--eeeeEEeeeeccCchhhhHHHHhhccCC
Confidence 46789999999999999999999998762 22333332 3333333 3447899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
.++|||+|+.+. +.+++....++.++..... ...|++|.+||.|+..+..+.++.+.++-.- +
T Consensus 86 qglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A~~pqei~d~leLe~--~------------ 148 (180)
T KOG0071|consen 86 QGLIFVVDSADR-DRIEEARNELHRIINDREM--RDAIILILANKQDLPDAMKPQEIQDKLELER--I------------ 148 (180)
T ss_pred ceEEEEEeccch-hhHHHHHHHHHHHhCCHhh--hcceEEEEecCcccccccCHHHHHHHhcccc--c------------
Confidence 999999999987 7899999999999987654 6889999999999999999988877665211 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
-..++-+.++||.+|+ +.+-+.||.+.+++
T Consensus 149 -----------------r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 149 -----------------RDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred -----------------cCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 0457788999999999 99999999998764
No 108
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.92 E-value=6.7e-25 Score=169.64 Aligned_cols=174 Identities=48% Similarity=0.691 Sum_probs=117.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHh---hhcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDE---FLPQ 139 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~~~~ 139 (267)
+...|+++|+.|+|||+|+.+|..+.. ..+.+++.++.. ... -......+.++|+|||.+.+..... +...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~-~~T~tS~e~n~~---~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKT-VPTVTSMENNIA---YNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS----B---SSEEEE---CCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCc-CCeeccccCCce---EEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 345899999999999999999999864 334444533221 111 1233457999999999999886555 4888
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc-cc-
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV-SE- 217 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~- 217 (267)
+.+||||+|++.....+....++|++++..........|++|++||+|+..+.+...+++.++++++.++..+++. ..
T Consensus 76 ~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr~tr~~~l~~~ 155 (181)
T PF09439_consen 76 AKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLRKTRSKSLESV 155 (181)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred CCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999864356888999999998876555688999999999999999999999999999999999998873 22
Q ss_pred -ccccccccCCCCCCCccccccccee
Q 024474 218 -ADVTNDFTLGIPGQAFSFSQCHNKV 242 (267)
Q Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (267)
.+......++..+.+|.|++++++|
T Consensus 156 d~~~~~~~~lg~~g~~F~F~~L~~~V 181 (181)
T PF09439_consen 156 DEDDDENEFLGKEGEDFTFEQLENNV 181 (181)
T ss_dssp --------TTS-TTS---GGGSSS-E
T ss_pred ccccccccccCCCCCCcchhhccCCC
Confidence 2223446788889999999988764
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.92 E-value=3.9e-24 Score=172.79 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=116.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|+++.+.. ..++. +.++......+++..+.+.+|||||++++..++..+++.+|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTI---GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCc---eeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 346799999999999999999999876532 11111 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .++..+..++...+.... ...+.|+++|+||+|+....... .+.......
T Consensus 88 ~~vlv~D~~~~-~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~~--------------- 148 (211)
T PLN03118 88 GIILVYDVTRR-ETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVS--REEGMALAK--------------- 148 (211)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------
Confidence 99999999987 677777664433333211 12568999999999997543321 011111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 149 -----------------~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 149 -----------------EHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=4.4e-24 Score=163.81 Aligned_cols=156 Identities=24% Similarity=0.349 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.+..+.....++... ++.......++....+.+||+||+..+......+++++|+++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGV---DFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceee---eeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999998765543333322 222222233445578999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+.... ..++.. +...
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~---------------- 133 (159)
T cd00154 78 LVYDITNR-ESFENLDKWLKELKEYA---PENIPIILVGNKIDLEDQRQVSTEEAQ----QFAK---------------- 133 (159)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccccccccccHHHHH----HHHH----------------
Confidence 99999986 67888888888777643 1578999999999996222 222222 1111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..++.++++||++|+ ++++++||.+
T Consensus 134 ----------------~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 134 ----------------ENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ----------------HcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 124579999999999 9999999863
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.92 E-value=3e-24 Score=168.12 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=90.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|++|+|||||++++.++.+..... ++..+.......+++..+.+++|||||+.++...+..+++++|++|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i 76 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYV----PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL 76 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence 489999999999999999999877644333 2222222223344566678999999999999988888999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||+++. .+++... .|+..+... ..+.|+++|+||+|+...
T Consensus 77 ~v~d~~~~-~sf~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 77 LCFSVVNP-SSFQNISEKWIPEIRKH----NPKAPIILVGTQADLRTD 119 (173)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhhccC
Confidence 99999987 6787775 566666542 256899999999998643
No 112
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=4.6e-24 Score=167.02 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=114.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.....++.. ........+++..+.+.+|||||+..+...+..+++.+|+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 76 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF----DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 76 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee----eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence 4899999999999999999999887544433321 111122334566678999999999999888888999999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|.++. .+++... .|+..+... ..+.|+++|+||+|+.+............. ..++..+..
T Consensus 77 lv~~~~~~-~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~v~~~~~~-- 140 (174)
T cd04135 77 ICFSVVNP-ASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDPKTLARLNDMKE---------KPVTVEQGQ-- 140 (174)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcChhhHHHHhhccC---------CCCCHHHHH--
Confidence 99999987 6777775 455444432 368999999999998654322111100000 000000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+...|++|||++|+ ++++++.+.+.+
T Consensus 141 ----------~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 141 ----------KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ----------HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 01111223468999999999 999999887654
No 113
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.92 E-value=4.2e-24 Score=167.44 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|||||||++++.++.+...+.++... .+ .....+++..+.+.+|||||++++...+..+++++|+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~---~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE---NY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc---ce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 58999999999999999999998875544333321 11 122334566678999999999998888878899999999
Q ss_pred EEEeCCCCCCchHHHHH-HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+|+|+++. .+++.... |+..+... ..+.|+++|+||+|+........ .+.. . ....+...+.
T Consensus 78 ~v~~~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~---~i~~----~--~~~~v~~~~~--- 140 (175)
T cd01870 78 MCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDEHTRR---ELAK----M--KQEPVKPEEG--- 140 (175)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccChhhhh---hhhh----c--cCCCccHHHH---
Confidence 99999986 56776654 55555432 25789999999999864322111 0100 0 0000000000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+...+++|||++|. +++++++|.+.+
T Consensus 141 ---------~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 141 ---------RDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ---------HHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 001111223479999999999 999999998754
No 114
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.92 E-value=3e-24 Score=166.76 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccCCEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQAAGIV 144 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~d~ii 144 (267)
||+++|++|+|||||+++++.+.+.....++ ..........+++..+.+++|||||+.. +......+++.+|++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPN----LESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCC----hHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence 5899999999999999999987653332222 2111122233456667899999999985 3456778899999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .+++.+..|+..+..... ...+.|+++|+||+|+........ +...+...
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~------------------ 134 (165)
T cd04146 77 LVYSITDR-SSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVST--EEGEKLAS------------------ 134 (165)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCH--HHHHHHHH------------------
Confidence 99999987 778888887766655321 125799999999999864332111 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccC-c-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++| + +++++++|.+.+
T Consensus 135 --------------~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 135 --------------ELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --------------HcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11247999999999 5 999999998764
No 115
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=6.5e-24 Score=168.93 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCEEEEEcCCCCCHHHHHH-HHHcCCcccc-eeeeeccccc---eeEee-------cccCCCccccEEEEeCCCCCCchh
Q 024474 64 STTIVLAGLSGSGKTVLFY-QLRDGSTHQG-TVTSMEPNED---TFVLH-------SESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~-~l~~~~~~~~-~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
.+||+++|.+|||||||+. ++.++.+... ....+.|+.. .+... ...+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999996 5655443211 1122333321 12111 113467778999999999875 3
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....+++++|++|+|||+++. .+++.+. .|+..+.... .+.|+++|+||+||..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~-~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASP-NSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCCh-hHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 455688999999999999987 7888886 4777765532 4789999999999964
No 116
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.92 E-value=4.2e-24 Score=173.51 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeeccccc-eeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc-cCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNED-TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP-QAA 141 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~d 141 (267)
+||+++|++|+|||||++++..+.+. .. +.++.. ++......+++....+.+|||||++ ......+++ .+|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~----~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad 74 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA----YDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGD 74 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccC----cCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCC
Confidence 48999999999999999999887653 22 222221 2333334445666789999999988 233345566 899
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +...+...
T Consensus 75 ~iilV~d~td~-~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~~~v~~--~~~~~~a~--------------- 134 (221)
T cd04148 75 AFVVVYSVTDR-SSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARSREVSV--QEGRACAV--------------- 134 (221)
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhccccceecH--HHHHHHHH---------------
Confidence 99999999997 678888888877766422 25799999999999965432211 00111000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|. ++++++||.+.+
T Consensus 135 -----------------~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 135 -----------------VFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred -----------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998765
No 117
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=5.3e-24 Score=166.54 Aligned_cols=163 Identities=20% Similarity=0.380 Sum_probs=116.4
Q ss_pred HhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhh
Q 024474 58 VFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL 137 (267)
Q Consensus 58 ~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 137 (267)
.....+.++|+++|++|+|||||++++.+..+.. ..++.+ +.......+ +..+.+|||||+..+...+..++
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~~~t~g-~~~~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~ 79 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-----ITPTQG-FNIKTVQSD--GFKLNVWDIGGQRAIRPYWRNYF 79 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-----cCCCCC-cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHh
Confidence 3345668899999999999999999999875421 122211 111122222 35789999999998888888999
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+++. .++.....++..++.... ..++|+++++||+|+......+++.+.+.
T Consensus 80 ~~~~~ii~v~D~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~i~~~l~--------------- 141 (173)
T cd04155 80 ENTDCLIYVIDSADK-KRLEEAGAELVELLEEEK--LAGVPVLVFANKQDLATAAPAEEIAEALN--------------- 141 (173)
T ss_pred cCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECCCCccCCCHHHHHHHcC---------------
Confidence 999999999999985 567777777777765432 25799999999999976544433222111
Q ss_pred ccccccccCCCCCCCccccc-ccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 218 ADVTNDFTLGIPGQAFSFSQ-CHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+ ....+.++++||++|+ ++++++||.+
T Consensus 142 -----------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 -----------------LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -----------------CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 000 0234568899999999 9999999975
No 118
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=6.7e-24 Score=165.47 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=111.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||+++|+++.+.....++.. ..........+..+.+++|||||+.++......+++.+|+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i 76 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF----DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL 76 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee----eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence 4899999999999999999999876433333221 112222233466678999999999988777778889999999
Q ss_pred EEEeCCCCCCchHHHHH-HHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH---------HHHHHHHHHHHHhhhhc
Q 024474 145 FVVDALEFLPNCSAASE-YLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---------RKQMEKEIDKLRASRSA 214 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~---------~~~l~~~~~~~~~~~~~ 214 (267)
+|||+++. .++..... |+..+... ..+.|+++|+||+|+......... .+...+
T Consensus 77 ~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~----------- 140 (171)
T cd00157 77 ICFSVDSP-SSFENVKTKWIPEIRHY----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK----------- 140 (171)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhh----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHH-----------
Confidence 99999986 55665544 55444442 257999999999998765433211 000000
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
+....+...|+++||++|+ +++++++|.+
T Consensus 141 --------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 --------------------LAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred --------------------HHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1111233479999999999 9999999875
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=1.1e-23 Score=161.64 Aligned_cols=156 Identities=27% Similarity=0.330 Sum_probs=113.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
|+++|++|||||||+++|.+..+.....++...... ... ...+.+.+|||||+..++..+..+++.+|++++|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-----~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-----KVT--KGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-----EEE--ECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 789999999999999999998775544443322111 111 1226799999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccC
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTL 226 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
+|+++. .++.....++..+..... ..++|+++|+||+|+.......++.+.+.. .
T Consensus 75 ~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~--~-------------------- 129 (159)
T cd04159 75 VDAADR-TALEAAKNELHDLLEKPS--LEGIPLLVLGNKNDLPGALSVDELIEQMNL--K-------------------- 129 (159)
T ss_pred EECCCH-HHHHHHHHHHHHHHcChh--hcCCCEEEEEeCccccCCcCHHHHHHHhCc--c--------------------
Confidence 999986 556677777777765432 257899999999998765443222111100 0
Q ss_pred CCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 227 GIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
......+.++++||++|. ++++++||.+
T Consensus 130 ---------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 ---------SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 000234678999999999 9999999975
No 120
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=2.4e-23 Score=163.69 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC--c-----ccceeeeecc---ccceeEe-----ecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS--T-----HQGTVTSMEP---NEDTFVL-----HSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~--~-----~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
++|+++|++|+|||||+++|++.. + ......+... .+.++.. .....++..+.+++|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998732 1 1111111100 0111111 11111445678999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
...+..+++.+|++|+|+|++++ .+......|. .... .++|+++|+||+|+.... .....+.+.+.+.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~-~~~~~~~~~~-~~~~------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~--- 148 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQG-VEAQTLANFY-LALE------NNLEIIPVINKIDLPSAD-PERVKQQIEDVLG--- 148 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCC-ccHhhHHHHH-HHHH------cCCCEEEEEECCCCCcCC-HHHHHHHHHHHhC---
Confidence 99999999999999999999875 3333333332 2222 568999999999986432 2222222211100
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.+++
T Consensus 149 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 149 -----------------------------LDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred -----------------------------CCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 011248999999999 99999999998764
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.91 E-value=9e-24 Score=162.74 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+++|++|||||||++++++..+.....+ +...........++..+.+++||+||+..+......+++.+|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 76 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP----TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL 76 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC----ChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 689999999999999999998765433322 2222222233334556789999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|+++. .++.....++..+..... ..+.|+++|+||+|+....... .+.......
T Consensus 77 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~------------------- 132 (160)
T cd00876 77 VYSITDR-ESFEEIKGYREQILRVKD--DEDIPIVLVGNKCDLENERQVS--KEEGKALAK------------------- 132 (160)
T ss_pred EEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCcccccceec--HHHHHHHHH-------------------
Confidence 9999986 678888888877776432 1579999999999987632211 111111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++++++|.+++
T Consensus 133 -------------~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 133 -------------EWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred -------------HcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 112468999999999 999999998764
No 122
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.91 E-value=1.4e-23 Score=165.28 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=116.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.||+++|++|+|||||++++.+..+.....++... ........++..+.+++|||||+.++...+..++..+|+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 77 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN----TFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI 77 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh----hEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence 58999999999999999999987764333332211 11122233445578899999999999988999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|.++. .+++....++..+++... ..+.|+++|+||+|+........ +......+
T Consensus 78 ~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~--~~~~~~~~------------------ 134 (180)
T cd04137 78 LVYSVTSR-KSFEVVKVIYDKILDMLG--KESVPIVLVGNKSDLHTQRQVST--EEGKELAE------------------ 134 (180)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEEchhhhhcCccCH--HHHHHHHH------------------
Confidence 99999987 678888888888776432 25789999999999864321110 11111111
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ ++++++||.+.+
T Consensus 135 --------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 135 --------------SWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred --------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998754
No 123
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=2.2e-23 Score=184.21 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCchHHH---HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPPTQLY---IACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l 84 (267)
.....|++. +.+.+++.+||.++..+.... +..+...+..++... +....+++++|+++|++|+|||||+|+|
T Consensus 145 ~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L 223 (442)
T TIGR00450 145 QKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNAL 223 (442)
T ss_pred HHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHH
Confidence 344445544 577778888888764332221 333344444444444 3344567899999999999999999999
Q ss_pred HcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH--------HhhhccCCEEEEEEeCCCCCCch
Q 024474 85 RDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL--------DEFLPQAAGIVFVVDALEFLPNC 156 (267)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~~~~ 156 (267)
++... ..++.+++++.++......+++ ..+++|||||+.++.... ..+++.+|++++|+|++++ .+.
T Consensus 224 ~~~~~--aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~-~s~ 298 (442)
T TIGR00450 224 LKQDR--AIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP-LTK 298 (442)
T ss_pred hCCCC--cccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC-CCh
Confidence 98642 1233344444444333333344 578999999997655432 3578899999999999886 344
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 157 SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+.. |+..+.. .++|+++|+||+|+...
T Consensus 299 ~~~--~l~~~~~------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 299 DDF--LIIDLNK------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred hHH--HHHHHhh------CCCCEEEEEECccCCCc
Confidence 433 5554432 57899999999999643
No 124
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=4.1e-24 Score=154.75 Aligned_cols=164 Identities=25% Similarity=0.313 Sum_probs=131.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
..+..+.++|..++|||||+|.+..+.+.+..+++.+.+. ..+....+.+.+||.||+..|+.+|+.|++.++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm-------rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~ 90 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM-------RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVS 90 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccccee-------EEeccCceEEEEEecCCCccHHHHHHHHhhcCc
Confidence 3566899999999999999999988776555444443221 122334478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++||+|++++ +.++.....+..++....+ .++|++|.+||.|+.++.....+.+.+.- ++
T Consensus 91 aivY~VDaad~-~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~AL~~~~li~rmgL---------~s------- 151 (186)
T KOG0075|consen 91 AIVYVVDAADP-DKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGALSKIALIERMGL---------SS------- 151 (186)
T ss_pred EEEEEeecCCc-ccchhhHHHHHHHhcchhh--cCCcEEEecccccCcccccHHHHHHHhCc---------cc-------
Confidence 99999999996 7899999999999987754 89999999999999988777655544331 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
--...+-++.+|++... |+...+||.+|-+
T Consensus 152 ---------------itdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 152 ---------------ITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ---------------cccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 01456788999999999 9999999999854
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=5.8e-23 Score=159.82 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~ 135 (267)
++|+++|++|+|||||+|+|.+..+... ..+.++........ ......+++|||||+.+.. .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA---PYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC---CCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 4899999999999999999999765321 11111222222222 2234689999999984311 01111
Q ss_pred hhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 136 FLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
....+|++|+|+|+++... +......|+..+... ..+.|+++|+||+|+.......+ .++. .
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~----~~~~-~-------- 138 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL----FKNKPVIVVLNKIDLLTFEDLSE----IEEE-E-------- 138 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh----cCcCCeEEEEEccccCchhhHHH----HHHh-h--------
Confidence 1223689999999987522 345555666665432 14789999999999975432221 1110 0
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...+.++++||++|+ ++++++||.+.+
T Consensus 139 ----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 ----------------------E-LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ----------------------h-hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 0 224578999999999 999999998875
No 126
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=2.5e-23 Score=184.83 Aligned_cols=201 Identities=22% Similarity=0.257 Sum_probs=131.5
Q ss_pred CCcchhhhHHH---HHHHHHHHHHhhhcCCch--H----HHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHH
Q 024474 9 LPEGMEQWKKE---LEEWLNRGIEFINQIPPT--Q----LYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTV 79 (267)
Q Consensus 9 l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSs 79 (267)
|+.....|++. +.+.+++.+||.++..+. . ..+..+...+..+.....+..+.+.+++|+++|.+|+||||
T Consensus 151 l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSS 230 (449)
T PRK05291 151 LSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSS 230 (449)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHH
Confidence 45566667665 456666778886654211 1 11444455555555444444455678999999999999999
Q ss_pred HHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH--------HhhhccCCEEEEEEeCCC
Q 024474 80 LFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL--------DEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 80 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~d~ii~v~d~~~ 151 (267)
|+|+|++... ..++...+++.++......+++ ..+.+|||||+.++.... ..+++.+|++++|+|+++
T Consensus 231 Lln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 231 LLNALLGEER--AIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred HHHHHhCCCC--cccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 9999998653 1223333334433333333333 578999999987654432 246789999999999988
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCC
Q 024474 152 FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQ 231 (267)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (267)
+ .+.+.... +.. ..+.|+++|+||+|+....... .
T Consensus 307 ~-~s~~~~~~-l~~--------~~~~piiiV~NK~DL~~~~~~~----------~------------------------- 341 (449)
T PRK05291 307 P-LTEEDDEI-LEE--------LKDKPVIVVLNKADLTGEIDLE----------E------------------------- 341 (449)
T ss_pred C-CChhHHHH-HHh--------cCCCCcEEEEEhhhccccchhh----------h-------------------------
Confidence 6 34443222 222 1578999999999996432211 0
Q ss_pred CcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 232 AFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 232 ~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++|+++|.+.+
T Consensus 342 -------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 342 -------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 112358999999999 999999998865
No 127
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-23 Score=150.90 Aligned_cols=152 Identities=20% Similarity=0.273 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-.+|.+++|+.|+|||+|+++++..+|......++. ..+......+.+..+++++|||+|+++|+...+.|++++.+
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtig---vefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG---VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccc---eecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 346899999999999999999999888655555553 33444444557888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
.++|+|++.. +...++..|+.+..... .++..+++++||.||...+++ ++.++
T Consensus 87 almvyditrr-stynhlsswl~dar~lt---npnt~i~lignkadle~qrdv~yeeak~--------------------- 141 (215)
T KOG0097|consen 87 ALMVYDITRR-STYNHLSSWLTDARNLT---NPNTVIFLIGNKADLESQRDVTYEEAKE--------------------- 141 (215)
T ss_pred eeEEEEehhh-hhhhhHHHHHhhhhccC---CCceEEEEecchhhhhhcccCcHHHHHH---------------------
Confidence 9999999987 77899999998876543 377889999999999876543 22221
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
|.+ .+...|+++||++|+ +++.
T Consensus 142 --------------fae-engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 142 --------------FAE-ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred --------------HHh-hcCeEEEEecccccCcHHHH
Confidence 111 456789999999999 7654
No 128
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=8.7e-23 Score=157.95 Aligned_cols=158 Identities=21% Similarity=0.183 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.|+++|++|+|||||+++|++... ......+. +............ ...+++|||||++++......+++.+|+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~---t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGI---TIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCc---eEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 689999999999999999986431 11100000 1111111112221 3589999999999887777788899999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. ........+.. +.. ....|+++|+||+|+..........+.+.+.+...
T Consensus 78 ii~V~d~~~~--~~~~~~~~~~~-~~~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------------- 136 (164)
T cd04171 78 VLLVVAADEG--IMPQTREHLEI-LEL----LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT-------------- 136 (164)
T ss_pred EEEEEECCCC--ccHhHHHHHHH-HHH----hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999873 12222222222 221 12248999999999975321122222222222110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
. ....+++++||++|+ +++++++|.+
T Consensus 137 --------------~-~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 137 --------------F-LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred --------------C-cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 123578999999999 9999998865
No 129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=7.8e-23 Score=162.11 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
.|++++|++|+|||||++++..+.+.....+ +...........++....+.+|||+|+..+......+++.+|+++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l 77 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP----TVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL 77 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence 4899999999999999999987765432222 222222222233555577899999999888776667889999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH---HHHH-HHHHHHHHhhhhcccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI---RKQM-EKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~ 219 (267)
+|+|.++. ++++.+. .|+..+.... .++|+++|+||+|+.......+. .... ......
T Consensus 78 lv~~i~~~-~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (187)
T cd04129 78 IGFAVDTP-DSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR------------ 140 (187)
T ss_pred EEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH------------
Confidence 99999886 6788776 4666665432 56999999999998543211000 0000 000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+....+...|++|||++|+ ++++++++.+.+
T Consensus 141 ---------------~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 141 ---------------VAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ---------------HHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 0000122368999999999 999999998653
No 130
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=164.85 Aligned_cols=172 Identities=20% Similarity=0.206 Sum_probs=132.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCccc
Q 024474 12 GMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (267)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~ 91 (267)
...+..+-.|++++|..+++.+..++..++..++..++.++.+ +...+.|+|+|.||||||||++.+++.+.
T Consensus 122 ~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~I------dp~~pTivVaG~PNVGKSSlv~~lT~Akp-- 193 (346)
T COG1084 122 DPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAI------DPDLPTIVVAGYPNVGKSSLVRKLTTAKP-- 193 (346)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC------CCCCCeEEEecCCCCcHHHHHHHHhcCCC--
Confidence 3455556668999999999999999999999999999999976 77899999999999999999999999764
Q ss_pred ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-----HH----hhhc-cCCEEEEEEeCCCCC-CchHHHH
Q 024474 92 GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-----LD----EFLP-QAAGIVFVVDALEFL-PNCSAAS 160 (267)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-----~~----~~~~-~~d~ii~v~d~~~~~-~~~~~~~ 160 (267)
.+.+++.|+....+... +....+++++||||.-+ +++ .+ ..++ -.++|+|++|++..+ -+.+.+.
T Consensus 194 -EvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLD-RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~ 269 (346)
T COG1084 194 -EVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLD-RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI 269 (346)
T ss_pred -ccCCCCccccceeEeee--ecCCceEEEecCCcccC-CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH
Confidence 56667776665554433 44446899999999765 222 11 1222 368999999998742 3678888
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHH
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQ 200 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 200 (267)
..+.++... .+.|+++|+||+|..+....+++...
T Consensus 270 ~L~~eIk~~-----f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 270 SLLEEIKEL-----FKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred HHHHHHHHh-----cCCCeEEEEecccccchhHHHHHHHH
Confidence 888888764 55899999999999866555444433
No 131
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=1.3e-22 Score=164.33 Aligned_cols=161 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+|++++|++|||||||+++++.+.+...+.++... .+.......++..+.+++|||+|+.++...+..+++.+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV---EVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 346689999999999999999988877765444444432 22222222355668999999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+.......+..+ ...
T Consensus 83 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~~~~~~----~~~-------------- 139 (215)
T PTZ00132 83 QCAIIMFDVTSR-ITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVKARQIT----FHR-------------- 139 (215)
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCCHHHHH----HHH--------------
Confidence 999999999987 67888888888876542 5689999999999864322111110 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++.+.||.+.+
T Consensus 140 ------------------~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 140 ------------------KKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999887654
No 132
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=7.8e-24 Score=155.22 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.-.+|++++|..-+|||||+-+++.++|.....++.... +......+.+....+.||||+|+++|..+-+-|+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQAS---F~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQAS---FQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHH---HhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 345799999999999999999999999988777766433 44444555667778999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|||+++. ++|+..+.|..++..-. ...+.+++|+||+||...+.+... ..+...+
T Consensus 88 GalLVyDITDr-dSFqKVKnWV~Elr~ml---Gnei~l~IVGNKiDLEeeR~Vt~q--eAe~YAe--------------- 146 (218)
T KOG0088|consen 88 GALLVYDITDR-DSFQKVKNWVLELRTML---GNEIELLIVGNKIDLEEERQVTRQ--EAEAYAE--------------- 146 (218)
T ss_pred ceEEEEeccch-HHHHHHHHHHHHHHHHh---CCeeEEEEecCcccHHHhhhhhHH--HHHHHHH---------------
Confidence 99999999998 89999999999987742 367889999999999765543211 1111111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-....|.++||+.+. |.+|++.|...
T Consensus 147 -----------------svGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 147 -----------------SVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred -----------------hhchhheecccccccCHHHHHHHHHHH
Confidence 113368999999999 99999888654
No 133
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2.2e-22 Score=156.40 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=105.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+.|+++|++|+|||||+++|....+......+. +........... +....+.+|||||+..+...+..++..+|++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~i 77 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGI---TQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIA 77 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCe---EEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEE
Confidence 369999999999999999999877543211111 111111111111 1346899999999999888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. . .......+..+ . ..++|+++|+||+|+.... .+...+.+. .+....
T Consensus 78 l~v~d~~~~-~-~~~~~~~~~~~-~-----~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~----~~~~~~----------- 133 (168)
T cd01887 78 ILVVAADDG-V-MPQTIEAIKLA-K-----AANVPFIVALNKIDKPNAN-PERVKNELS----ELGLQG----------- 133 (168)
T ss_pred EEEEECCCC-c-cHHHHHHHHHH-H-----HcCCCEEEEEEceeccccc-HHHHHHHHH----Hhhccc-----------
Confidence 999999875 2 22222222222 2 1578999999999986432 222222221 110000
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.......+.++++||++|+ ++++++||.++.+
T Consensus 134 -----------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 134 -----------EDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred -----------cccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 0001234579999999999 9999999988653
No 134
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=6.7e-23 Score=151.10 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=122.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
.++++++|++-+|||||+..++.+++..-..+++ +.++....... .|..+++++|||+|+++|++....|++++-+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv---gvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV---GVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc---chHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 4689999999999999999999998865433333 33333222222 6777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|||.++. .++++...|+.+...+.. .+.++-+.+|++|+||...+.+. .++.++...
T Consensus 85 vllvyditnr-~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~SqRqVt--~EEaEklAa---------------- 144 (213)
T KOG0091|consen 85 VLLVYDITNR-ESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQRQVT--AEEAEKLAA---------------- 144 (213)
T ss_pred eEEEEeccch-hhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhhcccc--HHHHHHHHH----------------
Confidence 9999999998 799999999999876543 13455678999999998655432 111111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+..|+|+||++|. +++-+.-|.+
T Consensus 145 ----------------~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 145 ----------------SHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ----------------hcCceEEEecccCCCcHHHHHHHHHH
Confidence 445689999999999 8887766654
No 135
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=2.4e-22 Score=168.09 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHHhhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLDEFL 137 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~~~~ 137 (267)
+|+++|.||||||||+|+|++.++. .++..+.++.. ........+ ...+.+|||||+.+... ....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~-~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRN-RISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccC-cEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 6999999999999999999997642 12222222222 222111122 24799999999864321 133567
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
..+|++++|+|+++. .+.. .++...+.. .+.|+++|+||+|+... ....+.+......
T Consensus 78 ~~aDvvl~VvD~~~~-~~~~---~~i~~~l~~-----~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~---------- 135 (270)
T TIGR00436 78 GGVDLILFVVDSDQW-NGDG---EFVLTKLQN-----LKRPVVLTRNKLDNKFK---DKLLPLIDKYAIL---------- 135 (270)
T ss_pred hhCCEEEEEEECCCC-CchH---HHHHHHHHh-----cCCCEEEEEECeeCCCH---HHHHHHHHHHHhh----------
Confidence 899999999999885 3332 333333332 57899999999999632 2222111111000
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.++|
T Consensus 136 ---------------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 136 ---------------------EDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred ---------------------cCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 111158999999999 99999999998864
No 136
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.6e-22 Score=158.92 Aligned_cols=176 Identities=21% Similarity=0.236 Sum_probs=112.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeec-----------cccceeEeecccCCCccccEEEEeCCCCCCchhhHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME-----------PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
+|+++|.+|+|||||+|+|++............ ..+.+..............+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999988765332211110 000111111111122235799999999998888899
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|+.++. . .....++..... .+.|+++|+||+|+..........+.+.+.++........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~-~-~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGV-Q-PQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCC-c-HHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 9999999999999998752 1 222233333222 5789999999999986444444444444433322100000
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+ + ......++++||++|. +++++++|.+.++|
T Consensus 153 ---------------~~~~-~--~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 153 ---------------EEGT-R--NGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred ---------------hhhc-c--cCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 0000 0 0235679999999999 99999999999876
No 137
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=6.1e-22 Score=170.47 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=98.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-C-chhhHH------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-R-LRPKLD------ 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~-~~~~~~------ 134 (267)
..++|+++|.+|+|||||+|+|++..+ .+.....++.+.......+.+ +..+.+|||||+. + .....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~---~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV---YAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce---eeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH
Confidence 558999999999999999999998753 112222222222222222222 2479999999982 2 111112
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..+..+|++++|+|++++ .+......+. .++.... ..++|+++|+||+|+..... + .. ..
T Consensus 264 e~~~~ADlil~VvD~s~~-~~~~~~~~~~-~~L~~l~--~~~~piIlV~NK~Dl~~~~~---v----~~-~~-------- 323 (351)
T TIGR03156 264 EEVREADLLLHVVDASDP-DREEQIEAVE-KVLEELG--AEDIPQLLVYNKIDLLDEPR---I----ER-LE-------- 323 (351)
T ss_pred HHHHhCCEEEEEEECCCC-chHHHHHHHH-HHHHHhc--cCCCCEEEEEEeecCCChHh---H----HH-HH--------
Confidence 247789999999999986 4444443332 3333211 14789999999999964211 1 00 00
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|+ +++|+++|.+++
T Consensus 324 ------------------------~~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 324 ------------------------EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ------------------------hCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 001247899999999 999999998764
No 138
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.8e-22 Score=159.60 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC----ccccee-----eeeccccceeEeecc-------cCCCccccEEEEeCCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS----THQGTV-----TSMEPNEDTFVLHSE-------STKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~l~DtpG~~~ 128 (267)
.+|+++|++|+|||||+++|++.. +..... .+.......+.+... ...+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999998731 111110 111111111111100 0123357899999999876
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
+..........+|++++|+|++++. .......+ . +... .+.|+++|+||+|+......+...+.+.+.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~-~~~~~~~~-~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGI-QTQTAECL-V-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc-cHHHHHHH-H-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 5444445566789999999998752 22221111 1 1221 4579999999999975433333333343333221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.... -..+++++++||++|+ +++|+++|.+.++|
T Consensus 153 ~~~~-------------------------~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 LEKT-------------------------RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHhc-------------------------CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 0000 0124579999999999 99999999998775
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=6.1e-22 Score=154.32 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----chhhHH---hhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----LRPKLD---EFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----~~~~~~---~~~~ 138 (267)
+|+++|.+|||||||+|+|.+.... +...+.++..........++ ...+.+|||||+.+ .+.... ..+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 6899999999999999999976531 11111111111111111122 13799999999742 112222 3345
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
.+|++++|+|+++..++++....|...+..... ...++|+++|+||+|+.+.....+. +......
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~~~~~----------- 142 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDEEELFEL---LKELLKE----------- 142 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCchhhHHH---HHHHHhh-----------
Confidence 699999999999752356666677666654321 1247899999999999765433221 1111110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....++++||++|. ++++++||.+.+
T Consensus 143 --------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 143 --------------------LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred --------------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 013468999999999 999999998753
No 140
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=5e-22 Score=158.38 Aligned_cols=119 Identities=23% Similarity=0.304 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--CCccccee-----eee---c-cccceeEeecccCCCccccEEEEeCCCCCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TSM---E-PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~-----~~~---~-~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 133 (267)
++|+++|.+|+|||||+++|+. +.+..... .+. . ..+.++......+..+...+++|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999987 44332211 000 0 01111222222233445789999999999999999
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~--~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHhcCEEEEEEECCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCCCCC
Confidence 9999999999999999874 22333333433322 57899999999999753
No 141
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=2.9e-22 Score=163.17 Aligned_cols=159 Identities=25% Similarity=0.340 Sum_probs=114.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD-------- 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-------- 134 (267)
+.-.|+++|.||+|||||+|+|++.+. .++|..++++...+......+ ...+.++||||....+....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 344699999999999999999999876 566666766665555444433 46899999999775544333
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHhhhh
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~~~~~~~~ 213 (267)
..+..+|+++||+|+++. +..-.+++.+.+.. .+.|+++++||+|....... ....+.+..
T Consensus 81 ~sl~dvDlilfvvd~~~~---~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~---------- 142 (298)
T COG1159 81 SALKDVDLILFVVDADEG---WGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---------- 142 (298)
T ss_pred HHhccCcEEEEEEecccc---CCccHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHh----------
Confidence 356789999999999985 33345555555542 46899999999998866542 111111111
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
......++++||++|. ++.|.+.|.+++++
T Consensus 143 ------------------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 143 ------------------------LLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ------------------------hCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 0222378999999999 99999999999864
No 142
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=6.2e-22 Score=170.13 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-hhh-------H
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-RPK-------L 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~-------~ 133 (267)
.+..+|+++|.+|||||||+|+|++..+. .++....++..........++ ..+.+|||||+.+. ..+ .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 35569999999999999999999987652 111111112222222222233 57899999998542 221 1
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..++..+|++++|+|+.+. +.....++.+.+.. .+.|+++|+||+|+... ...+ +.+.+...
T Consensus 126 ~~~l~~aDvil~VvD~~~s---~~~~~~~il~~l~~-----~~~p~IlViNKiDl~~~-~~~~----~~~~l~~~----- 187 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKS---FDDITHNILDKLRS-----LNIVPIFLLNKIDIESK-YLND----IKAFLTEN----- 187 (339)
T ss_pred HHHhhhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEhhcCccc-cHHH----HHHHHHhc-----
Confidence 1347799999999998764 44444444443332 45678899999998642 2211 11111110
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ ++++++||.+++++
T Consensus 188 -------------------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 -------------------------HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred -------------------------CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 112468999999999 99999999998874
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=1.3e-22 Score=153.66 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=99.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------HHhhh-
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------LDEFL- 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~- 137 (267)
++|+++|.||+|||||+|+|++.+. .+...+.++.+.........+ ..+.++|+||.-+..+. ...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~---~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ---KVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE---EEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---eecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHh
Confidence 4899999999999999999999874 556666666655544444334 58999999996544322 33444
Q ss_pred -ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 138 -PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 138 -~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
...|++++|+|++. ++.....+.++++ .++|+++|+||+|+..........+.+.+
T Consensus 76 ~~~~D~ii~VvDa~~----l~r~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------------- 132 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN----LERNLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSE------------- 132 (156)
T ss_dssp HTSSSEEEEEEEGGG----HHHHHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHH-------------
T ss_pred hcCCCEEEEECCCCC----HHHHHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHH-------------
Confidence 57999999999987 3444445555554 78999999999998654432222233332
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHH
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFI 261 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l 261 (267)
..+++++++||++|+ +++|++.|
T Consensus 133 ----------------------~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 133 ----------------------RLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----------------------HHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ----------------------HhCCCEEEEEeCCCcCHHHHHhhC
Confidence 234579999999999 99998865
No 144
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.88 E-value=8.4e-22 Score=157.14 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeeccc-----CCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-----TKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.||+++|.+|+|||||++++.++.+.....+++.. ++...... .++..+.+++|||+|+++++.++..++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~---~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ 77 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGC---SVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQ 77 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceee---eEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCc
Confidence 48999999999999999999998876554444432 22222111 23456789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCC----------------CCCCCCcEEEEEecCCCCCC
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNST----------------VVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|++|+|||+++. .+++.+..|+.++..... ....++|+++|+||+|+...
T Consensus 78 ad~iIlVyDvtn~-~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 78 VNGIILVHDLTNR-KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred CCEEEEEEECcCh-HHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999999998 889999999999876321 11247899999999999754
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=4.4e-21 Score=154.12 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--hH----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--KL---- 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~---- 133 (267)
+..++|+++|++|||||||+|++++..+... ..++..+.. ......+. ..+.+|||||+.+... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-----~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~ 112 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-----RRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFR 112 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee-----EEEEecCC-ceEEEeCCCccccCCCHHHHHHHH
Confidence 4568999999999999999999998763211 112222211 11112222 3799999999843211 11
Q ss_pred --HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 134 --DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 134 --~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+..+|++++|+|++++ .+......+.. .+.... ..+.|+++|+||+|+....... ...
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~-~~~~~~~~~~~-~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----------~~~--- 175 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDP-DYEEQIETVEK-VLKELG--AEDIPMILVLNKIDLLDDEELE----------ERL--- 175 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCC-ChhhHHHHHHH-HHHHcC--cCCCCEEEEEEccccCChHHHH----------HHh---
Confidence 1235689999999999886 34444433333 232211 2568999999999996543211 000
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+++++||++|. ++++++||.+++
T Consensus 176 ------------------------~--~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ------------------------E--AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ------------------------h--cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 0 223468999999999 999999998764
No 146
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.2e-23 Score=151.48 Aligned_cols=161 Identities=21% Similarity=0.341 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc--cceeEeecccC----CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--EDTFVLHSEST----KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
|++.+|++|+||||++.+++.+.|....++++... .....++..-. .+..+.+++|||+|+++|+++.-.+++.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 67889999999999999999999987777765332 22222222222 2344789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+-+++++||+++. .++-....|+-++..++.. .+.-+++++||+||.+.+.+.+.. ......
T Consensus 91 AMGFlLiFDlT~e-qSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~q--a~~La~------------- 152 (219)
T KOG0081|consen 91 AMGFLLIFDLTSE-QSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVVSEDQ--AAALAD------------- 152 (219)
T ss_pred hccceEEEeccch-HHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhhhHHH--HHHHHH-------------
Confidence 9999999999986 7899999999999887653 556689999999998665443211 111111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++|||+||-+|. +++-.+.|..
T Consensus 153 -------------------kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 153 -------------------KYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred -------------------HhCCCeeeeccccCcCHHHHHHHHHH
Confidence 335689999999998 6665555443
No 147
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8e-23 Score=152.34 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=132.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 52 LLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 52 ~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
...++........+.++|+|+.++|||||+.++-.... .......+.++ ...+...+.-....+.+||..|++.
T Consensus 5 ~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~t---vgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 5 MSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPT---VGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred HHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecc---cceeecceeeccceeEEEEcCChHH
Confidence 34456666677889999999999999999998754321 11111112221 1222222222235799999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+++|..||..+|++||+||+++. +.++.....+..+..+..+ .+.|+++.+||.|+.+.....++...+.. ....
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~-eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~ 157 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDR-ERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNAMEAAELDGVFGL-AELI 157 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCH-HHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhc
Confidence 999999999999999999999997 6788888888888876543 78999999999999888777776665553 1111
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
-.....|.++||.+|+ |++-.+|+.++++
T Consensus 158 -----------------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 -----------------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred -----------------------------CCccCccccchhhhcccHHHHHHHHHHHHh
Confidence 0344578999999999 9999999988764
No 148
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.1e-21 Score=155.59 Aligned_cols=168 Identities=24% Similarity=0.254 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccce--e-------eeec----cccceeEeecccC--CCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--V-------TSME----PNEDTFVLHSEST--KGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~-------~~~~----~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|+.++|||||+++|+........ . .... ....+........ ......++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4568999999999999999999854311000 0 0000 0000010111111 2444689999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|.......++.+|++|+|+|+.++ ......+.+..+.. .++|+++|+||+|+. .....+..++....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g--~~~~~~~~l~~~~~------~~~p~ivvlNK~D~~----~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDG--IQPQTEEHLKILRE------LGIPIIVVLNKMDLI----EKELEEIIEEIKEK 149 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTB--STHHHHHHHHHHHH------TT-SEEEEEETCTSS----HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccc--cccccccccccccc------cccceEEeeeeccch----hhhHHHHHHHHHHH
Confidence 9998888999999999999999986 12233333433333 788999999999998 22222222222212
Q ss_pred HHhhhhccccccccccccCCCCCCCccccccc--ceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCH--NKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+..... .. ..++++++||++|. +++|+++|.+++|
T Consensus 150 l~~~~~------------------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYG------------------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTT------------------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccc------------------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 200000 01 25789999999999 9999999999987
No 149
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=2.8e-21 Score=165.05 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~~~~~ 137 (267)
..|+++|.||||||||+|+|++... .+..++.++.........+. ....+.+|||||+.+ ....+.+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 4799999999999999999998642 22222222222222222221 224699999999753 223344567
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
++++++++|+|+++. ++++....|..++..... ...++|+++|+||+|+....... .+..+....
T Consensus 235 e~a~vlI~ViD~s~~-~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~~~----------- 299 (335)
T PRK12299 235 ERTRLLLHLVDIEAV-DPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDEEEER--EKRAALELA----------- 299 (335)
T ss_pred hhcCEEEEEEcCCCC-CCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCchhHH--HHHHHHHHH-----------
Confidence 789999999999976 467777777776655321 11468999999999997543221 111111111
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 300 ---------------------~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 300 ---------------------ALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred ---------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998865
No 150
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.87 E-value=4.5e-21 Score=146.75 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=107.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|.+|+|||||++++.+..+.....++. +.+........++..+.+.+|||||+.++...+..+.+.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGT---TRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCc---eeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence 699999999999999999999887433322211 22222222233444468999999999999988888889999999
Q ss_pred EEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 145 FVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
+++|....-.++.... .+...+.... ..+.|+++|+||+|+..... .+...+.+..
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~---------------- 135 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDLRDAKL----KTHVAFLFAK---------------- 135 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccCCcchh----hHHHHHHHhh----------------
Confidence 9999876422333333 5555554432 13789999999999975441 1222222221
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.....++++||++|+ ++++++||.
T Consensus 136 ---------------~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 136 ---------------LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ---------------ccCCceEEeecCCCCCHHHHHHHhh
Confidence 122358999999999 999999986
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=4.7e-21 Score=163.60 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-------hhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-------RPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~~ 137 (267)
..|+++|.||||||||+|+|++... .+..++.++.........+++ ...+++|||||+.+. ...+.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~---~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc---cccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 4799999999999999999998653 222222222222222222222 257999999998532 22334556
Q ss_pred ccCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.++|++++|+|+++.. +.++....|..++..... ...+.|+++|+||+|+......++..+. +.+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~~~~~~~~~~----l~~-------- 300 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDEEELAELLKE----LKK-------- 300 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCChHHHHHHHHH----HHH--------
Confidence 6899999999998641 345555566555543211 1257899999999999754222111111 110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.++
T Consensus 301 -----------------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 301 -----------------------ALGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred -----------------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 112368999999999 9999999998763
No 152
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=8.4e-21 Score=151.43 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
....++|+++|++|+|||||+|+|++..+......+. +.+........ ...+.+|||||+.. +.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~---~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP---GRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC---CceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 4577899999999999999999999875322221111 11111111111 25799999999642 23
Q ss_pred hhHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....+++.+ +++++|+|.+.+ ......++...+.. .+.|+++++||+|+......+...+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHP---LKELDLQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCC---CCHHHHHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 3344555544 678899998764 22222223333332 578999999999997543333333333322221
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
....++++||++|+ +++++++|.+.++|
T Consensus 167 --------------------------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 --------------------------------GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred --------------------------------cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 13468899999999 99999999999986
No 153
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=4.7e-21 Score=147.04 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=95.2
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHHhhhcc
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLDEFLPQ 139 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~~~~~~ 139 (267)
+++|.+|+|||||+|+|.+.... ......+++........... +..+.+|||||+.++.. ....+++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 47999999999999999986421 11122222222222222222 35799999999988654 34456788
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+.+.... ...++.+.+.. .+.|+++|+||+|+...... .+. +..
T Consensus 77 ~d~ii~v~d~~~~~~~---~~~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~---~~~----~~~------------ 129 (157)
T cd01894 77 ADVILFVVDGREGLTP---ADEEIAKYLRK-----SKKPVILVVNKVDNIKEEDE---AAE----FYS------------ 129 (157)
T ss_pred CCEEEEEEeccccCCc---cHHHHHHHHHh-----cCCCEEEEEECcccCChHHH---HHH----HHh------------
Confidence 9999999999864221 12233333332 46899999999999754221 110 110
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...++++||++|+ +++++++|.+++
T Consensus 130 -------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 130 -------------------LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred -------------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 011147899999999 999999998764
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.86 E-value=6e-21 Score=146.78 Aligned_cols=147 Identities=26% Similarity=0.313 Sum_probs=95.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhhhc--cC
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEFLP--QA 140 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~~~--~~ 140 (267)
++|.+|+|||||+|++.+..+.... ...++.........+++ ..+.+|||||+.++.. ....++. .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN---WPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC---CCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCC
Confidence 5899999999999999987532211 11112222222222233 4789999999987654 2455664 89
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .. ...++..+.. .++|+++|+||+|+..........+.+.+
T Consensus 76 d~vi~v~d~~~~-~~---~~~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----------------- 128 (158)
T cd01879 76 DLIVNVVDATNL-ER---NLYLTLQLLE------LGLPVVVALNMIDEAEKRGIKIDLDKLSE----------------- 128 (158)
T ss_pred cEEEEEeeCCcc-hh---HHHHHHHHHH------cCCCEEEEEehhhhcccccchhhHHHHHH-----------------
Confidence 999999999875 22 2233333332 56899999999999765432211111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+..
T Consensus 129 ------------------~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 129 ------------------LLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------------------hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 113468999999999 999999998754
No 155
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=1.7e-20 Score=150.49 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=100.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc--ceee---eeccccceeEee--------------------cccCC--C----
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVT---SMEPNEDTFVLH--------------------SESTK--G---- 113 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~~~---~~~~~~~~~~~~--------------------~~~~~--~---- 113 (267)
.+|+++|+.|+|||||+..|.+..... .... ++......+... ..... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999997642111 1110 111100000000 00000 1
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
....+.+|||||+.++.......+..+|++++|+|++++.. .......+..+ .. ....|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~-~~~t~~~l~~~-~~----~~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP-QPQTSEHLAAL-EI----MGLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC-CcchHHHHHHH-HH----cCCCcEEEEEEchhccCHHH
Confidence 11579999999999888877788888999999999987311 11112222222 11 12347999999999964322
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 194 KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....+.+++.+... ....+.++++||++|+ +++|+++|.+++++
T Consensus 155 ~~~~~~~i~~~~~~~-----------------------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 155 ALENYEQIKKFVKGT-----------------------------IAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHhcc-----------------------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222222222222110 0124568999999999 99999999998763
No 156
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=6.2e-21 Score=151.13 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=124.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++++|.+|+|||+|+.++..+.|...+ .|+..+.......+++..+.+.|+||+|+.++..+.+.+++.+|+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y----~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~g 77 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY----DPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDG 77 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccccc----CCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcE
Confidence 4579999999999999999999999876554 444445555666667888899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH-HHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++||++++. .+++.+..+..++++... ...+|+++|+||+|+...+.+..- -+.+. .
T Consensus 78 F~lVysitd~-~SF~~~~~l~~~I~r~~~--~~~~PivlVGNK~Dl~~~R~V~~eeg~~la---~--------------- 136 (196)
T KOG0395|consen 78 FLLVYSITDR-SSFEEAKQLREQILRVKG--RDDVPIILVGNKCDLERERQVSEEEGKALA---R--------------- 136 (196)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCCEEEEEEcccchhccccCHHHHHHHH---H---------------
Confidence 9999999998 889999999988865432 356899999999999875432111 11110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...+.|+|+||+... +++++.-|..
T Consensus 137 -----------------~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 137 -----------------SWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred -----------------hcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 223459999999998 8888776654
No 157
>PLN00023 GTP-binding protein; Provisional
Probab=99.86 E-value=6.9e-21 Score=159.27 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-------------CCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-------------KGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~DtpG~~~ 128 (267)
...+||+++|..|||||||++++.++.+.....+++.. ++......+ ++..+.++||||+|++.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~---d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGC---TVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceee---eEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 45679999999999999999999998775544444432 222221111 12457899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC---------CCCCcEEEEEecCCCCCC
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV---------KKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~pvivv~nK~Dl~~~ 191 (267)
|+.++..|++++|++|+|||+++. .+++.+..|+.++....... ..++|+++|+||+||...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr-~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQR-RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999997 78999999999887642100 135899999999999654
No 158
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=8.1e-21 Score=143.72 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-----CchhhHHhhhccC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-----RLRPKLDEFLPQA 140 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-----~~~~~~~~~~~~~ 140 (267)
||+++|++|+|||||+|+|.+..+. ..++ .... +.-.+|||||+. .++... ..++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t-~~~~----------~~~~~iDt~G~~~~~~~~~~~~~-~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKT-QAVE----------YNDGAIDTPGEYVENRRLYSALI-VTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccc-eeEE----------EcCeeecCchhhhhhHHHHHHHH-HHhhcC
Confidence 8999999999999999999987642 1111 1111 112689999973 222222 357899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|++++ .++.. ..|. +. ...|+++|+||+|+...... .+..++..+.
T Consensus 64 d~vilv~d~~~~-~s~~~-~~~~-~~--------~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~------------- 116 (142)
T TIGR02528 64 DVIALVQSATDP-ESRFP-PGFA-SI--------FVKPVIGLVTKIDLAEADVD---IERAKELLET------------- 116 (142)
T ss_pred CEEEEEecCCCC-CcCCC-hhHH-Hh--------ccCCeEEEEEeeccCCcccC---HHHHHHHHHH-------------
Confidence 999999999987 33322 2222 21 12499999999999642211 1111111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.+..+++++||++|+ +++++++|.
T Consensus 117 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 117 ------------------AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ------------------cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 111258999999999 999999985
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=3.2e-20 Score=157.15 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh--------hHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP--------KLD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--------~~~ 134 (267)
+...|+++|+||||||||+|+|++..+. ..+..++++........ ......+.+|||||..+... ...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~---~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS---IVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee---ecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 3457999999999999999999987642 22222222222221111 11226899999999865432 223
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..+..+|++++|+|+++. +.....++.+.+.. .+.|+++|+||+|+... ...... .+..+..
T Consensus 80 ~~~~~~D~il~vvd~~~~---~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~--~~~l~~----~~~~l~~---- 141 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEK---IGPGDEFILEKLKK-----VKTPVILVLNKIDLVKD--KEELLP----LLEELSE---- 141 (292)
T ss_pred HHHhcCCEEEEEEeCCCC---CChhHHHHHHHHhh-----cCCCEEEEEECCcCCCC--HHHHHH----HHHHHHh----
Confidence 467789999999999873 22333444444432 46899999999999732 122222 2222110
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
......++++||++|+ +++|+++|.+++++
T Consensus 142 -----------------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 142 -----------------------LMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred -----------------------hCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 0123468999999999 99999999998764
No 160
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.85 E-value=1.3e-22 Score=144.76 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=120.0
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccce-eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEE
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFV 146 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v 146 (267)
+++|.+++|||+|+-++..+.|-.+. ++++ +.++.-.....++..+++++|||+|+++|++....|++.+|+++++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistv---gid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTV---GIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeee---eeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeee
Confidence 36899999999999988777664332 3333 4455555666688889999999999999999999999999999999
Q ss_pred EeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 147 VDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 147 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
||+.+. .+++....|+.++.+.. +....+++++||+|+..++.+. +--+.+.+
T Consensus 78 ydiank-asfdn~~~wlsei~ey~---k~~v~l~llgnk~d~a~er~v~~ddg~kla~---------------------- 131 (192)
T KOG0083|consen 78 YDIANK-ASFDNCQAWLSEIHEYA---KEAVALMLLGNKCDLAHERAVKRDDGEKLAE---------------------- 131 (192)
T ss_pred eecccc-hhHHHHHHHHHHHHHHH---HhhHhHhhhccccccchhhccccchHHHHHH----------------------
Confidence 999997 78999999999988764 3677889999999997654321 11111111
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++|.|+||+||- ++--+-.|.+.+
T Consensus 132 -------------~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 132 -------------AYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred -------------HHCCCceeccccccccHhHHHHHHHHHH
Confidence 345689999999998 776666666543
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.85 E-value=1.8e-20 Score=171.36 Aligned_cols=163 Identities=21% Similarity=0.292 Sum_probs=107.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC-------cccceeeee---ccccceeEeecc-----cCCCccccEEEEeCCCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS-------THQGTVTSM---EPNEDTFVLHSE-----STKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~-------~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~l~DtpG~~~ 128 (267)
.++++++|++++|||||+++|+... +......+. ...+.++..... ..++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111100 000111211111 1145557899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
|...+..+++.+|++|+|+|++++ .+.+....|.. ... .+.|+++|+||+|+.... .+...+.+.+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g-~~~qt~~~~~~-~~~------~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg-- 151 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQG-IEAQTLANVYL-ALE------NDLEIIPVINKIDLPSAD-PERVKKEIEEVIG-- 151 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC-CCHhHHHHHHH-HHH------cCCCEEEEEECcCCCccC-HHHHHHHHHHHhC--
Confidence 999999999999999999999986 33444333332 222 567999999999986432 2222222222110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|. +++|+++|.+.++|
T Consensus 152 ------------------------------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 ------------------------------LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ------------------------------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 001147999999999 99999999988764
No 162
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=4.9e-21 Score=137.95 Aligned_cols=166 Identities=23% Similarity=0.394 Sum_probs=128.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.++|+++|..++||||++..|.+.... . +.|+.+ |.......++ .+++++||.+|+...++.|..|+.+.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~-h----ltpT~G-Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-H----LTPTNG-FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh-h----ccccCC-cceEEEeecC-cEEEEEEecCCccccchhhhhhhhcc
Confidence 467889999999999999999999887532 1 222222 2222333233 26899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|||+|+++. ..++++...+.+++....+ ...|+++..||.|+..+...+++...++-..-+
T Consensus 87 d~lIyVIDS~D~-krfeE~~~el~ELleeeKl--~~vpvlIfankQdlltaa~~eeia~klnl~~lr------------- 150 (185)
T KOG0074|consen 87 DGLIYVIDSTDE-KRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTAAKVEEIALKLNLAGLR------------- 150 (185)
T ss_pred ceEEEEEeCCch-HhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhhcchHHHHHhcchhhhh-------------
Confidence 999999998886 6788888888888876543 789999999999999887777665544321111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+.+.+|||.+++ +..-.+|+.....|
T Consensus 151 ------------------dRswhIq~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 151 ------------------DRSWHIQECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred ------------------hceEEeeeCccccccCccCcchhhhcCCCC
Confidence 346788999999999 88889999887764
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=4.6e-20 Score=162.35 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=96.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhHH------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKLD------ 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~~------ 134 (267)
..++|+++|.+|||||||+|+|++..+. +.....++.+.......+.+. ..+.+|||||+.+ ....++
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~---v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY---AADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee---eccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHH
Confidence 3479999999999999999999987542 111212222222222222221 2688999999843 222333
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
..++.+|++|+|+|++++ ........+ ..++.... ..++|+++|+||+|+...... .+.. .. .
T Consensus 272 ~~~~~ADlIL~VvDaS~~-~~~e~l~~v-~~iL~el~--~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~-----~- 334 (426)
T PRK11058 272 QETRQATLLLHVVDAADV-RVQENIEAV-NTVLEEID--AHEIPTLLVMNKIDMLDDFEP-----RIDR--DE-----E- 334 (426)
T ss_pred HHhhcCCEEEEEEeCCCc-cHHHHHHHH-HHHHHHhc--cCCCCEEEEEEcccCCCchhH-----HHHH--Hh-----c-
Confidence 346789999999999986 434443222 22222211 247899999999999643111 0000 00 0
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
... .++++||++|+ +++|+++|.+.+.
T Consensus 335 ------------------------~~~-~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 335 ------------------------NKP-IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ------------------------CCC-ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 000 24789999999 9999999998763
No 164
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=2.8e-20 Score=149.07 Aligned_cols=163 Identities=21% Similarity=0.360 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC-----------CCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH-----------SRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~-----------~~~~ 130 (267)
...++|+++|.+|+|||||+|+|.+..+..... + +.++..... ... .+++|||||. +.++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~----~-~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKR----P-GVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIK 77 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC----C-ceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHH
Confidence 456799999999999999999999876432211 1 111111111 111 5899999994 3444
Q ss_pred hhHHhhhc----cCCEEEEEEeCCCCCCchH--------HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHH
Q 024474 131 PKLDEFLP----QAAGIVFVVDALEFLPNCS--------AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR 198 (267)
Q Consensus 131 ~~~~~~~~----~~d~ii~v~d~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 198 (267)
..+..++. .++++++|+|++....... .....+...+.. .++|+++|+||+|+.... .+..
T Consensus 78 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~~ 150 (201)
T PRK04213 78 DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR--DEVL 150 (201)
T ss_pred HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH--HHHH
Confidence 45555543 4578999999865311100 111222333322 578999999999996543 1111
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhcC
Q 024474 199 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQVK 266 (267)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~~ 266 (267)
+.+.+ .+... . . +. .....++++||++|.++++++||.+.+.
T Consensus 151 ~~~~~---~~~~~-----~--------------~--~~--~~~~~~~~~SA~~ggi~~l~~~l~~~~~ 192 (201)
T PRK04213 151 DEIAE---RLGLY-----P--------------P--WR--QWQDIIAPISAKKGGIEELKEAIRKRLH 192 (201)
T ss_pred HHHHH---HhcCC-----c--------------c--cc--ccCCcEEEEecccCCHHHHHHHHHHhhc
Confidence 12211 11000 0 0 00 0012589999999999999999998765
No 165
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=5e-20 Score=167.39 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=107.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-------------CCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-------------KGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~DtpG~~~~ 129 (267)
+.+.|+++|++|+|||||+|+|.+..+.......+..+.+......... ......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4568999999999999999999987654322111111111111111100 111124899999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------HH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------KE 195 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~~ 195 (267)
..++..+++.+|++++|+|++++. . ......+ ..+. ..+.|+++++||+|+..... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~-~-~qt~e~i-~~l~-----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGF-K-PQTQEAL-NILR-----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCC-C-HhHHHHH-HHHH-----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 999999999999999999998741 1 1111222 2222 15789999999999964211 11
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 196 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.+.+.+.+..+.. .+...+...+.. ....+...+++++++||++|+ +++|.+||..
T Consensus 155 ~v~~~~~~~~~~lv~---~l~~~G~~~e~~-------~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 155 QVQQNLDTKVYNLVI---KLHEEGFEAERF-------DRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHH---HHHhcCccHHhh-------hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 111222221111110 011111100000 001233567899999999999 9999998864
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=1.8e-20 Score=147.46 Aligned_cols=151 Identities=24% Similarity=0.317 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
+.+.++|+++|++|+|||||+|+|++..+.... ....+++. .......++ .+.+|||||+.. +.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~-~~~~~~t~--~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLART-SKTPGRTQ--LINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCcce--EEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 467889999999999999999999987532111 11111111 111111122 689999999642 22
Q ss_pred hhHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....+++. +|++++|+|++.+ +......+...+.. .+.|+++|+||+|+..........+.+++.+..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~---~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHP---LKELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCC---CCHHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 233445543 5799999999874 22222233334432 578999999999997543333333444433332
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS 255 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~ 255 (267)
. ..++.++++||++|+ ++
T Consensus 161 ~------------------------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 D------------------------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred c------------------------------cCCCceEEEECCCCCCCC
Confidence 1 123468999999998 63
No 167
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8e-21 Score=137.27 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=126.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+++++|..|+|||+++.++.-++. ++ ..|+.+ ++...+..++.++++||..|+...++.|+.|+.+.|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev----vt-tkPtig---fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~ 87 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV----VT-TKPTIG---FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTD 87 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc----cc-cCCCCC---cCccccccccccceeeEccCcccccHHHHHHhcccc
Confidence 3778999999999999999998876653 12 222222 223333446689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|||+|.++. +.+......+..+++...+ .+..+++++||+|........+....+.- ..+.
T Consensus 88 avIyVVDssd~-dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~t~~E~~~~L~l--~~Lk------------ 150 (182)
T KOG0072|consen 88 AVIYVVDSSDR-DRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGALTRSEVLKMLGL--QKLK------------ 150 (182)
T ss_pred eEEEEEeccch-hhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhhhHHHHHHHhCh--HHHh------------
Confidence 99999999997 6677888888888887765 45779999999998876666555544431 1110
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.+++.||.+|+ +++..+||.+-++
T Consensus 151 -----------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 151 -----------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred -----------------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 345789999999999 9999999988664
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.85 E-value=3.7e-20 Score=142.00 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDE 135 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~ 135 (267)
+.+|+++|++|+|||||++++.+.... ......+++........... ...+.+|||||+.++... ...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRA--IVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceE--eccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHH
Confidence 358999999999999999999987531 11112222222222122222 357899999998765432 224
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
++..+|++++|+|+++. .+......+.. ..+.|+++|+||+|+...... .
T Consensus 77 ~~~~~~~~v~v~d~~~~-~~~~~~~~~~~---------~~~~~vi~v~nK~D~~~~~~~-----------~--------- 126 (157)
T cd04164 77 AIEEADLVLFVIDASRG-LDEEDLEILEL---------PADKPIIVVLNKSDLLPDSEL-----------L--------- 126 (157)
T ss_pred HHhhCCEEEEEEECCCC-CCHHHHHHHHh---------hcCCCEEEEEEchhcCCcccc-----------c---------
Confidence 67789999999999975 22333222111 267899999999999754322 0
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
......+++++||++|. +++|.++|.+.++
T Consensus 127 ---------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 157 (157)
T cd04164 127 ---------------------SLLAGKPIIAISAKTGEGLDELKEALLELAG 157 (157)
T ss_pred ---------------------cccCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 00224578999999999 9999999998764
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.85 E-value=6.5e-20 Score=166.95 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.+..+.......+..+...+.. ..++. ..+++|||||+.+|..++.+++..+|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v---~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHV---ENEDG-KMITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEE---EECCC-cEEEEEECCCCcchhhHHHhhhccCC
Confidence 466899999999999999999999877644322222222221211 11221 27899999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ ......+.+.... ..++|+++++||+|+... ..+.+.+.+.+ ....
T Consensus 161 iaILVVda~dg--v~~qT~e~i~~~~------~~~vPiIVviNKiDl~~~-~~e~v~~~L~~----~g~~---------- 217 (587)
T TIGR00487 161 IVVLVVAADDG--VMPQTIEAISHAK------AANVPIIVAINKIDKPEA-NPDRVKQELSE----YGLV---------- 217 (587)
T ss_pred EEEEEEECCCC--CCHhHHHHHHHHH------HcCCCEEEEEECcccccC-CHHHHHHHHHH----hhhh----------
Confidence 99999999875 1233333333222 267899999999999643 33333332221 1000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.......+.++++||++|+ +++|+++|..
T Consensus 218 -------------~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 -------------PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred -------------HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 0011234579999999999 9999999854
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=4.8e-20 Score=143.57 Aligned_cols=158 Identities=21% Similarity=0.210 Sum_probs=97.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----------h
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----------K 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----------~ 132 (267)
.++|+++|.+|+|||||+|+|++..... ......++..........++ ..+.+|||||+.+... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--VSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--ccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHH
Confidence 4689999999999999999999865311 11111111111111111122 4688999999764311 1
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~ 210 (267)
...++..+|++++|+|+.++ .+... ...+..... .+.|+++|+||+|+.... ..+.+.+.+.+.+..
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~-~~~~~-~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 146 (174)
T cd01895 78 TLKAIERADVVLLVIDATEG-ITEQD-LRIAGLILE------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF--- 146 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCC-cchhH-HHHHHHHHh------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc---
Confidence 12356789999999999886 22222 222222222 568999999999997653 222222222221110
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++++||++|+ ++++++++.++
T Consensus 147 ----------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 147 ----------------------------LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----------------------------ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 123478999999999 99999999875
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.4e-20 Score=166.42 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
...++|+++|.+|||||||+|+|++.... .+......+.+........++ ..+.+|||||+.. +....
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~--~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA--VVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc--cccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHH
Confidence 45679999999999999999999987531 111122222222222222233 4689999999863 23345
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|++++. +.. ...+.+.++. .++|+++|+||+|+...... . .+ ...
T Consensus 112 ~~~~~~aD~il~VvD~~~~~-s~~--~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~--~----~~-~~~------ 170 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGA-TAT--DEAVARVLRR-----SGKPVILAANKVDDERGEAD--A----AA-LWS------ 170 (472)
T ss_pred HHHHHhCCEEEEEEECCCCC-CHH--HHHHHHHHHH-----cCCCEEEEEECccCCccchh--h----HH-HHh------
Confidence 56788999999999999862 221 2233333332 67899999999998642110 0 00 000
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.... ..+++||++|. +++|+++|.+.++
T Consensus 171 ------------------------~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 171 ------------------------LGLG-EPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred ------------------------cCCC-CeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 0001 24689999999 9999999988764
No 172
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.84 E-value=2.8e-21 Score=150.12 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=123.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC-CCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST-KGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...|++++|+.++|||+|+..+..+.|+..+++++-.+ + .....+ +++.+.+.+|||+|+++|..++.-.+.++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn---y-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~td 78 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN---Y-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTD 78 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc---c-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCC
Confidence 35699999999999999999999999988888776422 2 223444 488899999999999999887777889999
Q ss_pred EEEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++++|++.++ .++++ ..+|+.++...+ ++.|+|+|++|.||..+. .. .+.+.+. ..+.++....
T Consensus 79 vfl~cfsv~~p-~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d~--~~-~~~l~~~------~~~~Vt~~~g 144 (198)
T KOG0393|consen 79 VFLLCFSVVSP-ESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRDDP--ST-LEKLQRQ------GLEPVTYEQG 144 (198)
T ss_pred EEEEEEEcCCh-hhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhCH--HH-HHHHHhc------cCCcccHHHH
Confidence 99999999998 67776 578888888764 789999999999998432 11 1111110 1111221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHH-HHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE-QFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~-~~l~~~~ 265 (267)
.. ....-+.+.|+||||++.+ +.+.+ +.+...+
T Consensus 145 ~~------------lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 145 LE------------LAKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HH------------HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 11 1122345789999999999 87775 4444333
No 173
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.7e-20 Score=166.16 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------chhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LRPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~~~ 132 (267)
..++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+.+|||||+.+ +...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHH
Confidence 4689999999999999999999987632 122233333333222222334 4578999999642 1111
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+..........+.+.+.+.
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~-~s~~~~-~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~----- 352 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEP-ISEQDQ-RVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELA----- 352 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcc-----
Confidence 12467899999999999986 344443 33433332 67899999999999753222111111111100
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+++++||++|. ++++++.+.+.+
T Consensus 353 -------------------------~-~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 -------------------------Q-VPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred -------------------------c-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 112367899999999 999998887643
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=3.3e-20 Score=165.30 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
...+++++|.+|+|||||+|+|++.... .+....+++.+........++ ..+.+|||||+.+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERV--IVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCee--ecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHH
Confidence 4579999999999999999999986521 111122222222111112233 47899999998654322
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++|+|+|++++ .+... ...+..+.. .++|+++|+||+|+.. .. +..+.+.+.+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~-~~~~~-~~~~~~~~~------~~~~iiiv~NK~Dl~~--~~-~~~~~~~~~~~~~--- 312 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEG-ITEQD-LRIAGLILE------AGKALVIVVNKWDLVK--DE-KTREEFKKELRRK--- 312 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCC-ccHHH-HHHHHHHHH------cCCcEEEEEECcccCC--CH-HHHHHHHHHHHHh---
Confidence 12467899999999999986 22222 223333322 5789999999999972 11 1122222222211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+.. ...++++++||++|. ++++++++.+.
T Consensus 313 -----------------------~~~-~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 313 -----------------------LPF-LDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred -----------------------ccc-CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 000 123578999999999 99999888664
No 175
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=7.2e-20 Score=145.41 Aligned_cols=169 Identities=16% Similarity=0.174 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc------e-eeee----ccccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG------T-VTSM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
..+|+++|++++|||||+++|+......+ . .... ...+.+.......+......+.++||||+.+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 35899999999999999999976411000 0 0000 00111222222222334467999999999988887
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~ 210 (267)
....+..+|++++|+|+..+ .......+...+.. .++| +++|+||+|+..... .+.+.+++.+.+..+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g---~~~~~~~~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g- 152 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG---PMPQTREHLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG- 152 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc-
Confidence 88888999999999999875 22222223333332 5566 789999999863221 1223333444333321
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-c----------hhHHHHHHhhcCC
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-I----------SQVEQFIREQVKP 267 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i----------~~l~~~l~~~~~p 267 (267)
+. ..+++++++||++|. + ..|++.|...++|
T Consensus 153 ------------------------~~--~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 153 ------------------------FD--GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred ------------------------cc--ccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence 00 235789999999998 5 3677888776543
No 176
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=3.7e-20 Score=144.93 Aligned_cols=157 Identities=22% Similarity=0.213 Sum_probs=98.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----hh---hHHhhhcc
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----RP---KLDEFLPQ 139 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~~---~~~~~~~~ 139 (267)
++|++|||||||+|+|.+.... ....++..+... ...+. ....+.+|||||+.+. +. ....+++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~-----~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLG-----VVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcce-----EEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhc
Confidence 5899999999999999987531 111122222211 11122 1357899999997431 11 22345778
Q ss_pred CCEEEEEEeCCCCC-----CchHHHHHHHHHHHhcCCC----CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 140 AAGIVFVVDALEFL-----PNCSAASEYLYDILTNSTV----VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 140 ~d~ii~v~d~~~~~-----~~~~~~~~~l~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+|++++|+|+++.. ........+...+...... ...+.|+++|+||+|+.......... .. ..
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~--~~--- 146 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VR--EL--- 146 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HH--HH---
Confidence 99999999998862 3456666666666543110 01478999999999997543322211 00 00
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.......++++||++|. +++++++|.+.+
T Consensus 147 --------------------------~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 147 --------------------------ALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred --------------------------hcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 00223468999999999 999999997653
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=1e-19 Score=140.61 Aligned_cols=157 Identities=24% Similarity=0.302 Sum_probs=98.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HHh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LDE 135 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~~ 135 (267)
..+|+++|++|+|||||+|++.+..... ......++...... ........+.+|||||....... ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe--ccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 4589999999999999999999875321 11111111111111 11223357899999998754432 234
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+..+|++++|+|+++. ......++.+.+.. .+.|+++|+||+|+... ...+.+.+.. +..
T Consensus 79 ~~~~~d~i~~v~d~~~~---~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~-~~~-------- 139 (168)
T cd04163 79 ALKDVDLVLFVVDASEP---IGEGDEFILELLKK-----SKTPVILVLNKIDLVKD--KEDLLPLLEK-LKE-------- 139 (168)
T ss_pred HHHhCCEEEEEEECCCc---cCchHHHHHHHHHH-----hCCCEEEEEEchhcccc--HHHHHHHHHH-HHh--------
Confidence 57889999999999875 22223333333332 46899999999998732 1122221111 110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.....+++++|+++|+ +++++++|.+++
T Consensus 140 ----------------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 140 ----------------------LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred ----------------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0113468999999999 999999998764
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=9.4e-20 Score=168.26 Aligned_cols=166 Identities=17% Similarity=0.254 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|....+.......+......+.... ..++....++||||||+..|..++.++++.+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~-~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEF-EYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEE-EecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999987654322222222122222221 11234478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|++++. .....+.+..+ . ..++|+++|+||+|+... ..+.+.+.+.. ... +
T Consensus 321 iaILVVDA~dGv--~~QT~E~I~~~-k-----~~~iPiIVViNKiDl~~~-~~e~v~~eL~~----~~l----l------ 377 (742)
T CHL00189 321 IAILIIAADDGV--KPQTIEAINYI-Q-----AANVPIIVAINKIDKANA-NTERIKQQLAK----YNL----I------ 377 (742)
T ss_pred EEEEEEECcCCC--ChhhHHHHHHH-H-----hcCceEEEEEECCCcccc-CHHHHHHHHHH----hcc----c------
Confidence 999999998751 12222222222 2 267899999999999753 22233322221 100 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.......++++++||++|+ +++|+++|...
T Consensus 378 -------------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 378 -------------PEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred -------------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 0001234689999999999 99999998754
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.4e-19 Score=168.61 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=108.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+.|+++|+.++|||||+++|.+..+.......+....+.+.+ .++ +..++||||||+..|..++.++++.+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v---~~~--~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQV---ETN--GGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEE---EEC--CEEEEEEECCCCccchhHHHhhhhhC
Confidence 3577899999999999999999998876543322222111222222 112 25799999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|||++++ ........+.... ..++|+++|+||+|+... ..+.+...+.. .. ..
T Consensus 362 DiaILVVdAddG--v~~qT~e~i~~a~------~~~vPiIVviNKiDl~~a-~~e~V~~eL~~----~~-----~~---- 419 (787)
T PRK05306 362 DIVVLVVAADDG--VMPQTIEAINHAK------AAGVPIIVAINKIDKPGA-NPDRVKQELSE----YG-----LV---- 419 (787)
T ss_pred CEEEEEEECCCC--CCHhHHHHHHHHH------hcCCcEEEEEECcccccc-CHHHHHHHHHH----hc-----cc----
Confidence 999999999875 1222222232221 267899999999999653 23333332221 10 00
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
-.+....+.++++||++|+ +++|+++|..
T Consensus 420 --------------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 --------------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred --------------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 0011334689999999999 9999999863
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=8.2e-20 Score=161.84 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----h---hhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----R---PKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~---~~~~~~ 136 (267)
...|+++|.||||||||+|+|++... .+..++.++...........+ ..+.+|||||+.+. . ....++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp---kIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP---KIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc---cccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHH
Confidence 34899999999999999999998643 233333333322222222222 57999999997432 1 123346
Q ss_pred hccCCEEEEEEeCCCCC---CchHHHHHHHHHHHhcCC--------CCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNST--------VVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~--------~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+..+|++|+|+|+++.. +.+.....+..++..... ....++|+++|+||+|+..... ..+.+...+
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l 310 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPEL 310 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHH
Confidence 77899999999997521 223333333333322110 0115689999999999964321 222222211
Q ss_pred HHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 206 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...+.++++||++|+ +++|++||.+.+
T Consensus 311 ~--------------------------------~~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 311 E--------------------------------ARGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred H--------------------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 113468999999999 999999998765
No 181
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=147.40 Aligned_cols=124 Identities=22% Similarity=0.282 Sum_probs=94.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|||||||+++|.++.+.....++.. ..+...........+.+.+|||+|+++++..+..|+.++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG---NLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee---eeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999999887654443321 1122222222222567999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
+|+|........+....|...+.... ..+.|+++|+||+|+......
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELA---PDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhC---CCCceEEEEecccccccchhH
Confidence 99999985456666777777766642 146899999999999876543
No 182
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.83 E-value=1.4e-19 Score=137.08 Aligned_cols=155 Identities=25% Similarity=0.333 Sum_probs=104.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCc-ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEE
Q 024474 69 LAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVV 147 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~ 147 (267)
++|++|+|||||++++.+... .....++. . ...............+.+||+||+..+......+++.+|++++|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 76 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-I---DFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY 76 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-h---heeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999998764 12111111 1 111111112233568999999999988888888999999999999
Q ss_pred eCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCC
Q 024474 148 DALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLG 227 (267)
Q Consensus 148 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (267)
|+++. .+......+........ ...+.|+++|+||+|+.......... ......
T Consensus 77 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~--------------------- 130 (157)
T cd00882 77 DVTDR-ESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEERVVSEEE--LAEQLA--------------------- 130 (157)
T ss_pred ECcCH-HHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccccchHHHH--HHHHHH---------------------
Confidence 99986 45555555522222211 23789999999999997654433221 000000
Q ss_pred CCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 228 IPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.....+++++|+.+|. ++++++||.+
T Consensus 131 ----------~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 131 ----------KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred ----------hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 0335679999999999 9999999863
No 183
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.83 E-value=1.1e-18 Score=140.91 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=117.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc--ccc---eee-------------eeccccceeEeecc---cCCCccccEEEEeC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGST--HQG---TVT-------------SMEPNEDTFVLHSE---STKGKIKPVHLVDV 123 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~--~~~---~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~~l~Dt 123 (267)
++|+++|+.++|||||+.+|+...- ... ... ++......+.+... ..++..+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999975321 000 000 01000001111110 11244678999999
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQ 200 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~~ 200 (267)
||+.+|......+++.+|++++|+|+.++ . .......+..... .++|+++|+||+|+.. ..++++..+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g-~-~~~t~~~l~~~~~------~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEG-V-CVQTETVLRQALK------ERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCC-C-CHHHHHHHHHHHH------cCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 99999999999999999999999999986 2 2223333333332 5679999999999863 2356677777
Q ss_pred HHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC---------cchhHHHHHHhhcCC
Q 024474 201 MEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---------EISQVEQFIREQVKP 267 (267)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---------~i~~l~~~l~~~~~p 267 (267)
+.+.+.+++........++..+. +...+.|+...+++ +.+||+.| .+..+++.+.+++||
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~-----~~~~~~~~p~~gnv--~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEK-----DDEKWYFSPQKGNV--AFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHHHHhHHHHhccccccccc-----CcCCcEEeeCCCcE--EEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence 77777777665554432211100 01112344334444 44788866 166778888888875
No 184
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=1.4e-19 Score=139.36 Aligned_cols=139 Identities=20% Similarity=0.222 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH----HhhhccCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL----DEFLPQAA 141 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~d 141 (267)
+|+++|.+|+|||||+|+|.+.... ...+....+. .. .+|||||+......+ ...++.+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~~-----~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEFN-----DK----GDIDTPGEYFSHPRWYHALITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEEC-----CC----CcccCCccccCCHHHHHHHHHHHhcCC
Confidence 7999999999999999998865311 0111111111 11 269999974332222 23478999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+. ...|+..+ ..++|+++++||+|+... ..+. +.+.+...
T Consensus 67 ~il~v~d~~~~-~s~--~~~~~~~~-------~~~~~ii~v~nK~Dl~~~-~~~~----~~~~~~~~------------- 118 (158)
T PRK15467 67 MLIYVHGANDP-ESR--LPAGLLDI-------GVSKRQIAVISKTDMPDA-DVAA----TRKLLLET------------- 118 (158)
T ss_pred EEEEEEeCCCc-ccc--cCHHHHhc-------cCCCCeEEEEEccccCcc-cHHH----HHHHHHHc-------------
Confidence 99999999976 222 22344332 146789999999998542 2222 12211111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++|+++|.+.+
T Consensus 119 -----------------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 119 -----------------GFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred -----------------CCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 112479999999999 999999998865
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2e-19 Score=156.61 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~~~ 138 (267)
.|+++|.||||||||+|+|++.+. .++.++.++............ ...+.++||||+.+-. ....+++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 799999999999999999998653 334344433333333332221 2359999999986421 12335688
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
.+|++++|+|++.. .+..+....++.++..... ...+.|+++|+||+|+.... ++.+.+++....+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~-------- 304 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDEE---EAEERAKAIVEAL-------- 304 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCChH---HHHHHHHHHHHHh--------
Confidence 99999999998721 1345555566655554211 11468999999999986432 2222222211110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.+.++
T Consensus 305 ----------------------~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 305 ----------------------GWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ----------------------CCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 111247899999999 9999999988764
No 186
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=155.07 Aligned_cols=151 Identities=22% Similarity=0.250 Sum_probs=109.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch---------hhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------PKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------~~~~~ 135 (267)
+.|+++|.||||||||+|+|++... +.+...+..+++..+....+.+ ..+.++||+|.+... .....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 5799999999999999999999863 4566676667776666665555 469999999988433 12345
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+..||++|||+|...+ .....+.+.+++.. .++|+++|+||+|-..... ....+.
T Consensus 80 Ai~eADvilfvVD~~~G---it~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e~---~~~efy------------- 135 (444)
T COG1160 80 AIEEADVILFVVDGREG---ITPADEEIAKILRR-----SKKPVILVVNKIDNLKAEE---LAYEFY------------- 135 (444)
T ss_pred HHHhCCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEEcccCchhhh---hHHHHH-------------
Confidence 77899999999999886 34444444555442 6799999999999652211 111111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. -+--+++++||..|. +.+|.+++.+.+
T Consensus 136 ---------------------s-lG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 136 ---------------------S-LGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ---------------------h-cCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 0 122257899999999 999999999886
No 187
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.1e-19 Score=156.23 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----hhh---HHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----RPK---LDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----~~~---~~~~~~ 138 (267)
.|+++|.||||||||+|+|++... .+..++.++.........+. ....+.+|||||+.+. ..+ ..+++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~---kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP---KIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC---ccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 799999999999999999998652 22222222222222222222 1357999999997531 122 334566
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+++++++|+|+++. .+.++....|..++..... ...++|+++|+||+|+... .+ .+++..+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL~~~--~e----~l~~l~~~l-------- 300 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDLPEA--EE----NLEEFKEKL-------- 300 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCCcCC--HH----HHHHHHHHh--------
Confidence 79999999999753 1345555555555444211 1257899999999998422 11 111111110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..++++||++|+ +++|+++|.+.+
T Consensus 301 ----------------------~--~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 301 ----------------------G--PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred ----------------------C--CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 358999999999 999999998765
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.82 E-value=1.7e-19 Score=164.84 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+++|++|+|||||+++|++..............+.+........++ ..+.+|||||+++|......++.++|++++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 689999999999999999997431110000000011112222222223 689999999999998888888999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|+|++++. .....+.+. ++.. .++| +++|+||+|+.+....+...+.+.+.+....
T Consensus 80 VVDa~~G~--~~qT~ehl~-il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~--------------- 136 (581)
T TIGR00475 80 VVDADEGV--MTQTGEHLA-VLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI--------------- 136 (581)
T ss_pred EEECCCCC--cHHHHHHHH-HHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------------
Confidence 99999851 223333332 2322 4677 9999999999754333333333333322210
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+ ..+++++++||++|+ +++++++|.+.+
T Consensus 137 ----------~---~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 137 ----------F---LKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred ----------C---CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 0 124579999999999 999999887653
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=4.1e-19 Score=162.57 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=106.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--ccc----cee-eeec---ccccee-----EeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQ----GTV-TSME---PNEDTF-----VLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~----~~~-~~~~---~~~~~~-----~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++++++|+.++|||||+.+|+... +.. ... .+.+ ..+.++ .......++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45699999999999999999997531 111 000 0000 001111 11111124556789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+.++++.+|++|+|+|++++ ...+....|. .... .+.|+++|+||+|+.... .+...+.+.+.+.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~g-v~~qt~~~~~-~~~~------~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg- 155 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVY-LALE------NDLEIIPVLNKIDLPAAD-PERVKQEIEDVIG- 155 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHH-HHHH------CCCCEEEEEECCCCCccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999986 2233333332 2222 578999999999986532 2222222222110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|+ +++|+++|.+.++|
T Consensus 156 -------------------------------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 -------------------------------IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -------------------------------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 001247999999999 99999999988764
No 190
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=2.5e-19 Score=159.67 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHHhhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLDEFL 137 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~~~~ 137 (267)
+|+++|.+|||||||+|+|++... ..+...++.+.+........++ ..+.+|||||+.. +......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999999999998752 1222233333333333333333 4799999999743 333455678
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+.++ .......+...++. .++|+++|+||+|+....... .. +..
T Consensus 77 ~~ad~vl~vvD~~~~---~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~---~~----~~~---------- 131 (429)
T TIGR03594 77 EEADVILFVVDGREG---LTPEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAVA---AE----FYS---------- 131 (429)
T ss_pred hhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----hCCCEEEEEECccCCcccccH---HH----HHh----------
Confidence 899999999999875 22222333334432 578999999999986543210 00 000
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+...++++||++|. ++++++++.+.++
T Consensus 132 ---------------------lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 132 ---------------------LGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred ---------------------cCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 111247999999999 9999999988764
No 191
>PTZ00099 rab6; Provisional
Probab=99.81 E-value=2.4e-19 Score=140.40 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=94.7
Q ss_pred eEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 104 FVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+......+++..+.+.||||||++.++..+..+++++|++|+|||+++. .+++.+..|+..++... ..+.|+++|+
T Consensus 17 ~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~-~sf~~~~~w~~~i~~~~---~~~~piilVg 92 (176)
T PTZ00099 17 FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR-QSFENTTKWIQDILNER---GKDVIIALVG 92 (176)
T ss_pred EEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEE
Confidence 3333344567778999999999999999999999999999999999987 67999999999887643 2568999999
Q ss_pred ecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHH
Q 024474 184 NKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQF 260 (267)
Q Consensus 184 nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~ 260 (267)
||+|+..... .++.. .... ..+..|+++||++|+ ++++++|
T Consensus 93 NK~DL~~~~~v~~~e~~----~~~~--------------------------------~~~~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 93 NKTDLGDLRKVTYEEGM----QKAQ--------------------------------EYNTMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred ECcccccccCCCHHHHH----HHHH--------------------------------HcCCEEEEEECCCCCCHHHHHHH
Confidence 9999964322 11111 1000 123468999999999 9999999
Q ss_pred HHhhcC
Q 024474 261 IREQVK 266 (267)
Q Consensus 261 l~~~~~ 266 (267)
|.+.++
T Consensus 137 l~~~l~ 142 (176)
T PTZ00099 137 IAAKLP 142 (176)
T ss_pred HHHHHH
Confidence 998763
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.8e-19 Score=158.75 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~~~ 136 (267)
++|+++|.+|||||||+|+|.+.... .+....+.+.+.......+++ ..+.+|||||+.. +......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~--~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA--IVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--eeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 58999999999999999999987531 122233333333333333334 6899999999987 23334567
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..+|++|+|+|+.++. .....++.+.++. .+.|+++|+||+|+.... .. ..+ +..
T Consensus 78 ~~~ad~il~vvd~~~~~---~~~~~~~~~~l~~-----~~~piilv~NK~D~~~~~--~~----~~~-~~~--------- 133 (435)
T PRK00093 78 IEEADVILFVVDGRAGL---TPADEEIAKILRK-----SNKPVILVVNKVDGPDEE--AD----AYE-FYS--------- 133 (435)
T ss_pred HHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCcEEEEEECccCccch--hh----HHH-HHh---------
Confidence 88999999999998752 2222233333332 478999999999965311 11 110 000
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.-.++++||++|. +++++++|.+
T Consensus 134 ----------------------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 134 ----------------------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----------------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 001136899999999 9999999876
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.6e-19 Score=158.89 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=99.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh---------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------- 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------- 132 (267)
...++|+++|.+|+|||||+|+|++.... .+....+++.+........+ +..+.+|||||+.+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~--~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV--IVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHH
Confidence 35689999999999999999999986521 12222222222221111122 356899999997543221
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
...+++.+|++|+|+|++++ .+... ...+..+.. .+.|+++|+||+|+.......++.+.+...+..
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~-~~~~~-~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~--- 315 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEG-ITEQD-LRIAGLALE------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPF--- 315 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CCHHH-HHHHHHHHH------cCCcEEEEEECccCCCHHHHHHHHHHHHHhccc---
Confidence 22467889999999999986 22222 222222222 578999999999997332222222222211110
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++++||++|. ++++++++.+
T Consensus 316 ----------------------------~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 316 ----------------------------LDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred ----------------------------ccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 123578999999999 9999888765
No 194
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=6.2e-19 Score=144.28 Aligned_cols=189 Identities=22% Similarity=0.276 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc--------cc-eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTH--------QG-TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~--------~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+...-. .. ...+..+ .+.+.......+..+..++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999763210 00 0000000 011111222222344578999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+..+++.+|++++|+|++++. ......+.+.+.. .++|+++|+||+|+.... .....+.+++.+.. ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~---~~~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~---~~ 148 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGV---QAQTRILWRLLRK-----LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSS---DI 148 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCC---CHHHHHHHHHHHH-----cCCCEEEEEECccccCCC-HHHHHHHHHHHHCC---Ce
Confidence 999999999999999999862 2222223333332 578999999999998653 34444444443321 11
Q ss_pred hcccc----------c-----------ccccc-ccCCCCCCCcccccc----------cceeEEEEeeeccCc-chhHHH
Q 024474 213 SAVSE----------A-----------DVTND-FTLGIPGQAFSFSQC----------HNKVSVAEASGLTGE-ISQVEQ 259 (267)
Q Consensus 213 ~~~~~----------~-----------~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~-i~~l~~ 259 (267)
-.+.. . +.+++ .+....+.+++-+++ ..-++++..||.++. +..|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~ 228 (237)
T cd04168 149 VPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLE 228 (237)
T ss_pred EEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHH
Confidence 11100 0 00000 000001122222221 245678888999999 999999
Q ss_pred HHHhhcC
Q 024474 260 FIREQVK 266 (267)
Q Consensus 260 ~l~~~~~ 266 (267)
.|.+++|
T Consensus 229 ~~~~~~p 235 (237)
T cd04168 229 GITKLFP 235 (237)
T ss_pred HHHHhcC
Confidence 9999886
No 195
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.81 E-value=1.1e-19 Score=133.33 Aligned_cols=116 Identities=28% Similarity=0.390 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
||+|+|++|||||||+++|++..+...... ......++.............+.+||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVP-EETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS---------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccc-cccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 799999999999999999999876411111 1111223333333334444469999999999888877777999999999
Q ss_pred EEeCCCCCCchHHHH---HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 146 VVDALEFLPNCSAAS---EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 146 v~d~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
|||+++. .++..+. .|+..+... ..++|+++|+||.|
T Consensus 80 v~D~s~~-~s~~~~~~~~~~l~~~~~~----~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDP-ESLEYLSQLLKWLKNIRKR----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGH-HHHHHHHHHHHHHHHHHHH----SSCSEEEEEEE-TC
T ss_pred EEcCCCh-HHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeccC
Confidence 9999986 5677764 445555432 25699999999998
No 196
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=9.9e-19 Score=159.53 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC---CCcc----------ccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST---KGKI----------KPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~l~DtpG~~~ 128 (267)
.+.+.|+++|++|+|||||+++|.+..+.......+..+.+....+.... .+.. -.+++|||||+++
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 46678999999999999999999876542222111111111111111000 0100 1278999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------H
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 194 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 194 (267)
|..++...++.+|++++|+|++++. .......+. .+. ..++|+++++||+|+..... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~--~~qt~e~i~-~~~-----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGF--QPQTIEAIN-ILK-----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCC--CHhHHHHHH-HHH-----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 9999888899999999999998741 111222222 222 25789999999999853211 1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 195 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
..+.+.+.+.+..+... +...+...+.. ....+....+.++++||++|+ +++|.+.+.
T Consensus 156 ~~v~~~f~~~l~ev~~~---L~~~g~~~e~~-------~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 156 QRVQQELEEKLYELIGQ---LSELGFSADRF-------DRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCChhhh-------hhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 11222222222222111 11111111000 001223567889999999999 988887765
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=7.5e-19 Score=160.41 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc--CCcccceeee-----e----ccccceeEeecccCCCccccEEEEeCCCCCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD--GSTHQGTVTS-----M----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 133 (267)
++|+++|+.++|||||+++|+. +.+....... . ...+.+.......+.++.+.+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4899999999999999999985 2222111000 0 001222222223334455789999999999999999
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++++|+|+.++ .......++..+.. .++|+++|+||+|+.... ..++.+.+...+..+...
T Consensus 82 ~~~l~~aD~alLVVDa~~G--~~~qT~~~l~~a~~------~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~~-- 150 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG--PMPQTRFVLKKALE------LGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGAD-- 150 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC--CcHHHHHHHHHHHH------CCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhccc--
Confidence 9999999999999999875 24455556655544 678999999999986543 333444444444332100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcCC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVKP 267 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~p 267 (267)
+-...++++++||++| + ++.|++.|.+++++
T Consensus 151 -----------------------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 151 -----------------------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred -----------------------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 0012356899999999 3 88999999988864
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=130.51 Aligned_cols=161 Identities=26% Similarity=0.318 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc--ceeeee--cc---ccceeEeecccCCCccccEEEEeCCCCCCchhhHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GTVTSM--EP---NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
....||+++|+.++||||++.++....... ...++. .. ++....+.....++ ...+.++|||||.+|.-+|+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 456799999999999999999998765311 011111 11 11112222222222 25799999999999999999
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
-+.+++.++|+++|.+.+ ..+ ....+.+++.. ...+|++|++||.||.+..+++.+++.+...+
T Consensus 87 ~l~~ga~gaivlVDss~~-~~~--~a~~ii~f~~~----~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--------- 150 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRP-ITF--HAEEIIDFLTS----RNPIPVVVAINKQDLFDALPPEKIREALKLEL--------- 150 (187)
T ss_pred HHhCCcceEEEEEecCCC-cch--HHHHHHHHHhh----ccCCCEEEEeeccccCCCCCHHHHHHHHHhcc---------
Confidence 999999999999999987 333 33444455543 13399999999999999999998888777522
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++.+|..++ ..+.++.|..+
T Consensus 151 -------------------------~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 -------------------------LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -------------------------CCCceeeeecccchhHHHHHHHHHhh
Confidence 24578999999999 66666666554
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=7.9e-19 Score=141.34 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc--e--------------------eeeec----cccceeEeecccCCCccccEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQG--T--------------------VTSME----PNEDTFVLHSESTKGKIKPVH 119 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~--~--------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 119 (267)
+|+++|++|+|||||+++|+...-.-. . ..... ..+.+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975321000 0 00000 001111111112223346899
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCCC
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKVT 190 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~~ 190 (267)
+|||||+.+|.......++.+|++|+|+|++++. ..... ....++.. .+ .++++|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~-~~~~~~~~-----~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTR-RHSYILSL-----LGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHH-HHHHHHHH-----cCCCcEEEEEEchhccc
Confidence 9999999888777777889999999999998752 11121 22222221 23 45788999999864
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=1.4e-18 Score=132.98 Aligned_cols=155 Identities=25% Similarity=0.252 Sum_probs=98.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhccCC
Q 024474 69 LAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLPQAA 141 (267)
Q Consensus 69 i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~~~d 141 (267)
++|++|+|||||++++++..... .....+.+......... ......+.+|||||+.++.. ....+++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--VSPVPGTTTDPVEYVWE-LGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--cCCCCCcEECCeEEEEE-ecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 58999999999999999865421 11111111111111111 11135899999999876543 3445788999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+... ....... +..... ..+.|+++|+||+|+..........+....
T Consensus 78 ~il~v~~~~~~-~~~~~~~-~~~~~~------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------------------ 131 (163)
T cd00880 78 LILFVVDADLR-ADEEEEK-LLELLR------ERGKPVLLVLNKIDLLPEEEEEELLELRLL------------------ 131 (163)
T ss_pred EEEEEEeCCCC-CCHHHHH-HHHHHH------hcCCeEEEEEEccccCChhhHHHHHHHHHh------------------
Confidence 99999999986 3333322 233332 268899999999999765433322210000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
........+++++||++|. +++++++|.+.+
T Consensus 132 -------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 132 -------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred -------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 0011345679999999999 999999998763
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=9.7e-19 Score=129.65 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=90.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhhhccC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEFLPQA 140 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~~~~~ 140 (267)
.||+++|+.|+|||||+++|.+.......+.. ..+ .=.++||||-- .+..-......+|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~-------i~~----------~~~~IDTPGEyiE~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQA-------IEY----------YDNTIDTPGEYIENPRFYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccce-------eEe----------cccEEECChhheeCHHHHHHHHHHHhhC
Confidence 48999999999999999999987642211111 111 12369999931 2223333445689
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|+|++|.|++++...+..-.. . -.++|+|=|+||+|+.. +.+.+..++.++.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa---~--------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~---------------- 117 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFA---S--------MFNKPVIGVITKIDLPSDDANIERAKKWLKN---------------- 117 (143)
T ss_pred CEEEEEecCCCCCccCCchhh---c--------ccCCCEEEEEECccCccchhhHHHHHHHHHH----------------
Confidence 999999999986333332221 1 15689999999999983 3333333333332
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
.+.-.+|++|+.+|+ +++|.++|.+
T Consensus 118 -------------------aG~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 118 -------------------AGVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred -------------------cCCCCeEEEECCCCcCHHHHHHHHhC
Confidence 112246999999999 9999999975
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=2.4e-18 Score=157.02 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCccccee-----eeec----cccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQGTV-----TSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+.++|+++|+.++|||||+++|+. +.+..... .... ..+.++......+..+.+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999986 33322110 0000 112223333333445568999999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
.+..+++.+|++|+|+|+.++. .......+..... .++|+++|+||+|+..+... ...+.+...+..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~--~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l--- 151 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGP--MPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPD-WVVDQVFDLFVNL--- 151 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCc--cHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchh-HHHHHHHHHHhcc---
Confidence 9999999999999999998751 2233333433333 67899999999998765433 2333333332211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcCC
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 267 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 267 (267)
... .....++++++||++|. +..|++.|.++++|
T Consensus 152 ----~~~------------------~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 152 ----DAT------------------DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred ----Ccc------------------ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 000 00224678999999995 56788888888874
No 203
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=1.6e-18 Score=140.66 Aligned_cols=184 Identities=19% Similarity=0.211 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeec---------ccccee---------Ee-----ec----------ccCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME---------PNEDTF---------VL-----HS----------ESTK 112 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~---------~~~~~~---------~~-----~~----------~~~~ 112 (267)
||+++|+.++|||||+++|..+.+..+.-.... ..+.+. .. +. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997665332111000 000000 00 00 0011
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+..++++||||+.+|.......+. .+|++++|+|+..+. ......+...+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~---~~~d~~~l~~l~~-----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI---IGMTKEHLGLALA-----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC---cHHHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 22357999999999988766555554 689999999998752 2222222233322 6789999999999865
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
........+.+.+.+........+.-.....+.. ....... ....+++|.+||.+|+ +++|.++|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~---~~~~~~~---~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV---LAASNFS---SERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeeccccee---ehhhcCC---ccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 4334444444444433211111111000000000 0001111 1345589999999999 9999999875
No 204
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=8.2e-18 Score=135.98 Aligned_cols=180 Identities=20% Similarity=0.252 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce-------eeee-------ccccceeEeecc-----cCCCccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTSM-------EPNEDTFVLHSE-----STKGKIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~l~DtpG 125 (267)
++|+++|++|+|||||+++|+........ .... ...+.++..... ..++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37999999999999999999874422110 0000 000111111111 1134457899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQME 202 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~l~ 202 (267)
+.++......++..+|++++|+|+++. .+. ....++..... .+.|+++|+||+|+... ....+..+.+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~-~~~-~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~ 152 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEG-VTS-NTERLIRHAIL------EGLPIVLVINKIDRLILELKLPPNDAYFKLR 152 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCC-CCH-HHHHHHHHHHH------cCCCEEEEEECcccCcccccCCHHHHHHHHH
Confidence 999988888999999999999999876 222 22333333322 45899999999998632 12344445566
Q ss_pred HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch--------hHHHHHHhhcC
Q 024474 203 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------QVEQFIREQVK 266 (267)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~--------~l~~~l~~~~~ 266 (267)
+.++.++.......... +..|... +..++++||+.|- +. +|++.|.++++
T Consensus 153 ~~i~~~n~~~~~~~~~~------------~~~~~p~--~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 153 HIIDEVNNIIASFSTTL------------SFLFSPE--NGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHhcCCC------------ceEeccC--CCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 55555544433322111 0112211 2346678998885 55 77888777765
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=148.80 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=112.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
...+|+++|.||+|||||+|+|++.+ +..+.....++.+........++ ..+.++||+|...-...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeeh
Confidence 46899999999999999999999976 33444555555554444433344 47899999997642222
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--CCHHHHHHHHHHHHHHHH
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~l~~~~~~~~ 209 (267)
....+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+... ...++.++.+.+.+..
T Consensus 253 rt~~aI~~a~vvllviDa~~~---~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~-- 322 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEG---ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF-- 322 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCC---chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc--
Confidence 22467789999999999987 55555555554443 78899999999999875 3344455555554332
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-...+++.+||++|. ++++++++.+-
T Consensus 323 -----------------------------l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 323 -----------------------------LDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -----------------------------ccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 223468889999999 99998887653
No 206
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=1.6e-18 Score=158.97 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
-|+++|++++|||||+++|++..............+....+..... ..+..+.+|||||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~-~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ-PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec-CCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999874321100000000011111111111 122358999999999987777788899999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
|+|++++. .....+.+ .++.. .++| +++|+||+|+.+....+...+.+.+.+....
T Consensus 81 VVda~eg~--~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~--------------- 137 (614)
T PRK10512 81 VVACDDGV--MAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG--------------- 137 (614)
T ss_pred EEECCCCC--cHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC---------------
Confidence 99998751 22222332 33332 3455 5799999999753333333333333222110
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
..+.+++++||++|+ +++|+++|.+...|
T Consensus 138 --------------~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 138 --------------FAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred --------------CCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 113568999999999 99999999876543
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=2.1e-18 Score=161.77 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
...++|+++|.+|+|||||+|+|++... ..+...+..+.+........+ +..+.+|||||+.. +....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWA--GTDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEEC--CEEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3457899999999999999999998653 112222222222222222222 35799999999763 23344
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|++++ +......+.+.++. .++|+++|+||+|+..... . ... ...
T Consensus 349 ~~~~~~aD~iL~VvDa~~~---~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~--~----~~~-~~~------ 407 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVG---LTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASEY--D----AAE-FWK------ 407 (712)
T ss_pred HHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECcccccchh--h----HHH-HHH------
Confidence 5678899999999999875 23333333334432 6789999999999853211 0 000 000
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+... ..+++||++|. +++|+++|.+.++
T Consensus 408 ------------------------lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 408 ------------------------LGLG-EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ------------------------cCCC-CeEEEECCCCCCchHHHHHHHHhcc
Confidence 0111 24689999999 9999999988764
No 208
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=1.6e-18 Score=162.21 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK----------L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----------~ 133 (267)
..+|+++|+||+|||||+|+|++... .+.+.+.++.+ .....+......+++|||||+.++... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve--~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVE--RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEe--eEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 46899999999999999999998654 22222222222 222223344468999999998776431 2
Q ss_pred Hhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 134 DEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 134 ~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
..++ ..+|++++|+|+++.+. ...+..++.+ .+.|+++|+||+|+.+........+.+++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler----~l~l~~ql~e------~giPvIvVlNK~Dl~~~~~i~id~~~L~~-------- 139 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER----NLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIDIDALSA-------- 139 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh----hHHHHHHHHH------cCCCEEEEEEchhhhhccCcHHHHHHHHH--------
Confidence 2343 47999999999987522 2233344433 67899999999998754433222222222
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ ++++.+.+.+..
T Consensus 140 ---------------------------~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 ---------------------------RLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------------------------HhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 123468999999999 999999987753
No 209
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.79 E-value=7.3e-20 Score=137.17 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=105.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+|++|+|..++||||++.+++.+-|...+..++ +.++......+++..+++.+|||+|+++|......|++++.+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktI---gvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI---GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccccccccc---chhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45699999999999999999999888766555555 455666666667777889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
.++||+-++. .+++...+|...+.... ..+|.++|-||+|+....
T Consensus 96 ~vLVFSTTDr-~SFea~~~w~~kv~~e~----~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 96 SVLVFSTTDR-YSFEATLEWYNKVQKET----ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred eEEEEecccH-HHHHHHHHHHHHHHHHh----ccCCeEEeeccchhhHhh
Confidence 9999999997 78999999999988764 789999999999998654
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=1.6e-18 Score=152.74 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccee-----eeeccccceeE------------eecccC-CC------cccc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV-----TSMEPNEDTFV------------LHSEST-KG------KIKP 117 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~-~~------~~~~ 117 (267)
.+..+|+++|++++|||||+++|.+........ .++......+. +..... +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356799999999999999999997642211000 00100000000 000000 11 1357
Q ss_pred EEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 118 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 118 ~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+++|||||+++|...+...+..+|++++|+|++++. ......+.+..+ .. ....|+++|+||+|+.......+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-~~~qt~e~l~~l-~~----~gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTKEHLMAL-EI----IGIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-cccchHHHHHHH-HH----cCCCeEEEEEEccccCCHHHHHHH
Confidence 999999999999888888888999999999999741 012222333322 21 123468999999999753222222
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 156 ~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 156 YEEIKEFVKGT-----------------------------VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHhhhhhc-----------------------------ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22222211100 0224579999999999 9999999998754
No 211
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=1.3e-18 Score=154.51 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eee----eccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTS----MEPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~ 114 (267)
..+..+|+++|+.++|||||+++|+.. .+.... ... -...+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356679999999999999999999852 211100 000 000112222222223444
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.+++|||||+++|.......+..+|++++|+|++++..... ....++ .+.... ...|+++|+||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~----~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL----GINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc----CCCeEEEEEEChhccCccH
Confidence 5789999999999887777777889999999999988621111 111111 122211 2357999999999974221
Q ss_pred --HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chh------------HH
Q 024474 194 --KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ------------VE 258 (267)
Q Consensus 194 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~------------l~ 258 (267)
.+...+.+++.+.... +. ...+.++++||++|+ +++ |+
T Consensus 159 ~~~~~~~~ei~~~~~~~g-------------------------~~--~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~ 211 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVG-------------------------YN--PDTVPFIPISAWNGDNVIKKSENTPWYKGKTLL 211 (426)
T ss_pred HHHHHHHHHHHHHHHHcC-------------------------CC--cccceEEEeeccccccccccccCCccccchHHH
Confidence 1122233333222110 00 134689999999999 764 77
Q ss_pred HHHHhh
Q 024474 259 QFIREQ 264 (267)
Q Consensus 259 ~~l~~~ 264 (267)
+.|.+.
T Consensus 212 ~~l~~~ 217 (426)
T TIGR00483 212 EALDAL 217 (426)
T ss_pred HHHhcC
Confidence 888653
No 212
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=1.2e-18 Score=159.48 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=93.9
Q ss_pred cCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------HHhhh--ccCCE
Q 024474 71 GLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------LDEFL--PQAAG 142 (267)
Q Consensus 71 G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~--~~~d~ 142 (267)
|++|+|||||+|++++.... +...+..+.+........++ ..+++|||||+.++... ...++ +.+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~---v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT---VGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe---ecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCE
Confidence 89999999999999987642 22222222222222222233 46899999999876543 33343 37899
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. +....+..++.+ .++|+++|+||+|+..........+.+.+
T Consensus 76 vI~VvDat~l----er~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------------------- 126 (591)
T TIGR00437 76 VVNVVDASNL----ERNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEE------------------- 126 (591)
T ss_pred EEEEecCCcc----hhhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHH-------------------
Confidence 9999999874 222333333333 57899999999998654332211122221
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ ++++++++.+.
T Consensus 127 ----------------~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 127 ----------------RLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred ----------------HcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 123578999999999 99999999764
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2.4e-18 Score=161.43 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------hhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------RPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~~~ 132 (267)
..++|+++|.+|||||||+|+|++.... .+....+++.+.......+++ ..+.+|||||+.+. ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~--~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERA--VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 4589999999999999999999987631 122233333332222222333 36789999996421 111
Q ss_pred -HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 -LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 -~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+++.+|++++|+|++++ .+.... .++..+.. .++|+++|+||+|+......+ .+++.+...
T Consensus 525 r~~~~i~~advvilViDat~~-~s~~~~-~i~~~~~~------~~~piIiV~NK~DL~~~~~~~----~~~~~~~~~--- 589 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQP-ISEQDL-KVMSMAVD------AGRALVLVFNKWDLMDEFRRQ----RLERLWKTE--- 589 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCC-CCHHHH-HHHHHHHH------cCCCEEEEEEchhcCChhHHH----HHHHHHHHh---
Confidence 12357889999999999986 334333 23333332 578999999999997532222 222222210
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ....+++++||++|+ ++++++.+.+.+
T Consensus 590 -----------------------l~~-~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 590 -----------------------FDR-VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred -----------------------ccC-CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 000 112356889999999 999998887653
No 214
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.78 E-value=3.8e-18 Score=151.56 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccc-------------e-------eee----eccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG-------------T-------VTS----MEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~-------------~-------~~~----~~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+|+++|++++|||||+++|+...- ... . ... -...+.+.......+..+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4567999999999999999999984321 100 0 000 0011222222222233445
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+.+.+|||||+++|.......++.+|++++|+|+++. ........+...+.... ...|+++|+||+|+..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~-~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA-GGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC-CCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 7899999999998877666677899999999999872 11222222222222221 2246999999999975
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=4.3e-18 Score=138.13 Aligned_cols=121 Identities=21% Similarity=0.146 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--cccc-------------e-------eeeec----cccceeEeecccCCCccccEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS--THQG-------------T-------VTSME----PNEDTFVLHSESTKGKIKPVH 119 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~--~~~~-------------~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 119 (267)
+|+++|++++|||||+.+|+... ..+. . ..... ..+.+.......+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999986321 1000 0 00000 001111111112233457899
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC----ch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP----NC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~----~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+|||||+.++.......++.+|++|+|+|+++... .. ......+ ..... ....|+++|+||+|+...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART----LGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH----cCCCeEEEEEEccccccc
Confidence 99999998887777778889999999999987410 01 1122222 12221 133689999999999743
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=1.5e-17 Score=128.71 Aligned_cols=156 Identities=23% Similarity=0.317 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------hhhHHh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------RPKLDE 135 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~~~~~~ 135 (267)
.|+++|++|+|||||+|.+.+..+......+. +.+........++ .+.+|||||+... ......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~---~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP---GKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC---CcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 37999999999999999999644322111111 1112222222222 7899999997542 233344
Q ss_pred hhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 136 FLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 136 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
++. ..+++++++|...... .....+...+.. .+.|+++|+||+|+............+...+..
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~----- 141 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPT---EIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKL----- 141 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCC---HhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-----
Confidence 444 3578999999876421 111222222321 458999999999986443333333333322221
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
......++++||++|. ++++.++|.+++
T Consensus 142 -------------------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 142 -------------------------FEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred -------------------------ccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 0223468899999999 999999998864
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=6e-18 Score=148.57 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|++.....+. ... -...+.+.......+......+.++||||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 456789999999999999999999863210000 000 001122222222223334457899999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCCH-HHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHTK-EFIRKQMEKEIDK 207 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~-~~~~~~l~~~~~~ 207 (267)
.......+..+|++++|+|+.++. .....+.+..+.. .++| +++|+||+|+...... +.+.+.+++.+..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~------~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 777777778899999999998751 2223333333322 5677 6789999998643221 1122233333322
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC--------c-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 266 (267)
+. +. ..+++++++||++| . +.+|++.|.++++
T Consensus 161 ~~-------------------------~~--~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 161 YD-------------------------FP--GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred hC-------------------------CC--cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 10 00 12468999999998 2 6788888888765
No 218
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=8.8e-18 Score=147.60 Aligned_cols=172 Identities=18% Similarity=0.205 Sum_probs=104.1
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--e-----e----eeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--T-----V----TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+.++..+|+++|++++|||||+++|++...... . . ..-...+.+.......+......+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 346678999999999999999999986210000 0 0 0000112222222222233345789999999988
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCCCC-HHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHT-KEFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~-~~~~~~~l~~~~~ 206 (267)
|.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +++||+|+..... .+.+.+.+++.+.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~--~~qt~e~l~~~~~------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chhHHHHHHHHHH------cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 8777777788999999999998751 2223333333222 567855 5799999974211 1222223333222
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~ 266 (267)
.+. + ...+++++++||++| + +.+|++.|.+.++
T Consensus 160 ~~~-------------------------~--~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYD-------------------------F--PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcC-------------------------C--CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 210 0 012468999999998 3 6788888887664
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=7.9e-18 Score=148.31 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=101.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-----eeeeccccceeEe------------ecc-cCC------Ccc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-----VTSMEPNEDTFVL------------HSE-STK------GKI 115 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-----~~~~~~~~~~~~~------------~~~-~~~------~~~ 115 (267)
+..+.++|+++|+.++|||||+.+|.+....... -.|+......+.. ... ..+ ...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4567789999999999999999999653211100 0111111000000 000 000 012
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
..+++|||||+.+|..........+|++++|+|++++. ........+. .+.. ....|+++|+||+|+.......
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-~~~~t~~~l~-~l~~----~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-PQPQTKEHLM-ALDI----IGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-CChhHHHHHH-HHHH----cCCCcEEEEEEeeccccchhHH
Confidence 57999999999888766666667789999999999741 0112222222 2221 1224689999999997543222
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 196 FIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~~~~~i~~~l~~~-----------------------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGT-----------------------------VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccc-----------------------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1122222211100 0224578999999999 9999999998765
No 220
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.1e-17 Score=143.21 Aligned_cols=164 Identities=18% Similarity=0.273 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+-|.++|+...|||||+..+.+..........+....+.+.+..... ....+.|+|||||+.|..+..+-..-+|
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~--~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI--KIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC--CCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 46678999999999999999999987765444333433334444433211 2246999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+.++ -..+..+-+. .++ ..+.|++|++||+|.... ++..+..++++.
T Consensus 81 IaILVVa~dDG--v~pQTiEAI~-hak-----~a~vP~iVAiNKiDk~~~-np~~v~~el~~~----------------- 134 (509)
T COG0532 81 IAILVVAADDG--VMPQTIEAIN-HAK-----AAGVPIVVAINKIDKPEA-NPDKVKQELQEY----------------- 134 (509)
T ss_pred EEEEEEEccCC--cchhHHHHHH-HHH-----HCCCCEEEEEecccCCCC-CHHHHHHHHHHc-----------------
Confidence 99999999986 2233333333 333 288999999999999844 444444444431
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
++.-+...+.+.++++||++|+ +++|++.|.-
T Consensus 135 ----------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 135 ----------GLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred ----------CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 1222233566899999999999 9999987753
No 221
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.75 E-value=2.1e-17 Score=135.10 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=54.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~~~ 138 (267)
+++++|++|+|||||+|+|++.... +...+.++.+.......++ +..+++|||||+.+.. .....+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhc
Confidence 7899999999999999999986531 1112211111111111112 3579999999985432 22345789
Q ss_pred cCCEEEEEEeCCCC
Q 024474 139 QAAGIVFVVDALEF 152 (267)
Q Consensus 139 ~~d~ii~v~d~~~~ 152 (267)
.+|++++|+|+++.
T Consensus 77 ~ad~il~V~D~t~~ 90 (233)
T cd01896 77 TADLILMVLDATKP 90 (233)
T ss_pred cCCEEEEEecCCcc
Confidence 99999999999875
No 222
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=1.9e-17 Score=137.67 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC--cccc-e----------eeeecc----ccceeEeecccCCCccccEEEEeCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS--THQG-T----------VTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
.++|+++|++|+|||||+++|+... ..+. . +....+ .+.++......+...++.+++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 3589999999999999999997521 1110 0 000000 011122222233455678999999999
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+|......+++.+|++|+|+|++++ .+.....+.+... ..++|+++++||+|+.....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g---~~~~~~~i~~~~~-----~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKG---VEPQTRKLFEVCR-----LRGIPIITFINKLDREGRDP 140 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCC---ccHHHHHHHHHHH-----hcCCCEEEEEECCccCCCCH
Confidence 99888888889999999999999875 2222222333333 25789999999999876543
No 223
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=2.5e-17 Score=145.28 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc--ce--e-eee------ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--GT--V-TSM------EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~~--~-~~~------~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+..+|+++|++++|||||+++|++..... .. . ... ...+.+.......+..+...+.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4566899999999999999999998642100 00 0 000 00111111111122234457899999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+..+. .....+.+. ++.. .++| +++++||+|+..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~-~~~~-----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP--MPQTKEHIL-LAKQ-----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHH-HHHH-----cCCCEEEEEEEccCCCC
Confidence 777778888999999999998751 222333333 3321 5678 778999999975
No 224
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=123.97 Aligned_cols=163 Identities=22% Similarity=0.317 Sum_probs=102.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc----------h
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL----------R 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~----------~ 130 (267)
....+-|+++|.+|||||||+|+|++++-- +.++.. .+.|...+...+++ .+.++|.||.... .
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtSkt--PGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTSKT--PGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcce-eecCCC--CCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHH
Confidence 346778999999999999999999996521 112212 24445555555554 3889999997632 2
Q ss_pred hhHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.+..+|++. ..++++++|+..+ .......+.+.+.. .++|+++|+||+|.............+.+.+..
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~---~~~~D~em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHP---PKDLDREMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCC---CcHHHHHHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 334556643 4689999999886 33333344444443 789999999999987654333222222221110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .....++..|+.++. +++|.+.|.+++.
T Consensus 167 ----------------------------~~-~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 167 ----------------------------PP-PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ----------------------------CC-CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 00 111015566777777 9999999888764
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=5.5e-17 Score=135.68 Aligned_cols=130 Identities=23% Similarity=0.243 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeee---------ccc----cceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM---------EPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+..........+. .+. ..+.......+....+.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110000001 000 00011111112233468999999999988888
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+..+++.+|++++|+|++.+ ... .....+.. +. ..++|+++|+||+|+... ......+.+++.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g-~~~-~~~~~~~~-~~-----~~~~p~iivvNK~D~~~~-~~~~~~~~l~~~ 143 (268)
T cd04170 81 TRAALRAADAALVVVSAQSG-VEV-GTEKLWEF-AD-----EAGIPRIIFINKMDRERA-DFDKTLAALQEA 143 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCC-CCH-HHHHHHHH-HH-----HcCCCEEEEEECCccCCC-CHHHHHHHHHHH
Confidence 88999999999999999886 222 22222222 22 267899999999998765 333444444443
No 226
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-17 Score=133.63 Aligned_cols=187 Identities=21% Similarity=0.236 Sum_probs=106.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------- 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------- 131 (267)
.+...|+++|.||+|||||.|.+++.+.. ..+-...+++.........+ ...+.|+||||.-.-..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~---~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVS---AVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccc---cccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHh
Confidence 45678999999999999999999998752 22333333333332222223 35899999999653211
Q ss_pred --hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH-HHHHHHHH-HHHHH
Q 024474 132 --KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK-EFIRKQME-KEIDK 207 (267)
Q Consensus 132 --~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~l~-~~~~~ 207 (267)
...+.+..||++++|+|+++....+.. ..+..+.. ...+|-++|.||+|....... -.....+. ..+..
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~-----ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEE-----YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHH-----HhcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 122466789999999999963122211 11111111 167889999999998765432 11111111 11111
Q ss_pred HHh-hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRA-SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
... ..++..... +..+......+++ --++|.+||++|+ |++|.+||....+|
T Consensus 219 ~kl~v~~~f~~~p-----~~~~~~~~~gwsh---fe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 219 LKLEVQEKFTDVP-----SDEKWRTICGWSH---FERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhhHHHHhccCC-----cccccccccCccc---ceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 000 000000000 0000000111222 2258999999999 99999999998876
No 227
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.3e-17 Score=140.71 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-----c----------eeeeeccccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----G----------TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.+++.|+.+...|||||..+|+... .+. . .--|+..++....+. +++.+.++++|||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~----~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK----DGQSYLLNLIDTP 133 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE----cCCceEEEeecCC
Confidence 466799999999999999999985421 000 0 001233333332222 3677899999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
||-+|+....+.+.-||++|+|+|++.+ -..+.... ++..++ .+..+|.|+||+|+..+ .++.+...+.+.
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qG-vqAQT~an-f~lAfe------~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l 204 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQG-VQAQTVAN-FYLAFE------AGLAIIPVLNKIDLPSA-DPERVENQLFEL 204 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcC-chHHHHHH-HHHHHH------cCCeEEEeeeccCCCCC-CHHHHHHHHHHH
Confidence 9999999999999999999999999987 22222333 333333 67789999999999866 445555544443
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+. ..+-+++-+|||+|- ++++++.|.++++|
T Consensus 205 F~--------------------------------~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 205 FD--------------------------------IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred hc--------------------------------CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 32 112267889999999 99999999999998
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=3.3e-17 Score=147.80 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-ee----------eeecc----ccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TV----------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|++|+|||||+++|+. +..... .+ ....+ .+.++......+..+++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 567999999999999999999963 211110 00 00000 01112222222344557899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+.+|......+++.+|++|+|+|++++ .+.....+..... ..++|+++++||+|+.... ..++.+.+++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~-----~~~iPiiv~iNK~D~~~a~-~~~~l~~i~~~ 158 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKG---VEPQTRKLMEVCR-----LRDTPIFTFINKLDRDGRE-PLELLDEIEEV 158 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCC---CCHHHHHHHHHHH-----hcCCCEEEEEECCcccccC-HHHHHHHHHHH
Confidence 999998888899999999999999875 2222222333333 2689999999999987654 33334444443
No 229
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.7e-17 Score=140.51 Aligned_cols=161 Identities=24% Similarity=0.339 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.+-|-|+|+...|||||+..|.+..+.......+....+.|.+... +| -+++|.|||||..|..+..+-.+.+|
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p--~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP--SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC--CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 577889999999999999999999877644433334333444554433 34 58999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+.+.++ -..+..+-+.... ..+.|+++.+||+|.+.+. ++.+.+.+-.
T Consensus 227 IvVLVVAadDG--VmpQT~EaIkhAk------~A~VpiVvAinKiDkp~a~-pekv~~eL~~------------------ 279 (683)
T KOG1145|consen 227 IVVLVVAADDG--VMPQTLEAIKHAK------SANVPIVVAINKIDKPGAN-PEKVKRELLS------------------ 279 (683)
T ss_pred EEEEEEEccCC--ccHhHHHHHHHHH------hcCCCEEEEEeccCCCCCC-HHHHHHHHHH------------------
Confidence 99999999986 2333333333332 2789999999999987554 4333333321
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
.+...+++.++++++++||++|+ ++.|.+.+.
T Consensus 280 ---------~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 280 ---------QGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred ---------cCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 22335566899999999999999 999988764
No 230
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=9.2e-17 Score=145.01 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-ee----------eeecc----ccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TV----------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.++|+++|++|+|||||+++|+. +..... .+ ....+ .+.++......++...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4667999999999999999999853 221110 00 00000 0111222223334556789999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
|+.+|......+++.+|++|+|+|++++ .......+.+.... .++|+++++||+|+... ...++.+.++..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g---v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~-~~~~ll~~i~~~ 159 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG---VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR-DPLELLDEVENE 159 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC---CCHHHHHHHHHHHh-----cCCCEEEEEECccccCC-CHHHHHHHHHHH
Confidence 9999888888899999999999999875 33333333344432 67899999999998644 344555555544
Q ss_pred H
Q 024474 205 I 205 (267)
Q Consensus 205 ~ 205 (267)
+
T Consensus 160 l 160 (527)
T TIGR00503 160 L 160 (527)
T ss_pred h
Confidence 4
No 231
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=7.2e-17 Score=141.90 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=77.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|+.++|||||+++|++.....+. ... -...+.+.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356678999999999999999999743100000 000 000112222222223334467999999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+.+..+.. .++|.+ +|+||+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~------~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ------VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCEEEEEEEecccCC
Confidence 777777778899999999998751 2222333333322 467755 6899999875
No 232
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=4.4e-17 Score=140.33 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=145.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
.......+..++.+++...++....+...++.+.+..+..++.+ .....+++++|.||+|||||+|.++....
T Consensus 121 dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsI------Dp~trTlllcG~PNVGKSSf~~~vtradv- 193 (620)
T KOG1490|consen 121 DSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAI------DPNTRTLLVCGYPNVGKSSFNNKVTRADD- 193 (620)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC------CCCcCeEEEecCCCCCcHhhccccccccc-
Confidence 45677778889999999999999999999999998888888765 78899999999999999999999887654
Q ss_pred cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----HHh----hh-ccCCEEEEEEeCCCCC-CchHHHH
Q 024474 91 QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK----LDE----FL-PQAAGIVFVVDALEFL-PNCSAAS 160 (267)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~----~~-~~~d~ii~v~d~~~~~-~~~~~~~ 160 (267)
.+..+..++..+. ...++.+..+++++||||..+.... .+. .+ .--.+|+|++|++..+ .+..+..
T Consensus 194 --evqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv 269 (620)
T KOG1490|consen 194 --EVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV 269 (620)
T ss_pred --ccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH
Confidence 3344444444333 3333555578999999997653211 111 11 1235799999998742 4677777
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
..+..+... ..+.|+|+|+||+|+.+..+..+-.+.+-+.+.. .+
T Consensus 270 kLfhsIKpL----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~-------------------------------~~ 314 (620)
T KOG1490|consen 270 KLYHSIKPL----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID-------------------------------DG 314 (620)
T ss_pred HHHHHhHHH----hcCCceEEEeecccccCccccCHHHHHHHHHHHh-------------------------------cc
Confidence 777666542 3789999999999998887766555444443332 45
Q ss_pred eeEEEEeeeccCc-chhH
Q 024474 241 KVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l 257 (267)
++.+++.|..+.+ +-++
T Consensus 315 ~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 315 NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred CceEEEecccchhceeeH
Confidence 6789999999888 5443
No 233
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=2.2e-16 Score=126.04 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhh-----hcc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF-----LPQ 139 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-----~~~ 139 (267)
.+|+++|.+|+|||||+|.|++................+....... ......+.+|||||..+.....+.| +.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 5899999999999999999998654321111111000000000000 1112368999999987543333333 567
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+|+++++.|. . +......+.+.+.. .+.|+++|+||+|+..
T Consensus 81 ~d~~l~v~~~-~----~~~~d~~~~~~l~~-----~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISST-R----FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeCC-C----CCHHHHHHHHHHHH-----hCCCEEEEEecccchh
Confidence 8998887442 2 33333333333332 4679999999999853
No 234
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.4e-16 Score=137.16 Aligned_cols=175 Identities=19% Similarity=0.162 Sum_probs=110.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCchHHHHHHH----HH---HHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACA----VL---LLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
|+.....+.+.+++.++|.+..+....+.... .. .+...+.......+-+.+..|+|+|+||+|||||+|.|.
T Consensus 210 ~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~ 289 (531)
T KOG1191|consen 210 WRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALS 289 (531)
T ss_pred HHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHh
Confidence 45555667888888899977766554442222 22 222222222223344678999999999999999999999
Q ss_pred cCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhh--------HHhhhccCCEEEEEEeCCCCC-Cc
Q 024474 86 DGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPK--------LDEFLPQAAGIVFVVDALEFL-PN 155 (267)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~--------~~~~~~~~d~ii~v~d~~~~~-~~ 155 (267)
+.+ ...++..+.++.+.....+.++| +++.+.||+|..+ -... ....+..+|++++|+|+.... .+
T Consensus 290 ~~d--rsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s 365 (531)
T KOG1191|consen 290 RED--RSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES 365 (531)
T ss_pred cCC--ceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc
Confidence 976 34566666666665555555555 7899999999876 2111 234678899999999994320 22
Q ss_pred hHHHHHHHHHHHhcCC---CCCCCCcEEEEEecCCCCCC
Q 024474 156 CSAASEYLYDILTNST---VVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 156 ~~~~~~~l~~~~~~~~---~~~~~~pvivv~nK~Dl~~~ 191 (267)
...+.+.+...-.-.. ......|++++.||.|+...
T Consensus 366 d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 366 DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred chHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2233333333222100 01145789999999999754
No 235
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=7.8e-17 Score=134.19 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--ccc-ce------eeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS--THQ-GT------VTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~--~~~-~~------~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
+|+++|++|+|||||+++|+... ... +. +....+ .+.+.......+......++++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996421 110 00 000001 011111111112234468999999999999888
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+..+++.+|++|+|+|+.++. ......+..... ..++|+++++||+|+.+. ..+...+.+++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~---~~~t~~~~~~~~-----~~~~p~ivviNK~D~~~a-~~~~~~~~l~~ 142 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV---EPQTETVWRQAD-----RYNVPRIAFVNKMDRTGA-DFFRVVEQIRE 142 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC---CHHHHHHHHHHH-----HcCCCEEEEEECCCCCCC-CHHHHHHHHHH
Confidence 999999999999999998752 222222222332 267899999999998754 33333444443
No 236
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=1.6e-16 Score=139.59 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=102.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-------eee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-------VTS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|++....... ... -...+.+.......+..+...+.++||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 456789999999999999999999863110000 000 001111222222222333457899999999888
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.......+..+|++++|+|+..+. .......+ .++.. .++|.+ +++||+|+... ++..+.+.+.+..+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~-~~~~~-----~g~p~iiVvvNK~D~~~~---~~~~~~~~~~i~~~ 157 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGP--MPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDD---EELLELVEMEVREL 157 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCC--chHHHHHH-HHHHH-----cCCCEEEEEEeecCCcch---HHHHHHHHHHHHHH
Confidence 777777888999999999998751 22222333 23322 567876 58999999642 22222233222222
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~ 266 (267)
-.... +. ..+++++++||++|. +.+|++.|.+.++
T Consensus 158 l~~~~---------------------~~--~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 158 LSKYD---------------------FP--GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHhcC---------------------CC--ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 10000 00 234678999999863 4678888887654
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.71 E-value=1.6e-16 Score=141.70 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc------ccce-e----eeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT-V----TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|+.... .... . ..-...+.+.......+..+...+.++||||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45678999999999999999999985211 0000 0 00000111111111112233458999999999998
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+++..+.. .++| +++++||+|+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~------~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEecccccC
Confidence 888788888999999999999762 2333344433322 5677 788999999965
No 238
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=9.9e-17 Score=119.02 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=123.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.-|++++|..|+|||||++.|.++.. ...+++..|+..... +. +++++-+|.+|+..-+..|..|+..+|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~-----Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~ 89 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELS-----IG--GMTFTTFDLGGHLQARRVWKDYFPQVD 89 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhe-----ec--CceEEEEccccHHHHHHHHHHHHhhhc
Confidence 4667999999999999999999988764 334555555433322 22 368999999999998999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++.+|+.+. ..+.+....+..++....+ ...|+++.+||+|...+...++.+..+. -.....+. +.
T Consensus 90 ~iv~lvda~d~-er~~es~~eld~ll~~e~l--a~vp~lilgnKId~p~a~se~~l~~~l~----l~~~t~~~----~~- 157 (193)
T KOG0077|consen 90 AIVYLVDAYDQ-ERFAESKKELDALLSDESL--ATVPFLILGNKIDIPYAASEDELRFHLG----LSNFTTGK----GK- 157 (193)
T ss_pred eeEeeeehhhH-HHhHHHHHHHHHHHhHHHH--hcCcceeecccccCCCcccHHHHHHHHH----HHHHhccc----cc-
Confidence 99999999987 6688888888777765432 7899999999999988775544433322 11111110 00
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+ ...-...+.++.||...+. .-+.+.|+..++
T Consensus 158 --v~~--------~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 158 --VNL--------TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred --ccc--------cCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 000 0011356778889999888 777888887765
No 239
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=2e-16 Score=129.43 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHH
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLD 134 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~ 134 (267)
...+.++|.||+|||||+|+|...+.. ....+|..|+.++.. +++. ..+.+-|.||..+-.. ..-
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~-----yddf-~q~tVADiPGiI~GAh~nkGlG~~FL 269 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVN-----YDDF-SQITVADIPGIIEGAHMNKGLGYKFL 269 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceee-----cccc-ceeEeccCccccccccccCcccHHHH
Confidence 447889999999999999999986531 122344555544322 2222 2499999999764332 244
Q ss_pred hhhccCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 135 EFLPQAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+++.+|+.++||+|++.+. +.++.......++ +.......+.|.++|+||+|+..+. .+.+++...++
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL-e~yek~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~l---- 339 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL-ELYEKGLADRPALIVANKIDLPEAE-----KNLLSSLAKRL---- 339 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHHHHHHHH-HHHhhhhccCceEEEEeccCchhHH-----HHHHHHHHHHc----
Confidence 6788899999999998751 1233333322222 2111123788999999999986221 11122222221
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+..++++||++|+ +++|++.|++.+
T Consensus 340 ---------------------------q~~~V~pvsA~~~egl~~ll~~lr~~~ 366 (366)
T KOG1489|consen 340 ---------------------------QNPHVVPVSAKSGEGLEELLNGLRELL 366 (366)
T ss_pred ---------------------------CCCcEEEeeeccccchHHHHHHHhhcC
Confidence 12258999999999 999999998753
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.71 E-value=3.3e-16 Score=139.18 Aligned_cols=170 Identities=19% Similarity=0.201 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+|+++|+.++|||||+.+|+.. ...... .... ...+.+............
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45678999999999999999998651 111000 0000 001112222222234455
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--ch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..++|+||||+.+|.......+..+|++++|+|+..+.- .+ ....+.+. ++.. .++| +|+++||+|..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~-----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT-----LGVKQMIVCINKMDDK 158 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH-----cCCCeEEEEEEccccc
Confidence 789999999999998888888999999999999987510 00 12333333 2221 5665 67999999954
Q ss_pred CCC----CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch---------
Q 024474 190 TAH----TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS--------- 255 (267)
Q Consensus 190 ~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~--------- 255 (267)
... ..+++.+.+...+..+. +. ..+++++++||.+|+ +.
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g-------------------------~~--~~~~~~ipiSa~~g~ni~~~~~~~~Wy 211 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVG-------------------------YN--PEKVPFIPISGWQGDNMIEKSDNMPWY 211 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcC-------------------------CC--cccceEEEeecccCCCcccCCCCCccc
Confidence 321 12223333333222210 00 135789999999999 75
Q ss_pred ---hHHHHHHhh
Q 024474 256 ---QVEQFIREQ 264 (267)
Q Consensus 256 ---~l~~~l~~~ 264 (267)
.|++.|.+.
T Consensus 212 ~G~tL~~~l~~~ 223 (446)
T PTZ00141 212 KGPTLLEALDTL 223 (446)
T ss_pred chHHHHHHHhCC
Confidence 388887664
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1.2e-16 Score=140.78 Aligned_cols=119 Identities=19% Similarity=0.158 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC--ccc-------------ce---------eeeecc----ccceeEeecccCCCccc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS--THQ-------------GT---------VTSMEP----NEDTFVLHSESTKGKIK 116 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~--~~~-------------~~---------~~~~~~----~~~~~~~~~~~~~~~~~ 116 (267)
.+|+++|++++|||||+++|+... ... +. .....+ .+.+.............
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 379999999999999999986432 110 00 000000 01111111112233446
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
++.++||||+.+|.......+..+|++++|+|+..+.. ....+ ...+.... ...++++|+||+|+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~-~~~~~~~~----~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRR-HSYIASLL----GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHH-HHHHHHHc----CCCcEEEEEEeccccc
Confidence 89999999999987777778889999999999987521 11111 12222211 2236899999999974
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=2.4e-16 Score=139.82 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc----cccee---ee----eccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST----HQGTV---TS----MEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~----~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.++..+|+++|++++|||||+++|.+... ..... .. -...+.+.......+......+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 45678999999999999999999973210 00000 00 000122222222223334467999999999988
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVT 190 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~ 190 (267)
.......+..+|++++|+|+.++. .....+.+. ++.. .++| +++++||+|+..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~-~~~~-----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP--MPQTKEHIL-LARQ-----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHH-HHHH-----cCCCeEEEEEEeeccCC
Confidence 777767777899999999998751 222223232 3322 5678 578999999974
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=8.2e-16 Score=137.65 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=75.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-------------cee---------eeec----cccceeEeecccCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-------------GTV---------TSME----PNEDTFVLHSESTK 112 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-------------~~~---------~~~~----~~~~~~~~~~~~~~ 112 (267)
.+...+|+++|++++|||||+++|+... ... +.. .... ..+.+.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4677899999999999999999987532 111 000 0000 00111112112223
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.....+.++||||+.+|.......+..+|++++|+|+..+... ..... ..+.... ...|+++|+||+|+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~--qt~~~-~~l~~~l----g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD--QTRRH-SFIATLL----GIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc--cchHH-HHHHHHh----CCCceEEEEEeecccc
Confidence 3446899999999998876666678999999999999875211 11111 1122110 2247899999999974
No 244
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.70 E-value=2.6e-16 Score=147.34 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeec-------------cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME-------------PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+|+|++|+|||||+++|+...-......... ..+.+.......+...+..+++|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3567999999999999999999974221000000000 011111111122223346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+......+++.+|++++|+|+.++ ...+ ....+. .+. ..++|+++|+||+|+..+. .....+.+.+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g-~~~~-~~~~~~-~~~-----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~ 153 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGG-VQPQ-SETVWR-QAN-----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQ 153 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCC-CChh-HHHHHH-HHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 888888999999999999999875 2222 222222 222 2578999999999998643 3344444443
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=3.8e-16 Score=138.41 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=105.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-------ceeeeeccccce------------e-Eeeccc-----C--CC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------GTVTSMEPNEDT------------F-VLHSES-----T--KG 113 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-------~~~~~~~~~~~~------------~-~~~~~~-----~--~~ 113 (267)
+....+|+++|+...|||||+.+|++....+ +.+......... + ...... . .+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 4677899999999999999999999743211 111011000000 0 000000 0 00
Q ss_pred ----ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 114 ----KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 114 ----~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
....+.++||||+++|.......+..+|++++|+|+.++ .......+.+. ++... .-.|+++|+||+|+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g-~~~~qT~ehl~-i~~~l----gi~~iIVvlNKiDlv 184 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES-CPQPQTSEHLA-AVEIM----KLKHIIILQNKIDLV 184 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC-ccchhhHHHHH-HHHHc----CCCcEEEEEeccccc
Confidence 013689999999998877777778899999999999874 11122223332 22211 224689999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+.....+..+.+.+.+... ....++++++||++|+ +++|+++|.++++|
T Consensus 185 ~~~~~~~~~~ei~~~l~~~-----------------------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGT-----------------------------IADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CHHHHHHHHHHHHHHHHhh-----------------------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 5333333333333322210 0234579999999999 99999999987764
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=5.1e-16 Score=137.86 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=79.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--cccce--------------------eeee----ccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTSM----EPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~ 114 (267)
.++..+|+++|+.++|||||+.+|+... ..+.. .... ...+.+...........
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3456789999999999999999886421 11000 0000 00122222222223445
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCch-------HHHHHHHHHHHhcCCCCCCCC-cEEEEEecC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNC-------SAASEYLYDILTNSTVVKKKI-PVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~ 186 (267)
...++++||||+.+|.......+..+|++|+|+|+.++ .+ ....+.+.. .. ..++ ++++++||+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G--~~e~g~~~~~qT~eh~~~-~~-----~~gi~~iIV~vNKm 155 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG--GFEAGISKDGQTREHALL-AF-----TLGVKQMICCCNKM 155 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC--ceecccCCCchHHHHHHH-HH-----HcCCCcEEEEEEcc
Confidence 57899999999999999999999999999999999874 22 233333322 22 1456 478899999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|+.
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 986
No 247
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=2.3e-15 Score=127.80 Aligned_cols=156 Identities=23% Similarity=0.315 Sum_probs=105.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc--cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc---------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH--QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL--------- 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~--------- 129 (267)
...-+.|.++|..|+|||||+|+|++.... +.-..|..|++....... +..+.+-||-|+-+-
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~------g~~vlLtDTVGFI~~LP~~LV~AF 262 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD------GRKVLLTDTVGFIRDLPHPLVEAF 262 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC------CceEEEecCccCcccCChHHHHHH
Confidence 356789999999999999999999976542 122345666655544331 357999999997542
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
++..+ -...+|+++.|+|++++ . ......-..+++..... ..+|+|+|.||+|+...... ...+. .
T Consensus 263 ksTLE-E~~~aDlllhVVDaSdp-~-~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~---~~~~~----~-- 328 (411)
T COG2262 263 KSTLE-EVKEADLLLHVVDASDP-E-ILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEI---LAELE----R-- 328 (411)
T ss_pred HHHHH-HhhcCCEEEEEeecCCh-h-HHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhh---hhhhh----h--
Confidence 22222 23579999999999997 3 44444444555554332 56899999999998754330 00000 0
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+ ..+.+||++|+ ++.|++.|.+.++
T Consensus 329 -----------------------------~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 329 -----------------------------GSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred -----------------------------cCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 111 46889999999 9999999988764
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=3.6e-16 Score=145.13 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccc------------ee--eeec------------cccceeEeecccC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQG------------TV--TSME------------PNEDTFVLHSEST 111 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~------------~~--~~~~------------~~~~~~~~~~~~~ 111 (267)
..++..+|+++|++++|||||+++|+...- ... .. .++. ..+.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345678999999999999999999986421 100 00 0000 0011111111122
Q ss_pred CCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 112 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
......+.++||||+.+|.......+..+|++++|+|+..+.. ....+.+. ++.. ....|+++|+||+|+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~--~~t~e~~~-~~~~----~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL--TQTRRHSF-IASL----LGIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc--ccCHHHHH-HHHH----hCCCeEEEEEEeccccc
Confidence 2334578999999998877666667889999999999987521 11111111 1221 12357889999999964
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=3.1e-16 Score=147.08 Aligned_cols=134 Identities=25% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc------c-eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ------G-TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~------~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|+.|+|||||+++|+...- .. . ...+..+ .+.+..............+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3567999999999999999999975321 00 0 0000000 01111111112233457899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
|...+..+++.+|++++|+|++++ ..... ...+..+ . ..++|+++|+||+|+... ......+.++..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~-~~~~~-~~~~~~~-~-----~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 152 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTG-VQPQT-ETVWRQA-D-----RYGIPRLIFINKMDRVGA-DLFKVLEDIEER 152 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCC-CCHHH-HHHHHHH-H-----hcCCCEEEEEECCCCCCC-CHHHHHHHHHHH
Confidence 999999999999999999999886 23332 2222222 2 257899999999999865 333333444433
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=4.8e-16 Score=139.53 Aligned_cols=152 Identities=25% Similarity=0.274 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+..+++++|+||+|||||+|+|++.+. .+...+..+.+...... ..++..++++|.||.-+..+ ..++|
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~--~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKL--KYKGHEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEE--EecCceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 345799999999999999999999765 44444433333333333 33335799999999654432 24445
Q ss_pred hc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+. ..|+++-|+|+++- +.......++++ .+.|++++.|++|........--.+.+++
T Consensus 77 ll~~~~D~ivnVvDAtnL----eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~----------- 135 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL----ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSK----------- 135 (653)
T ss_pred HhcCCCCEEEEEcccchH----HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHH-----------
Confidence 43 47999999999984 444444445554 78999999999998766554444444444
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ ++++++.+.+.
T Consensus 136 ------------------------~LGvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 136 ------------------------LLGVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ------------------------HhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 345689999999999 99999888764
No 251
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=1.2e-15 Score=123.34 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----hHHhhhccC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----KLDEFLPQA 140 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~~~~~~~~ 140 (267)
||+++|+.++||||+.+.+..+-.+.. +....+|.. ....... ......+++||+||+..+-. ..+..++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~-ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTID-VEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----S-EEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCC-ceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 799999999999999999887653322 222333322 1111111 12336899999999976543 356788999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|||+|+... .......++...+.......+++.+.|+++|+|+..+....+..+...+.+.+.-....
T Consensus 78 ~~LIyV~D~qs~--~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~------- 148 (232)
T PF04670_consen 78 GVLIYVFDAQSD--DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG------- 148 (232)
T ss_dssp SEEEEEEETT-S--TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred CEEEEEEEcccc--cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc-------
Confidence 999999999853 24444444444443322234789999999999998765555555555555443321100
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
...+.|+.+|-.+..+-+-..-+...+
T Consensus 149 ------------------~~~~~~~~TSI~D~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 149 ------------------IEDITFFLTSIWDESLYEAWSKIVQKL 175 (232)
T ss_dssp -------------------TSEEEEEE-TTSTHHHHHHHHHHHTT
T ss_pred ------------------ccceEEEeccCcCcHHHHHHHHHHHHH
Confidence 114678889988876433333333333
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=8.4e-16 Score=131.80 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cc-----ccee----------eeeccccceeEeecccCCCccccEEEEeCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH-----QGTV----------TSMEPNEDTFVLHSESTKGKIKPVHLVDVP 124 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~-----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp 124 (267)
.+.+++.|+.+-..|||||..||+... .. .... -|+..+.....+. .-+++.+.++++|||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk--~~~g~~Y~lnlIDTP 84 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYK--AKDGETYVLNLIDTP 84 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEE--eCCCCEEEEEEcCCC
Confidence 345689999999999999999986421 00 0000 1233333322222 225677999999999
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
||-+|.-...+.+.-|.+.++|+|++.+ -..+.+...+. .+. .+..++-|+||+||+.+ +++.++++++..
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQG-veAQTlAN~Yl-Ale------~~LeIiPViNKIDLP~A-dpervk~eIe~~ 155 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYL-ALE------NNLEIIPVLNKIDLPAA-DPERVKQEIEDI 155 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccc-hHHHHHHHHHH-HHH------cCcEEEEeeecccCCCC-CHHHHHHHHHHH
Confidence 9999999999999999999999999987 22333333332 222 56779999999999754 566666666654
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
+. -..-..+.||||+|. |+++++.|.+++||
T Consensus 156 iG--------------------------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 156 IG--------------------------------IDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred hC--------------------------------CCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 33 112246789999999 99999999999987
No 253
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.67 E-value=5.2e-15 Score=108.39 Aligned_cols=129 Identities=21% Similarity=0.322 Sum_probs=89.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCc-hhhHHhhhc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRL-RPKLDEFLP 138 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~~~~ 138 (267)
-.+..|++++|.-++|||+++.+|..++... -+...|+..+ +........+..-.+.++||+|.... ..+-.+|++
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~--~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVP--GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCC--CCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 3567899999999999999999998765322 1223333333 33333333454457999999998877 455667888
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
-+|++++|||..+. .+++.....-.++-+.. .+..+||++.+||+|+..+...
T Consensus 84 ~aDafVLVYs~~d~-eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 84 FADAFVLVYSPMDP-ESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred cCceEEEEecCCCH-HHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhc
Confidence 99999999999987 56665433333332222 2478999999999999755443
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=2.2e-15 Score=109.99 Aligned_cols=107 Identities=23% Similarity=0.314 Sum_probs=68.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---------hHHhh
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------KLDEF 136 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------~~~~~ 136 (267)
+|+++|.+|+|||||+|+|++... ..+....+++..........++ ..+.++||||..+... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 689999999999999999998542 1233333333333332222333 4678999999865311 12334
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
+..+|++++|+|+.+. .......+.+.++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~---~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNP---ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSH---SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCC---CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 5789999999997663 2222222222222 67899999998
No 255
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=1.9e-15 Score=128.28 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=55.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeec----------------ccCCC-ccccEEEEeCCCC-
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHS----------------ESTKG-KIKPVHLVDVPGH- 126 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~l~DtpG~- 126 (267)
|+++|.||+|||||+|+|++.....+. -+++.|+.+...... ...++ ..+.+++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642111 133344433222211 00122 3367999999998
Q ss_pred ---CCchhhHHh---hhccCCEEEEEEeCCC
Q 024474 127 ---SRLRPKLDE---FLPQAAGIVFVVDALE 151 (267)
Q Consensus 127 ---~~~~~~~~~---~~~~~d~ii~v~d~~~ 151 (267)
.++..+... +++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444344 5899999999999974
No 256
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.65 E-value=8.6e-16 Score=112.75 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=121.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
-..||.++|++..|||||+-.+.++.+.+....+. +..+......+.+..+.+.+||..|++++..+.+-...++-+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~---GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTL---GVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHh---CccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 45699999999999999999999988654444333 334455555566777899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
++|+||.+.+ +.+....+|+.+..... +..+| |+|++|-|+.-..+++... .+.+....+-.
T Consensus 96 IlFmFDLt~r-~TLnSi~~WY~QAr~~N---ktAiP-ilvGTKyD~fi~lp~e~Q~-~I~~qar~YAk------------ 157 (205)
T KOG1673|consen 96 ILFMFDLTRR-STLNSIKEWYRQARGLN---KTAIP-ILVGTKYDLFIDLPPELQE-TISRQARKYAK------------ 157 (205)
T ss_pred EEEEEecCch-HHHHHHHHHHHHHhccC---Cccce-EEeccchHhhhcCCHHHHH-HHHHHHHHHHH------------
Confidence 9999999997 78999999999887753 35666 6899999987665554332 22222222110
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+...+.||+...- +..++..+-.+
T Consensus 158 ----------------~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 158 ----------------VMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred ----------------HhCCcEEEeeccccccHHHHHHHHHHH
Confidence 223456778887776 88877765443
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=2e-15 Score=141.32 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccc-e------eeeec----cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-T------VTSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-~------~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+|+|++++|||||+++|+... .... . ..+.. ..+.+...........+..++++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 456799999999999999999997421 1000 0 00000 001111111111222346899999999998
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+...+...++.+|++|+|+|+.++ .......+...+. ..++|+++++||+|+.... .....+.+++.+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g---~~~qt~~i~~~~~-----~~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l 153 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSG---VEPQSETVWRQAD-----KYGVPRIVFVNKMDRIGAD-FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCC---CCHHHHHHHHHHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 888888999999999999999876 2222223333332 2678999999999998643 334444444433
No 258
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.64 E-value=1.2e-14 Score=123.45 Aligned_cols=208 Identities=20% Similarity=0.185 Sum_probs=119.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc-
Q 024474 11 EGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST- 89 (267)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~- 89 (267)
+..+..+..-+..++++++.+++..+..... +..++..+.. ...+...|.|.|+||+|||||++.|...-.
T Consensus 11 ~l~~~~~~g~~~a~a~~it~~e~~~~~~~~~--~~~l~~~~~~------~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 11 ELVEGVLAGDRAALARAITLVESTRPDHRAL--AQELLDALLP------HTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCchhhHH--HHHHHHHHhh------cCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444445788999999999987753211 1122222211 134667899999999999999998643110
Q ss_pred --ccceeeeeccccc---------------------eeEeecc-----------------cCCCccccEEEEeCCCCCCc
Q 024474 90 --HQGTVTSMEPNED---------------------TFVLHSE-----------------STKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 90 --~~~~~~~~~~~~~---------------------~~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~ 129 (267)
..-.+.+.+|... .+..... ..+..++.+.|+||+|...-
T Consensus 83 ~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs 162 (332)
T PRK09435 83 QGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQS 162 (332)
T ss_pred CCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccc
Confidence 0111112222111 0111100 01223478999999998743
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
... ....+|.++++.++..+ +.+.....- ++. +.-++|+||+|+............+.+.+....
T Consensus 163 ~~~---i~~~aD~vlvv~~p~~g-d~iq~~k~g---i~E--------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~ 227 (332)
T PRK09435 163 ETA---VAGMVDFFLLLQLPGAG-DELQGIKKG---IME--------LADLIVINKADGDNKTAARRAAAEYRSALRLLR 227 (332)
T ss_pred hhH---HHHhCCEEEEEecCCch-HHHHHHHhh---hhh--------hhheEEeehhcccchhHHHHHHHHHHHHHhccc
Confidence 222 45679999999875544 334333321 222 123899999999865544444444444333210
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .-....+++.+||++|+ +++|.++|.++++
T Consensus 228 ~~-------------------------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 228 PK-------------------------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred cc-------------------------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00 00112368899999999 9999999998753
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.64 E-value=5.5e-15 Score=117.94 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHH---
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLD--- 134 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~--- 134 (267)
.+|+++|.+|+|||||+|.|++......... ..+.+..........++ ..+.++||||..+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 3799999999999999999998764221110 11112211111111223 5799999999876421 111
Q ss_pred -hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 135 -EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 135 -~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
....+.|++|+|+|+...........+++.+++.. ..-.++++|+|+.|.......++.
T Consensus 78 ~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~----~~~~~~ivv~T~~d~l~~~~~~~~ 137 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE----KVLDHTIVLFTRGDDLEGGTLEDY 137 (196)
T ss_pred HhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh----HhHhcEEEEEECccccCCCcHHHH
Confidence 12357899999999887433444555555555432 123578999999997765544443
No 260
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.64 E-value=6.2e-15 Score=126.21 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cccce-ee--ee------ccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT-VT--SM------EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~-~~--~~------~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+-++|+|+.+...|||||+..|+.+. |.... +. -+ ...+-+...+...+.++.++++++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45689999999999999999998643 21111 00 01 1113334444455566778999999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
..++.+.-.|++++++|+.++ .+.+..-.+...+. .+.+.|||+||+|...+++.+.+.+.+. .+..+...
T Consensus 84 EVERvl~MVDgvlLlVDA~EG--pMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~vfD-Lf~~L~A~ 154 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDEVFD-LFVELGAT 154 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC--CCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHHHHH-HHHHhCCC
Confidence 999999999999999999986 25555555555554 5677799999999988766544443333 33332211
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----------c-chhHHHHHHhhcCC
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----------E-ISQVEQFIREQVKP 267 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~-i~~l~~~l~~~~~p 267 (267)
.. ....+++-.||+.| + +..|++.|.+|+++
T Consensus 155 de-------------------------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 155 DE-------------------------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred hh-------------------------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 11 22335666788765 2 88999999999875
No 261
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.6e-16 Score=117.55 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++++++|..|.||||++++...+.|...+..+.+.. ..-.....+...+++..|||+|++.+......|+-+..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~---~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qc 85 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVE---VHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQC 85 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeE---EeeeeeecccCcEEEEeeecccceeecccccccEEecce
Confidence 46799999999999999999999998865554444221 111111112234799999999999999999999989999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
.+++||++.. -.+.....|-+++.+.+ .++|+++++||.|.......
T Consensus 86 AiimFdVtsr-~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~~k---------------------------- 132 (216)
T KOG0096|consen 86 AIIMFDVTSR-FTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARKVK---------------------------- 132 (216)
T ss_pred eEEEeeeeeh-hhhhcchHHHHHHHHHh----cCCCeeeeccceeccccccc----------------------------
Confidence 9999999876 56788889999888754 67999999999997643211
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|-. ..+..+++.||++.- .+.=+-||..++
T Consensus 133 -------~k~v~~~r-kknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 133 -------AKPVSFHR-KKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred -------cccceeee-cccceeEEeecccccccccchHHHhhhh
Confidence 00111111 457789999999887 887788887654
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.63 E-value=2.9e-15 Score=140.25 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-eee------ee----ccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-TVT------SM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-~~~------~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|+. +..... .+. +. ...+.+...........+..++++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999973 111000 000 00 0001111111111222346899999999998
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|.......++.+|++|+|+|+..+ .......+...+. ..++|+++++||+|+..+. .....+.+++.+
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g---~~~qt~~~~~~~~-----~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l 155 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGG---VEPQSETVWRQAD-----KYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRL 155 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCC---cchhhHHHHHHHH-----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 877788889999999999999876 2222222333332 2678999999999998644 334444444433
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=8.2e-14 Score=125.01 Aligned_cols=114 Identities=18% Similarity=0.304 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCCCc-----hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRL-----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+.++||||.... .......+..+|+|+||+|+... .......+.+.+... ..+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~---~s~~DeeIlk~Lkk~---~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL---KSISDEEVREAILAV---GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC---CChhHHHHHHHHHhc---CCCCCEEEEEEcccCCC
Confidence 46889999998642 22344578999999999999874 112222333433321 12359999999999864
Q ss_pred CCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 191 AHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 191 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
... .+.+.+.+...+... ......++++||++|. ++.|++.|.++
T Consensus 304 reeddkE~Lle~V~~~L~q~-----------------------------~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKG-----------------------------CITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cccchHHHHHHHHHHHHHhc-----------------------------CCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 322 333333333222210 0123368999999999 99999999875
No 264
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.61 E-value=6.9e-15 Score=129.09 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|+.|+|||||+-.|+...++++..... ..+.++ ..+....+...++||+...+-+.....-++++|
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl----~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL----PRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccC----CccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 456799999999999999999999998765432222 222222 222333467899999877776677788899999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
++.+||+.++. .+++.+...+..++++..-...++|||+|+||+|.......
T Consensus 82 vi~lvyavd~~-~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 82 VICLVYAVDDE-STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEEEEecCCh-HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 99999999986 56766654444444433223478999999999999766543
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.61 E-value=1.6e-14 Score=120.88 Aligned_cols=135 Identities=14% Similarity=0.276 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceee------eeccccceeEe--ecccCCCccccEEEEeCCCCCCchhh---
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------SMEPNEDTFVL--HSESTKGKIKPVHLVDVPGHSRLRPK--- 132 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~--- 132 (267)
.++|+++|.+|+|||||+|+|++..+...... ...++ ..... .....++..+.+++|||||+.+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T-~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKT-VEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCc-eEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999998875332110 01111 11111 11122455578999999997654221
Q ss_pred H-----------H------------hhhc--cCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 133 L-----------D------------EFLP--QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 133 ~-----------~------------~~~~--~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+ . ..+. ++|+++|+++.+.. .+... ...+..+ . ..+|+++|+||+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~--~l~~~D~~~lk~l-~------~~v~vi~VinK~ 153 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH--GLKPLDIEFMKRL-S------KRVNIIPVIAKA 153 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC--CCCHHHHHHHHHH-h------ccCCEEEEEECC
Confidence 1 0 1111 47889999998752 23333 2223322 2 358999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
|+..........+.+.+.+...
T Consensus 154 D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 154 DTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred CcCCHHHHHHHHHHHHHHHHHc
Confidence 9976444445555555555544
No 266
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.59 E-value=9.6e-14 Score=114.32 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-------hhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-------PKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-------~~~~~~ 136 (267)
...++++|+|++|||||+++|++... .+.+++.++.+.. ......++..+++.|+||.-.-. ...-..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~V--PG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPV--PGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccc--cceEeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence 35899999999999999999998653 2333433322211 12224455789999999965322 223456
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~ 164 (267)
.+.||++++|+|+.......+.+...++
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe 165 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELE 165 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHH
Confidence 7899999999999875222333444333
No 267
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=6e-14 Score=113.32 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=92.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKL 133 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~ 133 (267)
.....+++++|..|+|||||+|+|..++..... .....+.........+++ -.+.+|||||.++ ++...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 456778999999999999999999976543222 121111111122223344 3689999999876 56667
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---------CCHHHHHHHHHHH
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---------HTKEFIRKQMEKE 204 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~l~~~ 204 (267)
..++...|.+++++++.++ .+..-..++.++.... .+.|+++++|.+|.... .....+++.+++.
T Consensus 112 ~d~l~~~DLvL~l~~~~dr--aL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDR--ALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHhhhccEEEEeccCCCc--cccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 7889999999999999885 2444455566666532 45899999999997644 2234455666655
Q ss_pred HHHH
Q 024474 205 IDKL 208 (267)
Q Consensus 205 ~~~~ 208 (267)
.+.+
T Consensus 186 ~~~~ 189 (296)
T COG3596 186 AEAL 189 (296)
T ss_pred HHHH
Confidence 5544
No 268
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=3e-14 Score=135.98 Aligned_cols=174 Identities=19% Similarity=0.188 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-------------CccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 75 SGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-------------GKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 75 ~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++||||+.+|.+..........+....+.+.++..... .+.-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 46999999999887655443333333333333221110 01124899999999999888888888999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-------HHHHHHHHHHHHHHHHhh---
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-------KEFIRKQMEKEIDKLRAS--- 211 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-------~~~~~~~l~~~~~~~~~~--- 211 (267)
++++|+|++++ +..........+.. .++|+++|+||+|+..... ...+..+.++.++.+...
T Consensus 552 ivlLVVDa~~G---i~~qT~e~I~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEG---FKPQTIEAINILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECccc---CCHhHHHHHHHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999874 12222222223332 5689999999999964321 011111111111111111
Q ss_pred -hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 212 -RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...+...+..... ....++....+.++++||+||+ |++|.++|..
T Consensus 624 v~~~L~~~G~~~e~-------~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 624 LIGKLYELGFDADR-------FDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HhhHHHhcCcchhh-------hhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0011111111000 0112334678899999999999 9999999864
No 269
>PRK13768 GTPase; Provisional
Probab=99.57 E-value=3.4e-14 Score=117.45 Aligned_cols=138 Identities=22% Similarity=0.261 Sum_probs=75.9
Q ss_pred cEEEEeCCCCCCc---hhhHHh---hhcc--CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 117 PVHLVDVPGHSRL---RPKLDE---FLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 117 ~~~l~DtpG~~~~---~~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+|||||+.++ +..... ++.. ++++++|+|++...+.......++...... ...++|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~---~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ---LRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH---HHcCCCEEEEEEhHhh
Confidence 6899999998663 333333 2333 899999999976422222222222221111 0267899999999999
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 189 VTAHTKEFIRKQMEK---EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 189 ~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
......+...+.+.. .+..+....... ......+ .-...+.....+++++||++|+ +++|.+||.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~~-------~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQ--GLLSLEL-------LRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchH--HHHHHHH-------HHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 876555444443331 111111100000 0000000 0001111223578999999999 99999999998
Q ss_pred cC
Q 024474 265 VK 266 (267)
Q Consensus 265 ~~ 266 (267)
++
T Consensus 246 l~ 247 (253)
T PRK13768 246 FC 247 (253)
T ss_pred cC
Confidence 74
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=119.04 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~ 138 (267)
-|.++|.||+|||||++.+...+. .+..++.|+-.-..-.+.+. ..-.+.+-|.||.-+-.+ ..-+++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 578999999999999999988653 33333333222222222221 223699999999764322 3556788
Q ss_pred cCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 139 QAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
++.++++|+|++... +-.+.......++.... ..-.++|.++|+||+|+..+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~-~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS-PKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh-HHhccCceEEEEeccCCCcC
Confidence 999999999998641 12333333333332221 12368899999999996543
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.2e-14 Score=118.69 Aligned_cols=162 Identities=22% Similarity=0.211 Sum_probs=97.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------ee----eeccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VT----SMEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~ 115 (267)
.+..+++++|+.++|||||+-+|+.. .++... +. +-...+.+.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 56679999999999999999998542 111100 00 00111223333333344455
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
+.++++|+||+.+|-.....-..+||+.|+|+|+..++ .. .....+.+.-.... .-..+||++||+|+..
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLVS 159 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccccc
Confidence 68999999999999888888889999999999998751 01 11122222111111 2345899999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
-. ++..+++...+..+..... |. ..++.|+++||.+|+
T Consensus 160 wd--e~rf~ei~~~v~~l~k~~G---------------------~~--~~~v~FIPiSg~~G~ 197 (428)
T COG5256 160 WD--EERFEEIVSEVSKLLKMVG---------------------YN--PKDVPFIPISGFKGD 197 (428)
T ss_pred cC--HHHHHHHHHHHHHHHHHcC---------------------CC--ccCCeEEecccccCC
Confidence 32 2222333333333221111 11 236789999999998
No 272
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.55 E-value=2e-13 Score=115.80 Aligned_cols=193 Identities=19% Similarity=0.217 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc---eeeee
Q 024474 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSM 97 (267)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~ 97 (267)
+..++++++.+++..+. +...+..+.. .......|+|+|++|+|||||++.+...-...+ .+...
T Consensus 3 ~~~~~~~~~~~e~~~~~------~~~~~~~~~~------~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~ 70 (300)
T TIGR00750 3 RRALARAITLVENRHPE------AKQLLDRIMP------YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAV 70 (300)
T ss_pred HHHHHHHHHHHhCCChH------HHHHHHhCCc------ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45789999999988765 2222333221 135678899999999999999998754210000 00001
Q ss_pred cccc---------------------ceeEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 98 EPNE---------------------DTFVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 98 ~~~~---------------------~~~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
++.. ..+..... ..+..++.+.|+||+|.... ....+..
T Consensus 71 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~ 147 (300)
T TIGR00750 71 DPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANM 147 (300)
T ss_pred CCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHh
Confidence 1000 00000000 01223578999999996532 2235667
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|.++++.+...+ .++......+ .++|.++|+||+|+............+...+..+. .
T Consensus 148 aD~i~vv~~~~~~----~el~~~~~~l--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~-------~-- 206 (300)
T TIGR00750 148 ADTFVVVTIPGTG----DDLQGIKAGL--------MEIADIYVVNKADGEGATNVTIARLMLALALEEIR-------R-- 206 (300)
T ss_pred hceEEEEecCCcc----HHHHHHHHHH--------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcc-------c--
Confidence 8888888654433 2332222222 34677999999999755432222222221111110 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... ....+++++||++|+ +++|.++|.++.
T Consensus 207 ---------~~~-------~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 207 ---------RED-------GWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred ---------ccc-------CCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 000 011258999999999 999999998763
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.54 E-value=5.9e-14 Score=112.86 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=114.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc---CCcccceeeeeccccceeEeecc----------------------------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD---GSTHQGTVTSMEPNEDTFVLHSE---------------------------- 109 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 109 (267)
..+...|+++|..|+||||++.+|.. .+..+.++...+|-....++...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45667899999999999999999854 22222333333332111111000
Q ss_pred -----------c-C--CCccccEEEEeCCCCCCch------hhHHhhh--ccCCEEEEEEeCCCCCC--chHHHHHHHHH
Q 024474 110 -----------S-T--KGKIKPVHLVDVPGHSRLR------PKLDEFL--PQAAGIVFVVDALEFLP--NCSAASEYLYD 165 (267)
Q Consensus 110 -----------~-~--~~~~~~~~l~DtpG~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~~--~~~~~~~~l~~ 165 (267)
. + ........++||||+.+.- ..+-..+ ...-+++||+|.....+ .+-.---+...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 0 0 1122468899999986521 1111222 23458899999765322 23222333344
Q ss_pred HHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEE
Q 024474 166 ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVA 245 (267)
Q Consensus 166 ~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (267)
++- +...|.|+|.||+|+.+..-..++...++..-+.+....+..-. .-.....+.++++..+++.+
T Consensus 176 ily-----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s--------~l~~SmSL~leeFY~~lrtv 242 (366)
T KOG1532|consen 176 ILY-----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMS--------NLTRSMSLMLEEFYRSLRTV 242 (366)
T ss_pred HHH-----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhH--------HhhhhHHHHHHHHHhhCceE
Confidence 443 47899999999999998877777777766655555431111000 00112234566778889999
Q ss_pred EeeeccCc-chhHHHHHHhhc
Q 024474 246 EASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 246 ~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+||.+|+ +++++..+.+.+
T Consensus 243 ~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 243 GVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred EEecccCCcHHHHHHHHHHHH
Confidence 99999999 999988876643
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=5.9e-14 Score=131.54 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=77.6
Q ss_pred EcCCCCCHHHHHHHHHcCCcc--c-c------eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 70 AGLSGSGKTVLFYQLRDGSTH--Q-G------TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~--~-~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
+|++|+|||||+++|+...-. . . ....... .+.+...........++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999643210 0 0 0000000 0111111111222344789999999999888888899
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
++.+|++++|+|++.+ ... .....+..+.. .++|+++|+||+|+.... .....+.+++
T Consensus 81 l~~aD~vllvvd~~~~-~~~-~~~~~~~~~~~------~~~p~iiv~NK~D~~~~~-~~~~~~~l~~ 138 (668)
T PRK12740 81 LRVLDGAVVVVCAVGG-VEP-QTETVWRQAEK------YGVPRIIFVNKMDRAGAD-FFRVLAQLQE 138 (668)
T ss_pred HHHhCeEEEEEeCCCC-cCH-HHHHHHHHHHH------cCCCEEEEEECCCCCCCC-HHHHHHHHHH
Confidence 9999999999999875 222 22222333222 578999999999987643 3334444444
No 275
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.53 E-value=3.3e-13 Score=127.24 Aligned_cols=137 Identities=22% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc---c--eeee-----------eccccceeEeecccCCCccccEEEEeC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ---G--TVTS-----------MEPNEDTFVLHSESTKGKIKPVHLVDV 123 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~---~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt 123 (267)
.+.++|+++|+.++|||||+.+|+... ... + ...+ +......+.+ ..++..+.++++||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~---~~~~~~~~i~liDt 94 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH---EYEGKEYLINLIDT 94 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE---EecCCcEEEEEEcC
Confidence 456789999999999999999997532 100 0 0000 1000111111 11334578999999
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQ 200 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~ 200 (267)
||+.+|.......++.+|++|+|+|+..+. .......+..... .+.|+++++||+|+... ...+++.+.
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~g~--~~~t~~~~~~~~~------~~~~~iv~iNK~D~~~~~~~~~~~~~~~~ 166 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVEGV--MPQTETVLRQALR------ERVKPVLFINKVDRLIKELKLTPQEMQQR 166 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCCCC--CccHHHHHHHHHH------cCCCeEEEEECchhhcccccCCHHHHHHH
Confidence 999999888999999999999999998752 1222233333232 45688999999998643 245566666
Q ss_pred HHHHHHHHH
Q 024474 201 MEKEIDKLR 209 (267)
Q Consensus 201 l~~~~~~~~ 209 (267)
+.+.+..+.
T Consensus 167 ~~~~~~e~~ 175 (731)
T PRK07560 167 LLKIIKDVN 175 (731)
T ss_pred HHHHHHHHH
Confidence 665555444
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=1.8e-13 Score=119.55 Aligned_cols=86 Identities=29% Similarity=0.362 Sum_probs=56.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecc----------------cCC-CccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSE----------------STK-GKIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~-~~~~~~~l~DtpG 125 (267)
++|+++|.||+|||||+|+|++.....+. -+++.|+.+....... ..+ .....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987653211 1233444333221110 011 1225789999999
Q ss_pred CCC----chhhHHh---hhccCCEEEEEEeCC
Q 024474 126 HSR----LRPKLDE---FLPQAAGIVFVVDAL 150 (267)
Q Consensus 126 ~~~----~~~~~~~---~~~~~d~ii~v~d~~ 150 (267)
... ...+... .++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 642 2333334 488999999999997
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.52 E-value=8.7e-13 Score=110.19 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD------ 134 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~------ 134 (267)
..+..+|+++|.+|+||||++|+|++..... ++...+.+.+........+ +..+++|||||..+......
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~--vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT--VSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 4577899999999999999999999876321 1111111111111111123 36899999999886532222
Q ss_pred -hhh--ccCCEEEEEEeCCC--CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 135 -EFL--PQAAGIVFVVDALE--FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 135 -~~~--~~~d~ii~v~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
.++ ...|+++||...+. .......+.+.+.+++.. ..-.+.|+|+|+.|..+.
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~----~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK----DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh----hhhccEEEEEECCccCCC
Confidence 122 25899999965543 211223344444444432 123468999999997643
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.52 E-value=2e-13 Score=111.56 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=130.9
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 8 KLPEGMEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 8 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++..+..+..-|..++|+++.+++..+....+ +..++..+.. ...+...|.|.|.||+|||||+..|...
T Consensus 3 ~~~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~--a~~ll~~l~p------~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 3 TVDELIERLLAGDRRALARAITLVESRRPDHRAL--ARELLRALYP------RTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHhcCCchhhhH--HHHHHHHHhh------cCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 3455567777778999999999999998875543 3344444332 1456679999999999999999988543
Q ss_pred Ccccce---eeeeccc----ccee-----------------Eeecc-----------------cCCCccccEEEEeCCCC
Q 024474 88 STHQGT---VTSMEPN----EDTF-----------------VLHSE-----------------STKGKIKPVHLVDVPGH 126 (267)
Q Consensus 88 ~~~~~~---~~~~~~~----~~~~-----------------~~~~~-----------------~~~~~~~~~~l~DtpG~ 126 (267)
-..++. +-.++|+ ++.+ ..+.. .++..++.+.|+.|.|.
T Consensus 75 l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGv 154 (323)
T COG1703 75 LRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGV 154 (323)
T ss_pred HHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 222211 2222221 1110 00000 01334567889999886
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
..-.. ....-+|.+++|.-+..+ +..+..+.-+.++-. ++|+||.|+..+ +.....+...++
T Consensus 155 GQsev---~I~~~aDt~~~v~~pg~G-D~~Q~iK~GimEiaD-----------i~vINKaD~~~A---~~a~r~l~~al~ 216 (323)
T COG1703 155 GQSEV---DIANMADTFLVVMIPGAG-DDLQGIKAGIMEIAD-----------IIVINKADRKGA---EKAARELRSALD 216 (323)
T ss_pred Ccchh---HHhhhcceEEEEecCCCC-cHHHHHHhhhhhhhh-----------eeeEeccChhhH---HHHHHHHHHHHH
Confidence 64322 233458999999887776 678888888877654 899999995433 233333333333
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..... +.+..-.-+++.+||.+|+ +++|.+.+.+|.
T Consensus 217 ~~~~~-----------------------~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 217 LLREV-----------------------WRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred hhccc-----------------------ccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 22100 1111223368999999999 999999998874
No 279
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.52 E-value=2.2e-13 Score=129.90 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=96.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc---ce-e-e-----------eeccccceeEeecc---------cCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---GT-V-T-----------SMEPNEDTFVLHSE---------STKG 113 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~---~~-~-~-----------~~~~~~~~~~~~~~---------~~~~ 113 (267)
..+.++|+|+|+.++|||||+++|+...- .. +. . . ++......+.+... ...+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34667999999999999999999975321 00 00 0 0 11111111111100 0122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA-- 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~-- 191 (267)
..+.++++||||+.+|.......++.+|++|+|+|+..+-. ......+..... .++|+++++||+|+...
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~--~~t~~~~~~~~~------~~~p~i~~iNK~D~~~~~~ 167 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG------ERIRPVLTVNKMDRCFLEL 167 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc--ccHHHHHHHHHH------CCCCEEEEEECCcccchhh
Confidence 35688999999999999999999999999999999988621 222333333332 67899999999998632
Q ss_pred -CCHHHHHHHHHHHHHHHHhhhhc
Q 024474 192 -HTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 192 -~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+.++....+.+.+++++...+.
T Consensus 168 ~~~~~~~~~~~~~vi~~in~~~~~ 191 (843)
T PLN00116 168 QVDGEEAYQTFSRVIENANVIMAT 191 (843)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 24566777788888887754444
No 280
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-13 Score=123.40 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC---------CC----ccccEEEEeCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST---------KG----KIKPVHLVDVPGHS 127 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~l~DtpG~~ 127 (267)
.-+.+-++|+|+..+|||-|+..+.+.++..+....+..+.+...++...+ +. +.--+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 346678999999999999999999987765554444333333222222211 11 11237899999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC------CCH-HHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------HTK-EFIRKQ 200 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~------~~~-~~~~~~ 200 (267)
.|..+..+....||.+|+|+|+..+ ++...-.-..+++ ..++|+||.+||+|..-. .+. +.+.++
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhG---lepqtiESi~lLR-----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHG---LEPQTIESINLLR-----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhcc---CCcchhHHHHHHH-----hcCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 9999999999999999999999876 3322222223333 278999999999996422 111 111111
Q ss_pred HHHHHHHH----HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 201 MEKEIDKL----RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 201 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
-....+.+ ......+...+.+..++.. -.+....+.++|+||.+|+ |.+|+-||.+.
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~Lyyk-------Nk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYK-------NKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheee-------cccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 11111211 1122222233333333222 1233456788999999999 99999998765
No 281
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.3e-13 Score=111.16 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=104.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC----cccceeeeeccccceeEe-------ecccCCCccccEEEEeCCCCCCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVL-------HSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
+...++.++|+..+|||||..+|..-. |+....++....+-+..+ ......+....+.++|+||+....
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345799999999999999999986422 111111111111111111 111224556788999999987655
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
........-.|..++|+|+..+.+.-....-.+.+++ ....+||+||+|...+.......+.+.+.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--------c~klvvvinkid~lpE~qr~ski~k~~kk~~K--- 153 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--------CKKLVVVINKIDVLPENQRASKIEKSAKKVRK--- 153 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--------ccceEEEEeccccccchhhhhHHHHHHHHHHH---
Confidence 4444455567999999999876332222222333332 34578999999987765443333333322221
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC----c-chhHHHHHHhhc
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG----E-ISQVEQFIREQV 265 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----~-i~~l~~~l~~~~ 265 (267)
...+ ...+++.+++++||..| + |.+|.+.|.+.+
T Consensus 154 tLe~---------------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 154 TLES---------------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHh---------------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 1111 11266789999999999 6 999999998763
No 282
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-15 Score=114.95 Aligned_cols=164 Identities=18% Similarity=0.240 Sum_probs=118.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCC-ccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG-KIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
+++.|+|.-|+|||+++.+.....+...+..++ +.++.......+. ..+++++||.+|+++|..+..-|++.+++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI---gvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI---GVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHH---hHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 489999999999999999998877654444444 3344444444433 346899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCC-CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVV-KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
.+|||.+.. ..++....|..++.....+. ....|+++..||||+......+ ....+.+
T Consensus 103 ~iVfdvt~s-~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~------------------- 161 (229)
T KOG4423|consen 103 FIVFDVTRS-LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDN------------------- 161 (229)
T ss_pred EEEEEcccc-ccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHH-------------------
Confidence 999999986 67889999998887654432 3567789999999986432211 1111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|....+-...+++|+|.+. +++..+.|.++
T Consensus 162 ------------f~kengf~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 162 ------------FKKENGFEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred ------------HHhccCccceeeeccccccChhHHHHHHHHH
Confidence 1111333457899999988 88888777765
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.4e-13 Score=129.37 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cc---cc--eeeeecc----ccceeEee----cccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--TH---QG--TVTSMEP----NEDTFVLH----SESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~---~~--~~~~~~~----~~~~~~~~----~~~~~~~~~~~~l~DtpG~ 126 (267)
...++|+++|+.++|||||+++|+... .. .+ ...+..+ .+.+.... ....++..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 00 00 0000100 00011100 0113455678999999999
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC---CCHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA---HTKEFIRKQMEK 203 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~---~~~~~~~~~l~~ 203 (267)
.+|.......++.+|++|+|+|+.++.. ......+..... .+.|+++|+||+|.... ...+++++.+..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~--~~t~~~~~~~~~------~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~ 168 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVM--PQTETVLRQALK------ENVKPVLFINKVDRLINELKLTPQELQERFIK 168 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCC--ccHHHHHHHHHH------cCCCEEEEEEChhcccchhcCCHHHHHHHHhh
Confidence 9998888999999999999999987521 111222222222 56788999999998754 245566666665
Q ss_pred HHHHHH
Q 024474 204 EIDKLR 209 (267)
Q Consensus 204 ~~~~~~ 209 (267)
.+..+.
T Consensus 169 ~~~~v~ 174 (720)
T TIGR00490 169 IITEVN 174 (720)
T ss_pred hhHHHH
Confidence 554443
No 284
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.49 E-value=1.6e-12 Score=105.86 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
..+..|+++|++|+|||||++.+.+... ....... .+++... .....++.++||||.. .......+.+|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-~~~~~~~---~g~i~i~----~~~~~~i~~vDtPg~~---~~~l~~ak~aD 105 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-KQNISDI---KGPITVV----TGKKRRLTFIECPNDI---NAMIDIAKVAD 105 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-cCccccc---cccEEEE----ecCCceEEEEeCCchH---HHHHHHHHhcC
Confidence 5667899999999999999999987521 1111111 1212111 1233578999999853 23334567899
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCNKTDKVTA 191 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-ivv~nK~Dl~~~ 191 (267)
++++|+|++.+ .......+...+.. .+.|. ++|+||+|+...
T Consensus 106 vVllviDa~~~---~~~~~~~i~~~l~~-----~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 106 LVLLLIDASFG---FEMETFEFLNILQV-----HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEEEEecCcC---CCHHHHHHHHHHHH-----cCCCeEEEEEeccccCCc
Confidence 99999999875 22222333333332 45674 559999998743
No 285
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=3.9e-13 Score=128.04 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cc---cee--e-----------eeccccceeEeecc---cCCCccccEEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQ---GTV--T-----------SMEPNEDTFVLHSE---STKGKIKPVHL 120 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~---~~~--~-----------~~~~~~~~~~~~~~---~~~~~~~~~~l 120 (267)
.+.++|+++|+.++|||||+++|+...- .. +.. . ++......+.+... ..++..+.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4566999999999999999999976321 00 000 0 00000011111100 00122467999
Q ss_pred EeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHH
Q 024474 121 VDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFI 197 (267)
Q Consensus 121 ~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~ 197 (267)
+||||+.+|.......++.+|++|+|+|+.++.. ......+..+.. .++|+++++||+|+.- ..++++.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~--~~t~~~~~~~~~------~~~p~iv~iNK~D~~~~~~~~~~~~~ 168 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC--VQTETVLRQALQ------ERIRPVLFINKVDRAILELQLDPEEI 168 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC--ccHHHHHHHHHH------cCCCEEEEEEChhhhhhhcCCCHHHH
Confidence 9999999998888899999999999999988522 222233333332 5689999999999863 3467777
Q ss_pred HHHHHHHHHHHHhhhhc
Q 024474 198 RKQMEKEIDKLRASRSA 214 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~ 214 (267)
...+.+.+++++.....
T Consensus 169 ~~~~~~ii~~in~~l~~ 185 (836)
T PTZ00416 169 YQNFVKTIENVNVIIAT 185 (836)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888887765543
No 286
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.3e-13 Score=96.62 Aligned_cols=138 Identities=19% Similarity=0.226 Sum_probs=92.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhhhccC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEFLPQA 140 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~~~~~ 140 (267)
.|++++|..|+|||||.++|.+.......+.. . .++.. -.+||||-- .+..-.......+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQA-------v-----e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA-------V-----EFNDK----GDIDTPGEYFEHPRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccce-------e-----eccCc----cccCCchhhhhhhHHHHHHHHHhhcc
Confidence 48999999999999999999987532211111 1 11111 258999933 2222233445789
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|-.++++.+.+..... .....|+|-|++|+||....+.+..++.+.+
T Consensus 66 dvi~~v~~and~~s~f~p~f~-----------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e----------------- 117 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFL-----------DIGVKKVIGVVTKADLAEDADISLVKRWLRE----------------- 117 (148)
T ss_pred ceeeeeecccCccccCCcccc-----------cccccceEEEEecccccchHhHHHHHHHHHH-----------------
Confidence 999999998887443332211 1255679999999999865555555544443
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+.-++|++|+.+.. +++|+++|...
T Consensus 118 ------------------aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 118 ------------------AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ------------------cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 234468999999999 99999998753
No 287
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.47 E-value=7e-14 Score=112.82 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=105.4
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceeeeeccc
Q 024474 24 LNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVTSMEPN 100 (267)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~~~~~~ 100 (267)
++++++.+++..+. +..++..+.. ...+.+.|.|.|+||+|||||++.|...-.. .-.+-.++|+
T Consensus 1 LAraITlvE~~~~~------~~~ll~~l~~------~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 1 LARAITLVENRRPE------ARELLKRLYP------HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp HHHHHHHHH-SSHH------HHHHHHHHGG------GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CHHHHHHHhCCCHH------HHHHHHHHHh------hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 46888999988773 2333333321 1346789999999999999999988532111 1122223332
Q ss_pred c----ce-----------------eEeeccc-----------------CCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 101 E----DT-----------------FVLHSES-----------------TKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 101 ~----~~-----------------~~~~~~~-----------------~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
. +. |...... .+..++.+.|+.|.|...-.- ....-+|.
T Consensus 69 Sp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~ 145 (266)
T PF03308_consen 69 SPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADT 145 (266)
T ss_dssp GGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSE
T ss_pred CCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCe
Confidence 1 10 1100000 122346788899988654222 23456899
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|.-+..+ +.++.++.-+.++.. ++|+||.|+..+ +.....++..+.... .
T Consensus 146 ~v~v~~Pg~G-D~iQ~~KaGimEiaD-----------i~vVNKaD~~gA---~~~~~~l~~~l~l~~---~--------- 198 (266)
T PF03308_consen 146 VVLVLVPGLG-DEIQAIKAGIMEIAD-----------IFVVNKADRPGA---DRTVRDLRSMLHLLR---E--------- 198 (266)
T ss_dssp EEEEEESSTC-CCCCTB-TTHHHH-S-----------EEEEE--SHHHH---HHHHHHHHHHHHHCS---T---------
T ss_pred EEEEecCCCc-cHHHHHhhhhhhhcc-----------EEEEeCCChHHH---HHHHHHHHHHHhhcc---c---------
Confidence 9999999877 678888887777744 899999995432 222333333332110 0
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
... .-..+++.+||.+|+ +++|.+.|.+|
T Consensus 199 ------~~~-------~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 199 ------RED-------GWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp ------SCT-------SB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ------ccc-------CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 000 113479999999999 99999999886
No 288
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.9e-12 Score=110.54 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH--cCCcccceee-e-------------ec-cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR--DGSTHQGTVT-S-------------ME-PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~--~~~~~~~~~~-~-------------~~-~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+++..+|+-+|.+|||||..+|+ ++.+..+... . +. ..+-.........+..++.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45589999999999999999874 3322111110 0 00 012223333334456668899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|++|..-..+-+.-+|.+++|+|+..+ ++.....|.++.+. .++||+-++||.|... +.+-++..++++.+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG---iE~qT~KLfeVcrl-----R~iPI~TFiNKlDR~~-rdP~ELLdEiE~~L 161 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG---IEPQTLKLFEVCRL-----RDIPIFTFINKLDREG-RDPLELLDEIEEEL 161 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC---ccHHHHHHHHHHhh-----cCCceEEEeecccccc-CChHHHHHHHHHHh
Confidence 999999888888899999999999987 66666667777664 8999999999999864 44555555555544
Q ss_pred H
Q 024474 206 D 206 (267)
Q Consensus 206 ~ 206 (267)
.
T Consensus 162 ~ 162 (528)
T COG4108 162 G 162 (528)
T ss_pred C
Confidence 3
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.42 E-value=1.2e-11 Score=101.79 Aligned_cols=124 Identities=11% Similarity=0.084 Sum_probs=75.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---h-----
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---K----- 132 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~----- 132 (267)
.....+|+++|.+|+|||||+|+|++.... .+....+.+..........+ +..+++|||||..+... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~~~~~~T~~~~~~~~~~~--g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKA--ATSAFQSETLRVREVSGTVD--GFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCceEEEEEEEEEEC--CeEEEEEECCCcCcchhhHHHHHHHH
Confidence 457789999999999999999999997632 12222222222222222223 35799999999886521 1
Q ss_pred --HHhhhc--cCCEEEEEEeCCCCC--CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 133 --LDEFLP--QAAGIVFVVDALEFL--PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 133 --~~~~~~--~~d~ii~v~d~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
...++. ..|+++||..++... .....+.+.+.+.+.. ..-.++++|.||+|...+.
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~----~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP----SIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh----hhHhCEEEEEeCCccCCCC
Confidence 223443 578899987665421 1122344444444331 1225699999999987554
No 290
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=9.2e-12 Score=107.89 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~ 128 (267)
.....+|+++|.||+|||||+|+|++.....+ .-+|..|+.+...+.... .+. ....+.++||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35778999999999999999999987653211 112223333332222110 000 123689999999753
Q ss_pred ch----h---hHHhhhccCCEEEEEEeCC
Q 024474 129 LR----P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 129 ~~----~---~~~~~~~~~d~ii~v~d~~ 150 (267)
-. . ..-..++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 1 2334678899999999985
No 291
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.38 E-value=1.5e-12 Score=106.49 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred cEEEEeCCCCCCchhhHHh------hhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDE------FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~------~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.++|||||.++...+.. .+. ..-++++++|+....+........+...... .+.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~---~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM---LRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH---HHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH---hhCCCCEEEeeeccCc
Confidence 6899999999876544332 222 3458999999876423233333333332221 1267999999999999
Q ss_pred CCCCCHHHHHHHHH---HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 189 VTAHTKEFIRKQME---KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 189 ~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.... .+...+.+. .....+......... .+... +++......++++|+++++ +++|...+.+.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~-~i~~~-----------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNE-EIAEL-----------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHH-HHHHH-----------CCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHH-----------HhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8744 332222221 110110000000000 00000 1111223379999999999 99999998875
Q ss_pred c
Q 024474 265 V 265 (267)
Q Consensus 265 ~ 265 (267)
+
T Consensus 236 ~ 236 (238)
T PF03029_consen 236 N 236 (238)
T ss_dssp H
T ss_pred h
Confidence 4
No 292
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.2e-11 Score=110.31 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee-------------------eeccccceeEeecccCCCccccEEEEe
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT-------------------SMEPNEDTFVLHSESTKGKIKPVHLVD 122 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D 122 (267)
...++++++|+-++|||+|+..|..+..++.... ++..+..+... ....++.+.++++|
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l--~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVL--SDSKGKSYLMNILD 203 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEE--ecCcCceeeeeeec
Confidence 4567899999999999999999976543222110 11111111111 11256778899999
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHH
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRK 199 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~ 199 (267)
|||+-+|.+.....++.+|++++|+|+.++ -.-.....+....+ .+.|+++|+||+|+.- ..++.....
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EG--VmlntEr~ikhaiq------~~~~i~vviNKiDRLilELkLPP~DAY~ 275 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEG--VMLNTERIIKHAIQ------NRLPIVVVINKVDRLILELKLPPMDAYY 275 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccC--ceeeHHHHHHHHHh------ccCcEEEEEehhHHHHHHhcCChHHHHH
Confidence 999999999999999999999999999986 22233444444443 6789999999999642 234555566
Q ss_pred HHHHHHHHHHhhhhcccc
Q 024474 200 QMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~ 217 (267)
.+.-.+..++...+..+.
T Consensus 276 KLrHii~~iN~~is~~s~ 293 (971)
T KOG0468|consen 276 KLRHIIDEINNLISTFSK 293 (971)
T ss_pred HHHHHHHHhcchhhhccc
Confidence 666666666655555544
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=1.7e-11 Score=105.17 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCchhhHHhhh--
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL-- 137 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-- 137 (267)
...+|+|+|.+|+|||||+|.|.+- .-..+..+....++.. ..+.. .+.-.+.+||.||..........|+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~----p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH----PKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-----SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC----CCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 5569999999999999999999752 2111122111111111 11221 2223699999999765444444554
Q ss_pred ---ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 138 ---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 138 ---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
..-|.+|++.+ +. +....-++...++. .++|+.+|-||+|.
T Consensus 110 ~~~~~yD~fiii~s-~r----f~~ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VKFYRYDFFIIISS-ER----FTENDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp TTGGG-SEEEEEES-SS------HHHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred ccccccCEEEEEeC-CC----CchhhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 45687777644 33 44444444444442 78999999999995
No 294
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=1.9e-11 Score=98.67 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HHh---
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LDE--- 135 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~~--- 135 (267)
+|+++|..|+||||++|.+++......... ..+.+..........++ ..+.++||||..+.... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~-~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSS-AKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TT-TSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccc-cCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 799999999999999999998775332211 11112222222223344 67999999997643221 111
Q ss_pred -hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 136 -FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 136 -~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
...+.|++|+|++............+++..++... .-..++||+|..|.......+
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~----~~k~~ivvfT~~d~~~~~~~~ 135 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE----IWKHTIVVFTHADELEDDSLE 135 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG----GGGGEEEEEEEGGGGTTTTHH
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH----HHhHhhHHhhhccccccccHH
Confidence 23568999999999865344556667777776532 224589999999877666543
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.2e-11 Score=103.08 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccee------e--------------------eeccccceeEeecccCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV------T--------------------SMEPNEDTFVLHSESTKG 113 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~~------~--------------------~~~~~~~~~~~~~~~~~~ 113 (267)
+...+++-+|...-|||||+-+|+.+.- .+... + .-..++-+..+....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4556899999999999999999875421 00000 0 001122223333333344
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHH--HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAAS--EYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
...+|.+.|||||+.|....-.-...||+.|+++|+..+ -+++.. .++..++ .=..+++.+||+||.+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL-------GIrhvvvAVNKmDLvdy 154 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL-------GIRHVVVAVNKMDLVDY 154 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh-------CCcEEEEEEeeeccccc
Confidence 456899999999999877777777889999999999875 233222 2333333 23458999999999876
Q ss_pred C
Q 024474 192 H 192 (267)
Q Consensus 192 ~ 192 (267)
.
T Consensus 155 ~ 155 (431)
T COG2895 155 S 155 (431)
T ss_pred C
Confidence 4
No 296
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.32 E-value=4.8e-11 Score=101.93 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=61.5
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+.+||++|+...+..|.+++.++++++||+|+++.. +.+.+....+..++.+... .++|+++++||
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~--~~~pill~~NK 237 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF--ANTSIILFLNK 237 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc--cCCCEEEEccC
Confidence 467889999999999999999999999999999998741 3466777788888776543 68999999999
Q ss_pred CCCC
Q 024474 186 TDKV 189 (267)
Q Consensus 186 ~Dl~ 189 (267)
.|+.
T Consensus 238 ~D~f 241 (317)
T cd00066 238 KDLF 241 (317)
T ss_pred hHHH
Confidence 9965
No 297
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.3e-11 Score=114.08 Aligned_cols=122 Identities=23% Similarity=0.245 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-ceee------eecc----ccceeEeecccCCCc-cccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-GTVT------SMEP----NEDTFVLHSESTKGK-IKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-~~~~------~~~~----~~~~~~~~~~~~~~~-~~~~~l~DtpG~~ 127 (267)
.+.++|.|+|+.++|||||..+|+... ... +.+. ...+ .+-+..........+ .+.++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 466799999999999999999986321 111 0110 0000 111222222222333 4799999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
+|.....+.++-+|++++|+|+..+ .+.. ...+++.. +.++|.++++||+|.....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveG---V~~QTEtv~rqa~------~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEG---VEPQTETVWRQAD------KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCC---eeecHHHHHHHHh------hcCCCeEEEEECccccccC
Confidence 9999999999999999999999986 3333 33333333 3789999999999987654
No 298
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.30 E-value=9.4e-11 Score=93.47 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=61.6
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE--EEEEecCCCCCC--
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV--LICCNKTDKVTA-- 191 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv--ivv~nK~Dl~~~-- 191 (267)
....+++|.|..-.... ...+ +|.+|.|+|+.+. .... .... .++.. ++++||+|+.+.
T Consensus 92 ~D~iiIEt~G~~l~~~~-~~~l--~~~~i~vvD~~~~-~~~~--~~~~-----------~qi~~ad~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-SPEL--ADLTIFVIDVAAG-DKIP--RKGG-----------PGITRSDLLVINKIDLAPMVG 154 (199)
T ss_pred CCEEEEECCCCCccccc-chhh--hCcEEEEEEcchh-hhhh--hhhH-----------hHhhhccEEEEEhhhcccccc
Confidence 46678888884321111 1222 6889999999876 2211 1111 12223 899999999853
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.. .+.+..+ ....+++++||++|+ +++|++||.+++.
T Consensus 155 ~~~~~~----~~~~~~~------------------------------~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGVM----ERDAKKM------------------------------RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHHH----HHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223222 2223222 224578999999999 9999999998864
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.3e-11 Score=106.34 Aligned_cols=160 Identities=24% Similarity=0.264 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Cccc------------------ce--ee----eeccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ------------------GT--VT----SMEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~------------------~~--~~----~~~~~~~~~~~~~~~~~~~~ 115 (267)
.....++++|+.++|||||+-+|+.. .+.. .+ +. .-...+.+..+....++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 35678999999999999999887431 1100 00 00 00111222333333345556
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHH------HHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSA------ASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++|+|+||+.+|.+........+|+.++|+|++.. .|+. .......+++.- .-..++|++||+|+.
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~--~FE~gfd~~gQtrEha~llr~L----gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG--EFESGFDPGGQTREHALLLRSL----GISQLIVAINKMDLV 328 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcc--hhhhccCCCCchHHHHHHHHHc----CcceEEEEeeccccc
Confidence 7899999999999999888888899999999999863 2221 222233333321 234689999999998
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 190 TAH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 190 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
.=. -.+++...+...+.+. . . |. ..++.|+|||+.+|+
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~----~------------------g--f~--es~v~FIPiSGl~Ge 368 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKES----C------------------G--FK--ESSVKFIPISGLSGE 368 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHh----c------------------C--cc--cCCcceEecccccCC
Confidence 643 2344555555444221 0 0 11 346789999999998
No 300
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.27 E-value=1.5e-10 Score=99.70 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=61.2
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
..+.+||.+|+...+..|.+++.+++++|||+|+++.. +.+.+....+..++....+ .++|+++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~--~~~piil~~NK~ 261 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF--ANTSIILFLNKI 261 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc--cCCcEEEEEecH
Confidence 56789999999999999999999999999999999731 3577777888888876543 789999999999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|+.
T Consensus 262 D~~ 264 (342)
T smart00275 262 DLF 264 (342)
T ss_pred HhH
Confidence 975
No 301
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.7e-11 Score=101.55 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
.|+..|+...|||||+..+.+..... .+...-.+.+..............+.++|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 47889999999999999998865321 1111112222333333333333489999999999988877778888999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFT 225 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
|+|++++ +.....+...++..- .-...++|+||+|+.+.... .+.+++.+....
T Consensus 80 vV~~deG---l~~qtgEhL~iLdll----gi~~giivltk~D~~d~~r~---e~~i~~Il~~l~---------------- 133 (447)
T COG3276 80 VVAADEG---LMAQTGEHLLILDLL----GIKNGIIVLTKADRVDEARI---EQKIKQILADLS---------------- 133 (447)
T ss_pred EEeCccC---cchhhHHHHHHHHhc----CCCceEEEEeccccccHHHH---HHHHHHHHhhcc----------------
Confidence 9999875 222222222333321 22345999999999865422 222333222211
Q ss_pred CCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 226 LGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
-.+..++.+|+++|+ |++|.+.|.+..
T Consensus 134 -------------l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -------------LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -------------cccccccccccccCCCHHHHHHHHHHhh
Confidence 123456999999999 999999988754
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=5.4e-11 Score=99.55 Aligned_cols=142 Identities=14% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceee---e--eccccceeEeecc--cCCCccccEEEEeCCCCCCchhh---H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT---S--MEPNEDTFVLHSE--STKGKIKPVHLVDVPGHSRLRPK---L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~---~--~~~~~~~~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~---~ 133 (267)
.++|+|+|.+|+|||||+|.|++......... . ....+........ .-++..+.++++||||+.+.... +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 36899999999999999999998664322100 0 0000111111111 11455678999999997643211 1
Q ss_pred -----------Hhhh-------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 134 -----------DEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 134 -----------~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++ .+.|++||+++++.. .+....-....-+. ..+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~--~L~~~Di~~mk~Ls------~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH--GLKPLDIEFMKRLS------KRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS--SS-HHHHHHHHHHT------TTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc--cchHHHHHHHHHhc------ccccEEeEEeccccc
Confidence 1111 246899999999863 34444433333333 567899999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
........++.+.+.+........
T Consensus 156 t~~el~~~k~~i~~~l~~~~I~~f 179 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLEENNIKIF 179 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--S-
T ss_pred CHHHHHHHHHHHHHHHHHcCceee
Confidence 766666667777766665444333
No 303
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=5e-11 Score=98.21 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------cceeeeeccccc------------eeEeec-cc-C---CCcccc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-------QGTVTSMEPNED------------TFVLHS-ES-T---KGKIKP 117 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-------~~~~~~~~~~~~------------~~~~~~-~~-~---~~~~~~ 117 (267)
....+|.++|+...|||||..+|.+-... ++..-....... .+.... .. . ..-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46779999999999999999999763211 110000000000 000000 00 0 011146
Q ss_pred EEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 118 VHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 118 ~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+.|+|.|||+-.-...-.-..--|+.++|+.++.+. -..+..+.+..+-- . .-..+++|-||+||...+...+-
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-PQPQT~EHl~AleI-i----gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-PQPQTREHLMALEI-I----GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-CCCchHHHHHHHhh-h----ccceEEEEecccceecHHHHHHH
Confidence 899999998854443333333458999999998752 22233333332211 0 33468999999999865444333
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.+++.+.+. . ....+.+++++||..+- |+.|.++|.++++.
T Consensus 162 y~qIk~Fvk---G--------------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 162 YEQIKEFVK---G--------------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHHHhc---c--------------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 333333222 1 11456689999999999 99999999998863
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.22 E-value=2.4e-10 Score=91.94 Aligned_cols=158 Identities=19% Similarity=0.169 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee--------eecc-----ccce-eEeecc---------------cCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT--------SMEP-----NEDT-FVLHSE---------------STK 112 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~--------~~~~-----~~~~-~~~~~~---------------~~~ 112 (267)
...+.|+++|++|+|||||+++++........+. ..+. .+.. ...... ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 4567899999999999999999875411000000 0000 0000 000000 001
Q ss_pred CccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
.....+.+++|.|.-.... .+....+..+.|+|..+... ...... .. ...|.++++||+|+....
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~---~~~~~~-~~--------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDD---KPLKYP-GM--------FKEADLIVINKADLAEAV 164 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccc---hhhhhH-hH--------HhhCCEEEEEHHHccccc
Confidence 1134677888888211111 11123456677888876421 111111 11 345679999999997532
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 193 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. . ...+.+.++++ ....+++++||++|+ ++++++|+.++.+
T Consensus 165 ~~-~-~~~~~~~l~~~------------------------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 165 GF-D-VEKMKADAKKI------------------------------NPEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred hh-h-HHHHHHHHHHh------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 21 1 11122222221 123468999999999 9999999998764
No 305
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.22 E-value=3.7e-10 Score=95.09 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=92.1
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce-eeeeccc----cceeEeecccC--CCccccEEEEeCCCCCCchh-
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT-VTSMEPN----EDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP- 131 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~-~~~~~~~----~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~- 131 (267)
+..-.++|+++|+.|.||||++|.|++....... .....+. +.........+ ++....++++||||+.++-.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 3466789999999999999999999987432221 0011111 11122222222 45557899999999875421
Q ss_pred --hHH-----------hhh--------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 132 --KLD-----------EFL--------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 132 --~~~-----------~~~--------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.|+ .|+ .+.|+++|.+.++.. .+..+.-.++.-+. ..+.+|-|+.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh--~l~~~DIe~Mk~ls------~~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH--GLKPLDIEAMKRLS------KRVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC--CCCHHHHHHHHHHh------cccCeeeeee
Confidence 222 222 246899999998863 45555444433333 4567899999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 185 KTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 185 K~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
|+|..........++.+.+.+.....
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 99998877777777777777765543
No 306
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.22 E-value=9.5e-11 Score=96.70 Aligned_cols=152 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------ 132 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------ 132 (267)
..+.+.|.++|..|+|||||+++|++....... ..+.+|+...-..+ ++ ..+-+.||-|+-.--+.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp----sg--~~vlltDTvGFisdLP~~LvaAF 248 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP----SG--NFVLLTDTVGFISDLPIQLVAAF 248 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC----CC--cEEEEeechhhhhhCcHHHHHHH
Confidence 356678999999999999999999965432211 22344433222211 23 46889999996532111
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc----EEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP----VLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p----vivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
.-..+..+|+++.|+|++.+ ..+....-....+....+ ...| ++=|-||+|........
T Consensus 249 ~ATLeeVaeadlllHvvDiShP--~ae~q~e~Vl~vL~~igv--~~~pkl~~mieVdnkiD~e~~~~e~----------- 313 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHP--NAEEQRETVLHVLNQIGV--PSEPKLQNMIEVDNKIDYEEDEVEE----------- 313 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCc--cHHHHHHHHHHHHHhcCC--CcHHHHhHHHhhccccccccccCcc-----------
Confidence 11234579999999999997 355555555555554332 2223 45677888876443221
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+. .+++||++|+ ++++++.+...+.
T Consensus 314 --------------------------------E~n~-~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 --------------------------------EKNL-DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred --------------------------------ccCC-ccccccccCccHHHHHHHHHHHhh
Confidence 1111 5778999999 9999999887653
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=1.5e-10 Score=89.83 Aligned_cols=64 Identities=31% Similarity=0.478 Sum_probs=44.8
Q ss_pred ccEEEEeCCCCCCc----hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRL----RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
..+.|+||||..+. ...+..++..+|++|+|.+++.. ........+.+.... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~--~~~~~~~~l~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD--LTESDMEFLKQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST--GGGHHHHHHHHHHTT-----TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc--cchHHHHHHHHHhcC-----CCCeEEEEEcCC
Confidence 35899999997542 34577889999999999999885 222344555555543 344489999985
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.5e-10 Score=94.30 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=102.9
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCc------ccce-----eeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGST------HQGT-----VTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+..+..+|..+|+.+.|||||..+++.--. ...+ .+.-...+.+.......+......+-.+|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 456778999999999999999988753110 0000 01111112222222222233445788999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCCCCH-HHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVTAHTK-EFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~Dl~~~~~~-~~~~~~l~~~~~ 206 (267)
|-.....-..+.|+.|+|+.++++. +....+.+.-..+ -+. .+++++||+|+.++... +.+.-++.+.+.
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 8777666667889999999999862 3344443322221 455 47888999999875332 333333444444
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeecc-------Cc--chhHHHHHHhhcCC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-------GE--ISQVEQFIREQVKP 267 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-------g~--i~~l~~~l~~~~~p 267 (267)
.+. |. ..+.+++..||.. ++ |.+|.+.+.+++++
T Consensus 160 ~y~-------------------------f~--gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 160 EYG-------------------------FP--GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HcC-------------------------CC--CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 321 10 2244566666652 12 78888888888764
No 309
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.16 E-value=1.3e-09 Score=90.66 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..+.......+.++|+||+|||||++++++.
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455678889999999999999999988764
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=5.7e-10 Score=90.97 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCCCc-------------hhhHHhhhcc-CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEE
Q 024474 116 KPVHLVDVPGHSRL-------------RPKLDEFLPQ-AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181 (267)
Q Consensus 116 ~~~~l~DtpG~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pviv 181 (267)
..+.++||||.... ..+...|++. .+++++|+|+...... .........+ . +.+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~-~d~l~ia~~l-d-----~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLAN-SDALKLAKEV-D-----PQGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCc-hhHHHHHHHH-H-----HcCCcEEE
Confidence 47899999998531 1234567774 5699999998753121 1112222222 2 26789999
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||+|....
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998754
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=1.9e-09 Score=92.71 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC----Ccccc---------eeeeecc---ccceeEe------ecccCCCccccEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG----STHQG---------TVTSMEP---NEDTFVL------HSESTKGKIKPVH 119 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~----~~~~~---------~~~~~~~---~~~~~~~------~~~~~~~~~~~~~ 119 (267)
.....|+++|+.++|||||+|+|.+. +.... -+++... ++++-.+ .....++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45678999999999999999999887 33210 1111111 1111111 1111244456899
Q ss_pred EEeCCCCCCchhh-----------------------------HHhhhc-cCCEEEEEE-eCC--C--CCCchHHHHHHHH
Q 024474 120 LVDVPGHSRLRPK-----------------------------LDEFLP-QAAGIVFVV-DAL--E--FLPNCSAASEYLY 164 (267)
Q Consensus 120 l~DtpG~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~--~--~~~~~~~~~~~l~ 164 (267)
++||+|...-..+ ....+. .+|..|+|. |.+ + +.+-.+.-..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999997532110 223455 789988888 774 1 1112333444555
Q ss_pred HHHhcCCCCCCCCcEEEEEecCCC
Q 024474 165 DILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 165 ~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
++.+ .++|+++|+||+|-
T Consensus 175 eLk~------~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE------LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh------cCCCEEEEEECcCC
Confidence 5443 78999999999994
No 312
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.7e-09 Score=91.80 Aligned_cols=146 Identities=14% Similarity=0.220 Sum_probs=92.9
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcCCccccee----eeeccccceeEeecccC--CCccccEEEEeCCCCCCchh-
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV----TSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP- 131 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~- 131 (267)
.++.-.++++++|+.|.|||||+|.|+...+..... ......+..+......+ ++-..+++++||||+.+...
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 344566899999999999999999998875432210 01111122222222223 45567889999999875321
Q ss_pred -------------hHHhhh-------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 132 -------------KLDEFL-------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 132 -------------~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
..+.|+ .+.|+++|.+.++.. .+..+.-.+..-+. ..+.+|-|+-|
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh--gL~p~Di~~Mk~l~------~~vNiIPVI~K 167 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH--GLKPLDIEFMKKLS------KKVNLIPVIAK 167 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC--CCcHhhHHHHHHHh------ccccccceeec
Confidence 122232 157899999998863 35555444444333 56778999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 186 TDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 186 ~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+|..........++.+.+.+.......
T Consensus 168 aD~lT~~El~~~K~~I~~~i~~~nI~v 194 (366)
T KOG2655|consen 168 ADTLTKDELNQFKKRIRQDIEEHNIKV 194 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcce
Confidence 999887777667777666666544333
No 313
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=8.4e-10 Score=87.53 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cc--ccceeEeecccC--CCccccEEEEeCCCCCCchh---
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EP--NEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRP--- 131 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~--~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~--- 131 (267)
..-.++|+++|.+|.|||||+|.|......+...... .+ .+.........+ ++-..+++++||||+.++..
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 4456899999999999999999997665433211111 11 122222222222 45456789999999875421
Q ss_pred hHH-----------hhhc--------------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 132 KLD-----------EFLP--------------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 132 ~~~-----------~~~~--------------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+|+ .|++ +.++++|.+.++.. ++..+.-.+..-+. .-..++-|+-|.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh--sLrplDieflkrLt------~vvNvvPVIaka 194 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH--SLRPLDIEFLKRLT------EVVNVVPVIAKA 194 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC--ccCcccHHHHHHHh------hhheeeeeEeec
Confidence 222 2332 36899999998863 45544333332222 234578899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
|-..-+...+.++.+++.+........+..
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHGIDVYPQD 224 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccccc
Confidence 987766677777777777766655555433
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.09 E-value=9.7e-10 Score=84.94 Aligned_cols=81 Identities=21% Similarity=0.134 Sum_probs=51.2
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+.-|+|+|.+.+++......-.+ .. -=++|+||.||.+.... -.+.+.+...++
T Consensus 119 ~~~v~VidvteGe~~P~K~gP~i-----------~~-aDllVInK~DLa~~v~~--dlevm~~da~~~------------ 172 (202)
T COG0378 119 HLRVVVIDVTEGEDIPRKGGPGI-----------FK-ADLLVINKTDLAPYVGA--DLEVMARDAKEV------------ 172 (202)
T ss_pred ceEEEEEECCCCCCCcccCCCce-----------eE-eeEEEEehHHhHHHhCc--cHHHHHHHHHHh------------
Confidence 47899999988733221100000 01 23799999999865432 112222222222
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+|+++|++||+ +++|.+|+....
T Consensus 173 ------------------np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 173 ------------------NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ------------------CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 456789999999999 999999998764
No 315
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.4e-09 Score=97.14 Aligned_cols=182 Identities=19% Similarity=0.238 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--c---cceee----eeccccceeEeecccC--CCccccEEEEeCCCCCCch
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--H---QGTVT----SMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~---~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~ 130 (267)
...++++++.+...|||||...|...+- . .+.+. .-+.+++..+.+...+ --+.+.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3456899999999999999999875431 0 00000 0111222222222222 2355789999999999999
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---CCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---AHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~~~~~~~~~~l~~~~~~ 207 (267)
+......+-+|+.++.+|+..+ -.......+++... .+..+++|+||+|... ...+.+....+.+.++.
T Consensus 87 sevssas~l~d~alvlvdvveg--v~~qt~~vlrq~~~------~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEG--VCSQTYAVLRQAWI------EGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccc--cchhHHHHHHHHHH------ccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 9999999999999999999886 23344455555433 5666799999999432 24667778888888888
Q ss_pred HHhhhhcccccccc-ccccCCCCCCCcccccccceeEEEEeeeccCc
Q 024474 208 LRASRSAVSEADVT-NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE 253 (267)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 253 (267)
.+...+++-..-.. +.-.......+..|..-.+|+ +.+||..|-
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNV--if~~A~~~~ 203 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNV--IFASALDGW 203 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcE--EEEEecccc
Confidence 87776654322110 000001113345566555554 458888875
No 316
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.06 E-value=6.7e-10 Score=91.47 Aligned_cols=97 Identities=16% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 127 SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
+++..+.+.+++++|++++|+|+.++..++..+..|+..+.. .++|+++|+||+||....... .+.. .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~------~~i~~vIV~NK~DL~~~~~~~--~~~~----~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA------QNIEPIIVLNKIDLLDDEDME--KEQL----D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEECcccCCCHHHH--HHHH----H
Confidence 456666777899999999999999874588888888865432 678999999999996432211 1111 1
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+ . ..+..++++||++|+ +++|++.|.+.
T Consensus 92 ~~---------------------------~--~~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 92 IY---------------------------R--NIGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred HH---------------------------H--HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence 11 0 123478999999999 99999988653
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.3e-09 Score=88.31 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccC-------C----CccccEEEEeCCCCCC--
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST-------K----GKIKPVHLVDVPGHSR-- 128 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~l~DtpG~~~-- 128 (267)
..++.|+|.||+|||||+|.++......+ .-.|+.|+.+...+..... . .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 46899999999999999999998764222 2346777765554432211 1 1124689999999653
Q ss_pred -----chhhHHhhhccCCEEEEEEeCCC
Q 024474 129 -----LRPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 129 -----~~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.....-..++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23335567889999999999874
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=6.5e-09 Score=94.30 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------h----H
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------K----L 133 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~----~ 133 (267)
..+|+++|.+|+||||++|.|++.... .+....+.++.........++ ..+.++||||..+... . .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf--~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKF--STDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccc--cccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 468999999999999999999987532 122222222222111112233 5799999999876421 1 1
Q ss_pred Hhhhc--cCCEEEEEEeCCCCCCchH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEFLP--QAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~~~--~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..++. .+|++|||..+.......+ .+...+.+++... .-..+|||+|+.|..++
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~----Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS----IWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH----hHcCEEEEEeCCccCCC
Confidence 22433 4899999988764312112 2344444444421 22458999999998763
No 319
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=1.9e-09 Score=92.55 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=54.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCCch--
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSRLR-- 130 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~~~-- 130 (267)
.+|+++|.||+|||||+|+|++.....+ .-+|+.|+.+...+.... .+. ....+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 5899999999999999999998763111 112233333333322210 000 11258999999975421
Q ss_pred --h---hHHhhhccCCEEEEEEeCC
Q 024474 131 --P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 131 --~---~~~~~~~~~d~ii~v~d~~ 150 (267)
. ..-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2234578899999999985
No 320
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-09 Score=85.47 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-----hHHhhhc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-----KLDEFLP 138 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~~~~~~ 138 (267)
..||+++|.+|+||||+-..+..+...... ...++ +-++......+-|. ..+++||++|++.+-. .....++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~-~rlg~-tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDT-RRLGA-TIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhh-hccCC-cceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence 458999999999999987766543321111 11111 11222222222222 5789999999985422 2345678
Q ss_pred cCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 139 QAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 139 ~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
..+++++|||+... +..+.....-+..++++ .+...+++..+|+|+......+.+-+.-...+..
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~----SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~ 147 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQN----SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRR 147 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhc----CCcceEEEEEeechhcccchHHHHHHHHHHHHHH
Confidence 89999999999763 12233344445555554 3677899999999998776665555444444443
No 321
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.99 E-value=1.3e-09 Score=90.69 Aligned_cols=84 Identities=25% Similarity=0.382 Sum_probs=52.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecccC-------CCc---cccEEEEeCCCCCCch----
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSEST-------KGK---IKPVHLVDVPGHSRLR---- 130 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~l~DtpG~~~~~---- 130 (267)
|+++|.||+|||||+|+|++.....+ .-+|+.|..+...+..... +.. ...++++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999764211 1122333333333221110 110 1259999999975421
Q ss_pred h---hHHhhhccCCEEEEEEeCC
Q 024474 131 P---KLDEFLPQAAGIVFVVDAL 150 (267)
Q Consensus 131 ~---~~~~~~~~~d~ii~v~d~~ 150 (267)
. ..-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2234567899999999975
No 322
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.98 E-value=5.6e-09 Score=88.24 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=109.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeee----------e-ccccceeEeec-----------cc---------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS----------M-EPNEDTFVLHS-----------ES--------- 110 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~----------~-~~~~~~~~~~~-----------~~--------- 110 (267)
+....+...|+.+.|||||+-.|..+...++.-.+ + ..-+.+..+.. ..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45678999999999999999888765543321100 0 00000000000 00
Q ss_pred -CCCccccEEEEeCCCCCCchhhHHh--hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 111 -TKGKIKPVHLVDVPGHSRLRPKLDE--FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 111 -~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+.....-+.++||.|++.+-....+ .-++.|-.++++-++++. ....++.+--.+. ...|+++|+||+|
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a------~~lPviVvvTK~D 266 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA------MELPVIVVVTKID 266 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh------hcCCEEEEEEecc
Confidence 1111235889999999977554333 235689999999998862 2233444433333 6899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccccc-ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD-VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
+.++.....+.+.+...+.........+...+ .-..... ...-..-+++|.+|+.||+ ++-|.+++.
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a--------~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKA--------MKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhh--------hhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 99887777777777777766432222221111 1000000 0111346799999999999 776665554
No 323
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=4.2e-09 Score=87.61 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=104.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCC-------ccc-cee---eeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGS-------THQ-GTV---TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~-------~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
+..+..+|.-+|+...|||||-.+++.-- +.. ..+ +.-...+-+.....+.+......+-=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 45677899999999999999988775311 000 000 0111112222222222223334566789999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDK 207 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~ 207 (267)
|......-..+-|+.|+|+.++++ .+.+..+.+.-..+- .=..+++++||.|+.++.. .+-+.=++++.+..
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG--~MPQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDG--PMPQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCC--CCcchHHHHHHHHHc-----CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 887777777788999999999996 355566655433331 2235889999999985433 33333344444443
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeec---cC------c--chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL---TG------E--ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~g------~--i~~l~~~l~~~~~ 266 (267)
+. |+ ..+.+++..||. .| . |.+|.+.+.++++
T Consensus 203 ~g-------------------------f~--Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 203 FG-------------------------FD--GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred cC-------------------------CC--CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 31 11 345667777765 33 2 7778888887764
No 324
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.8e-09 Score=94.67 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc-------------cceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN-------------EDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
+.++|.+.-+-.+||||+-++.+...--...+...... +.+.........+..++++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45589999999999999999875421100011101000 11111111122344679999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK 194 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~ 194 (267)
.-..++.++-.|+.++|+|+..+ .+.. ....++.. +.+.|.+.++||+|...+...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~G---VqsQt~tV~rQ~~------ry~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAG---VESQTETVWRQMK------RYNVPRICFINKMDRMGASPF 174 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccc---eehhhHHHHHHHH------hcCCCeEEEEehhhhcCCChH
Confidence 99999999999999999999876 2222 23333333 278999999999998776543
No 325
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.90 E-value=2.4e-08 Score=84.82 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=60.1
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
...+.+.|.+||..-+..|.+++.++++||||+++++.. +.+.+....+..+..+.. -.++++|+++||
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~--F~~tsiiLFLNK 271 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW--FANTSIILFLNK 271 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc--cccCcEEEEeec
Confidence 367999999999988889999999999999999987531 235566677777776653 478999999999
Q ss_pred CCCCC
Q 024474 186 TDKVT 190 (267)
Q Consensus 186 ~Dl~~ 190 (267)
.||..
T Consensus 272 ~DLFe 276 (354)
T KOG0082|consen 272 KDLFE 276 (354)
T ss_pred HHHHH
Confidence 99863
No 326
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.4e-08 Score=76.41 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee-----cccCCCccccEEEEeCCCCCCchh---hHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH-----SESTKGKIKPVHLVDVPGHSRLRP---KLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~ 136 (267)
++|+++|...+||||+-.-...+ +.|+.+-+... ...+.+.-+.+++||.||+.++-. -.+..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk---------MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~i 98 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK---------MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMI 98 (347)
T ss_pred ceEEEEeecccCcchhhheeeec---------cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHH
Confidence 67999999999999987655443 22222222211 112233446899999999876532 25567
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
++++.++|||+|+.+. ..+....+......+....+++.+=|++.|.|-..+..
T Consensus 99 F~~~gALifvIDaQdd---y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 99 FRGVGALIFVIDAQDD---YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred HhccCeEEEEEechHH---HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 8899999999999874 44444455555555444568889999999999765543
No 327
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.1e-08 Score=82.67 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee------------cccCC-----------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH------------SESTK----------------- 112 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~----------------- 112 (267)
...+-|+++|+-..||||+++.|+...++...+. ..|++..+..- ...++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riG-pEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIG-PEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccC-CCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 3456899999999999999999999887643222 22222222210 00000
Q ss_pred ---------CccccEEEEeCCCCCC-----------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCC
Q 024474 113 ---------GKIKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTV 172 (267)
Q Consensus 113 ---------~~~~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~ 172 (267)
.---.++++||||.-+ |....+-+..++|.|+++||+..- +--.+....+..+..
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKL-DIsdEf~~vi~aLkG---- 209 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKL-DISDEFKRVIDALKG---- 209 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhc-cccHHHHHHHHHhhC----
Confidence 0012489999999653 344456688899999999998764 222333343444333
Q ss_pred CCCCCcEEEEEecCCCCCCCC
Q 024474 173 VKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 173 ~~~~~pvivv~nK~Dl~~~~~ 193 (267)
..-.+-||+||.|..+..+
T Consensus 210 --~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 210 --HEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred --CcceeEEEeccccccCHHH
Confidence 3445789999999876543
No 328
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.86 E-value=1.8e-07 Score=77.62 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
+.+.+|+++|..++|||||+.+|-+.+-.. +..+-.+.+-.+.- .....++.+|=.-|......+....+..
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~K------kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~a 123 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVK------KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPA 123 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccC------CCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccc
Confidence 577899999999999999999998865211 11122222222221 2223577788877877655665554433
Q ss_pred C----CEEEEEEeCCCCCCchHHHHHHH
Q 024474 140 A----AGIVFVVDALEFLPNCSAASEYL 163 (267)
Q Consensus 140 ~----d~ii~v~d~~~~~~~~~~~~~~l 163 (267)
. ..+|++.|.+++..-++.+..|.
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa 151 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWA 151 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHH
Confidence 2 36888899998755555555554
No 329
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.1e-08 Score=86.09 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccce------------------eeeeccccceeEe--eccc----------CCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT------------------VTSMEPNEDTFVL--HSES----------TKG 113 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~----------~~~ 113 (267)
..+++++|...+|||||+--|+.+..+.+. .+++....-.+.. +.+. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 468999999999999999888765543221 1111110000000 0000 122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhcc--CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQ--AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
....++++|.+|+.+|.......+.+ .|..++|+++..+.. ....+.+.-+.. -++|++++++|+|+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~--~tTrEHLgl~~A------L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT--WTTREHLGLIAA------LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc--cccHHHHHHHHH------hCCCeEEEEEeeccccc
Confidence 33468999999999887664443332 578888888877521 122333333332 68999999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 192 HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
...+...+.+...+.+......+..-+.-++... .+++ ...++-+++|.+|+.+|+ ++-|..+| +++.|
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~---Aaq~---~~s~nivPif~vSsVsGegl~ll~~fL-n~Lsp 388 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVK---AAQE---LCSGNIVPIFAVSSVSGEGLRLLRTFL-NCLSP 388 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHH---HHHH---hccCCceeEEEEeecCccchhHHHHHH-hhcCC
Confidence 7777777777777776544433321111111100 0000 112566789999999999 77666555 34443
No 330
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.83 E-value=7.1e-09 Score=87.41 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=104.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc------------------ceeeeeccccceeE---------------eeccc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ------------------GTVTSMEPNEDTFV---------------LHSES 110 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~------------------~~~~~~~~~~~~~~---------------~~~~~ 110 (267)
..+++++|...+|||||+-.|+.++... +..+++....-.|. ..+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4689999999999999997665443321 11111111000010 01111
Q ss_pred C-CCccccEEEEeCCCCCCchhhHHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 111 T-KGKIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 111 ~-~~~~~~~~l~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+ .....-++++|.+|++.|-...---+ .-.|..++++-++.+ -+...++.+--.+. -..|+++|.+|+|
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa------L~VPVfvVVTKID 284 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA------LHVPVFVVVTKID 284 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh------hcCcEEEEEEeec
Confidence 1 12223589999999998755432222 236888888887764 23344454544443 6789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
+.++...++-.+.+.+.+.......-++--...++. .....+|.- ..-+++|.+|..+|+ ++-|+.||.
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDV---v~~A~NF~S---er~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDV---VHAAVNFPS---ERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccce---EEeeccCcc---ccccceEEeccccCCChHHHHHHHh
Confidence 998876666555555555432211111111111111 011112221 345678999999999 888877764
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.1e-08 Score=78.52 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=58.7
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 209 (267)
+.+.++.++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+.... ... .... +..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~---~~l~~~~~-----~~~~p~iiv~NK~Dl~~~~---~~~-~~~~-~~~-- 67 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS---RKLERYVL-----ELGKKLLIVLNKADLVPKE---VLE-KWKS-IKE-- 67 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC---HHHHHHHH-----hCCCcEEEEEEhHHhCCHH---HHH-HHHH-HHH--
Confidence 4567778888999999999987522111 12222222 1568999999999985321 111 1110 000
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++|++.|.+.+
T Consensus 68 -----------------------------~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 68 -----------------------------SEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred -----------------------------hCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 112357899999999 999999998764
No 332
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.78 E-value=2.9e-08 Score=72.63 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=61.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+|++++|..|+|||+|+.++....+..... + ++.. +......+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~--------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG--------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh--------------------------hhhccccccCCCCEEE
Confidence 489999999999999999997766532111 0 0000 2222334567789999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.|++.... .+++.. |...++... +.+.|.++++||.|+..
T Consensus 52 ~v~~~~~~-~s~~~~--~~~~i~~~~---k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 52 QCWRVDDR-DSADNK--NVPEVLVGN---KSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEEEccCH-HHHHHH--hHHHHHhcC---CCCCcEEEEeechhhHh
Confidence 99998875 455443 655554432 35688999999999843
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=3.7e-08 Score=78.10 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
++..+..+++++|++++|+|+++...+... .+ ... ..+.|+++|+||+|+..........+.+.+... .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~---~l---~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP---RL---RLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA-A 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch---hH---HHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-H
Confidence 578888999999999999999875222211 11 111 256899999999999754322111111110000 0
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... . .....++++||++|+ +++|+++|.+.+
T Consensus 93 --~~~-----------------------~-~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 --AGL-----------------------G-LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --hhc-----------------------C-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000 0 011247899999999 999999998865
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=5e-08 Score=74.89 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.||+|||||+|+|.+... ..+..++.++... .....+. .+.++||||.
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~--~~~~~~~g~T~~~--~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKV--CKVAPIPGETKVW--QYITLMK---RIYLIDCPGV 157 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCc--eeeCCCCCeeEeE--EEEEcCC---CEEEEECcCC
Confidence 3467899999999999999999998653 1222232222222 2222222 4789999994
No 335
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.9e-08 Score=86.60 Aligned_cols=143 Identities=18% Similarity=0.315 Sum_probs=96.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee------------eeccccceeEeec------------------cc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT------------SMEPNEDTFVLHS------------------ES 110 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~------------~~~~~~~~~~~~~------------------~~ 110 (267)
.++.+++.++.+...|||||...|....- .++ .-+.+.+..++.. ..
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAg---Iis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAG---IISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhc---eeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45677899999999999999998864321 111 0011111111111 01
Q ss_pred CCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC-
Q 024474 111 TKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV- 189 (267)
Q Consensus 111 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~- 189 (267)
.++..+.++++|.||+-+|.+..-..++-.|+.++|+|.-++ -.-+....+.+.+. ..+..++|.||+|..
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~G--vCVQTETVLrQA~~------ERIkPvlv~NK~DRAl 164 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG--VCVQTETVLRQAIA------ERIKPVLVMNKMDRAL 164 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCc--eEechHHHHHHHHH------hhccceEEeehhhHHH
Confidence 245567899999999999999999999999999999999875 23344455555554 344457899999953
Q ss_pred --CCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 190 --TAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 190 --~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
-..+.+++.+.+++..+.++...+.
T Consensus 165 LELq~~~EeLyqtf~R~VE~vNviisT 191 (842)
T KOG0469|consen 165 LELQLSQEELYQTFQRIVENVNVIIST 191 (842)
T ss_pred HhhcCCHHHHHHHHHHHHhcccEEEEe
Confidence 2446777888787777766554443
No 336
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.76 E-value=3.9e-08 Score=76.50 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++.. ......+ ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~--~~~~~pg~T~~--~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC--NVGATPGVTKS--MQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc--eecCCCCeEcc--eEEEEeC---CCEEEEECcCC
Confidence 44579999999999999999999986531 22222222222 2222222 26899999994
No 337
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.75 E-value=5.2e-07 Score=80.46 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.....|+|+|..++|||||+.+|.+.+-+. . ..+-.|.+-.+.- .....++.+|-..|...+..++.-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~---~---~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~ 96 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPK---K---GLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTP 96 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCC---C---CcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCc
Confidence 466799999999999999999997654211 1 1122233222211 1223468999888866666666544432
Q ss_pred C----CEEEEEEeCCCCCCchHHHHHHH
Q 024474 140 A----AGIVFVVDALEFLPNCSAASEYL 163 (267)
Q Consensus 140 ~----d~ii~v~d~~~~~~~~~~~~~~l 163 (267)
. -++|+|+|.+.+..-++.+..|+
T Consensus 97 ~~l~~t~vvIvlDlS~PW~~~esL~~W~ 124 (472)
T PF05783_consen 97 ENLPNTLVVIVLDLSKPWNIMESLEKWL 124 (472)
T ss_pred ccccceEEEEEecCCChHHHHHHHHHHH
Confidence 1 36888999998754444444443
No 338
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.4e-09 Score=89.14 Aligned_cols=121 Identities=26% Similarity=0.247 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccce-eeee----ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGT-VTSM----EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
+.++|.++.+..+||||...+++.- .+.++. ++.. ...+-+.....+..++++++++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3458999999999999999987531 111111 1110 01122333444556888899999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
+-..++.++-.|+++.|||++.+ -..+.+.-|- +. .+.++|-++++||+|...+
T Consensus 116 ~leverclrvldgavav~dasag-ve~qtltvwr-qa------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAG-VEAQTLTVWR-QA------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCC-cccceeeeeh-hc------cccCCchhhhhhhhhhhhh
Confidence 99999999999999999999886 2222233332 21 2478999999999998654
No 339
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=9.1e-08 Score=84.67 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.+-++++||||+|||||+..|...-. ..++....+..++ +.++..++++..+|. +...+ ......+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTv----vsgK~RRiTflEcp~--Dl~~m-iDvaKIaD 135 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITV----VSGKTRRITFLECPS--DLHQM-IDVAKIAD 135 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEE----eecceeEEEEEeChH--HHHHH-HhHHHhhh
Confidence 4566777999999999999999876431 1122211222222 246667899999993 33333 34556799
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCC
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAH 192 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~ 192 (267)
.+++++|.+-+ ++.....+..++.. .+.| ++-|+|+.|+....
T Consensus 136 LVlLlIdgnfG---fEMETmEFLnil~~-----HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 136 LVLLLIDGNFG---FEMETMEFLNILIS-----HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred eeEEEeccccC---ceehHHHHHHHHhh-----cCCCceEEEEeecccccCh
Confidence 99999999876 55444455566653 4444 78899999998643
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.70 E-value=5.9e-08 Score=74.53 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=54.9
Q ss_pred hhhccCCEEEEEEeCCCCCCc-hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 135 EFLPQAAGIVFVVDALEFLPN-CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+..+|++++|+|+.++..+ ...+...+ ... ..+.|+++|+||+|+.+. ++. ...+..+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l----~~~---~~~~p~ilVlNKiDl~~~---~~~----~~~~~~~~---- 65 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL----KKE---KPHKHLIFVLNKCDLVPT---WVT----ARWVKILS---- 65 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHH----Hhc---cCCCCEEEEEEchhcCCH---HHH----HHHHHHHh----
Confidence 456789999999999875222 22333333 221 246899999999999642 111 12222210
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+ ......+++||++|. +++|.++|.++
T Consensus 66 -----------------------~-~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 66 -----------------------K-EYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred -----------------------c-CCcEEEEEeeccccccHHHHHHHHHHH
Confidence 0 111235789999999 99999998765
No 341
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=3.9e-08 Score=84.11 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.....+++++|-||+|||||+|+|.+... ..+...+ +.+.......++. .+.++||||.--
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~--~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii~ 189 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV--AKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGIIP 189 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccc--eeeCCCC--ceecceEEEEcCC---CeEEecCCCcCC
Confidence 34567899999999999999999999864 1222222 3333334443333 489999999653
No 342
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.2e-07 Score=82.20 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=51.9
Q ss_pred cEEEEeCCCCCC---chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 117 PVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 117 ~~~l~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.++|.||.+- ..+....+...+|++|||+.+.+. .....+.++....+ .+..++|+-||.|....+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~------~KpniFIlnnkwDasase- 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE------EKPNIFILNNKWDASASE- 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc------cCCcEEEEechhhhhccc-
Confidence 478999999763 344566788899999999998763 23344555555443 344577788888986443
Q ss_pred HHHHHHHHHHHHH
Q 024474 194 KEFIRKQMEKEID 206 (267)
Q Consensus 194 ~~~~~~~l~~~~~ 206 (267)
.+..+.+.+.++
T Consensus 278 -~ec~e~V~~Qi~ 289 (749)
T KOG0448|consen 278 -PECKEDVLKQIH 289 (749)
T ss_pred -HHHHHHHHHHHH
Confidence 333444444444
No 343
>PRK12289 GTPase RsgA; Reviewed
Probab=98.70 E-value=6.6e-08 Score=83.42 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
.+..+.++|.+++|+|+.++.-....+..|+.... ..++|+++|+||+||.... +.. .+.+.+.
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~------~~~ip~ILVlNK~DLv~~~---~~~-~~~~~~~------ 146 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE------STGLEIVLCLNKADLVSPT---EQQ-QWQDRLQ------ 146 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH------HCCCCEEEEEEchhcCChH---HHH-HHHHHHH------
Confidence 34468899999999999875224445566665442 2678999999999996431 111 1111111
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..++.++++||++|+ +++|+++|.++
T Consensus 147 --------------------------~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 --------------------------QWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred --------------------------hcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 112357899999999 99999988754
No 344
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.68 E-value=1.1e-07 Score=84.35 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=82.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.+.+.++|+.++|||.+++.+.++.+.++...+..+ .+.++.+...+....+.+-|.+-. ......+.- ..|
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~---~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKP---RYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCC---ceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 466788999999999999999999998887644444333 234444444455556777776643 222222222 568
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
|++.++||.+++ .++............ ....|+++|++|+|+...
T Consensus 497 Dv~~~~YDsS~p-~sf~~~a~v~~~~~~-----~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 497 DVACLVYDSSNP-RSFEYLAEVYNKYFD-----LYKIPCLMVATKADLDEV 541 (625)
T ss_pred eeEEEecccCCc-hHHHHHHHHHHHhhh-----ccCCceEEEeeccccchh
Confidence 999999999986 666666555444332 278999999999999654
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.67 E-value=4.8e-08 Score=73.63 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
.+++++|.+|+|||||+|+|.+.... .++.....+. ......+++ .+.+|||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~--~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV--SVSATPGKTK--HFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce--eeCCCCCccc--ceEEEEeCC---CEEEEECCCcC
Confidence 38999999999999999999987642 1221211122 222222233 57999999964
No 346
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.63 E-value=5.3e-07 Score=72.39 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~~~ 136 (267)
..+|+++|.|.+|||||+..++.... ...++..++-+..-... ..++..+++.|.||.-+-.+. ....
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S---eaA~yeFTTLtcIpGvi--~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS---EAASYEFTTLTCIPGVI--HYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh---hhhceeeeEEEeecceE--EecCceEEEecCcccccccccCCCCCceEEEE
Confidence 45899999999999999999987653 22233333322222222 333357999999997643322 2234
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHH
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYD 165 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~ 165 (267)
.+.+|.+++|.|++..+..-+.+...+..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~ 165 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEA 165 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHH
Confidence 57799999999999863222233444443
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.61 E-value=4.2e-08 Score=79.72 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----------Cchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----------RLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----------~~~~ 131 (267)
.+.+.++++|..|+|||||+|.+............ -++.+-..+...++ .++.++|.||.. ++..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~--K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS--KNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC--CCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhH
Confidence 56689999999999999999998875532211111 11222333333333 368899999932 2233
Q ss_pred hHHhhhccC---CEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....|+-+- -.+.+.+|++-+- ........|+.+ .+.|..+|+||||...
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---------~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---------NNVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---------cCCCeEEeeehhhhhh
Confidence 344454332 2455667776531 223344555543 8899999999999753
No 348
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.60 E-value=1.2e-07 Score=79.66 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++. ......++. .+.++||||..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~--~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVA--KVGNRPGVTK--GQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCCeec--ceEEEEeCC---CEEEEECCCcc
Confidence 45678999999999999999999986532 1122222122 222222222 57999999984
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=1.6e-06 Score=70.50 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeeeeccccce-eEeecccCCCccccEEEEeCCCCCCchh---h---
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDT-FVLHSESTKGKIKPVHLVDVPGHSRLRP---K--- 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~--- 132 (267)
.+...|+|+|++++|||+|+|+|.+. .+... .+..+++.. +........+....+.++||||..+... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~--~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM--DTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec--CCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 34557999999999999999999998 54321 122222222 2222111122346899999999875432 1
Q ss_pred HHhhhc--cCCEEEEEEeCCCC
Q 024474 133 LDEFLP--QAAGIVFVVDALEF 152 (267)
Q Consensus 133 ~~~~~~--~~d~ii~v~d~~~~ 152 (267)
....+. -++++||..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 112222 38999998887654
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.57 E-value=4.5e-08 Score=74.57 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999864
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.56 E-value=4e-07 Score=76.87 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
....+++++|.||+|||||+|+|.+.... .+...+.++. .......+. .+.++||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~--~~~~~~g~T~--~~~~~~~~~---~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA--KTGNRPGVTK--AQQWIKLGK---GLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc--ccCCCCCeEE--EEEEEEeCC---cEEEEECCCcCC
Confidence 45679999999999999999999986531 1222222222 222222222 588999999764
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=1.3e-07 Score=75.00 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc------ceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ------GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
...+++++|.+|+|||||+|+|.+..... ..++..+. ++........+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcCC
Confidence 45689999999999999999999754311 11222222 222222222222 5789999994
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.55 E-value=1.4e-07 Score=73.44 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=59.2
Q ss_pred CCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.||+. +........+.++|++++|+|++++...... .+...+ .+.|+++|+||+|+... ....+.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~---~i~~~~-------~~k~~ilVlNK~Dl~~~---~~~~~~~ 68 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP---LLEKIL-------GNKPRIIVLNKADLADP---KKTKKWL 68 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh---hhHhHh-------cCCCEEEEEehhhcCCh---HHHHHHH
Confidence 35543 2334456778899999999999875222111 111111 35789999999999532 1111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+. .....++.+||++|+ +++|.+.|.+.+
T Consensus 69 ----~~~~-----------------------------~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 69 ----KYFE-----------------------------SKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----HHHH-----------------------------hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1110 001247889999999 999999988764
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.53 E-value=3.2e-07 Score=71.47 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
...++++++|.+|+|||||+|++.+..+. .+..... .+.......++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~--~~~~~~~--~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA--KVGNKPG--VTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce--eecCCCC--EEeeeEEEEec---CCEEEEECCCC
Confidence 45579999999999999999999987642 1111111 11222222222 36899999995
No 355
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.50 E-value=1.2e-06 Score=67.37 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=39.5
Q ss_pred cccEEEEeCCCCCCchhhHHhh--------hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEF--------LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
.....++||||..+........ .-..|.+++++|+............ +..-+.. .+ ++|+||+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~-~~~Qi~~-----ad---~ivlnk~ 156 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTE-AQSQIAF-----AD---RILLNKT 156 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHH-HHHHHHH-----CC---EEEEecc
Confidence 3577899999987655554432 2347899999998764221211122 2222222 22 6799999
Q ss_pred CC
Q 024474 187 DK 188 (267)
Q Consensus 187 Dl 188 (267)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
No 356
>PRK00098 GTPase RsgA; Reviewed
Probab=98.50 E-value=5.4e-07 Score=76.46 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=57.0
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+.++|++++|+|+.++.........|+..+.. .++|+++|+||+|+... .+... ...+..+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~~~-~~~~~~~---------- 138 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA------NGIKPIIVLNKIDLLDD--LEEAR-ELLALYR---------- 138 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH------CCCCEEEEEEhHHcCCC--HHHHH-HHHHHHH----------
Confidence 57899999999998762333444566554432 67899999999999632 11111 1111111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+..++++||++|+ +++|+++|...
T Consensus 139 ----------------------~~g~~v~~vSA~~g~gi~~L~~~l~gk 165 (298)
T PRK00098 139 ----------------------AIGYDVLELSAKEGEGLDELKPLLAGK 165 (298)
T ss_pred ----------------------HCCCeEEEEeCCCCccHHHHHhhccCc
Confidence 112468999999999 99999887643
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=4.5e-07 Score=69.45 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=50.3
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHH-HHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLY-DILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+.++..+.. .++. ..+. ..++|+++|+||+|+... +...+.+.. +..
T Consensus 1 Dvvl~VvD~~~p~~~~~---~~i~~~~~~-----~~~~p~IiVlNK~Dl~~~---~~~~~~~~~-~~~------------ 56 (155)
T cd01849 1 DVILEVLDARDPLGTRS---PDIERVLIK-----EKGKKLILVLNKADLVPK---EVLRKWLAY-LRH------------ 56 (155)
T ss_pred CEEEEEEeccCCccccC---HHHHHHHHh-----cCCCCEEEEEechhcCCH---HHHHHHHHH-HHh------------
Confidence 78999999987632222 2232 2222 267899999999999643 221111111 110
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++.+||++|. +++|.+.|.+.
T Consensus 57 -------------------~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 57 -------------------SYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred -------------------hCCceEEEEeccCCcChhhHHHHHHHH
Confidence 112357889999999 99999988653
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.49 E-value=8.9e-07 Score=67.81 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.+|+||||++|++.+.... .+..... .+........+ ..+.+|||||.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~--~~~~~~~--~t~~~~~~~~~---~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSA--STSPSPG--YTKGEQLVKIT---SKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCC--eeeeeEEEEcC---CCEEEEECcCC
Confidence 45678999999999999999999975421 1111111 11222222122 26899999994
No 359
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.48 E-value=5.8e-07 Score=75.89 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=59.6
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+.++|.+++|+|+.++..+...+..|+..+.. .++|+++|+||+||... .+. ... .....
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~------~~ip~iIVlNK~DL~~~--~~~-~~~-~~~~~--------- 135 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA------AGIEPVIVLTKADLLDD--EEE-ELE-LVEAL--------- 135 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEHHHCCCh--HHH-HHH-HHHHH---------
Confidence 477899999999998863266777777765443 57899999999999643 111 000 00000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
..+.+++++||++|. +++|.++|..
T Consensus 136 -----------------------~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 -----------------------ALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----------------------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence 123468899999999 9999988864
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=9e-07 Score=76.30 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc-ccc--eeeeeccccceeEeeccc-------C---CCccccEEEEeCCCCCCc--
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGST-HQG--TVTSMEPNEDTFVLHSES-------T---KGKIKPVHLVDVPGHSRL-- 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~l~DtpG~~~~-- 129 (267)
.++.++|.||+|||||+|.|++... ..+ .-+|+.|+.+...+.... + ......+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5899999999999999999998764 222 223345555444433211 1 111236899999997542
Q ss_pred -----hhhHHhhhccCCEEEEEEeCCC
Q 024474 130 -----RPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 130 -----~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
....-..++.+|+++.|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2245567899999999999864
No 361
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.5e-07 Score=77.52 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=72.6
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
.+.++|+||++-.-...-.-..--|++++++-.++.. +.-+++.. .++. .-..++++-||+||..+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-------~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-------KLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-------hhceEEEEechhhhhhHHH
Confidence 5789999998754333222222357788888776531 12222211 1122 2245899999999998776
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 194 KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..+.+.+.+..- ...+.+++++||--+- |+.+.|+|.++++
T Consensus 197 A~eq~e~I~kFi~~t-----------------------------~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGT-----------------------------VAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHHhcc-----------------------------ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 666666666544421 1345578999999998 9999999999865
No 362
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=6.7e-07 Score=77.87 Aligned_cols=100 Identities=24% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~ 204 (267)
.++|..+...+.+.++++++|+|+.+...++ ...+.+.+ .+.|+++|+||+|+.+.. ..+.+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~-------~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV-------GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh-------CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 3467777888889999999999998763322 22232222 367999999999997543 333344333332
Q ss_pred HHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 205 IDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..... .....++++||++|. ++++++.|.++
T Consensus 120 ~k~~g-----------------------------~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKELG-----------------------------LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHcC-----------------------------CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22110 001147889999999 99999998764
No 363
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.46 E-value=5.1e-07 Score=75.47 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=62.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccC----------CCccccEEEEeCCCCC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSEST----------KGKIKPVHLVDVPGHS 127 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~DtpG~~ 127 (267)
|.....++.|+|.||+|||||+|.|++.....+. -.|+.|+.....+....+ ......++++|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3456779999999999999999999987654322 235666655443332211 1122468999999975
Q ss_pred Cc-------hhhHHhhhccCCEEEEEEeCCC
Q 024474 128 RL-------RPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 128 ~~-------~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.- ....-..++.+|+++-|+++..
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 32 2234467788999999998764
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=3.9e-07 Score=69.76 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGH 126 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~ 126 (267)
....+++++|.+|+|||||+|.|.+.... .+.....++..... ...+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~--~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL--KVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc--cccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence 46788999999999999999999986521 11112222222222 1112 35899999994
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.44 E-value=4.1e-07 Score=76.43 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=59.7
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+..+|++++|+|+..+..+.. ..+.+.+ .+.|+++|+||+|+.+. ....+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~---~~i~~~l-------~~kp~IiVlNK~DL~~~---~~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN---PMIDEIR-------GNKPRLIVLNKADLADP---AVTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC---hhHHHHH-------CCCCEEEEEEccccCCH---HHHHHHH
Confidence 366542 23346678889999999999987522222 2222222 35799999999999642 1111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+.. ....++.+||++|. +++|.+.|.+.+
T Consensus 71 -~~~~~--------------------------------~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 71 -KYFEE--------------------------------KGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred -HHHHH--------------------------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11110 01247889999999 999988887654
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.41 E-value=5e-06 Score=73.28 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=38.6
Q ss_pred cccEEEEeCCCCCCchhhHH----hh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLD----EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.|+||||........- .+ ....|-+++|+|+..+ .........+.+. -.+--+|+||.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G-q~a~~~a~~F~~~---------~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG-QAAEAQAKAFKDS---------VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC-hhHHHHHHHHHhc---------cCCcEEEEECccC
Confidence 47899999999765433221 11 2346889999999876 2233333333221 1234677888885
Q ss_pred C
Q 024474 189 V 189 (267)
Q Consensus 189 ~ 189 (267)
.
T Consensus 252 ~ 252 (429)
T TIGR01425 252 H 252 (429)
T ss_pred C
Confidence 3
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.41 E-value=2.3e-06 Score=73.89 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=60.4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..++|.+++|++.... .++..+..|+.... ..++|+++|+||+||......... .+.+..+.
T Consensus 118 aANvD~vlIV~s~~p~-~s~~~Ldr~L~~a~------~~~i~~VIVlNK~DL~~~~~~~~~----~~~~~~y~------- 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LSLNIIDRYLVACE------TLGIEPLIVLNKIDLLDDEGRAFV----NEQLDIYR------- 179 (347)
T ss_pred EEEccEEEEEEeCCCC-CCHHHHHHHHHHHH------hcCCCEEEEEECccCCCcHHHHHH----HHHHHHHH-------
Confidence 3568999999998654 67888888876442 267899999999999754221111 11111110
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ +++|+++|.+.
T Consensus 180 ----------------------~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 ----------------------NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred ----------------------hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112478999999999 99999999764
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.40 E-value=8.3e-07 Score=66.84 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHhhhccCCEEEEEEeCCCCCCch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
....+..+|++++|+|+.++.... ..+..++... ..++|+++|+||+|+..
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------DPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------cCCCcEEEEEechhcCC
Confidence 456788999999999998763322 2333433321 14689999999999864
No 369
>PRK12288 GTPase RsgA; Reviewed
Probab=98.38 E-value=2.9e-07 Score=79.39 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-cceeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCch
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
.++++|.+|||||||+|+|.+.... .+.++.....+ ++.......+.+. ..++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 4899999999999999999976432 11111111111 1111222222222 2599999988753
No 370
>PRK12289 GTPase RsgA; Reviewed
Probab=98.34 E-value=9.2e-07 Score=76.38 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++|+|++|||||||+|+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 58999999999999999999764
No 371
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.29 E-value=1.1e-06 Score=74.26 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+..+|++|+|+|+..+..+.. .++.+.+ .+.|+++|+||+|+.+. ....+ .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~---~~l~~~~-------~~kp~iiVlNK~DL~~~---~~~~~-~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN---PMIDKII-------GNKPRLLILNKSDLADP---EVTKK-W 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC---hhHHHHh-------CCCCEEEEEEchhcCCH---HHHHH-H
Confidence 467542 23345678889999999999987522221 2233332 35789999999999632 11111 1
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.+. .....++.+||++|. +++|.+.|.+.+
T Consensus 73 ~~~~~--------------------------------~~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 73 IEYFE--------------------------------EQGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred HHHHH--------------------------------HcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 11111 001346889999999 888888776653
No 372
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=69.84 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc
Q 024474 13 MEQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFR-RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ 91 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~ 91 (267)
.....+.++........+..+.......+......+..+.....+..+ ...++.+.|+|-||+|||||+|.+.......
T Consensus 91 ~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk 170 (335)
T KOG2485|consen 91 QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRK 170 (335)
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhh
Confidence 344445444442222223333333332233333333333332223222 4678999999999999999999875432211
Q ss_pred ceeeeeccc-cceeEeec-ccCCCccccEEEEeCCCCCC
Q 024474 92 GTVTSMEPN-EDTFVLHS-ESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~l~DtpG~~~ 128 (267)
....+.+.. +.+..+.. ..+... -.+.++||||...
T Consensus 171 ~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 171 KKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred ccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 111112211 22222222 222222 3689999999653
No 373
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=3.6e-06 Score=68.61 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccC--CCccccEEEEeCCCCCCc-------hhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRL-------RPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~-------~~~ 132 (267)
.-.++|+.+|..|.|||||+..|.+..+.....+-..|+ .......... .+-..+++++||.|..+. .+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~-V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPN-VKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCC-ceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 445799999999999999999999988754333222221 1122222222 334467899999997642 211
Q ss_pred -------HHhhh---------------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 -------LDEFL---------------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 -------~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.|+ .+.++++|.+.++.. ++..+.-....-+. ....||-|+-|.|-..
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH--~LKslDLvtmk~Ld------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH--SLKSLDLVTMKKLD------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc--chhHHHHHHHHHHh------hhhhhHHHHHHhhhhh
Confidence 22222 246899999999873 45555443333332 5667888999999754
Q ss_pred C
Q 024474 191 A 191 (267)
Q Consensus 191 ~ 191 (267)
.
T Consensus 191 K 191 (406)
T KOG3859|consen 191 K 191 (406)
T ss_pred H
Confidence 3
No 374
>PRK13796 GTPase YqeH; Provisional
Probab=98.24 E-value=4e-06 Score=73.12 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc--c-eeeeeccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ--G-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
...++.++|.+|||||||+|+|.+..... . .++..+.++. .......++ ...++||||...
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~--~~~~~~l~~---~~~l~DTPGi~~ 222 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL--DKIEIPLDD---GSFLYDTPGIIH 222 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc--eeEEEEcCC---CcEEEECCCccc
Confidence 34589999999999999999998643111 1 1222322222 222222222 247999999853
No 375
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.23 E-value=2.9e-06 Score=66.54 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=46.6
Q ss_pred cccEEEEeCCCCCCchhhH--Hh---hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKL--DE---FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~--~~---~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.....++.+.|..+..... .. ..-..+.++.|+|+... .........+..-++.++ ++|+||+|+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~~AD--------vIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIAFAD--------VIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHCT-S--------EEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccc-cccccchhhhhhcchhcC--------EEEEeccccC
Confidence 3577889999977665551 11 12246899999999764 223344444444444432 7999999987
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 024474 190 TAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~ 208 (267)
+... ..+.+.+.++++
T Consensus 155 ~~~~---~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDEQ---KIERVREMIREL 170 (178)
T ss_dssp HHH-----HHHHHHHHHHH
T ss_pred Chhh---HHHHHHHHHHHH
Confidence 5431 223444444444
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.23 E-value=1.2e-06 Score=72.27 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|+|||||+|+|.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 479999999999999999999764
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=8.4e-05 Score=62.19 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=40.6
Q ss_pred ccccEEEEeCCCCCCchhhHH----h---hh-----ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLD----E---FL-----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLI 181 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pviv 181 (267)
..+.+.++||||......... . .. ..+|.+++|+|++.+.+.+... ....+. . .+--+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~-----~-~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEA-----V-GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhh-----C-CCCEE
Confidence 346899999999765333211 1 11 1378999999998652223222 222221 1 13478
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998544
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.20 E-value=8.1e-06 Score=71.13 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhh---
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFL--- 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~--- 137 (267)
+.+++++|.+|+|||||+|+|++..... ..++..+.++ ........++ .+.++||||....... ..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~~~~~-~~~l~~~ 227 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIINSHQM-AHYLDKK 227 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCChhHh-hhhcCHH
Confidence 4699999999999999999999754211 1222222222 2222222222 3679999998754322 2211
Q ss_pred --------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 138 --------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 138 --------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+....+.+.+|.... -.+.. ..++. .+ ......+.++++|.+.......+...+.+++.
T Consensus 228 ~l~~~~~~~~i~~~~~~l~~~q~-~~~gg-l~~~d-~~-----~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 228 DLKYITPKKEIKPKTYQLNPNQT-LFLGG-LARFD-YL-----KGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred HHhhcCCCCccCceEEEeCCCCE-EEEce-EEEEE-Ee-----cCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 234566777665542 01110 01110 11 12345678888888766554444444444443
No 379
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.7e-06 Score=72.21 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999998764
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.17 E-value=1.1e-05 Score=61.16 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=37.3
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++||+|... ....++..+|.++++..+... +...-.+. .++.. -=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~-D~y~~~k~---~~~~~--------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG-DDIQAIKA---GIMEI--------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch-hHHHHhhh---hHhhh--------cCEEEEeCCC
Confidence 47899999999653 223588889999999887743 22222222 22221 1278999998
No 381
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.17 E-value=7.4e-06 Score=81.55 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccee---eeeccccceeEeecccCCCccccEEEEeCCCCC--------CchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---TSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS--------RLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~--------~~~~~~ 133 (267)
+=.+|+|++|+||||+++.- +-.++-... ......+.+..+..-. . -.-.++||+|.- .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~---~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-T---DEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-c---CCEEEEcCCCccccCCCcccccHHHH
Confidence 55899999999999999976 333321110 0000111111111110 1 146799999932 122345
Q ss_pred Hhhh---------ccCCEEEEEEeCCCCCC-ch-------HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 134 DEFL---------PQAAGIVFVVDALEFLP-NC-------SAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 134 ~~~~---------~~~d~ii~v~d~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..++ +-.++||+++|+.+-.. +- ..+...+.++.+. .....||.||+||+|+.
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~---lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ---LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEecchhh
Confidence 5443 34799999999875311 11 1233344444443 24789999999999976
No 382
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3e-06 Score=72.43 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--------------cc-----ceee----eec---cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--------------HQ-----GTVT----SME---PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--------------~~-----~~~~----~~~---~~~~~~~~~~~~~~~~~ 115 (267)
....+++++|...+||||+-..+....- .+ -+.+ +.. ..+.+............
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 5678999999999999998765532100 00 0000 000 00111222222223333
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--CchH---HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNCS---AASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~---~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.++++.|+||+..|.+....-..++|+-++|+++..++ ..++ +..+....... ..-...|+++||+|-..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-----~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----AGVKHLIVLINKMDDPT 231 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-----hccceEEEEEEeccCCc
Confidence 57999999999999888777788999999999985421 1121 11222211111 14456899999999776
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHH
Q 024474 191 AHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVE 258 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~ 258 (267)
..-..+..+++...+..+-. ... |. ....+.|++||..+|. +.+..
T Consensus 232 vnWs~eRy~E~~~k~~~fLr-~~g--------------------~n-~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLR-KLG--------------------FN-PKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCcchhhHHHHHHHHHHHHH-Hhc--------------------cc-CCCCceeeecccccccchhhcc
Confidence 55444444444333332211 000 00 0235678899999997 66544
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=2.8e-05 Score=66.46 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccce---eeeeccc---------------cceeEeeccc-------------C
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT---VTSMEPN---------------EDTFVLHSES-------------T 111 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~-------------~ 111 (267)
++..++++|++|+||||++..|...-...+. +.+.++. ...+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999887542111110 1111100 0001000000 0
Q ss_pred CCccccEEEEeCCCCCCchhh----HHhhh--------ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE
Q 024474 112 KGKIKPVHLVDVPGHSRLRPK----LDEFL--------PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV 179 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv 179 (267)
....+.+.++||||....... ..... ...+..++|+|++.+.+.+... ....+ .-.+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~------~~~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHE------AVGLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHh------hCCCC
Confidence 123468999999997643222 22221 2467899999999763333332 22211 11234
Q ss_pred EEEEecCCCC
Q 024474 180 LICCNKTDKV 189 (267)
Q Consensus 180 ivv~nK~Dl~ 189 (267)
-+|+||.|..
T Consensus 263 giIlTKlD~t 272 (318)
T PRK10416 263 GIILTKLDGT 272 (318)
T ss_pred EEEEECCCCC
Confidence 7899999954
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.16 E-value=4.1e-06 Score=70.76 Aligned_cols=62 Identities=26% Similarity=0.254 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..++++|++|+|||||+|.|.+...... .++.....+ ++.........+ ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 5899999999999999999998653221 121100001 111112222222 2369999998765
No 385
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.15 E-value=2.2e-06 Score=75.30 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
...|.++|-|||||||+||.|.+.+. ..+++.+ +.+..+.+..+.. .+.+.||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TP--GkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTP--GKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce--eeeecCC--CCcceeEEEEcCC---CceecCCCCcc
Confidence 57899999999999999999999863 1333333 3334444444444 57899999965
No 386
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.14 E-value=1.8e-05 Score=67.47 Aligned_cols=82 Identities=32% Similarity=0.428 Sum_probs=52.9
Q ss_pred ccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
....++.|.|..+..+....+.. ..|+++-|+|+...........+.+.+-+..+. ++|+||+|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD--------~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD--------VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc--------EEEEeccc
Confidence 56789999999887666554433 257899999998763333334445554444332 79999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~ 209 (267)
+.++.. .+.+++.+.+++
T Consensus 157 lv~~~~----l~~l~~~l~~ln 174 (323)
T COG0523 157 LVDAEE----LEALEARLRKLN 174 (323)
T ss_pred CCCHHH----HHHHHHHHHHhC
Confidence 987653 344445555543
No 387
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.13 E-value=3.8e-06 Score=67.88 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhhc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFLP 138 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~~ 138 (267)
++.++|.|.+||||++..|++... .+.++..++ +..-...+..+.-++++.|.||.-+-.. ......+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s---~vasyeftt--l~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTT--LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC---cccccccee--EEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 899999999999999999998643 333333322 2211222223335899999999754211 1223456
Q ss_pred cCCEEEEEEeCCCC
Q 024474 139 QAAGIVFVVDALEF 152 (267)
Q Consensus 139 ~~d~ii~v~d~~~~ 152 (267)
.|..+++|.|+..+
T Consensus 136 tcnli~~vld~~kp 149 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKP 149 (358)
T ss_pred cccEEEEEeeccCc
Confidence 78899999998765
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=2.5e-06 Score=71.06 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-ccceeeeecccc--ceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST-HQGTVTSMEPNE--DTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
....+++|++|+|||||+|+|..... ..+.++.....+ ++.........+.+ .++||||+.++
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 34789999999999999999987432 111222211111 11112222222222 48999998765
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=2.7e-05 Score=67.66 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc---cee--eeecccc-------------ceeEeeccc---------CCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTV--TSMEPNE-------------DTFVLHSES---------TKGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~--~~~~~~~-------------~~~~~~~~~---------~~~~ 114 (267)
.++..++++|++|+||||++.+|....... ..+ .+.+... ......... ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345689999999999999999986532100 011 1111100 000111010 0112
Q ss_pred cccEEEEeCCCCCCchhhHHh---hhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDE---FLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~---~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
...+.++||+|.......... .+. ...-.++|++++...+.+......+.......... ..-+-=+|+||.|-
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~-~~~~~~~I~TKlDE 293 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAA-LPDLAGCILTKLDE 293 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccc-cCCCCEEEEecccc
Confidence 358999999997754333222 222 23456899999876334444433333332110000 00123477899997
Q ss_pred CC
Q 024474 189 VT 190 (267)
Q Consensus 189 ~~ 190 (267)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 54
No 390
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=3.8e-05 Score=57.86 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCC-CCC--------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVP-GHS-------------- 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dtp-G~~-------------- 127 (267)
...+|.+.|+||+||||++.++...--..+. ..+-+......-+++..-|.++|.. |-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~------kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY------KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc------eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 4569999999999999999988642111100 0111222222234444556666665 211
Q ss_pred C-----------chhhHHhhhccCCEEEEEEeCCCC-CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 128 R-----------LRPKLDEFLPQAAGIVFVVDALEF-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 128 ~-----------~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
. ..+..++.++.+|++| +|=-.+ +-......+.+.+++. .+.|++.++.+-+.
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~------~~kpliatlHrrsr 142 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK------SGKPLIATLHRRSR 142 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc------CCCcEEEEEecccC
Confidence 0 1122334566678665 563322 1112233334444443 77899999887764
No 391
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.09 E-value=0.00011 Score=65.36 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc--c---cceeeeecccc-------------ceeEeeccc--------C-CCccc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST--H---QGTVTSMEPNE-------------DTFVLHSES--------T-KGKIK 116 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~--~---~~~~~~~~~~~-------------~~~~~~~~~--------~-~~~~~ 116 (267)
+..++++|++|+||||++..|..... . .....+.++.. ......... + ....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45899999999999999887753221 1 11111222210 000010000 0 11236
Q ss_pred cEEEEeCCCCCCchh----hHHhhhc---cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 117 PVHLVDVPGHSRLRP----KLDEFLP---QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.++||||...... ....++. ...-+.+|++++.. ...+...+..+-. .+ +--+++||.|-.
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---~~~l~~~~~~f~~------~~-~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---YEDLKDIYKHFSR------LP-LDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---HHHHHHHHHHhCC------CC-CCEEEEeccccc
Confidence 899999999764421 2333443 23467788888764 2233332222211 11 125889999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 3
No 392
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.08 E-value=9.4e-05 Score=65.86 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=52.3
Q ss_pred cEEEEeCCCCCC-------------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 117 PVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 117 ~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+..++|.||... ...+...|+.+..+||+|+.-.. .+....-.-+++.+.. +.+...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDLVsq~D--P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDLVSQMD--PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHHHHhcC--CCCCeeEEEE
Confidence 578999999642 22345578999999999985433 2233333344444443 4788899999
Q ss_pred ecCCCCCCC--CHHHHHHHHH
Q 024474 184 NKTDKVTAH--TKEFIRKQME 202 (267)
Q Consensus 184 nK~Dl~~~~--~~~~~~~~l~ 202 (267)
+|.|+.... +++.+++.++
T Consensus 487 TKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 487 TKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred eecchhhhccCCHHHHHHHHh
Confidence 999997652 4555554444
No 393
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.07 E-value=0.00013 Score=54.69 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcccc---eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 68 VLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 68 ~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+.-|.+|+|||++.-.+...-...+ -....+++... -.+.+.++|+|+.. .......+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~----------~~yd~VIiD~p~~~--~~~~~~~l~~aD~vv 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN----------LDYDYIIIDTGAGI--SDNVLDFFLAADEVI 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC----------CCCCEEEEECCCCC--CHHHHHHHHhCCeEE
Confidence 4567799999999776543211111 11122221111 11689999999854 344456788999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
++++++.. ++......+..+... ....++.+|+|+.+-. ...++..+.+++..++
T Consensus 72 iv~~~~~~--s~~~~~~~l~~l~~~----~~~~~~~lVvN~~~~~--~~~~~~~~~~~~~~~r 126 (139)
T cd02038 72 VVTTPEPT--SITDAYALIKKLAKQ----LRVLNFRVVVNRAESP--KEGKKVFKRLSNVSNR 126 (139)
T ss_pred EEcCCChh--HHHHHHHHHHHHHHh----cCCCCEEEEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 99998863 455555555444332 1345678999999732 3344455555554443
No 394
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.07 E-value=6.4e-05 Score=64.98 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=27.2
Q ss_pred ccEEEEeCCCCCCchhhHHhhh-------ccCCEEEEEEeCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFL-------PQAAGIVFVVDALE 151 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~-------~~~d~ii~v~d~~~ 151 (267)
....++.|.|..+..+....+. -..|+++.|+|+..
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 5678999999988777665442 14578999999974
No 395
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=5.3e-05 Score=64.78 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=47.4
Q ss_pred ccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
....++.|.|..+..+....++. ..++++.|+|+........... ....-+.. .+ ++|+||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~-----AD---~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGY-----AD---RILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHh-----CC---EEEEeccc
Confidence 56789999999887666655422 2478999999976422121111 12122222 22 79999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+..+. +.+.+.+..++.
T Consensus 162 l~~~~------~~~~~~l~~lnp 178 (318)
T PRK11537 162 VAGEA------EKLRERLARINA 178 (318)
T ss_pred cCCHH------HHHHHHHHHhCC
Confidence 98631 345555555543
No 396
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.04 E-value=2.8e-05 Score=61.81 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=37.5
Q ss_pred ccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||||....... ...++ ...+-+++|+|++...+.+. ......+. .+. -=+++||.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~----~~~~~~~~-----~~~-~~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE----QALAFYEA-----FGI-DGLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH----HHHHHHHH-----SST-CEEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH----HHHHHhhc-----ccC-ceEEEEeecCC
Confidence 67999999997754332 22222 24678999999987522222 22222221 111 24679999975
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 397
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.03 E-value=6.6e-06 Score=66.57 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=56.4
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC---------CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL---------PNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.++++|.+|+.+-+..|...+.+..+||||+.++... +.+++....+..+-.+. +...+.+|+++||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR--wL~tisvIlFLNKq 279 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR--WLRTISVILFLNKQ 279 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh--HHhhhheeEEecHH
Confidence 56899999999999999999999999999999876421 23445555555555543 23678899999999
Q ss_pred CCCC
Q 024474 187 DKVT 190 (267)
Q Consensus 187 Dl~~ 190 (267)
|+..
T Consensus 280 Dlla 283 (379)
T KOG0099|consen 280 DLLA 283 (379)
T ss_pred HHHH
Confidence 9863
No 398
>PRK14974 cell division protein FtsY; Provisional
Probab=98.02 E-value=2.8e-05 Score=66.74 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=39.4
Q ss_pred ccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||+|....... .... ....|.+++|+|+..+.+..... ..+...+ + .--+|+||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-~~f~~~~--------~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-REFNEAV--------G-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-HHHHhcC--------C-CCEEEEeeecCC
Confidence 57999999997643222 2222 22578999999998763222222 2222211 1 246899999986
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 43
No 399
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.00 E-value=1.1e-05 Score=71.59 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.-+..|+.|+|..++|||+|+++++.+.+ +....|.++.+....+ +++....+.+-|-+|..+ ..|...+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty----~~~e~~e~~~~kkE~v-v~gqs~lLlirdeg~~~~-----aQft~wv 96 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTY----TQDESPEGGRFKKEVV-VDGQSHLLLIRDEGGHPD-----AQFCQWV 96 (749)
T ss_pred ccchhheeeeecccCCceeeeeeecccee----ccccCCcCccceeeEE-eeccceEeeeecccCCch-----hhhhhhc
Confidence 44667999999999999999999888764 3334444555554433 355556777888877332 3566778
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
|++||||...+. .+++.+..+...+-.+.. ...+|+++++++.=
T Consensus 97 davIfvf~~~d~-~s~q~v~~l~~~l~~~r~--r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 97 DAVVFVFSVEDE-QSFQAVQALAHEMSSYRN--ISDLPLILVGTQDH 140 (749)
T ss_pred cceEEEEEeccc-cCHHHHHHHHhhcccccc--cccchHHhhcCcch
Confidence 999999999886 677777766655543322 36778888887643
No 400
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=4.4e-05 Score=66.68 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=54.4
Q ss_pred hhccCC-EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhh
Q 024474 136 FLPQAA-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 136 ~~~~~d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~ 213 (267)
.+...+ .+++|+|+.+...++ ...+.++. .+.|+++|+||+|+.+.. ..+.+.+.+........
T Consensus 65 ~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~-------~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g---- 130 (365)
T PRK13796 65 GIGDSDALVVNVVDIFDFNGSW---IPGLHRFV-------GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG---- 130 (365)
T ss_pred hhcccCcEEEEEEECccCCCch---hHHHHHHh-------CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC----
Confidence 334455 999999998863332 22333322 367899999999997532 22333322222111100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.....++.+||++|. +++|++.|.++
T Consensus 131 -------------------------~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 -------------------------LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -------------------------CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 001147889999999 99999998765
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=0.00028 Score=63.71 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-----cceeeeecccc-------------ceeEeecccC---------CCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-----QGTVTSMEPNE-------------DTFVLHSEST---------KGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-----~~~~~~~~~~~-------------~~~~~~~~~~---------~~~ 114 (267)
..+..++++|++|+||||++..|...-.. .....+.++.. ..+.+..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34678999999999999999887642110 01111111100 0011111000 112
Q ss_pred cccEEEEeCCCCCCchhhHHh---hhc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDE---FLP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~Dl~eii~~f~~-------~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSDLDEVVRRFAH-------AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhHHHHHHHHHHh-------hCCeEEEEecCcCc
Confidence 368999999997543222111 111 12346777887753 3334333333321 23567999999974
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 3
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.93 E-value=0.00019 Score=55.88 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=40.1
Q ss_pred cccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||...+... ...+ ....+.+++|+|+... ....+......+. .+ ..-+|.||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~----~~~~~~~~~~~~~-----~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG----QDAVNQAKAFNEA-----LG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC----hHHHHHHHHHHhh-----CC-CCEEEEECCcC
Confidence 456899999997533221 1111 1348999999998654 2223344444332 22 25678899997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 643
No 403
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.93 E-value=1e-05 Score=69.07 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=45.1
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.+...+++.+.|.++|-||+||||++|.|...++. .+..++..+..+.+ +..- .++.++|+||.-..
T Consensus 299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC--kvAPIpGETKVWQY--ItLm---krIfLIDcPGvVyp 365 (572)
T KOG2423|consen 299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC--KVAPIPGETKVWQY--ITLM---KRIFLIDCPGVVYP 365 (572)
T ss_pred HhhccCccceeeeeecCCCCchHHHHHHHhhcccc--cccCCCCcchHHHH--HHHH---hceeEecCCCccCC
Confidence 34445778899999999999999999999987753 22223333322222 2111 37899999997543
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.91 E-value=4.9e-05 Score=46.91 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=29.8
Q ss_pred cCCEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 139 QAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
-.++++|++|++... .+.++....+.++... -.+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL----FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH----TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH----cCCCCEEEEEeccC
Confidence 368999999998742 3677777777777764 25899999999998
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.88 E-value=0.00017 Score=62.55 Aligned_cols=118 Identities=21% Similarity=0.188 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc------ccceeeeeccccc------------eeEeeccc---------CCCcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGST------HQGTVTSMEPNED------------TFVLHSES---------TKGKI 115 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~------~~~~~~~~~~~~~------------~~~~~~~~---------~~~~~ 115 (267)
+...|+++||.||||||-+-+|..... .-+.+++-....+ ..++.... ..-..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 377899999999999999887754322 1111111000000 00011000 01233
Q ss_pred ccEEEEeCCCCCCchhh----HHhhhccC--CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPK----LDEFLPQA--AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~----~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.++||.|...+... ...++..+ .-+-+|++++.. ...+.+.+..+.. .+. -=+++||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---~~dlkei~~~f~~------~~i-~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---YEDLKEIIKQFSL------FPI-DGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---hHHHHHHHHHhcc------CCc-ceeEEEccccc
Confidence 68999999997755443 33444333 345667788764 3444444433322 111 24788999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 4
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.0001 Score=65.01 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
No 407
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.86 E-value=2.2e-05 Score=61.59 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCCchh---h---HHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 117 PVHLVDVPGHSRLRP---K---LDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~---~---~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+-++|+|||-+... . .-+++.+- =+++|++|+.---++......-+..+..- ..-..|-|=|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM---i~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM---ISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH---HHhcCcchhhhhHHH
Confidence 578999999876422 1 22333332 25777777653211222222222222111 125789999999999
Q ss_pred CCCCCCHHHHHHH
Q 024474 188 KVTAHTKEFIRKQ 200 (267)
Q Consensus 188 l~~~~~~~~~~~~ 200 (267)
|......+++...
T Consensus 176 Llk~~~k~~l~~F 188 (273)
T KOG1534|consen 176 LLKDKNKKELERF 188 (273)
T ss_pred HhhhhhHHHHHHh
Confidence 9876554444433
No 408
>PRK01889 GTPase RsgA; Reviewed
Probab=97.86 E-value=0.00014 Score=63.38 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=54.4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
..++|.+++|+++... -+...+..++..+.. .++|.++|+||+||.+. .+...+.+.. +
T Consensus 110 aANvD~vliV~s~~p~-~~~~~ldr~L~~a~~------~~i~piIVLNK~DL~~~--~~~~~~~~~~----~-------- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FNLRRIERYLALAWE------SGAEPVIVLTKADLCED--AEEKIAEVEA----L-------- 168 (356)
T ss_pred EEeCCEEEEEEecCCC-CChhHHHHHHHHHHH------cCCCEEEEEEChhcCCC--HHHHHHHHHH----h--------
Confidence 4678999999999643 233344444433322 67788999999999753 2111121111 0
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHh
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++.+||++|+ +++|.++|..
T Consensus 169 ----------------------~~g~~Vi~vSa~~g~gl~~L~~~L~~ 194 (356)
T PRK01889 169 ----------------------APGVPVLAVSALDGEGLDVLAAWLSG 194 (356)
T ss_pred ----------------------CCCCcEEEEECCCCccHHHHHHHhhc
Confidence 123467889999999 9999999863
No 409
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.84 E-value=2.4e-05 Score=62.27 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=56.6
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC---------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL---------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+-+.++|.+|+..-+..|.+.+.+.-.++|++..+ +.++.+++.+..+..++... |..+.++|+++||
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP--WF~nssVIlFLNK 275 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP--WFQNSSVILFLNK 275 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc--cccCCceEEEech
Confidence 345779999999887888888887776666665443 22245778888888888765 4578899999999
Q ss_pred CCCCCC
Q 024474 186 TDKVTA 191 (267)
Q Consensus 186 ~Dl~~~ 191 (267)
.|+..+
T Consensus 276 kDlLEe 281 (359)
T KOG0085|consen 276 KDLLEE 281 (359)
T ss_pred hhhhhh
Confidence 998654
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.83 E-value=9.9e-06 Score=69.26 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+..+++.|+|-||+||||+||+|....... +..+ +.+.....+..+. .+.|+|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p-----GvT~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP-----GVTRSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc-----cchhhhhheeccC---CceeccCCcee
Confidence 678899999999999999999998876411 1111 1112222222232 68999999964
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00011 Score=63.90 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc---eeeeecccc-------c------eeEeeccc--------C---C-Cc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG---TVTSMEPNE-------D------TFVLHSES--------T---K-GK 114 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~---~~~~~~~~~-------~------~~~~~~~~--------~---~-~~ 114 (267)
+...|+++|++|+||||++..|...-...+ ...+.++.. . ..++.... + . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999998853211110 111111100 0 00000000 0 1 11
Q ss_pred cccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.|+||||....... ....+ ...+.+++|+|++.. ...+...+..+.. .+ .-=+++||.|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---~~d~~~i~~~F~~------~~-idglI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD------IH-IDGIVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---hHHHHHHHHHhcC------CC-CCEEEEEcccC
Confidence 368999999997543221 22333 235778999998754 2333333333221 11 22578999997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 390 T~k 392 (436)
T PRK11889 390 TAS 392 (436)
T ss_pred CCC
Confidence 643
No 412
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.82 E-value=1.4e-05 Score=70.62 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=59.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
....+.++|++|+..-+..|..++.++++||||+++++. .+.+.+....+..+..+..+ .++|+++++|
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~--~~~~iil~ln 311 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF--KNTPIILFLN 311 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG--TTSEEEEEEE
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc--ccCceEEeee
Confidence 346899999999998899999999999999999998642 13466777888888876543 6899999999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|.|+.
T Consensus 312 K~D~f 316 (389)
T PF00503_consen 312 KIDLF 316 (389)
T ss_dssp -HHHH
T ss_pred cHHHH
Confidence 99964
No 413
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.77 E-value=0.00099 Score=52.07 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=47.7
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
..+.+.++|||+... ......+..+|.+++++.++.. +.......+..+.. .+.|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--~~~~~~~~~~~l~~------~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--GLHDLERAVELVRH------FGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--cHHHHHHHHHHHHH------cCCCEEEEEeCCCCC
Confidence 457899999997543 3445667889999999998863 46666555544332 456789999999965
No 414
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00035 Score=60.61 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...++++|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999999998864
No 415
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00077 Score=63.56 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..++++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 457899999999999999998754
No 416
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.69 E-value=0.00019 Score=55.56 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|+||+|||||+++++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.69 E-value=0.00011 Score=65.37 Aligned_cols=23 Identities=52% Similarity=0.678 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+...|+++|++|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45679999999999999988774
No 418
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00044 Score=55.86 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCC--CHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 64 STTIVLAGLSGS--GKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 64 ~~~i~i~G~~~~--GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+-++++|..|+ ||-+|+.+|....+.....++.......+++....+. ..+++.=.+-.+++.-.......-..
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyys---adi~lcishicde~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYS---ADINLCISHICDEKFLPNAEIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeee---cceeEEeecccchhccCCccccccee
Confidence 457899999999 9999999998877643322221111111222111110 01222211211111101111122346
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHH
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 203 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~ 203 (267)
++++|||.+.. +.+..+..|+...--+ ..++ ++.++||.|..+.. ..++.+..+.+
T Consensus 81 a~vmvfdlse~-s~l~alqdwl~htdin----sfdi-llcignkvdrvphhlahdeyrrrl~k 137 (418)
T KOG4273|consen 81 AFVMVFDLSEK-SGLDALQDWLPHTDIN----SFDI-LLCIGNKVDRVPHHLAHDEYRRRLAK 137 (418)
T ss_pred eEEEEEeccch-hhhHHHHhhccccccc----cchh-heecccccccccchhhhhHHHHHHHh
Confidence 78999999986 6688888887532211 1222 57889999987654 34455554443
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.67 E-value=0.00028 Score=56.60 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCC
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 189 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~ 189 (267)
..+++|.+|.|+|++.. ++.. .+.+.++... .+ .++.+|+||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~~--sl~t-aeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK--SLRT-AERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHH--HHHH-HHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 45679999999999873 3433 3344555543 44 7899999999953
No 420
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.65 E-value=0.0001 Score=58.97 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=38.1
Q ss_pred ccEEEEeCCCCCCchh------hHHhhhccCCEEEEEEeCCC---CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRP------KLDEFLPQAAGIVFVVDALE---FLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~------~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
....++|+|||-++-. ..-++++..|.-+.++...+ ..+.-..+...+..+..-. ....|-+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl---~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML---HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH---hhcccchhhhhHh
Confidence 4688999999875421 12245555665444443322 1111222222222222211 2567888899999
Q ss_pred CCCCC
Q 024474 187 DKVTA 191 (267)
Q Consensus 187 Dl~~~ 191 (267)
|+...
T Consensus 174 Dl~~~ 178 (290)
T KOG1533|consen 174 DLLKK 178 (290)
T ss_pred HHHHh
Confidence 98643
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00016 Score=63.42 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...++++|++||||||++.+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999998864
No 422
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.64 E-value=0.00065 Score=56.38 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee----------------ccccceeE-----------eeccc---
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM----------------EPNEDTFV-----------LHSES--- 110 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~----------------~~~~~~~~-----------~~~~~--- 110 (267)
..+.+--++.|.-|+|||||+|.++.+.-. ..+.-+ ...++... ...+.
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hg-KRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHG-KRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCC-ceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 345667889999999999999998765421 111100 00011000 00000
Q ss_pred -------C-CCccccEEEEeCCCCCCchhhHHhhhc--------cCCEEEEEEeCCCCCCchHHH--HHHHHHHHhcCCC
Q 024474 111 -------T-KGKIKPVHLVDVPGHSRLRPKLDEFLP--------QAAGIVFVVDALEFLPNCSAA--SEYLYDILTNSTV 172 (267)
Q Consensus 111 -------~-~~~~~~~~l~DtpG~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~~~--~~~l~~~~~~~~~ 172 (267)
+ ....+.-.++.|.|..+..+....+.. ..|+|+-|+|+-.....+.+. ...+.+...+..
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA- 211 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA- 211 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh-
Confidence 0 122345678999999988777665442 258999999985421001100 011111111100
Q ss_pred CCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 173 VKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 173 ~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
..+ -++.||.||........+++.+.
T Consensus 212 -~AD---~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 212 -LAD---RIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred -hhh---eeeeccccccCHHHHHHHHHHHH
Confidence 011 47899999998766666665554
No 423
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.64 E-value=0.0014 Score=54.89 Aligned_cols=111 Identities=17% Similarity=0.278 Sum_probs=63.1
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc------
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL------ 129 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~------ 129 (267)
....+..+.+.++++|++|.|||++++++....... ..+. ...+.+..+.+|...+-
T Consensus 53 l~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-----~d~~------------~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 53 LEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-----SDED------------AERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred HhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-----CCCC------------CccccEEEEecCCCCChHHHHHH
Confidence 334566788999999999999999999998754211 1110 11134555555543321
Q ss_pred ------------------hhhHHhhhccCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 130 ------------------RPKLDEFLPQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 130 ------------------~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.......++...+=++++|=-.. ..+.......+.-+.... ..-++|+|.||++
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~--NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG--NELQIPIVGVGTR 189 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh--hccCCCeEEeccH
Confidence 11223466777888889983210 012333333322222211 2478999999875
No 424
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.64 E-value=0.00055 Score=57.27 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=60.5
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
-+.+.|-+++|+.+.++.-+...+..+|-..- ..++..++|+||+||........ +.......
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae------~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~--------- 138 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE------AGGIEPVIVLNKIDLLDDEEAAV--KELLREYE--------- 138 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHH------HcCCcEEEEEEccccCcchHHHH--HHHHHHHH---------
Confidence 34457788888888887445555555554332 26778889999999987655443 12221111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...+.++.+|+++++ +++|.++|..+
T Consensus 139 -----------------------~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 139 -----------------------DIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred -----------------------hCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 345678999999999 99999988765
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=97.62 E-value=8.1e-05 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+.+++++|.+|+|||||+|.|.+..
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 34589999999999999999998754
No 426
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00046 Score=60.22 Aligned_cols=134 Identities=22% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHH--HhhcCCCCEEEEEcCCCCCHHHHHHHHHc----CCcccceee--eecc-----
Q 024474 33 QIPPTQLYIACAVLLLTTALLLLLQ--VFRRKKSTTIVLAGLSGSGKTVLFYQLRD----GSTHQGTVT--SMEP----- 99 (267)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~G~~~~GKSsLl~~l~~----~~~~~~~~~--~~~~----- 99 (267)
..+|....+......+..++..... .....+...|+++|..|+||||..-.|.. ......-+. ++.|
T Consensus 67 ~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 67 GLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 3456666677766666665542000 11134566799999999999998876632 111100000 0000
Q ss_pred ------c-cce-eEee----ccc--------CCCccccEEEEeCCCCCCchhhHH------hhhccCCEEEEEEeCCCCC
Q 024474 100 ------N-EDT-FVLH----SES--------TKGKIKPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFL 153 (267)
Q Consensus 100 ------~-~~~-~~~~----~~~--------~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~ 153 (267)
+ ... |... ... .....+.+.|+||+|-.......- .-.-+.|=+++|+|+.-+
T Consensus 147 L~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G- 225 (451)
T COG0541 147 LKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG- 225 (451)
T ss_pred HHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc-
Confidence 0 000 1100 000 012235799999999655433322 123467899999999887
Q ss_pred CchHHHHHHHHHHH
Q 024474 154 PNCSAASEYLYDIL 167 (267)
Q Consensus 154 ~~~~~~~~~l~~~~ 167 (267)
+........+.+-+
T Consensus 226 QdA~~~A~aF~e~l 239 (451)
T COG0541 226 QDAVNTAKAFNEAL 239 (451)
T ss_pred hHHHHHHHHHhhhc
Confidence 33445555555543
No 427
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00024 Score=60.87 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=35.8
Q ss_pred CccccEEEEeCCCCCCchh-hHHh-----hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHh
Q 024474 113 GKIKPVHLVDVPGHSRLRP-KLDE-----FLPQAAGIVFVVDALEFLPNCSAASEYLYDILT 168 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~ 168 (267)
.+++.+.|+||.|...... +.++ -.-..|-+|||+|++-+ ...+....-+.+...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-Qaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG-QAAEAQARAFKETVD 241 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc-HhHHHHHHHHHHhhc
Confidence 3457899999999543322 2222 12357999999999987 556666666665443
No 428
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.00031 Score=62.33 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=25.2
Q ss_pred cccEEEEeCCCCCCchhh-HH---h--hhccCCEEEEEEeCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK-LD---E--FLPQAAGIVFVVDALEF 152 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~-~~---~--~~~~~d~ii~v~d~~~~ 152 (267)
.+.+.++||||....... .. . ..-..|.+++|+|+..+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 367999999996543222 11 1 12357889999998764
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.50 E-value=0.0031 Score=44.87 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=57.8
Q ss_pred EcCCCCCHHHHHHHHHcCCcc----cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 70 AGLSGSGKTVLFYQLRDGSTH----QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 70 ~G~~~~GKSsLl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
-+..|+||||+...|...-.. +.......++.. ..+.++|||+... ......+..+|.+++
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-------------~D~IIiDtpp~~~--~~~~~~l~~aD~vlv 70 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-------------DDYVVVDLGRSLD--EVSLAALDQADRVFL 70 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-------------CCEEEEeCCCCcC--HHHHHHHHHcCeEEE
Confidence 345789999987766432211 111112222211 1689999998654 334457788999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
+++++.. +.......+..+.+... ....++.+|+|+
T Consensus 71 vv~~~~~--s~~~~~~~~~~l~~~~~--~~~~~~~lVvNr 106 (106)
T cd03111 71 VTQQDLP--SIRNAKRLLELLRVLDY--SLPAKIELVLNR 106 (106)
T ss_pred EecCChH--HHHHHHHHHHHHHHcCC--CCcCceEEEecC
Confidence 9998863 56666655555444211 113467788885
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=97.47 E-value=0.0016 Score=58.00 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
+...|+++|++|+||||++-.|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999766654
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.45 E-value=0.0021 Score=44.27 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=56.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-HHhhhccCCEEEE
Q 024474 67 IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGIVF 145 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~d~ii~ 145 (267)
+++.|..|+||||+...+...-...+... ... + .+.++|+++....... .......+|.+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v--------~~~-----~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~ 64 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRV--------LLI-----D----DYVLIDTPPGLGLLVLLCLLALLAADLVII 64 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeE--------EEE-----C----CEEEEeCCCCccchhhhhhhhhhhCCEEEE
Confidence 67889999999999988765321100000 000 1 6889999987643321 1456678999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
+++.... +.........+..... .....+..++.|
T Consensus 65 v~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~vv~N 99 (99)
T cd01983 65 VTTPEAL--AVLGARRLTEVVLELA--IEGLRPVGVVVN 99 (99)
T ss_pred ecCCchh--hHHHHHHHHHHHHHhh--ccCCceEEEEeC
Confidence 9998764 3444444322222211 124455566554
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0018 Score=54.05 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeeccc-------------cceeEeeccc-----------C-CCc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEPN-------------EDTFVLHSES-----------T-KGK 114 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~-----------~-~~~ 114 (267)
+..+++++|++|+||||++..+...-... ....+.++. ...+...... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 45799999999999999998875431110 011111110 0001111000 0 112
Q ss_pred cccEEEEeCCCCCCchhh----HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPK----LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||....... +..++ ...+-+++|+|++.. ...+...+..+.. . .+-=+++||.|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---~~d~~~~~~~f~~------~-~~~~~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---SKDMIEIITNFKD------I-HIDGIVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---HHHHHHHHHHhCC------C-CCCEEEEEeecC
Confidence 468999999997643222 22222 245678999998764 3334444433321 1 123588999997
Q ss_pred CCC
Q 024474 189 VTA 191 (267)
Q Consensus 189 ~~~ 191 (267)
...
T Consensus 224 t~~ 226 (270)
T PRK06731 224 TAS 226 (270)
T ss_pred CCC
Confidence 653
No 433
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00036 Score=68.41 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceee---eeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT---SMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~ 133 (267)
+=.+|+|++|+||||++..-- .+|+-.... .... .++..+.... . -.-.++||+|-.. -...|
T Consensus 126 PWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~-~gT~~cdwwf-~---deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAG-PGTRNCDWWF-T---DEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhccc-ccCcchhhhccccccC-CCCcccCccc-c---cceEEEcCCcceecccCcchhhHHHH
Confidence 447899999999999987432 122111110 0111 1111111111 1 2467999999321 12234
Q ss_pred Hhh---------hccCCEEEEEEeCCCCC-CchHH-------HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 134 DEF---------LPQAAGIVFVVDALEFL-PNCSA-------ASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 134 ~~~---------~~~~d~ii~v~d~~~~~-~~~~~-------~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
..+ .+-.++||+.+|+.+-. .+-.+ +...+.++... .....||.+++||.|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t---L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET---LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh---hccCCceEEEEecccccc
Confidence 332 24579999999986521 11111 22223333332 237899999999999875
No 434
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.44 E-value=0.0039 Score=54.53 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+-+.++||..+|||||+.++..
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHH
Confidence 4557899999999999999999843
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00038 Score=62.52 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998875
No 436
>PRK13695 putative NTPase; Provisional
Probab=97.37 E-value=0.0012 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998654
No 437
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0036 Score=54.97 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-------ccceeeeeccc-----------c--ceeEeecccC---------CCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST-------HQGTVTSMEPN-----------E--DTFVLHSEST---------KGK 114 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~-------~~~~~~~~~~~-----------~--~~~~~~~~~~---------~~~ 114 (267)
...++++|++|+||||.+..|...-. ..-...+.++. . ...++..... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45799999999999999988753210 00011111110 0 0011111000 113
Q ss_pred cccEEEEeCCCCCCchh----hHHhhhccC--C-EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRP----KLDEFLPQA--A-GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++||+|...... ....++... + -+++|+|++.. ...+.+.+..... --+-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---~~~~~~~~~~~~~-------~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---TSDVKEIFHQFSP-------FSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---HHHHHHHHHHhcC-------CCCCEEEEEecc
Confidence 46899999999764322 122333322 3 58899999875 3344444433321 112358899999
Q ss_pred CCCC
Q 024474 188 KVTA 191 (267)
Q Consensus 188 l~~~ 191 (267)
-...
T Consensus 324 et~~ 327 (388)
T PRK12723 324 ETTC 327 (388)
T ss_pred CCCc
Confidence 7543
No 438
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.36 E-value=0.0019 Score=45.53 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=49.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 67 IVLAG-LSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 67 i~i~G-~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
|++.| ..|+||||+...+...-...+. ...... .+.. +.+.++|+|+... ......+..+|.+++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~--------~vl~~d---~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv 67 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK--------RVLLID---LDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLI 67 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC--------cEEEEe---CCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEE
Confidence 55666 5799999998766542210000 001110 1111 5789999999654 334477788999999
Q ss_pred EEeCCCCCCchHHHHHHHH
Q 024474 146 VVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~ 164 (267)
+++.+.. ++......+.
T Consensus 68 ~~~~~~~--s~~~~~~~~~ 84 (104)
T cd02042 68 PVQPSPL--DLDGLEKLLE 84 (104)
T ss_pred eccCCHH--HHHHHHHHHH
Confidence 9988763 4555555544
No 439
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.00067 Score=57.33 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeec------------------cccceeEeec-------ccC-----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSME------------------PNEDTFVLHS-------EST----- 111 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~-------~~~----- 111 (267)
.+..-++++|-.|+||||-+-+|...-...+...-+. ..+..+.... +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4577899999999999999887743211111100000 0001111100 000
Q ss_pred -CCccccEEEEeCCCCCCchhh-------HHhhhccCC-----EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc
Q 024474 112 -KGKIKPVHLVDVPGHSRLRPK-------LDEFLPQAA-----GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP 178 (267)
Q Consensus 112 -~~~~~~~~l~DtpG~~~~~~~-------~~~~~~~~d-----~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p 178 (267)
...++.+.++||+|....... ..+.+...+ =+++++|++.+.+.+ ...+.+.+...-
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-~QAk~F~eav~l--------- 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-SQAKIFNEAVGL--------- 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-HHHHHHHHhcCC---------
Confidence 123478999999995533221 112333333 388888999884444 344445555432
Q ss_pred EEEEEecCCC
Q 024474 179 VLICCNKTDK 188 (267)
Q Consensus 179 vivv~nK~Dl 188 (267)
-=+++||+|-
T Consensus 287 ~GiIlTKlDg 296 (340)
T COG0552 287 DGIILTKLDG 296 (340)
T ss_pred ceEEEEeccc
Confidence 1478999994
No 440
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.26 E-value=0.0092 Score=46.31 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 117 PVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 117 ~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.++|||+... ......+..+|.+|++++++.. ++......+..+... ......+|+|+.|-..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~~~~~-----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEIS--SLRDADRVKGLLEAL-----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcc--hHHHHHHHHHHHHHc-----CCceEEEEEeCCcccc
Confidence 689999998654 2345567889999999998864 455555544433321 2235679999998653
No 441
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00029 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 442
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.20 E-value=0.00042 Score=53.89 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=28.7
Q ss_pred CEEEEEEeCCCCCCch-HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 141 AGIVFVVDALEFLPNC-SAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
|++++|+|+..+..+. ..+.+.+. +. ..+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~--l~-----~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL--QA-----GGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH--hc-----cCCCCEEEEEehhhcCCH
Confidence 7899999998752222 22222211 22 256899999999999643
No 443
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.011 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
....+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998753
No 444
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00038 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
No 445
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.03 E-value=0.00094 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+|.|+.|+||||++.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998753
No 446
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00058 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 447
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.00 E-value=0.00058 Score=51.12 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+++|+|||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 448
>PRK07261 topology modulation protein; Provisional
Probab=96.99 E-value=0.00064 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+|+|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.00071 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
.++--++++|++|||||||++.+.+-..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455799999999999999999987543
No 450
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.92 E-value=0.0012 Score=56.75 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.7
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
.|.......+..+|+||.|+|+.++.. ...++.+++.+. ..+...|+|+||+||.+.+..+.+..++.+...
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 355556677788999999999998632 333444444321 245889999999999988888888777776554
Q ss_pred HH
Q 024474 207 KL 208 (267)
Q Consensus 207 ~~ 208 (267)
.+
T Consensus 208 tv 209 (435)
T KOG2484|consen 208 TV 209 (435)
T ss_pred cc
Confidence 43
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.00087 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00085 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.|.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 356689999999999999999998864
No 453
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0027 Score=56.02 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=47.0
Q ss_pred ccccEEEEeCCCCCCchhh----HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 114 KIKPVHLVDVPGHSRLRPK----LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.++.+.++||+|...-... ...+ ....|.|++|-.+--+.++.+++..+-..+..... +..-=-++++|+|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~---~r~id~~~ltk~d 541 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHST---PRLIDGILLTKFD 541 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCC---ccccceEEEEecc
Confidence 4578999999996532222 1122 35689999998876665677777766555444321 1122357899999
Q ss_pred CCCC
Q 024474 188 KVTA 191 (267)
Q Consensus 188 l~~~ 191 (267)
-.++
T Consensus 542 tv~d 545 (587)
T KOG0781|consen 542 TVDD 545 (587)
T ss_pred chhh
Confidence 7643
No 454
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.85 E-value=0.00066 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 455
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.84 E-value=0.022 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.3
Q ss_pred HHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 56 LQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 56 ~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.....+..++++-|+.|+||||++..++..
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33444567789999999999999999998874
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.83 E-value=0.0013 Score=48.37 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGST 89 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~ 89 (267)
...++++|++|+|||+++..+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35799999999999999999987643
No 457
>PHA02518 ParA-like protein; Provisional
Probab=96.83 E-value=0.024 Score=45.34 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=41.6
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH---HHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA---SEYLYDILTNSTVVKKKIP-VLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl 188 (267)
.+.+.++||||.. .......+..+|.+|+++.++.. ++... ..++.+.... ..+.| ..++.|+.+-
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPF--DIWAAPDLVELIKARQEV----TDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChh--hHHHHHHHHHHHHHHHhh----CCCCceEEEEEeccCC
Confidence 3689999999964 45677788899999999998763 34333 3333332111 13344 4566677653
No 458
>PRK04195 replication factor C large subunit; Provisional
Probab=96.82 E-value=0.013 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+||||+++.+...
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999774
No 459
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.80 E-value=0.0022 Score=56.98 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=43.2
Q ss_pred hhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 135 EFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
+.+..+|+||.++|+.++.= ....+..+..++. ..+..++++||+||........+.+++.
T Consensus 170 RVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------~~K~~~LLvNKaDLl~~~qr~aWa~YF~ 231 (562)
T KOG1424|consen 170 RVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------PSKANVLLVNKADLLPPEQRVAWAEYFR 231 (562)
T ss_pred HHHhhcceEEEEeecCCccccCChhHHHHHhccc-------cccceEEEEehhhcCCHHHHHHHHHHHH
Confidence 46788999999999998621 1223444444432 4466899999999998877777776665
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0023 Score=50.87 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++||+|||||||+..+.+-+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 456689999999999999999987654
No 461
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.78 E-value=0.0023 Score=49.62 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
..+-.++|+|++|+|||||+|-+.+=..+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 45568999999999999999998875443
No 462
>PRK14530 adenylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.75 E-value=0.0042 Score=48.96 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+||||+++.|++.-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999988753
No 464
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.73 E-value=0.0027 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++--++|+|++|||||||+|.+-+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455579999999999999999887644
No 465
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.73 E-value=0.0042 Score=50.67 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..-++|.|++|+|||||++.|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56678999999999999999988764
No 466
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.73 E-value=0.0013 Score=52.85 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++..|+|+|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999763
No 467
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0023 Score=49.73 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++.-+++.||+|+||||+++.|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 45579999999999999999998865
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.68 E-value=0.0016 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.67 E-value=0.0025 Score=50.28 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++.-|+++|++|||||||+++|....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 44569999999999999999998753
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0017 Score=51.11 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++++|++|+|||||++.|.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999765
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.66 E-value=0.0019 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|+.|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5677899999999999999998863
No 472
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0019 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45567889999999999999999754
No 473
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.63 E-value=0.0017 Score=48.50 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 474
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.63 E-value=0.0018 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.002 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 476
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.62 E-value=0.0017 Score=47.64 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 024474 67 IVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 67 i~i~G~~~~GKSsLl~~l~~~ 87 (267)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998874
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0021 Score=50.27 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 466689999999999999999998853
No 478
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.61 E-value=0.0074 Score=51.87 Aligned_cols=73 Identities=29% Similarity=0.341 Sum_probs=47.6
Q ss_pred EEeCCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHH
Q 024474 120 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIR 198 (267)
Q Consensus 120 l~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 198 (267)
+-+.||+. ++.....+.+..+|+++-|+|+.++..+... .+.++. .+.|.++|+||+||.+....+.+.
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~---~l~~~v-------~~k~~i~vlNK~DL~~~~~~~~W~ 83 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP---ELERIV-------KEKPKLLVLNKADLAPKEVTKKWK 83 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc---cHHHHH-------ccCCcEEEEehhhcCCHHHHHHHH
Confidence 44457765 4455677888999999999999987433322 222332 445569999999998765544444
Q ss_pred HHHH
Q 024474 199 KQME 202 (267)
Q Consensus 199 ~~l~ 202 (267)
+.+.
T Consensus 84 ~~~~ 87 (322)
T COG1161 84 KYFK 87 (322)
T ss_pred HHHH
Confidence 4333
No 479
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0017 Score=48.39 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5678999999999999999999874
No 480
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.59 E-value=0.002 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+.|+|+|+.|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 481
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.58 E-value=0.037 Score=42.72 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=43.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.+.++|||+... ......+ ..+|.+++|..+.. .+.......+..+.+ .+.+ .-+|.|+.+-.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~------~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQE--VALDDVRKAIDMFKK------VNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCch--hhHHHHHHHHHHHHh------cCCCeEEEEEcCCccc
Confidence 357899999998643 2222333 57899999998876 356666666655554 2334 45789999853
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.58 E-value=0.0022 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..++++|++|||||||++.|....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 368999999999999999998753
No 483
>PRK06217 hypothetical protein; Validated
Probab=96.57 E-value=0.0021 Score=50.46 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 484
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.0023 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...|+|.|++|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999864
No 485
>PLN03025 replication factor C subunit; Provisional
Probab=96.56 E-value=0.027 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+.+.+++.|++|+||||++..+...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988764
No 486
>PRK03839 putative kinase; Provisional
Probab=96.55 E-value=0.0021 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+++|+||+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 487
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.55 E-value=0.0059 Score=51.09 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
....+++.|++||||||+++.++..-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cceEEEEECCCccccchHHHHHhhhc
Confidence 45689999999999999999998643
No 488
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.54 E-value=0.0025 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++--++++||.|||||||++.+.+-
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45567999999999999999999873
No 489
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0023 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++ .++++|++|+|||||++.+.+-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999875
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.53 E-value=0.0026 Score=51.35 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|+|||||++.+.+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466689999999999999999998854
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.53 E-value=0.0026 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 466689999999999999999998854
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.53 E-value=0.0023 Score=51.38 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.52 E-value=0.0027 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.+-.++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44579999999999999999986
No 494
>PRK13949 shikimate kinase; Provisional
Probab=96.51 E-value=0.0025 Score=49.46 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+++|++|+||||+...|..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 495
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.51 E-value=0.0027 Score=51.00 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998853
No 496
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.51 E-value=0.0024 Score=49.82 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=17.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......++|.|++|+|||+|++++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999987653
No 497
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.50 E-value=0.0028 Score=50.75 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998854
No 498
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.49 E-value=0.0029 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998753
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.49 E-value=0.0029 Score=50.58 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+++|++|||||||++.|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999875
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0029 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998854
Done!