Query 024474
Match_columns 267
No_of_seqs 344 out of 2986
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.4E-30 1.2E-34 207.3 14.7 161 62-265 11-174 (216)
2 2fh5_B SR-beta, signal recogni 100.0 3.4E-29 1.2E-33 201.3 17.5 199 61-265 4-214 (214)
3 1zj6_A ADP-ribosylation factor 100.0 4.2E-27 1.5E-31 185.1 18.9 164 61-266 13-177 (187)
4 1ek0_A Protein (GTP-binding pr 99.9 6.1E-28 2.1E-32 186.3 11.3 164 64-266 3-168 (170)
5 1fzq_A ADP-ribosylation factor 99.9 7.2E-27 2.5E-31 183.1 17.4 163 62-266 14-177 (181)
6 4bas_A ADP-ribosylation factor 99.9 2.5E-27 8.4E-32 188.0 14.9 167 61-265 14-187 (199)
7 1r8s_A ADP-ribosylation factor 99.9 2.3E-27 7.9E-32 182.3 14.2 160 65-266 1-161 (164)
8 1r2q_A RAS-related protein RAB 99.9 1.8E-27 6.1E-32 183.6 13.5 162 62-266 4-168 (170)
9 2b6h_A ADP-ribosylation factor 99.9 2.4E-27 8.1E-32 187.6 14.4 165 60-266 25-190 (192)
10 1upt_A ARL1, ADP-ribosylation 99.9 2.9E-27 9.9E-32 182.9 14.6 163 62-266 5-168 (171)
11 1f6b_A SAR1; gtpases, N-termin 99.9 3.1E-27 1.1E-31 187.8 15.1 175 62-266 23-198 (198)
12 1c1y_A RAS-related protein RAP 99.9 4E-27 1.4E-31 181.2 14.7 162 63-266 2-166 (167)
13 4dsu_A GTPase KRAS, isoform 2B 99.9 2.6E-27 9E-32 186.1 13.8 161 63-265 3-164 (189)
14 1zd9_A ADP-ribosylation factor 99.9 3.3E-27 1.1E-31 186.0 14.0 165 61-266 19-184 (188)
15 1m2o_B GTP-binding protein SAR 99.9 6.2E-27 2.1E-31 184.9 15.6 169 62-265 21-190 (190)
16 2efe_B Small GTP-binding prote 99.9 6.6E-27 2.3E-31 182.6 15.5 163 61-266 9-174 (181)
17 2h17_A ADP-ribosylation factor 99.9 8.5E-27 2.9E-31 182.5 15.9 163 61-265 18-181 (181)
18 2fg5_A RAB-22B, RAS-related pr 99.9 8E-27 2.7E-31 184.4 15.9 162 62-266 21-185 (192)
19 1ksh_A ARF-like protein 2; sma 99.9 5.8E-27 2E-31 184.0 14.7 162 62-265 16-178 (186)
20 1g16_A RAS-related protein SEC 99.9 2E-27 6.8E-32 183.5 11.8 161 63-265 2-163 (170)
21 2h57_A ADP-ribosylation factor 99.9 9.4E-27 3.2E-31 183.6 15.9 165 62-266 19-186 (190)
22 2hup_A RAS-related protein RAB 99.9 4.1E-27 1.4E-31 187.5 13.8 161 62-265 27-191 (201)
23 1z0j_A RAB-22, RAS-related pro 99.9 7.4E-27 2.5E-31 180.3 14.1 161 63-266 5-168 (170)
24 1z08_A RAS-related protein RAB 99.9 3.9E-27 1.3E-31 181.9 12.6 161 62-265 4-167 (170)
25 1u8z_A RAS-related protein RAL 99.9 8.8E-27 3E-31 179.3 13.9 160 63-265 3-165 (168)
26 3q72_A GTP-binding protein RAD 99.9 1.5E-26 5.1E-31 178.1 14.9 158 64-265 2-162 (166)
27 1moz_A ARL1, ADP-ribosylation 99.9 1.6E-26 5.4E-31 180.9 15.1 162 62-265 16-178 (183)
28 1kao_A RAP2A; GTP-binding prot 99.9 6.7E-27 2.3E-31 179.8 12.8 160 63-265 2-164 (167)
29 2ew1_A RAS-related protein RAB 99.9 6.6E-27 2.2E-31 186.4 13.1 161 62-265 24-187 (201)
30 1x3s_A RAS-related protein RAB 99.9 7.9E-27 2.7E-31 184.3 13.4 161 63-265 14-176 (195)
31 3cph_A RAS-related protein SEC 99.9 5.9E-27 2E-31 187.8 12.6 163 61-265 17-180 (213)
32 3tkl_A RAS-related protein RAB 99.9 7.2E-27 2.5E-31 184.8 12.8 161 62-265 14-177 (196)
33 3ihw_A Centg3; RAS, centaurin, 99.9 2.2E-26 7.6E-31 180.8 15.4 157 61-265 17-178 (184)
34 1nrj_B SR-beta, signal recogni 99.9 4.6E-26 1.6E-30 183.5 17.6 194 61-265 9-218 (218)
35 3kkq_A RAS-related protein M-R 99.9 1.3E-26 4.5E-31 181.4 14.0 162 61-265 15-180 (183)
36 2p5s_A RAS and EF-hand domain 99.9 9.1E-27 3.1E-31 185.1 13.1 163 61-266 25-196 (199)
37 2fn4_A P23, RAS-related protei 99.9 9.3E-27 3.2E-31 181.6 13.0 161 62-265 7-170 (181)
38 1z0f_A RAB14, member RAS oncog 99.9 8.7E-27 3E-31 181.4 12.7 161 62-265 13-176 (179)
39 1zbd_A Rabphilin-3A; G protein 99.9 2.5E-26 8.7E-31 182.9 15.6 160 63-265 7-169 (203)
40 2fu5_C RAS-related protein RAB 99.9 2.7E-27 9.3E-32 185.3 9.7 160 63-265 7-169 (183)
41 2nzj_A GTP-binding protein REM 99.9 2.6E-26 8.9E-31 178.2 15.1 162 63-265 3-167 (175)
42 2a5j_A RAS-related protein RAB 99.9 8.6E-27 2.9E-31 184.0 12.6 161 62-265 19-182 (191)
43 2y8e_A RAB-protein 6, GH09086P 99.9 9.2E-27 3.2E-31 181.2 12.6 161 63-266 13-176 (179)
44 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.1E-26 7.3E-31 179.1 14.6 165 62-265 5-172 (177)
45 2bov_A RAla, RAS-related prote 99.9 2.5E-26 8.7E-31 183.1 15.4 162 61-265 11-175 (206)
46 2bme_A RAB4A, RAS-related prot 99.9 1.3E-26 4.3E-31 181.9 13.3 161 62-265 8-171 (186)
47 2gf9_A RAS-related protein RAB 99.9 1.2E-26 4.1E-31 182.8 13.1 160 63-265 21-183 (189)
48 3tw8_B RAS-related protein RAB 99.9 3.9E-27 1.3E-31 183.7 10.2 160 62-265 7-169 (181)
49 2x77_A ADP-ribosylation factor 99.9 6.9E-27 2.4E-31 184.1 11.7 162 62-265 20-182 (189)
50 2oil_A CATX-8, RAS-related pro 99.9 1.9E-26 6.5E-31 182.2 14.1 161 62-265 23-186 (193)
51 1z06_A RAS-related protein RAB 99.9 1.1E-26 3.6E-31 183.1 12.5 163 62-266 18-187 (189)
52 3t5g_A GTP-binding protein RHE 99.9 1.2E-26 4.3E-31 181.2 12.6 160 63-265 5-167 (181)
53 2iwr_A Centaurin gamma 1; ANK 99.9 3.3E-26 1.1E-30 178.4 14.9 158 62-265 5-167 (178)
54 2a9k_A RAS-related protein RAL 99.9 2.3E-26 8E-31 180.2 14.1 161 62-265 16-179 (187)
55 1z2a_A RAS-related protein RAB 99.9 1E-26 3.4E-31 179.2 11.8 160 62-265 3-165 (168)
56 3t1o_A Gliding protein MGLA; G 99.9 2.2E-26 7.4E-31 182.0 14.0 163 62-265 12-190 (198)
57 3q85_A GTP-binding protein REM 99.9 2E-26 6.9E-31 177.9 13.4 160 64-265 2-165 (169)
58 2bcg_Y Protein YP2, GTP-bindin 99.9 1.9E-26 6.3E-31 184.2 13.6 161 62-265 6-169 (206)
59 3clv_A RAB5 protein, putative; 99.9 4.1E-26 1.4E-30 181.3 15.5 159 62-265 5-202 (208)
60 3reg_A RHO-like small GTPase; 99.9 4.8E-27 1.6E-31 185.9 9.9 164 61-265 20-186 (194)
61 2ce2_X GTPase HRAS; signaling 99.9 3.1E-26 1.1E-30 175.7 14.1 160 64-265 3-163 (166)
62 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-26 4.6E-31 183.1 12.4 162 62-265 24-188 (192)
63 1ky3_A GTP-binding protein YPT 99.9 2.5E-26 8.5E-31 179.3 13.7 166 61-265 5-176 (182)
64 2hxs_A RAB-26, RAS-related pro 99.9 8.6E-27 3E-31 181.5 10.9 165 61-266 3-172 (178)
65 3bc1_A RAS-related protein RAB 99.9 3.4E-26 1.2E-30 180.4 14.4 162 62-265 9-183 (195)
66 2g6b_A RAS-related protein RAB 99.9 2.8E-26 9.4E-31 178.9 13.5 161 62-265 8-172 (180)
67 3dz8_A RAS-related protein RAB 99.9 8.3E-27 2.8E-31 184.1 10.6 161 62-265 21-184 (191)
68 3oes_A GTPase rhebl1; small GT 99.9 1.1E-26 3.9E-31 184.9 11.3 162 61-265 21-185 (201)
69 4gzl_A RAS-related C3 botulinu 99.9 2.1E-26 7.1E-31 183.9 12.8 175 61-265 27-203 (204)
70 2q3h_A RAS homolog gene family 99.9 5.3E-26 1.8E-30 180.8 13.8 175 61-265 17-193 (201)
71 2atx_A Small GTP binding prote 99.9 7.3E-26 2.5E-30 179.0 14.5 173 63-265 17-191 (194)
72 3cbq_A GTP-binding protein REM 99.9 5.1E-26 1.7E-30 180.4 13.5 163 61-265 20-186 (195)
73 1vg8_A RAS-related protein RAB 99.9 4.6E-26 1.6E-30 181.8 13.2 166 61-265 5-173 (207)
74 2o52_A RAS-related protein RAB 99.9 1.9E-26 6.5E-31 183.5 10.5 161 62-265 23-186 (200)
75 3c5c_A RAS-like protein 12; GD 99.9 4.6E-26 1.6E-30 179.4 12.5 163 61-265 18-184 (187)
76 3bwd_D RAC-like GTP-binding pr 99.9 2.9E-26 1E-30 179.1 11.0 164 62-265 6-179 (182)
77 2erx_A GTP-binding protein DI- 99.9 6.7E-26 2.3E-30 175.1 12.9 164 63-266 2-166 (172)
78 2f7s_A C25KG, RAS-related prot 99.9 3.5E-26 1.2E-30 184.0 11.7 162 62-265 23-197 (217)
79 3cpj_B GTP-binding protein YPT 99.9 6.1E-26 2.1E-30 183.6 12.9 161 62-265 11-174 (223)
80 3con_A GTPase NRAS; structural 99.9 7.3E-26 2.5E-30 178.3 12.9 161 62-265 19-181 (190)
81 1m7b_A RND3/RHOE small GTP-bin 99.9 6.9E-26 2.4E-30 177.7 12.6 174 62-265 5-181 (184)
82 2j0v_A RAC-like GTP-binding pr 99.9 4.3E-26 1.5E-30 182.9 11.4 164 62-265 7-178 (212)
83 3q3j_B RHO-related GTP-binding 99.9 1.1E-25 3.7E-30 181.1 13.6 173 62-265 25-201 (214)
84 1mh1_A RAC1; GTP-binding, GTPa 99.9 7.6E-26 2.6E-30 177.2 12.1 173 63-265 4-178 (186)
85 2j1l_A RHO-related GTP-binding 99.9 1.1E-25 3.8E-30 181.0 13.2 174 62-265 32-207 (214)
86 2gf0_A GTP-binding protein DI- 99.9 9.5E-26 3.3E-30 178.8 12.6 164 61-266 5-170 (199)
87 2fv8_A H6, RHO-related GTP-bin 99.9 2E-25 6.8E-30 178.5 14.0 175 61-265 22-198 (207)
88 3gj0_A GTP-binding nuclear pro 99.9 1E-26 3.5E-31 187.8 6.4 161 61-265 12-173 (221)
89 2g3y_A GTP-binding protein GEM 99.9 3.2E-25 1.1E-29 177.8 14.6 165 62-265 35-201 (211)
90 2atv_A RERG, RAS-like estrogen 99.9 2.2E-25 7.6E-30 176.6 13.5 161 61-265 25-189 (196)
91 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-25 6.3E-30 177.9 12.8 174 62-265 23-198 (201)
92 2yc2_C IFT27, small RAB-relate 99.9 7.6E-26 2.6E-30 180.5 10.2 163 63-265 19-190 (208)
93 1gwn_A RHO-related GTP-binding 99.9 2E-25 6.9E-30 178.3 12.5 174 62-265 26-202 (205)
94 4djt_A GTP-binding nuclear pro 99.9 6.6E-26 2.2E-30 182.6 9.6 165 61-265 8-173 (218)
95 3o47_A ADP-ribosylation factor 99.9 3.2E-25 1.1E-29 189.4 13.4 162 63-266 164-326 (329)
96 3l0i_B RAS-related protein RAB 99.9 4.1E-27 1.4E-31 187.1 -0.0 163 63-266 32-195 (199)
97 3llu_A RAS-related GTP-binding 99.9 1.4E-24 4.6E-29 172.2 14.4 173 61-265 17-195 (196)
98 2lkc_A Translation initiation 99.9 2.3E-24 8E-29 167.6 14.7 164 61-265 5-169 (178)
99 3lvq_E ARF-GAP with SH3 domain 99.9 7.4E-25 2.5E-29 197.4 12.6 163 62-266 320-483 (497)
100 2cjw_A GTP-binding protein GEM 99.9 1.5E-24 5.3E-29 171.4 12.8 165 62-265 4-170 (192)
101 2zej_A Dardarin, leucine-rich 99.9 1.3E-25 4.4E-30 176.3 6.2 168 64-265 2-176 (184)
102 3gee_A MNME, tRNA modification 99.9 5.8E-25 2E-29 195.7 10.5 209 11-266 171-397 (476)
103 2wji_A Ferrous iron transport 99.9 8.2E-25 2.8E-29 168.7 9.9 153 64-266 3-164 (165)
104 1svi_A GTP-binding protein YSX 99.9 1.8E-24 6.3E-29 170.8 11.9 160 62-266 21-194 (195)
105 3th5_A RAS-related C3 botulinu 99.8 3.7E-26 1.3E-30 182.2 0.0 175 61-265 27-203 (204)
106 2qu8_A Putative nucleolar GTP- 99.9 3E-23 1E-27 168.3 16.3 164 62-265 27-203 (228)
107 2gj8_A MNME, tRNA modification 99.9 5.5E-24 1.9E-28 165.3 11.3 154 63-266 3-165 (172)
108 4dhe_A Probable GTP-binding pr 99.9 7.5E-24 2.6E-28 171.0 12.4 170 62-266 27-210 (223)
109 3pqc_A Probable GTP-binding pr 99.9 1.5E-23 5E-28 165.4 13.6 159 62-266 21-193 (195)
110 3iev_A GTP-binding protein ERA 99.9 1.8E-23 6E-28 177.1 13.1 163 61-266 7-181 (308)
111 2dyk_A GTP-binding protein; GT 99.9 5.7E-24 1.9E-28 162.6 9.2 152 65-266 2-161 (161)
112 1xzp_A Probable tRNA modificat 99.9 2E-23 6.7E-28 186.0 13.9 204 10-265 182-403 (482)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 2.6E-23 8.7E-28 175.1 13.3 168 66-267 1-174 (331)
114 3r7w_A Gtpase1, GTP-binding pr 99.9 5.1E-23 1.8E-27 174.2 14.3 168 63-265 2-179 (307)
115 2wkq_A NPH1-1, RAS-related C3 99.9 2.9E-23 9.9E-28 177.3 12.5 175 61-265 152-328 (332)
116 3geh_A MNME, tRNA modification 99.9 4.4E-24 1.5E-28 189.4 7.2 203 11-265 163-382 (462)
117 2wjg_A FEOB, ferrous iron tran 99.9 1.9E-23 6.7E-28 164.0 9.8 154 63-266 6-168 (188)
118 3iby_A Ferrous iron transport 99.9 2E-23 6.9E-28 172.1 10.0 150 65-264 2-164 (256)
119 1wf3_A GTP-binding protein; GT 99.9 1.5E-22 5.2E-27 170.6 14.1 158 63-266 6-172 (301)
120 3a1s_A Iron(II) transport prot 99.9 3.8E-23 1.3E-27 170.7 10.2 153 63-265 4-165 (258)
121 3b1v_A Ferrous iron uptake tra 99.9 3.9E-23 1.3E-27 171.7 10.2 151 64-265 3-162 (272)
122 3i8s_A Ferrous iron transport 99.9 2.7E-23 9.1E-28 173.2 9.2 154 63-266 2-168 (274)
123 3c5h_A Glucocorticoid receptor 99.9 1.3E-23 4.5E-28 173.4 7.2 165 62-265 17-253 (255)
124 2f9l_A RAB11B, member RAS onco 99.9 2.6E-22 8.8E-27 159.4 13.5 159 64-265 5-166 (199)
125 2ged_A SR-beta, signal recogni 99.9 1.8E-22 6.1E-27 159.2 11.8 139 62-210 46-190 (193)
126 3sjy_A Translation initiation 99.9 3.1E-22 1E-26 175.6 13.2 172 61-267 5-192 (403)
127 1oix_A RAS-related protein RAB 99.9 7.5E-22 2.6E-26 155.8 13.1 159 64-265 29-190 (191)
128 2e87_A Hypothetical protein PH 99.9 2.1E-21 7.2E-26 167.7 16.3 159 62-265 165-334 (357)
129 2cxx_A Probable GTP-binding pr 99.9 2.7E-22 9.4E-27 157.5 9.4 159 65-265 2-182 (190)
130 3dpu_A RAB family protein; roc 99.9 1.3E-21 4.5E-26 177.5 14.6 163 61-265 38-206 (535)
131 3k53_A Ferrous iron transport 99.9 3.4E-22 1.2E-26 166.3 9.6 154 63-265 2-164 (271)
132 2hjg_A GTP-binding protein ENG 99.9 9.1E-22 3.1E-26 174.3 10.3 159 63-264 174-346 (436)
133 3j2k_7 ERF3, eukaryotic polype 99.9 1.2E-20 4E-25 167.0 15.8 168 62-257 15-215 (439)
134 4dcu_A GTP-binding protein ENG 99.8 1.6E-21 5.4E-26 173.7 9.6 161 62-265 193-367 (456)
135 1mky_A Probable GTP-binding pr 99.8 1.9E-21 6.4E-26 172.4 9.9 153 65-265 2-164 (439)
136 3cb4_D GTP-binding protein LEP 99.8 8.7E-21 3E-25 172.7 14.4 164 63-267 3-182 (599)
137 2hjg_A GTP-binding protein ENG 99.8 2.8E-21 9.7E-26 171.1 10.4 152 65-266 4-164 (436)
138 3t5d_A Septin-7; GTP-binding p 99.8 5.7E-21 1.9E-25 159.2 11.6 165 62-266 6-203 (274)
139 2ywe_A GTP-binding protein LEP 99.8 1.2E-20 4.2E-25 171.4 14.7 164 63-267 5-184 (600)
140 1g7s_A Translation initiation 99.8 9E-21 3.1E-25 172.7 13.6 186 62-265 3-216 (594)
141 1s0u_A EIF-2-gamma, translatio 99.8 8E-21 2.7E-25 166.8 12.7 171 61-266 5-197 (408)
142 3izy_P Translation initiation 99.8 2.3E-22 8E-27 180.5 2.1 163 63-265 3-166 (537)
143 3tr5_A RF-3, peptide chain rel 99.8 1.2E-20 4.2E-25 169.9 12.9 122 63-192 12-150 (528)
144 1wb1_A Translation elongation 99.8 5.1E-21 1.7E-25 171.1 10.2 165 63-265 18-187 (482)
145 3qq5_A Small GTP-binding prote 99.8 2.1E-21 7E-26 170.2 6.9 156 62-266 32-195 (423)
146 1kk1_A EIF2gamma; initiation o 99.8 7.6E-21 2.6E-25 167.1 10.5 171 61-266 7-199 (410)
147 2xtp_A GTPase IMAP family memb 99.8 9E-21 3.1E-25 156.7 9.6 167 62-265 20-206 (260)
148 1ega_A Protein (GTP-binding pr 99.8 2.6E-20 8.7E-25 157.1 12.5 157 63-266 7-174 (301)
149 2c78_A Elongation factor TU-A; 99.8 8.3E-21 2.8E-25 166.6 9.3 171 61-266 8-211 (405)
150 3p26_A Elongation factor 1 alp 99.8 2.7E-20 9.3E-25 166.8 12.1 165 61-256 30-227 (483)
151 3lxw_A GTPase IMAP family memb 99.8 2.5E-20 8.6E-25 152.9 10.2 124 62-191 19-154 (247)
152 1zo1_I IF2, translation initia 99.8 1.3E-20 4.5E-25 167.8 9.1 162 62-264 2-164 (501)
153 1d2e_A Elongation factor TU (E 99.8 1.8E-20 6.2E-25 164.0 9.7 170 63-267 2-195 (397)
154 1lnz_A SPO0B-associated GTP-bi 99.8 2E-20 6.8E-25 159.9 9.2 161 65-266 159-329 (342)
155 2elf_A Protein translation elo 99.8 2.7E-20 9.2E-25 161.0 9.0 149 66-266 23-179 (370)
156 2qtf_A Protein HFLX, GTP-bindi 99.8 3.4E-19 1.2E-23 153.7 15.2 165 63-265 177-352 (364)
157 1jny_A EF-1-alpha, elongation 99.8 8.4E-20 2.9E-24 161.5 11.6 168 62-264 4-222 (435)
158 1zun_B Sulfate adenylate trans 99.8 8.1E-20 2.8E-24 161.6 11.4 122 62-191 22-172 (434)
159 1mky_A Probable GTP-binding pr 99.8 9.1E-20 3.1E-24 161.6 11.3 159 63-264 179-352 (439)
160 4dcu_A GTP-binding protein ENG 99.8 6.6E-20 2.3E-24 163.2 10.4 154 62-265 21-183 (456)
161 1f60_A Elongation factor EEF1A 99.8 6.4E-20 2.2E-24 163.1 9.5 121 62-190 5-159 (458)
162 3izq_1 HBS1P, elongation facto 99.8 2.5E-19 8.5E-24 164.1 11.9 163 62-257 165-362 (611)
163 3lxx_A GTPase IMAP family memb 99.8 1.6E-19 5.3E-24 147.4 9.3 128 61-195 26-164 (239)
164 3mca_A HBS1, elongation factor 99.8 2.3E-20 7.7E-25 170.5 3.7 176 62-267 175-397 (592)
165 1r5b_A Eukaryotic peptide chai 99.8 4.4E-19 1.5E-23 158.1 11.5 124 62-191 41-196 (467)
166 2j69_A Bacterial dynamin-like 99.8 2.2E-18 7.6E-23 160.2 16.6 69 116-191 174-245 (695)
167 2h5e_A Peptide chain release f 99.8 1.3E-18 4.3E-23 156.9 14.3 132 63-203 12-160 (529)
168 3avx_A Elongation factor TS, e 99.8 2.4E-19 8.2E-24 170.7 9.4 171 61-266 293-485 (1289)
169 2aka_B Dynamin-1; fusion prote 99.8 1.2E-18 4E-23 146.7 12.3 164 62-264 24-250 (299)
170 2qag_A Septin-2, protein NEDD5 99.8 8E-19 2.8E-23 151.5 7.8 165 61-266 34-236 (361)
171 1pui_A ENGB, probable GTP-bind 99.8 3.2E-18 1.1E-22 136.5 10.2 161 61-265 23-197 (210)
172 2dy1_A Elongation factor G; tr 99.8 1.1E-17 3.8E-22 154.9 15.3 134 62-205 7-153 (665)
173 1cip_A Protein (guanine nucleo 99.7 2.8E-18 9.5E-23 147.1 9.8 124 115-265 192-342 (353)
174 3p32_A Probable GTPase RV1496/ 99.7 2.6E-18 9E-23 148.1 9.5 197 21-265 44-282 (355)
175 2www_A Methylmalonic aciduria 99.7 3.8E-18 1.3E-22 146.6 10.2 204 20-265 28-277 (349)
176 1dar_A EF-G, elongation factor 99.7 2E-17 6.9E-22 153.7 15.0 132 62-202 10-154 (691)
177 2rdo_7 EF-G, elongation factor 99.7 4.9E-17 1.7E-21 151.3 17.3 135 62-205 8-162 (704)
178 3def_A T7I23.11 protein; chlor 99.7 4.3E-17 1.5E-21 134.8 14.0 132 62-200 34-177 (262)
179 1jwy_B Dynamin A GTPase domain 99.7 3.3E-17 1.1E-21 139.0 13.2 71 116-192 131-214 (315)
180 3ohm_A Guanine nucleotide-bind 99.7 7.4E-18 2.5E-22 142.5 9.0 121 115-264 166-315 (327)
181 3vqt_A RF-3, peptide chain rel 99.7 7.7E-17 2.6E-21 145.9 15.2 132 63-204 30-179 (548)
182 2xex_A Elongation factor G; GT 99.7 5.7E-17 2E-21 150.7 13.7 133 62-203 8-153 (693)
183 1h65_A Chloroplast outer envel 99.7 1.8E-16 6.2E-21 131.6 13.0 138 62-206 37-186 (270)
184 2p67_A LAO/AO transport system 99.7 5.2E-17 1.8E-21 139.2 9.2 200 18-265 18-259 (341)
185 1udx_A The GTP-binding protein 99.7 4.3E-16 1.5E-20 136.1 13.8 159 64-265 157-323 (416)
186 4fid_A G protein alpha subunit 99.7 1.5E-16 5.2E-21 135.0 10.3 73 114-189 159-241 (340)
187 1n0u_A EF-2, elongation factor 99.7 5.8E-16 2E-20 146.7 14.3 144 62-213 17-190 (842)
188 3t34_A Dynamin-related protein 99.7 1.3E-16 4.6E-21 137.7 9.0 124 63-192 33-219 (360)
189 1wxq_A GTP-binding protein; st 99.7 5.1E-17 1.7E-21 141.6 5.6 88 65-152 1-114 (397)
190 2x2e_A Dynamin-1; nitration, h 99.6 1.9E-16 6.4E-21 136.5 8.1 164 62-263 29-254 (353)
191 2wsm_A Hydrogenase expression/ 99.6 4.5E-16 1.6E-20 125.1 8.9 155 62-265 28-212 (221)
192 2qpt_A EH domain-containing pr 99.6 1.3E-15 4.4E-20 138.0 12.4 121 63-191 64-233 (550)
193 3j25_A Tetracycline resistance 99.6 3E-16 1E-20 144.7 8.0 122 64-193 2-136 (638)
194 2qnr_A Septin-2, protein NEDD5 99.6 3.6E-16 1.2E-20 131.7 7.7 162 62-264 16-211 (301)
195 4fn5_A EF-G 1, elongation fact 99.6 1.6E-14 5.5E-19 134.8 18.1 122 63-192 12-153 (709)
196 2qag_C Septin-7; cell cycle, c 99.6 1.9E-15 6.6E-20 132.1 9.3 135 62-206 29-197 (418)
197 1yrb_A ATP(GTP)binding protein 99.6 2E-15 6.7E-20 124.5 7.1 134 116-265 109-255 (262)
198 1zcb_A G alpha I/13; GTP-bindi 99.6 2.8E-15 9.7E-20 128.9 7.1 122 115-265 200-351 (362)
199 3l82_B F-box only protein 4; T 99.6 1.2E-14 4E-19 113.7 9.5 108 124-266 110-222 (227)
200 1jal_A YCHF protein; nucleotid 99.6 4E-14 1.4E-18 121.2 13.4 88 64-151 2-108 (363)
201 1azs_C GS-alpha; complex (lyas 99.5 5.8E-15 2E-19 128.0 6.9 72 115-189 216-297 (402)
202 2xtz_A Guanine nucleotide-bind 99.5 1.3E-14 4.5E-19 124.3 9.1 73 114-189 181-263 (354)
203 3zvr_A Dynamin-1; hydrolase, D 99.5 3.8E-14 1.3E-18 131.4 12.3 164 62-263 49-274 (772)
204 2qm8_A GTPase/ATPase; G protei 99.5 7.1E-14 2.4E-18 119.4 12.0 201 14-265 13-259 (337)
205 4a9a_A Ribosome-interacting GT 99.5 1E-13 3.6E-18 119.2 11.0 116 65-189 73-195 (376)
206 1u0l_A Probable GTPase ENGC; p 99.5 8.7E-14 3E-18 117.1 9.2 137 79-264 32-170 (301)
207 2hf9_A Probable hydrogenase ni 99.5 3.5E-13 1.2E-17 108.5 11.3 156 61-265 35-222 (226)
208 2dby_A GTP-binding protein; GD 99.4 2.4E-13 8.1E-18 117.0 9.6 87 65-151 2-111 (368)
209 3l2o_B F-box only protein 4; s 99.4 1.9E-13 6.6E-18 111.9 8.4 109 123-266 194-307 (312)
210 2ohf_A Protein OLA1, GTP-bindi 99.2 7.8E-12 2.7E-16 108.0 6.6 92 61-152 19-129 (396)
211 2qag_B Septin-6, protein NEDD5 99.2 3E-11 1E-15 105.3 8.8 118 65-191 43-191 (427)
212 2yv5_A YJEQ protein; hydrolase 99.1 9E-11 3.1E-15 98.6 6.1 113 113-264 47-166 (302)
213 2j37_W Signal recognition part 99.1 4.2E-09 1.4E-13 94.0 15.3 115 63-191 100-255 (504)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 7.7E-10 2.6E-14 95.5 8.9 130 63-205 161-303 (369)
215 3h2y_A GTPase family protein; 99.0 3.2E-10 1.1E-14 97.8 5.4 131 63-206 159-303 (368)
216 3sop_A Neuronal-specific septi 99.0 3.1E-09 1.1E-13 87.8 10.8 135 65-207 3-171 (270)
217 1tq4_A IIGP1, interferon-induc 99.0 2.6E-08 8.7E-13 86.8 16.2 164 63-266 68-252 (413)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 7.3E-09 2.5E-13 89.7 8.8 91 61-151 17-127 (392)
219 1puj_A YLQF, conserved hypothe 98.7 1.5E-08 5.1E-13 84.2 5.9 62 61-129 117-178 (282)
220 1puj_A YLQF, conserved hypothe 98.7 2.9E-08 9.9E-13 82.4 7.0 99 120-265 3-104 (282)
221 3h2y_A GTPase family protein; 98.7 3.3E-08 1.1E-12 85.3 6.9 101 125-264 55-157 (368)
222 3ec1_A YQEH GTPase; atnos1, at 98.6 5E-08 1.7E-12 84.1 7.1 102 125-265 57-160 (369)
223 2v3c_C SRP54, signal recogniti 98.5 2E-07 6.9E-12 81.8 6.9 115 64-190 99-252 (432)
224 3dm5_A SRP54, signal recogniti 98.5 1E-06 3.6E-11 77.1 11.2 65 116-190 183-253 (443)
225 3cnl_A YLQF, putative uncharac 98.4 9.5E-08 3.3E-12 78.4 3.7 58 65-129 100-157 (262)
226 1f5n_A Interferon-induced guan 98.4 4E-07 1.4E-11 82.6 6.4 69 61-129 35-104 (592)
227 3szr_A Interferon-induced GTP- 98.3 2E-06 6.9E-11 78.8 9.4 28 63-90 44-71 (608)
228 3kl4_A SRP54, signal recogniti 98.2 3.7E-06 1.3E-10 73.6 8.7 65 115-189 179-251 (433)
229 1j8m_F SRP54, signal recogniti 98.1 9E-06 3.1E-10 67.9 8.7 65 114-189 179-252 (297)
230 3cnl_A YLQF, putative uncharac 98.1 8.6E-07 3E-11 72.7 2.3 93 123-264 4-98 (262)
231 2xxa_A Signal recognition part 98.0 3.2E-05 1.1E-09 67.9 9.3 65 115-190 183-254 (433)
232 1t9h_A YLOQ, probable GTPase E 98.0 6.8E-06 2.3E-10 68.7 4.8 53 133-191 80-132 (307)
233 3e70_C DPA, signal recognition 97.8 5E-05 1.7E-09 64.2 8.3 25 62-86 127-151 (328)
234 2yhs_A FTSY, cell division pro 97.8 7E-05 2.4E-09 66.3 8.5 24 63-86 292-315 (503)
235 1rj9_A FTSY, signal recognitio 97.8 0.00024 8.4E-09 59.3 11.0 24 63-86 101-124 (304)
236 3q5d_A Atlastin-1; G protein, 97.7 3.5E-05 1.2E-09 67.7 5.4 26 62-87 65-90 (447)
237 1bif_A 6-phosphofructo-2-kinas 97.6 1.3E-05 4.3E-10 71.3 0.4 97 62-164 37-143 (469)
238 4dzz_A Plasmid partitioning pr 97.5 0.00048 1.6E-08 53.6 9.4 69 115-189 75-143 (206)
239 1zu4_A FTSY; GTPase, signal re 97.5 0.00015 5.3E-09 61.0 6.7 24 63-86 104-127 (320)
240 1vma_A Cell division protein F 97.5 0.00047 1.6E-08 57.6 9.5 23 64-86 104-126 (306)
241 2px0_A Flagellar biosynthesis 97.5 0.00013 4.5E-09 60.7 5.9 24 63-86 104-127 (296)
242 2rcn_A Probable GTPase ENGC; Y 97.5 0.00019 6.5E-09 61.2 6.5 87 136-262 127-214 (358)
243 1nij_A Hypothetical protein YJ 97.4 0.0012 4E-08 55.5 10.8 24 64-87 4-27 (318)
244 1t9h_A YLOQ, probable GTPase E 97.4 5E-05 1.7E-09 63.5 1.8 26 63-88 172-197 (307)
245 2rcn_A Probable GTPase ENGC; Y 97.3 9.3E-05 3.2E-09 63.1 2.8 26 63-88 214-239 (358)
246 2yv5_A YJEQ protein; hydrolase 97.3 0.00035 1.2E-08 58.3 6.1 25 63-88 164-188 (302)
247 2ffh_A Protein (FFH); SRP54, s 97.2 0.0014 4.7E-08 57.3 9.0 65 115-189 180-250 (425)
248 3cwq_A Para family chromosome 97.2 0.0024 8E-08 50.2 9.7 67 115-190 67-134 (209)
249 1lvg_A Guanylate kinase, GMP k 97.2 0.00018 6.2E-09 56.2 3.0 23 64-86 4-26 (198)
250 1ye8_A Protein THEP1, hypothet 97.2 0.00022 7.4E-09 54.8 3.3 22 66-87 2-23 (178)
251 1kgd_A CASK, peripheral plasma 97.2 0.00024 8.3E-09 54.5 3.6 25 63-87 4-28 (180)
252 1u0l_A Probable GTPase ENGC; p 97.1 0.00042 1.4E-08 57.8 4.9 26 63-88 168-193 (301)
253 1zp6_A Hypothetical protein AT 97.0 0.00038 1.3E-08 53.6 3.4 26 62-87 7-32 (191)
254 3tr0_A Guanylate kinase, GMP k 97.0 0.00044 1.5E-08 53.9 3.7 25 63-87 6-30 (205)
255 3k9g_A PF-32 protein; ssgcid, 97.0 0.0058 2E-07 49.6 10.2 65 115-187 144-208 (267)
256 3ney_A 55 kDa erythrocyte memb 97.0 0.0005 1.7E-08 53.6 3.5 26 62-87 17-42 (197)
257 1s96_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 54.5 3.6 27 62-88 14-40 (219)
258 3c8u_A Fructokinase; YP_612366 96.9 0.00042 1.4E-08 54.4 2.9 26 62-87 20-45 (208)
259 3la6_A Tyrosine-protein kinase 96.9 0.084 2.9E-06 43.4 16.9 66 116-189 202-267 (286)
260 1z6g_A Guanylate kinase; struc 96.9 0.0005 1.7E-08 54.5 3.2 27 62-88 21-47 (218)
261 3bfv_A CAPA1, CAPB2, membrane 96.9 0.029 1E-06 45.8 13.9 65 116-189 192-257 (271)
262 1znw_A Guanylate kinase, GMP k 96.9 0.00059 2E-08 53.5 3.5 26 62-87 18-43 (207)
263 3tau_A Guanylate kinase, GMP k 96.9 0.00062 2.1E-08 53.4 3.7 27 62-88 6-32 (208)
264 1ex7_A Guanylate kinase; subst 96.9 0.00062 2.1E-08 52.6 3.5 22 66-87 3-24 (186)
265 3end_A Light-independent proto 96.9 0.0076 2.6E-07 50.1 10.4 69 115-188 156-225 (307)
266 3a00_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 52.9 2.9 22 66-87 3-24 (186)
267 2j41_A Guanylate kinase; GMP, 96.8 0.00073 2.5E-08 52.6 3.6 26 63-88 5-30 (207)
268 4eun_A Thermoresistant glucoki 96.8 0.00088 3E-08 52.2 3.6 25 62-86 27-51 (200)
269 2qor_A Guanylate kinase; phosp 96.8 0.00076 2.6E-08 52.7 3.2 26 62-87 10-35 (204)
270 3ec2_A DNA replication protein 96.8 0.0012 4.2E-08 50.3 4.3 26 62-87 36-61 (180)
271 2bbw_A Adenylate kinase 4, AK4 96.8 0.00095 3.2E-08 53.8 3.8 23 63-85 26-48 (246)
272 3asz_A Uridine kinase; cytidin 96.7 0.00077 2.6E-08 52.8 3.1 26 62-87 4-29 (211)
273 1kag_A SKI, shikimate kinase I 96.7 0.00079 2.7E-08 50.9 3.1 23 65-87 5-27 (173)
274 3tif_A Uncharacterized ABC tra 96.7 0.00093 3.2E-08 53.6 3.6 27 62-88 29-55 (235)
275 4gp7_A Metallophosphoesterase; 96.7 0.00069 2.4E-08 51.4 2.5 24 63-86 8-31 (171)
276 3kb2_A SPBC2 prophage-derived 96.7 0.00097 3.3E-08 50.2 3.2 22 65-86 2-23 (173)
277 1htw_A HI0065; nucleotide-bind 96.7 0.001 3.6E-08 49.9 3.2 27 62-88 31-57 (158)
278 1knq_A Gluconate kinase; ALFA/ 96.7 0.001 3.5E-08 50.5 3.2 24 63-86 7-30 (175)
279 2pcj_A ABC transporter, lipopr 96.7 0.001 3.5E-08 53.0 3.2 27 62-88 28-54 (224)
280 2v9p_A Replication protein E1; 96.6 0.0012 4E-08 55.1 3.6 27 60-86 122-148 (305)
281 2cbz_A Multidrug resistance-as 96.6 0.0012 4.1E-08 53.0 3.6 27 62-88 29-55 (237)
282 3vaa_A Shikimate kinase, SK; s 96.6 0.0012 4.3E-08 51.2 3.6 25 62-86 23-47 (199)
283 2chg_A Replication factor C sm 96.6 0.0049 1.7E-07 48.0 7.0 24 64-87 38-61 (226)
284 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.4E-08 51.2 3.4 24 63-86 17-40 (202)
285 2bdt_A BH3686; alpha-beta prot 96.6 0.0011 3.8E-08 51.0 2.9 21 66-86 4-24 (189)
286 3lw7_A Adenylate kinase relate 96.6 0.0013 4.5E-08 49.4 3.3 20 65-84 2-21 (179)
287 1b0u_A Histidine permease; ABC 96.6 0.0014 4.8E-08 53.5 3.6 27 62-88 30-56 (262)
288 2onk_A Molybdate/tungstate ABC 96.6 0.0012 4.2E-08 53.1 3.2 24 65-88 25-48 (240)
289 2pze_A Cystic fibrosis transme 96.6 0.0013 4.5E-08 52.5 3.3 27 62-88 32-58 (229)
290 3cio_A ETK, tyrosine-protein k 96.6 0.091 3.1E-06 43.5 14.6 65 116-189 214-279 (299)
291 3uie_A Adenylyl-sulfate kinase 96.5 0.0018 6.2E-08 50.3 4.0 27 61-87 22-48 (200)
292 3gfo_A Cobalt import ATP-bindi 96.5 0.0013 4.5E-08 54.0 3.3 27 62-88 32-58 (275)
293 1sgw_A Putative ABC transporte 96.5 0.0012 4.1E-08 52.2 2.9 26 63-88 34-59 (214)
294 2olj_A Amino acid ABC transpor 96.5 0.0015 5.3E-08 53.2 3.6 27 62-88 48-74 (263)
295 1mv5_A LMRA, multidrug resista 96.5 0.0013 4.6E-08 52.9 3.3 27 62-88 26-52 (243)
296 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.6E-08 49.9 3.6 26 62-87 8-33 (184)
297 2if2_A Dephospho-COA kinase; a 96.5 0.0015 5.1E-08 50.8 3.4 22 65-86 2-23 (204)
298 2ghi_A Transport protein; mult 96.5 0.0016 5.4E-08 53.1 3.6 27 62-88 44-70 (260)
299 2ff7_A Alpha-hemolysin translo 96.5 0.0014 4.7E-08 53.0 3.2 27 62-88 33-59 (247)
300 4g1u_C Hemin import ATP-bindin 96.5 0.0014 4.8E-08 53.6 3.2 27 62-88 35-61 (266)
301 1g6h_A High-affinity branched- 96.5 0.0014 4.8E-08 53.3 3.2 27 62-88 31-57 (257)
302 1vpl_A ABC transporter, ATP-bi 96.5 0.0017 5.8E-08 52.8 3.6 27 62-88 39-65 (256)
303 2i3b_A HCR-ntpase, human cance 96.5 0.0014 4.9E-08 50.7 3.0 22 66-87 3-24 (189)
304 2zu0_C Probable ATP-dependent 96.5 0.0018 6.3E-08 52.9 3.9 26 62-87 44-69 (267)
305 2eyu_A Twitching motility prot 96.5 0.0015 5.2E-08 53.2 3.3 26 62-87 23-48 (261)
306 2qi9_C Vitamin B12 import ATP- 96.5 0.0015 5.3E-08 52.8 3.3 27 62-88 24-50 (249)
307 1ly1_A Polynucleotide kinase; 96.5 0.0016 5.3E-08 49.4 3.1 21 66-86 4-24 (181)
308 2ixe_A Antigen peptide transpo 96.5 0.0017 6E-08 53.2 3.6 27 62-88 43-69 (271)
309 1cke_A CK, MSSA, protein (cyti 96.5 0.0019 6.5E-08 51.1 3.7 23 64-86 5-27 (227)
310 1kht_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 49.5 3.5 23 64-86 3-25 (192)
311 1ji0_A ABC transporter; ATP bi 96.5 0.0016 5.3E-08 52.4 3.2 27 62-88 30-56 (240)
312 1np6_A Molybdopterin-guanine d 96.5 0.002 6.7E-08 49.2 3.6 24 64-87 6-29 (174)
313 3lnc_A Guanylate kinase, GMP k 96.5 0.0011 3.6E-08 52.9 2.1 26 62-87 25-51 (231)
314 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0018 6E-08 52.5 3.4 26 62-87 27-52 (250)
315 1aky_A Adenylate kinase; ATP:A 96.5 0.002 6.9E-08 50.8 3.7 24 63-86 3-26 (220)
316 1qhx_A CPT, protein (chloramph 96.4 0.002 6.9E-08 48.8 3.6 23 65-87 4-26 (178)
317 3aez_A Pantothenate kinase; tr 96.4 0.0017 5.7E-08 54.4 3.3 26 61-86 87-112 (312)
318 2yvu_A Probable adenylyl-sulfa 96.4 0.0017 5.8E-08 49.8 3.1 26 61-86 10-35 (186)
319 2rhm_A Putative kinase; P-loop 96.4 0.0019 6.4E-08 49.6 3.4 24 63-86 4-27 (193)
320 2ihy_A ABC transporter, ATP-bi 96.4 0.0017 5.8E-08 53.5 3.3 27 62-88 45-71 (279)
321 3cm0_A Adenylate kinase; ATP-b 96.4 0.0017 5.7E-08 49.7 3.0 24 63-86 3-26 (186)
322 1nks_A Adenylate kinase; therm 96.4 0.0017 5.9E-08 49.7 3.1 21 66-86 3-23 (194)
323 3b85_A Phosphate starvation-in 96.4 0.0014 4.7E-08 51.6 2.6 25 63-87 21-45 (208)
324 2yz2_A Putative ABC transporte 96.4 0.002 6.9E-08 52.6 3.6 27 62-88 31-57 (266)
325 1jbk_A CLPB protein; beta barr 96.4 0.0047 1.6E-07 46.8 5.5 26 62-87 41-66 (195)
326 2v54_A DTMP kinase, thymidylat 96.4 0.0024 8.3E-08 49.5 3.8 25 63-87 3-27 (204)
327 2qt1_A Nicotinamide riboside k 96.4 0.0021 7.2E-08 50.2 3.4 26 62-87 19-44 (207)
328 2nq2_C Hypothetical ABC transp 96.4 0.0019 6.5E-08 52.4 3.2 27 62-88 29-55 (253)
329 3trf_A Shikimate kinase, SK; a 96.4 0.0023 7.8E-08 48.9 3.5 23 64-86 5-27 (185)
330 2jeo_A Uridine-cytidine kinase 96.4 0.002 6.8E-08 51.9 3.3 25 62-86 23-47 (245)
331 3tqc_A Pantothenate kinase; bi 96.4 0.0038 1.3E-07 52.4 5.1 25 62-86 90-114 (321)
332 2c95_A Adenylate kinase 1; tra 96.3 0.0026 9E-08 48.9 3.8 24 63-86 8-31 (196)
333 2jaq_A Deoxyguanosine kinase; 96.3 0.0022 7.6E-08 49.6 3.3 21 66-86 2-22 (205)
334 1zd8_A GTP:AMP phosphotransfer 96.3 0.0024 8.2E-08 50.7 3.5 24 63-86 6-29 (227)
335 3fb4_A Adenylate kinase; psych 96.3 0.0023 7.9E-08 50.2 3.4 21 66-86 2-22 (216)
336 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.7E-08 49.9 3.2 22 65-86 3-24 (206)
337 3dl0_A Adenylate kinase; phosp 96.3 0.0025 8.6E-08 50.0 3.4 21 66-86 2-22 (216)
338 2plr_A DTMP kinase, probable t 96.3 0.0025 8.5E-08 49.7 3.4 23 64-86 4-26 (213)
339 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0044 1.5E-07 54.2 5.2 66 62-129 65-153 (457)
340 1zak_A Adenylate kinase; ATP:A 96.3 0.0025 8.6E-08 50.3 3.4 24 63-86 4-27 (222)
341 3iij_A Coilin-interacting nucl 96.3 0.0027 9.2E-08 48.3 3.4 24 63-86 10-33 (180)
342 2bbs_A Cystic fibrosis transme 96.3 0.0026 8.9E-08 52.7 3.5 27 62-88 62-88 (290)
343 2ehv_A Hypothetical protein PH 96.3 0.0026 8.7E-08 51.0 3.4 24 62-85 28-51 (251)
344 1xjc_A MOBB protein homolog; s 96.3 0.0028 9.7E-08 48.0 3.4 24 63-86 3-26 (169)
345 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.011 3.8E-07 49.8 7.5 26 63-88 170-195 (330)
346 2cdn_A Adenylate kinase; phosp 96.3 0.0032 1.1E-07 48.9 3.8 25 62-86 18-42 (201)
347 1nn5_A Similar to deoxythymidy 96.2 0.0031 1.1E-07 49.3 3.7 24 63-86 8-31 (215)
348 3n70_A Transport activator; si 96.2 0.071 2.4E-06 38.8 11.0 26 62-87 22-47 (145)
349 2wwf_A Thymidilate kinase, put 96.2 0.0031 1.1E-07 49.2 3.7 24 63-86 9-32 (212)
350 3tlx_A Adenylate kinase 2; str 96.2 0.0036 1.2E-07 50.3 4.2 25 62-86 27-51 (243)
351 3nh6_A ATP-binding cassette SU 96.2 0.0017 6E-08 54.1 2.3 27 62-88 78-104 (306)
352 2kjq_A DNAA-related protein; s 96.2 0.0023 7.9E-08 47.4 2.7 25 63-87 35-59 (149)
353 3be4_A Adenylate kinase; malar 96.2 0.0029 1E-07 49.8 3.4 24 63-86 4-27 (217)
354 4a74_A DNA repair and recombin 96.2 0.0024 8.2E-08 50.5 2.8 25 62-86 23-47 (231)
355 4e22_A Cytidylate kinase; P-lo 96.2 0.0036 1.2E-07 50.6 3.9 24 62-85 25-48 (252)
356 1odf_A YGR205W, hypothetical 3 96.2 0.0075 2.6E-07 49.9 5.8 26 61-86 28-53 (290)
357 2pjz_A Hypothetical protein ST 96.2 0.0033 1.1E-07 51.3 3.6 25 64-88 30-54 (263)
358 3bos_A Putative DNA replicatio 96.2 0.0069 2.4E-07 47.9 5.5 25 63-87 51-75 (242)
359 1rz3_A Hypothetical protein rb 96.2 0.003 1E-07 49.1 3.3 25 62-86 20-44 (201)
360 1tev_A UMP-CMP kinase; ploop, 96.2 0.0031 1E-07 48.4 3.2 23 64-86 3-25 (196)
361 2f1r_A Molybdopterin-guanine d 96.1 0.0015 5E-08 49.7 1.2 23 65-87 3-25 (171)
362 3jvv_A Twitching mobility prot 96.1 0.0038 1.3E-07 53.2 3.9 25 63-87 122-146 (356)
363 3te6_A Regulatory protein SIR3 96.1 0.016 5.5E-07 48.5 7.6 31 57-87 38-68 (318)
364 1ukz_A Uridylate kinase; trans 96.1 0.0035 1.2E-07 48.6 3.4 25 62-86 13-37 (203)
365 1via_A Shikimate kinase; struc 96.1 0.003 1E-07 47.9 2.9 22 65-86 5-26 (175)
366 2p65_A Hypothetical protein PF 96.1 0.0058 2E-07 46.2 4.6 26 62-87 41-66 (187)
367 1sq5_A Pantothenate kinase; P- 96.1 0.0032 1.1E-07 52.6 3.3 25 62-86 78-102 (308)
368 3sr0_A Adenylate kinase; phosp 96.1 0.0037 1.3E-07 49.0 3.4 22 66-87 2-23 (206)
369 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0038 1.3E-07 53.2 3.7 27 62-88 28-54 (359)
370 2gza_A Type IV secretion syste 96.1 0.0054 1.9E-07 52.4 4.7 27 62-88 173-199 (361)
371 2pez_A Bifunctional 3'-phospho 96.1 0.0036 1.2E-07 47.6 3.2 24 63-86 4-27 (179)
372 3tui_C Methionine import ATP-b 96.1 0.0041 1.4E-07 53.1 3.9 27 62-88 52-78 (366)
373 1gvn_B Zeta; postsegregational 96.1 0.0032 1.1E-07 52.0 3.1 25 62-86 31-55 (287)
374 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0036 1.2E-07 50.9 3.4 23 64-86 4-26 (260)
375 1tue_A Replication protein E1; 96.1 0.006 2E-07 47.6 4.4 24 63-86 57-80 (212)
376 2x8a_A Nuclear valosin-contain 96.1 0.0053 1.8E-07 50.3 4.4 22 66-87 46-67 (274)
377 1e4v_A Adenylate kinase; trans 96.1 0.0038 1.3E-07 49.0 3.4 21 66-86 2-22 (214)
378 1lw7_A Transcriptional regulat 96.0 0.0027 9.3E-08 54.3 2.6 24 64-87 170-193 (365)
379 2yyz_A Sugar ABC transporter, 96.0 0.0043 1.5E-07 52.9 3.8 27 62-88 27-53 (359)
380 2vli_A Antibiotic resistance p 96.0 0.0028 9.5E-08 48.2 2.4 24 63-86 4-27 (183)
381 2bwj_A Adenylate kinase 5; pho 96.0 0.0044 1.5E-07 47.7 3.5 23 64-86 12-34 (199)
382 2it1_A 362AA long hypothetical 96.0 0.0045 1.5E-07 52.9 3.9 27 62-88 27-53 (362)
383 1ak2_A Adenylate kinase isoenz 96.0 0.0049 1.7E-07 49.1 3.8 25 62-86 14-38 (233)
384 1uf9_A TT1252 protein; P-loop, 96.0 0.004 1.4E-07 48.1 3.2 26 62-87 6-31 (203)
385 3rlf_A Maltose/maltodextrin im 96.0 0.0048 1.7E-07 52.9 3.9 27 62-88 27-53 (381)
386 1z47_A CYSA, putative ABC-tran 96.0 0.0042 1.4E-07 52.9 3.4 27 62-88 39-65 (355)
387 3b9q_A Chloroplast SRP recepto 96.0 0.004 1.4E-07 51.8 3.3 24 63-86 99-122 (302)
388 1v43_A Sugar-binding transport 96.0 0.005 1.7E-07 52.8 3.9 27 62-88 35-61 (372)
389 2ewv_A Twitching motility prot 95.9 0.004 1.4E-07 53.5 3.2 26 62-87 134-159 (372)
390 2pt5_A Shikimate kinase, SK; a 95.9 0.0047 1.6E-07 46.2 3.3 21 66-86 2-22 (168)
391 1ixz_A ATP-dependent metallopr 95.9 0.004 1.4E-07 50.2 3.0 22 66-87 51-72 (254)
392 1e6c_A Shikimate kinase; phosp 95.9 0.0048 1.6E-07 46.4 3.2 22 65-86 3-24 (173)
393 2iyv_A Shikimate kinase, SK; t 95.9 0.0044 1.5E-07 47.3 3.0 22 65-86 3-24 (184)
394 2vp4_A Deoxynucleoside kinase; 95.9 0.0035 1.2E-07 49.9 2.6 26 62-87 18-43 (230)
395 2oap_1 GSPE-2, type II secreti 95.9 0.0064 2.2E-07 54.4 4.4 26 63-88 259-284 (511)
396 2pbr_A DTMP kinase, thymidylat 95.9 0.0051 1.7E-07 47.1 3.2 21 66-86 2-22 (195)
397 2b8t_A Thymidine kinase; deoxy 95.9 0.012 4E-07 46.7 5.4 25 62-86 10-34 (223)
398 3umf_A Adenylate kinase; rossm 95.9 0.0056 1.9E-07 48.4 3.4 23 65-87 30-52 (217)
399 1g29_1 MALK, maltose transport 95.8 0.0051 1.7E-07 52.8 3.4 26 63-88 28-53 (372)
400 1qf9_A UMP/CMP kinase, protein 95.8 0.0056 1.9E-07 46.8 3.4 23 64-86 6-28 (194)
401 2xb4_A Adenylate kinase; ATP-b 95.8 0.0056 1.9E-07 48.5 3.4 21 66-86 2-22 (223)
402 1in4_A RUVB, holliday junction 95.8 0.0056 1.9E-07 51.7 3.6 24 64-87 51-74 (334)
403 2z0h_A DTMP kinase, thymidylat 95.8 0.0057 2E-07 47.0 3.4 22 66-87 2-23 (197)
404 2ze6_A Isopentenyl transferase 95.8 0.0047 1.6E-07 50.0 3.0 21 66-86 3-23 (253)
405 1m7g_A Adenylylsulfate kinase; 95.8 0.0075 2.6E-07 47.2 4.1 25 62-86 23-47 (211)
406 2p5t_B PEZT; postsegregational 95.8 0.0033 1.1E-07 50.8 2.0 26 62-87 30-55 (253)
407 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0055 1.9E-07 48.3 3.2 24 63-86 22-45 (235)
408 4eaq_A DTMP kinase, thymidylat 95.8 0.0058 2E-07 48.7 3.3 25 63-87 25-49 (229)
409 3d31_A Sulfate/molybdate ABC t 95.8 0.0042 1.4E-07 52.8 2.6 27 62-88 24-50 (348)
410 3gd7_A Fusion complex of cysti 95.8 0.0064 2.2E-07 52.4 3.7 26 62-87 45-70 (390)
411 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0058 2E-07 53.9 3.6 27 61-87 135-161 (460)
412 3h4m_A Proteasome-activating n 95.8 0.026 8.9E-07 46.1 7.3 26 62-87 49-74 (285)
413 1fnn_A CDC6P, cell division co 95.7 0.016 5.4E-07 49.5 6.1 22 66-87 46-67 (389)
414 3nwj_A ATSK2; P loop, shikimat 95.7 0.0058 2E-07 49.4 3.1 23 64-86 48-70 (250)
415 1gtv_A TMK, thymidylate kinase 95.7 0.0025 8.5E-08 49.8 0.9 21 66-86 2-22 (214)
416 1vht_A Dephospho-COA kinase; s 95.7 0.0064 2.2E-07 47.8 3.3 23 64-86 4-26 (218)
417 2w58_A DNAI, primosome compone 95.7 0.019 6.6E-07 44.3 5.9 23 65-87 55-77 (202)
418 2og2_A Putative signal recogni 95.6 0.0065 2.2E-07 51.8 3.3 24 63-86 156-179 (359)
419 2ga8_A Hypothetical 39.9 kDa p 95.6 0.016 5.5E-07 49.1 5.7 26 61-86 21-46 (359)
420 1iy2_A ATP-dependent metallopr 95.6 0.0059 2E-07 50.0 3.0 22 66-87 75-96 (278)
421 1p9r_A General secretion pathw 95.6 0.0085 2.9E-07 52.2 4.1 26 62-87 165-190 (418)
422 2cvh_A DNA repair and recombin 95.6 0.0081 2.8E-07 47.0 3.6 25 62-86 18-42 (220)
423 1oxx_K GLCV, glucose, ABC tran 95.6 0.004 1.4E-07 53.0 1.8 27 62-88 29-55 (353)
424 1svm_A Large T antigen; AAA+ f 95.6 0.0078 2.7E-07 51.7 3.6 26 61-86 166-191 (377)
425 1lv7_A FTSH; alpha/beta domain 95.6 0.0084 2.9E-07 48.4 3.7 24 64-87 45-68 (257)
426 1cr0_A DNA primase/helicase; R 95.6 0.0078 2.7E-07 49.7 3.6 26 62-87 33-58 (296)
427 4b4t_M 26S protease regulatory 95.6 0.01 3.5E-07 51.8 4.4 28 60-87 211-238 (434)
428 3kta_A Chromosome segregation 95.6 0.0072 2.5E-07 45.9 3.1 21 66-86 28-48 (182)
429 1zuh_A Shikimate kinase; alpha 95.5 0.0084 2.9E-07 44.9 3.2 23 64-86 7-29 (168)
430 2qby_B CDC6 homolog 3, cell di 95.5 0.021 7.1E-07 48.7 6.0 26 62-87 43-68 (384)
431 2f6r_A COA synthase, bifunctio 95.5 0.008 2.7E-07 49.4 3.3 24 63-86 74-97 (281)
432 4b4t_K 26S protease regulatory 95.5 0.042 1.4E-06 47.9 7.9 27 61-87 203-229 (428)
433 3r20_A Cytidylate kinase; stru 95.5 0.0096 3.3E-07 47.5 3.6 24 63-86 8-31 (233)
434 3syl_A Protein CBBX; photosynt 95.5 0.049 1.7E-06 44.9 8.1 25 62-86 65-89 (309)
435 2obl_A ESCN; ATPase, hydrolase 95.5 0.0089 3E-07 50.8 3.5 27 62-88 69-95 (347)
436 1n0w_A DNA repair protein RAD5 95.4 0.0089 3E-07 47.5 3.3 26 62-87 22-47 (243)
437 1njg_A DNA polymerase III subu 95.4 0.03 1E-06 43.9 6.5 22 65-86 46-67 (250)
438 1uj2_A Uridine-cytidine kinase 95.4 0.0085 2.9E-07 48.3 3.2 25 62-86 20-44 (252)
439 3cf0_A Transitional endoplasmi 95.4 0.013 4.3E-07 48.7 4.3 26 62-87 47-72 (301)
440 4b4t_L 26S protease subunit RP 95.4 0.013 4.4E-07 51.2 4.4 28 60-87 211-238 (437)
441 1yqt_A RNAse L inhibitor; ATP- 95.4 0.011 3.7E-07 53.3 3.9 27 62-88 45-71 (538)
442 3b60_A Lipid A export ATP-bind 95.4 0.0096 3.3E-07 54.2 3.6 26 63-88 368-393 (582)
443 1q3t_A Cytidylate kinase; nucl 95.3 0.012 4E-07 47.0 3.6 25 62-86 14-38 (236)
444 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.011 3.7E-07 43.7 3.1 20 66-85 25-44 (149)
445 3b5x_A Lipid A export ATP-bind 95.3 0.011 3.7E-07 53.9 3.7 27 62-88 367-393 (582)
446 1sxj_C Activator 1 40 kDa subu 95.3 0.02 6.9E-07 48.2 5.1 25 63-87 45-69 (340)
447 3t15_A Ribulose bisphosphate c 95.3 0.012 4.1E-07 48.6 3.6 25 63-87 35-59 (293)
448 3b9p_A CG5977-PA, isoform A; A 95.3 0.012 4.2E-07 48.4 3.7 26 62-87 52-77 (297)
449 4b4t_J 26S protease regulatory 95.3 0.014 4.9E-07 50.3 4.1 27 61-87 179-205 (405)
450 1zcb_A G alpha I/13; GTP-bindi 95.3 0.01 3.6E-07 50.6 3.3 24 61-84 30-53 (362)
451 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.013 4.5E-07 47.1 3.7 25 62-86 37-61 (262)
452 2qby_A CDC6 homolog 1, cell di 95.2 0.013 4.5E-07 49.8 3.7 26 62-87 43-68 (386)
453 3e2i_A Thymidine kinase; Zn-bi 95.2 0.046 1.6E-06 42.9 6.4 114 62-191 26-143 (219)
454 1sxj_E Activator 1 40 kDa subu 95.1 0.015 5E-07 49.2 3.8 24 63-86 35-58 (354)
455 2dpy_A FLII, flagellum-specifi 95.1 0.013 4.4E-07 51.4 3.5 28 61-88 154-181 (438)
456 2yl4_A ATP-binding cassette SU 95.1 0.0098 3.3E-07 54.3 2.9 26 63-88 369-394 (595)
457 3j16_B RLI1P; ribosome recycli 95.1 0.015 5E-07 53.2 3.9 27 62-88 101-127 (608)
458 1d2n_A N-ethylmaleimide-sensit 95.1 0.035 1.2E-06 45.1 5.8 27 61-87 61-87 (272)
459 3qf4_B Uncharacterized ABC tra 95.1 0.011 3.7E-07 54.0 3.0 27 62-88 379-405 (598)
460 4b4t_I 26S protease regulatory 95.0 0.077 2.6E-06 46.1 8.0 29 59-87 211-239 (437)
461 1ltq_A Polynucleotide kinase; 95.0 0.013 4.5E-07 48.4 3.1 21 66-86 4-24 (301)
462 1nlf_A Regulatory protein REPA 95.0 0.014 4.7E-07 47.8 3.2 24 63-86 29-52 (279)
463 3ozx_A RNAse L inhibitor; ATP 95.0 0.013 4.5E-07 52.8 3.3 27 62-88 23-49 (538)
464 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.5E-07 45.3 2.9 25 63-87 11-35 (192)
465 3euj_A Chromosome partition pr 95.0 0.012 4.1E-07 52.1 3.0 22 65-86 30-51 (483)
466 2qmh_A HPR kinase/phosphorylas 95.0 0.016 5.4E-07 45.0 3.2 26 63-88 33-58 (205)
467 3qf7_A RAD50; ABC-ATPase, ATPa 95.0 0.014 4.6E-07 50.0 3.1 20 66-85 25-44 (365)
468 4a82_A Cystic fibrosis transme 94.9 0.0094 3.2E-07 54.2 2.2 27 62-88 365-391 (578)
469 3bk7_A ABC transporter ATP-bin 94.9 0.016 5.4E-07 53.0 3.7 27 62-88 115-141 (607)
470 1cp2_A CP2, nitrogenase iron p 94.9 0.28 9.7E-06 39.4 10.9 70 115-188 115-186 (269)
471 1p5z_B DCK, deoxycytidine kina 94.9 0.0097 3.3E-07 48.3 2.0 26 62-87 22-47 (263)
472 2v1u_A Cell division control p 94.9 0.015 5.3E-07 49.4 3.3 26 62-87 42-67 (387)
473 1w4r_A Thymidine kinase; type 94.9 0.033 1.1E-06 43.0 4.8 24 63-86 19-43 (195)
474 4b4t_H 26S protease regulatory 94.8 0.021 7.2E-07 50.1 4.0 28 60-87 239-266 (467)
475 3pxg_A Negative regulator of g 94.8 0.032 1.1E-06 49.3 5.3 26 62-87 199-224 (468)
476 3qf4_A ABC transporter, ATP-bi 94.8 0.013 4.4E-07 53.5 2.7 26 63-88 368-393 (587)
477 4fcw_A Chaperone protein CLPB; 94.8 0.041 1.4E-06 45.4 5.6 23 65-87 48-70 (311)
478 1l8q_A Chromosomal replication 94.8 0.016 5.4E-07 48.5 3.1 24 63-86 36-59 (324)
479 3hws_A ATP-dependent CLP prote 94.8 0.054 1.9E-06 46.0 6.4 25 63-87 50-74 (363)
480 2dr3_A UPF0273 protein PH0284; 94.7 0.02 6.7E-07 45.5 3.4 25 62-86 21-45 (247)
481 3zvl_A Bifunctional polynucleo 94.7 0.021 7.1E-07 49.7 3.7 25 63-87 257-281 (416)
482 1yqt_A RNAse L inhibitor; ATP- 94.7 0.019 6.4E-07 51.8 3.5 26 63-88 311-336 (538)
483 3ake_A Cytidylate kinase; CMP 94.7 0.019 6.5E-07 44.4 3.1 21 66-86 4-24 (208)
484 1ofh_A ATP-dependent HSL prote 94.7 0.019 6.6E-07 47.3 3.3 25 62-86 48-72 (310)
485 3a8t_A Adenylate isopentenyltr 94.7 0.022 7.4E-07 48.0 3.6 25 63-87 39-63 (339)
486 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.049 1.7E-06 48.5 6.1 23 65-87 42-64 (500)
487 1xp8_A RECA protein, recombina 94.7 0.084 2.9E-06 45.0 7.3 25 62-86 72-96 (366)
488 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.022 7.4E-07 47.8 3.6 25 63-87 44-68 (322)
489 2ocp_A DGK, deoxyguanosine kin 94.6 0.021 7.2E-07 45.6 3.3 24 64-87 2-25 (241)
490 3ozx_A RNAse L inhibitor; ATP 94.6 0.019 6.5E-07 51.7 3.3 26 63-88 293-318 (538)
491 1sxj_D Activator 1 41 kDa subu 94.6 0.026 9E-07 47.4 4.0 23 65-87 59-81 (353)
492 3pfi_A Holliday junction ATP-d 94.6 0.064 2.2E-06 44.9 6.3 26 62-87 53-78 (338)
493 3bk7_A ABC transporter ATP-bin 94.5 0.021 7.2E-07 52.2 3.5 26 63-88 381-406 (607)
494 3eie_A Vacuolar protein sortin 94.5 0.024 8.1E-07 47.5 3.6 25 63-87 50-74 (322)
495 3co5_A Putative two-component 94.5 0.014 4.8E-07 42.6 1.9 25 63-87 26-50 (143)
496 3uk6_A RUVB-like 2; hexameric 94.5 0.057 1.9E-06 45.7 6.0 23 64-86 70-92 (368)
497 1a7j_A Phosphoribulokinase; tr 94.5 0.014 4.7E-07 48.3 2.0 24 63-86 4-27 (290)
498 1pzn_A RAD51, DNA repair and r 94.5 0.019 6.6E-07 48.7 2.8 26 62-87 129-154 (349)
499 2r62_A Cell division protease 94.5 0.013 4.4E-07 47.5 1.6 25 63-87 43-67 (268)
500 3v9p_A DTMP kinase, thymidylat 94.4 0.021 7.1E-07 45.4 2.8 25 62-86 23-47 (227)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=3.4e-30 Score=207.34 Aligned_cols=161 Identities=18% Similarity=0.245 Sum_probs=123.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|.+|||||||+++++.+.|...+.+++. .++.......++..+.++||||+|+++|+.++..|++.++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig---~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG---IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc---eEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 4568999999999999999999999888665555442 3344444555777789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|||+++. .+++.+..|+..+.... ..++|+++|+||+|+...+. .++..+..+
T Consensus 88 ~~ilv~di~~~-~Sf~~i~~~~~~i~~~~---~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~----------------- 146 (216)
T 4dkx_A 88 AAVVVYDITNV-NSFQQTTKWIDDVRTER---GSDVIIMLVGNKTDLADKRQVSIEEGERKAK----------------- 146 (216)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHH---TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEeecchh-HHHHHHHHHHHHHHHhc---CCCCeEEEEeeccchHhcCcccHHHHhhHHH-----------------
Confidence 99999999997 78999999999887653 36799999999999976543 222221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+|+||++|+ |++++++|.+.+
T Consensus 147 -------------------~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 147 -------------------ELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp -------------------HHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred -------------------HhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 224579999999999 999999998765
No 2
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=3.4e-29 Score=201.32 Aligned_cols=199 Identities=33% Similarity=0.550 Sum_probs=136.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCc-cccEEEEeCCCCCCchh-hHHhhhc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK-IKPVHLVDVPGHSRLRP-KLDEFLP 138 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~-~~~~~~~ 138 (267)
..+.++|+++|++|+|||||+++|+++.+..... +++..+.. ..+++. .+.+++|||||+.+++. .+..+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 77 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT----SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC----CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC----CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHh
Confidence 3567899999999999999999999887644332 22222221 233332 47899999999999888 7888999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh-hcccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR-SAVSE 217 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 217 (267)
.+|++|+|+|+++...++.....++..++........+.|+++|+||+|+......+...+.+++.+..+.... ++++.
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 99999999999874234556666666655432112357899999999999988888888888888877554433 23344
Q ss_pred ccccccc--cCCCCCCCcccccccceeEEEEeeeccC------c-chhHHHHHHhhc
Q 024474 218 ADVTNDF--TLGIPGQAFSFSQCHNKVSVAEASGLTG------E-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~-i~~l~~~l~~~~ 265 (267)
.+..... ..+..+..|.+++...++.|++|||++| + ++++++||.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 3333222 3455566777777667899999999999 8 999999998764
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.2e-27 Score=185.10 Aligned_cols=164 Identities=21% Similarity=0.350 Sum_probs=120.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+. ...++.... .....++ .+.+++|||||+++++..+..+++.+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-----~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 84 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-----VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT 84 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-----CEEEEET--TEEEEEEECCC----CGGGHHHHTTC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-----eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 467899999999999999999999987754 222222211 1111122 37899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+......+++.+.+... .
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~---------~------ 146 (187)
T 1zj6_A 85 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKLT---------S------ 146 (187)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTGG---------G------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhchh--hCCCeEEEEEECCCCcCCCCHHHHHHHhChh---------h------
Confidence 999999999987 689999999998887532 2679999999999998755544433322110 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ..++.++++||++|+ ++++++||.+.+.
T Consensus 147 --------------~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 147 --------------IK--DHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp --------------CC--SSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred --------------hc--CCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 00 234689999999999 9999999998764
No 4
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=6.1e-28 Score=186.29 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=121.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI---GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence 4689999999999999999999887644332222 2233333334456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH-HHHHHHHHHHHHhhhhccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI-RKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.......++ .+...+...
T Consensus 80 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~---------------- 139 (170)
T 1ek0_A 80 LVVYDVTKP-QSFIKARHWVKELHEQA---SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE---------------- 139 (170)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH----------------
T ss_pred EEEEecCCh-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCccccccccCCCHHHHHHHHH----------------
Confidence 999999986 67888888888887653 267899999999999754211000 011111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.++
T Consensus 140 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 140 ----------------EKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ----------------HHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123479999999999 9999999998764
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=7.2e-27 Score=183.06 Aligned_cols=163 Identities=23% Similarity=0.379 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|||||||+++|.+..+. .+.++.+ +.......+ .+.+++|||||++.++..+..+++.+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g-~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQG-FNIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETT-EEEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCC-eEEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 56789999999999999999999987542 1222222 122222223 468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 86 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~---------- 145 (181)
T 1fzq_A 86 ILIYVIDSADR-KRFEETGQELTELLEEEK--LSCVPVLIFANKQDLLTAAPASEIAEGLNL-------H---------- 145 (181)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHTTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHhChh--hcCCCEEEEEECcCcccCCCHHHHHHHhCc-------h----------
Confidence 99999999987 678888889888876432 267899999999999876554333221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. ...++.++++||++|+ ++++++||.+.+.
T Consensus 146 -------------~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 146 -------------TI-RDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred -------------hc-cCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 0234679999999999 9999999988764
No 6
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=2.5e-27 Score=187.95 Aligned_cols=167 Identities=17% Similarity=0.318 Sum_probs=123.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
....++|+++|.+|||||||+++|+++.+.. ...++ .+ +.... ++...+.+++|||||++++...+..+++.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t----~~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT----VG-YNVET--FEKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC----SS-EEEEE--EEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc----cc-eeEEE--EEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 4567899999999999999999999987644 22222 22 22221 23445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC-----CCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV-----KKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+|++|+|||+++. .++.....|+..++...... ..+.|+++|+||+|+......+++.+.+.....
T Consensus 87 ~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-------- 157 (199)
T 4bas_A 87 IDAVIFVVDSSDH-LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-------- 157 (199)
T ss_dssp CSEEEEEEETTCG-GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH--------
T ss_pred CCEEEEEEECCcH-HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh--------
Confidence 9999999999987 77999999999887642110 127899999999999887666555444331100
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ..++.++++||++|+ +++++++|.+.+
T Consensus 158 --------------------~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 158 --------------------MG--DHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp --------------------HT--TSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred --------------------cc--CCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 00 245689999999999 999999998764
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=2.3e-27 Score=182.28 Aligned_cols=160 Identities=22% Similarity=0.401 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEE
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIV 144 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii 144 (267)
+||+++|++|+|||||++++.++.+.. ..++. . +.... +....+.+++|||||+++++..+..+++++|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~----~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 72 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI----G-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 72 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCS----S-CCEEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcC----c-eeEEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEE
Confidence 489999999999999999999877542 22222 2 11111 1233478999999999999999999999999999
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 024474 145 FVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDF 224 (267)
Q Consensus 145 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
+|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 73 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~------------- 129 (164)
T 1r8s_A 73 FVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL-------H------------- 129 (164)
T ss_dssp EEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G-------------
T ss_pred EEEECCCH-HHHHHHHHHHHHHHhchh--hcCCeEEEEEECcCCcCCCCHHHHHHHhCc-------c-------------
Confidence 99999987 678888899988876432 257899999999999766544332221110 0
Q ss_pred cCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 225 TLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ..++.++++||++|+ +++++++|.+.++
T Consensus 130 ----------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 ----------SLR-HRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp ----------GCS-SCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ----------ccc-CccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 000 234679999999999 9999999998764
No 8
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=1.8e-27 Score=183.65 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=123.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d 80 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI---GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCC
Confidence 356799999999999999999999877644332222 22233333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 139 (170)
T 1r2q_A 81 AAIVVYDITNE-ESFARAKNWVKELQRQA---SPNIVIALSGNKADLANKRAVDFQEAQSYA----D------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCccccccCHHHHHHHH----H-------------
Confidence 99999999986 67888888888887653 26789999999999965432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 140 -------------------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 -------------------DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123578999999999 9999999998875
No 9
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=2.4e-27 Score=187.60 Aligned_cols=165 Identities=21% Similarity=0.343 Sum_probs=118.7
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
...+.++|+++|++|+|||||+++|.++.+.. .. |+.. +..... ....+.+.+|||||+++++..+..+++.
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~----~t~~-~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIG-FNVETV--EYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EE----EETT-EEEEEE--EETTEEEEEEECC-----CTTHHHHHHT
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cC----CcCc-eeEEEE--EECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 35678899999999999999999999877532 22 2222 222222 2234789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 97 ~d~iilv~D~~~~-~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~-------~-------- 158 (192)
T 2b6h_A 97 TQGLIFVVDSNDR-ERVQESADELQKMLQEDE--LRDAVLLVFANKQDMPNAMPVSELTDKLGL-------Q-------- 158 (192)
T ss_dssp CCEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G--------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHhcccc--cCCCeEEEEEECCCCCCCCCHHHHHHHhCc-------c--------
Confidence 9999999999987 678889999988876432 257999999999999766544332221110 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ...++.++++||++|+ ++++++||.+.+.
T Consensus 159 ---------------~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 ---------------HL-RSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ---------------GC-SSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ---------------cc-cCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 00 0234679999999999 9999999998764
No 10
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=2.9e-27 Score=182.87 Aligned_cols=163 Identities=21% Similarity=0.367 Sum_probs=122.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.++.+.. .. ++.. .......++ ...+.+|||||+++++..+..+++.+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~----~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 76 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TI----PTIG-FNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTD 76 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC----CCSS-EEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cC----CcCc-cceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCC
Confidence 467899999999999999999999877532 22 2211 222222222 468999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 77 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 136 (171)
T 1upt_A 77 AVIYVVDSCDR-DRIGISKSELVAMLEEEE--LRKAILVVFANKQDMEQAMTSSEMANSLGL-------P---------- 136 (171)
T ss_dssp EEEEEEETTCC-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTG-------G----------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhchh--hCCCEEEEEEECCCCcCCCCHHHHHHHhCc-------h----------
Confidence 99999999987 678889999988876532 267899999999999876555443322210 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ..++.++++||++|+ ++++++||.+.++
T Consensus 137 -------------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 137 -------------ALK-DRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp -------------GCT-TSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------hcc-CCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 000 234589999999999 9999999988753
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=3.1e-27 Score=187.84 Aligned_cols=175 Identities=25% Similarity=0.375 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||+++|.++.+.. ..++..++.. ...+++ +.+++|||||+++++..+..+++.+|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~-----~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d 94 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE-----ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAIN 94 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-----EEEETT--EEEEEEEECC----CCGGGGGGGGCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCceeE-----EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCC
Confidence 466799999999999999999999877532 2233332211 122233 68999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .++.....|+.+++.... ..+.|+++|+||+|+......+++.+.+.. . .......
T Consensus 95 ~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~----~~~~~~~-- 161 (198)
T 1f6b_A 95 GIVFLVDCADH-ERLLESKEELDSLMTDET--IANVPILILGNKIDRPEAISEERLREMFGL----Y----GQTTGKG-- 161 (198)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTSCEEEEEECTTSTTCCCHHHHHHHHTC----T----TTCCCSS--
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCcEEEEEECCCccccCCHHHHHHHhCc----c----ccccccc--
Confidence 99999999987 689999999998886532 267999999999999865454443322211 0 0000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.- .....+.+++|||++|+ ++++++||.+.+.
T Consensus 162 --------~~~~~~-~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 162 --------SVSLKE-LNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp --------CCCTTT-CCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred --------cccccc-ccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 000000 00245689999999999 9999999998763
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=4e-27 Score=181.25 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++ ..........+++..+.+.+|||||+.++...+..+++.+|+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----IEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----SEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----ccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 3579999999999999999999987764433222 222222333446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+..... .++..+.. ..
T Consensus 78 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~------------- 137 (167)
T 1c1y_A 78 FALVYSITAQ-STFNDLQDLREQILRVKD--TEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQ------------- 137 (167)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHHC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HH-------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhhC--cCCCcEEEEEECccccccccCCHHHHHHHH----HH-------------
Confidence 9999999986 667777788777765321 25799999999999975432 22222111 10
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ ++++++||.+.+.
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 138 ------------------WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ------------------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ------------------ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 124579999999999 9999999988753
No 13
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=2.6e-27 Score=186.05 Aligned_cols=161 Identities=15% Similarity=0.237 Sum_probs=120.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+|+|.++.+... ..++..+........++..+.+.+|||||++++...+..+++.+|+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE----YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC----CCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 467999999999999999999998775332 2333333333444456666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.......+..+.+.+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------------------- 136 (189)
T 4dsu_A 79 FLCVFAINNT-KSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------------------- 136 (189)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHH-------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcccccCHHHHHHHHH-------------------
Confidence 9999999986 678888888888776432 267999999999999754433222222221
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 137 ----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 137 ----------------SYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ----------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 14
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=3.3e-27 Score=186.02 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=123.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.++.++|+++|++|+|||||+++|.++.+.....++... ++ .. +....+.+.+|||||++++...+..+++.+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~--~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF---NM--RK--ITKGNVTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE---EE--EE--EEETTEEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCce---eE--EE--EEeCCEEEEEEECCCCHhHHHHHHHHHccC
Confidence 356789999999999999999999988765333332221 11 11 223347899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+.......++.+.+.. .
T Consensus 92 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~--------- 152 (188)
T 1zd9_A 92 SAIVYMVDAADQ-EKIEASKNELHNLLDKPQ--LQGIPVLVLGNKRDLPGALDEKELIEKMNL-------S--------- 152 (188)
T ss_dssp SEEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTG-------G---------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhCcc--cCCCCEEEEEECCCCccCCCHHHHHHHhCh-------h---------
Confidence 999999999986 678899999988876432 267899999999999876444332221110 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.. ...+.++++||++|+ ++++++||.+.++
T Consensus 153 --------------~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 --------------AIQ-DREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp --------------GCC-SSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred --------------hhc-cCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 234678999999999 9999999998764
No 15
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=6.2e-27 Score=184.88 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=120.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+..+|+++|++|||||||++++.++.+.. ..++..++ .....+++ +.+++|||||+++++..+..+++.+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~-----~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT-----SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVN 92 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE-----EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC-----eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 456799999999999999999999887532 22222221 12222233 68999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . ....
T Consensus 93 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----~-----~~~~---- 156 (190)
T 1m2o_B 93 GIVFLVDAADP-ERFDEARVELDALFNIAE--LKDVPFVILGNKIDAPNAVSEAELRSALGL----L-----NTTG---- 156 (190)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCCEEEEEECTTSTTCCCHHHHHHHTTC----S-----SCCC----
T ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHcchh--hcCCCEEEEEECCCCcCCCCHHHHHHHhCC----c-----cccc----
Confidence 99999999987 688999999988876432 267999999999999865444433222110 0 0000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+. +. ....+.++++||++|+ ++++++||.+++
T Consensus 157 -------~~~---~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 157 -------SQR---IE-GQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -------------CC-SSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -------ccc---cc-ccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 000 11 1345689999999999 999999998764
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=6.6e-27 Score=182.62 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=123.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCS---CCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCc---eeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 3456799999999999999999999887654333332 2223333333455667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+..... .++..+..+
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 145 (181)
T 2efe_B 86 AAAIIVFDVTNQ-ASFERAKKWVQELQAQG---NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ---------------- 145 (181)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH----------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccccCCHHHHHHHHH----------------
Confidence 999999999986 67788888888887653 25889999999999975432 222222111
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 146 --------------------ENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp --------------------HTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred --------------------HcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123479999999999 9999999998764
No 17
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=8.5e-27 Score=182.50 Aligned_cols=163 Identities=21% Similarity=0.339 Sum_probs=119.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|.+|+|||||+++|.++.+ ....++.... .....++ ++.+.+|||||+++++..+..+++.+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-----~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-----VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-----CEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-----eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccC
Confidence 34678999999999999999999999876 2222222211 1111122 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . .
T Consensus 90 d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~-----~- 151 (181)
T 2h17_A 90 EFVIVVVDSTDR-ERISVTREELYKMLAHED--LRKAGLLIFANKQDVKECMTVAEISQFLKL---------T-----S- 151 (181)
T ss_dssp CEEEEEEETTCT-TTHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG---------G-----G-
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChh--hCCCeEEEEEECCCcccCCCHHHHHHHhCc---------c-----c-
Confidence 999999999987 689999999988886422 267899999999999875554443322110 0 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...++.++++||++|+ ++++++||.+.+
T Consensus 152 --------------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 152 --------------I--KDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp --------------C--CSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred --------------c--cCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 0 0234589999999999 999999998753
No 18
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8e-27 Score=184.41 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI---GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCS---SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCc---ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 456899999999999999999999887643333322 22333333444556678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 98 ~iilV~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~----~------------- 156 (192)
T 2fg5_A 98 AAVIVYDITKQ-DSFYTLKKWVKELKEHG---PENIVMAIAGNKCDLSDIREVPLKDAKEYA----E------------- 156 (192)
T ss_dssp EEEEEEETTCT-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999987 67888888888876642 25789999999999975332 22222111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 157 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 -------------------SIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -------------------TTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 123579999999999 9999999998764
No 19
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=5.8e-27 Score=184.03 Aligned_cols=162 Identities=18% Similarity=0.303 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++.++. .....++.. ........+ ...+++|||||+++++..+..+++.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-----~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 87 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-----FNIKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTD 87 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-----EEEEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-----cceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 578899999999999999999999876 232222222 122222222 368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 147 (186)
T 1ksh_A 88 GLIWVVDSADR-QRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGALSCNAIQEALEL-------D---------- 147 (186)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHhChh--cCCCcEEEEEeCccCCCCCCHHHHHHHhCh-------h----------
Confidence 99999999987 678888899988877532 267999999999999876554433221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ...++.++++||++|+ +++++++|.+.+
T Consensus 148 -------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 148 -------------SI-RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------hc-cCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0235689999999999 999999998765
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=2e-27 Score=183.52 Aligned_cols=161 Identities=17% Similarity=0.285 Sum_probs=117.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 78 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI---GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMG 78 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCE
Confidence 34699999999999999999999887644333332 333444444456666789999999999998889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+.......+..+.+ ..
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~---------------- 135 (170)
T 1g16_A 79 IILVYDITDE-RTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEAL---AK---------------- 135 (170)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTCCSCHHHHHHH---HH----------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCCcCccCHHHHHHH---HH----------------
Confidence 9999999986 56777788887776643 2578999999999995432221111111 11
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 136 ----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ----------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ----------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 21
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=183.57 Aligned_cols=165 Identities=21% Similarity=0.390 Sum_probs=122.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-cccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS-THQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
.+.++|+++|.+|+|||||+++|.+.. +..... ++.. +......++ ++.+.+|||||+++++..+..+++.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~t~~-~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL----PTIG-FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC----CCSS-EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC----Cccc-eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999876 222222 2222 222233333 36899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. .++.....|+..++........+.|+++|+||+|+......+++.+.+.
T Consensus 92 d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------------ 152 (190)
T 2h57_A 92 QAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC------------------ 152 (190)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC------------------
Confidence 999999999986 6788888899888875321125789999999999987655544333221
Q ss_pred cccccCCCCCCCcccccc-cceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQC-HNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+..+ ..++.++++||++|+ +++++++|.+.++
T Consensus 153 --------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 --------------LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp --------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred --------------hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0000 235689999999999 9999999998764
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=187.54 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=118.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI---GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc---ceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 445799999999999999999999887644333332 22233333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+...+ ..++..+..+
T Consensus 104 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----------------- 162 (201)
T 2hup_A 104 GAILAYDITKR-SSFLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSELREVSLAEAQSLAE----------------- 162 (201)
T ss_dssp EEEEEEETTBH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCccccccccCHHHHHHHHH-----------------
Confidence 99999999986 67888888888877643 2678999999999997543 2222222111
Q ss_pred ccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++ .++++||++|+ ++++++||.+.+
T Consensus 163 -------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 163 -------------------HYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp -------------------HTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123 78999999999 999999998764
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=7.4e-27 Score=180.30 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++. +.++........+....+.+|||||++++...+..+++.+|+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI---GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce---eEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 45799999999999999999999987644332222 223333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+.... ....|+++|+||+|+..... .++..+ + ..
T Consensus 82 ~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~---~~-------------- 139 (170)
T 1z0j_A 82 AIIVYDITKE-ETFSTLKNWVRELRQHG---PPSIVVAIAGNKCDLTDVREVMERDAKD-Y---AD-------------- 139 (170)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTSEEEEEEECTTCGGGCCSCHHHHHH-H---HH--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECCccccccccCHHHHHH-H---HH--------------
Confidence 9999999986 66777888887776642 36789999999999975432 221111 1 11
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.+.
T Consensus 140 ------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 ------------------SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 123579999999999 9999999998764
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=3.9e-27 Score=181.94 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 80 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL---GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC---SCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCcc---ceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCC
Confidence 456799999999999999999999887654433333 22333334445666778999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 139 (170)
T 1z08_A 81 GAILVYDITDE-DSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEKERHVSIQEAESYA----E------------- 139 (170)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999986 67788888887765532 25789999999999976432 22222111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 140 -------------------SVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp -------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 113478999999999 999999998765
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=8.8e-27 Score=179.29 Aligned_cols=160 Identities=19% Similarity=0.287 Sum_probs=118.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||+.++...+..+++.+|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 78 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCE
Confidence 4579999999999999999999987753322 222222222233446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 137 (168)
T 1u8z_A 79 FLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRA----D-------------- 137 (168)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccccCccCHHHHHHHH----H--------------
Confidence 9999999987 678888888888776432 25799999999999975432 22222211 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 138 ------------------QWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ------------------HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998765
No 26
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=1.5e-26 Score=178.08 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.+||+++|++|+|||||+++|.+..... ..++. +.++ .....+++..+.+.+|||||+..+...+..+++.+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAA---GHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC--------------CEE-EEEEEETTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCcc---ccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 5799999999999999999998765421 11111 1222 22334466778899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+...... ++.. .+. .
T Consensus 77 i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~---~--------------- 134 (166)
T 3q72_A 77 VIVYSVTDK-GSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLVRSREVSVDEGR-ACA---V--------------- 134 (166)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHH-HHH---H---------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccccccccccCHHHHH-HHH---H---------------
Confidence 999999987 678889999888876532 267999999999999765432 2111 111 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 135 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 135 -----------------VFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp -----------------HTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -----------------HhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998765
No 27
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-26 Score=180.90 Aligned_cols=162 Identities=25% Similarity=0.412 Sum_probs=117.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|||||||++++.++.+ . ...++.+ +......++ ...+.+|||||+.+++..+..+++.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~----~~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-V----TTKPTIG-FNVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTA 87 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-E----EECSSTT-CCEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-C----ccCCcCc-cceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 6789999999999999999999998765 1 1222222 111122222 368999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|+++. .+++....|+..++.... ..+.|+++|+||+|+......+++.+.+.. . .
T Consensus 88 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~---------~-----~-- 148 (183)
T 1moz_A 88 AVIFVVDSTDK-DRMSTASKELHLMLQEEE--LQDAALLVFANKQDQPGALSASEVSKELNL---------V-----E-- 148 (183)
T ss_dssp EEEEEEETTCT-TTHHHHHHHHHHHTTSST--TSSCEEEEEEECTTSTTCCCHHHHHHHTTT---------T-----T--
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHcChh--hCCCeEEEEEECCCCCCCCCHHHHHHHhCc---------c-----c--
Confidence 99999999987 778999999988876532 267899999999999876554433221110 0 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ....+.++++||++|+ ++++++||.+.+
T Consensus 149 -------------~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 149 -------------L--KDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp -------------C--CSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred -------------c--cCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 0234689999999999 999999998865
No 28
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=6.7e-27 Score=179.77 Aligned_cols=160 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||++++.++.+... ..++..+.......+++..+.+.+|||||++++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~ 77 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK----YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc----CCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 357999999999999999999998775432 2233333333334446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+...... .+..+ ...
T Consensus 78 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~-------------- 136 (167)
T 1kao_A 78 FILVYSLVNQ-QSFQDIKPMRDQIIRVKR--YEKVPVILVGNKVDLESEREVSSSEGRA----LAE-------------- 136 (167)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGCCSCHHHHHH----HHH--------------
T ss_pred EEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECCcccccccCCHHHHHH----HHH--------------
Confidence 9999999986 677888888888776432 257999999999998654322 21111 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 137 ------------------EWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ------------------HHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ------------------HhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.6e-27 Score=186.44 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=121.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI---GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 345799999999999999999999887654333322 22333334445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ + ..
T Consensus 101 ~~i~v~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~-~---~~------------- 159 (201)
T 2ew1_A 101 ALILTYDITCE-ESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAERREVSQQRAEE-F---SE------------- 159 (201)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCSSCHHHHHH-H---HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-H---HH-------------
Confidence 99999999986 67777888888776542 26789999999999975432 222111 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 160 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 160 -------------------AQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp -------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 30
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.9e-27 Score=184.33 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI---GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC---SEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCcc---ceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45799999999999999999999887644333322 223333334446666889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 91 ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~--------------- 148 (195)
T 1x3s_A 91 VILVYDVTRR-DTFVKLDNWLNELETYCT--RNDIVNMLVGNKIDKENREVDRNEGLKFA----R--------------- 148 (195)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHTTCCS--CSCCEEEEEEECTTSSSCCSCHHHHHHHH----H---------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCcEEEEEECCcCcccccCHHHHHHHH----H---------------
Confidence 9999999986 677788888888766432 25789999999999954322 22221111 1
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 149 -----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 149 -----------------KHSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 31
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=5.9e-27 Score=187.80 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=119.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI---GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC---SCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 3467899999999999999999999887644333322 3334434444456667899999999999988899999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .++..+..|+..+.... ..+.|+++|+||+|+.......+..+.+. .
T Consensus 94 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------------- 152 (213)
T 3cph_A 94 MGIILVYDVTDE-RTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDMETRVVTADQGEALA---K-------------- 152 (213)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHT---TTCSEEEEEEECTTCSSCCSCHHHHHHHH---H--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCcccccCHHHHHHHH---H--------------
Confidence 999999999986 56777788887776642 25789999999999953322211111111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 153 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 153 ------------------ELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ------------------HHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112368999999999 999999998764
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=7.2e-27 Score=184.81 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=122.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCS---SEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc---cceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 345799999999999999999999887644332222 33344444445666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... .+..+ +. .
T Consensus 91 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 149 (196)
T 3tkl_A 91 GIIVVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDYTTAKE-FA---D------------- 149 (196)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 67788888887776643 257899999999999765432 11111 11 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 150 -------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 150 -------------------SLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp -------------------HTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 33
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=2.2e-26 Score=180.80 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=117.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|||||||+++++++.+.... .++...+. ....+++..+.+++|||||++.++ +++.+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFK-KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEE-EEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEE-EEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 467789999999999999999999998764432 23333332 344456777889999999998876 78889
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC----CCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA----HTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
|++++|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+... ...++..+..+ .
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~--------- 150 (184)
T 3ihw_A 87 DAVVFVFSLEDE-ISFQTVYNYFLRLCSFRN--ASEVPMVLVGTQDAISAANPRVIDDSRARKLST----D--------- 150 (184)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHTTSC--GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----H---------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccccCHHHHHHHHH----H---------
Confidence 999999999997 678888889988876532 157899999999999522 12222221111 1
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+.+.|+++||++|+ +++++++|.+.+
T Consensus 151 ----------------------~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 151 ----------------------LKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp ----------------------TTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------cCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 223579999999999 999999998754
No 34
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=4.6e-26 Score=183.48 Aligned_cols=194 Identities=32% Similarity=0.471 Sum_probs=137.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc-
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ- 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~- 139 (267)
..+.++|+++|++|+|||||+++|.+..+.. ..++..++.. . ......+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-~~~~~~~~~~---~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSA---A-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-BCCCSSCEEE---T-----TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-eeeecCceEE---E-----EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4577899999999999999999999887533 1112222111 1 1144689999999999999988888877
Q ss_pred ---CCEEEEEEeCC-CCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh--
Q 024474 140 ---AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR-- 212 (267)
Q Consensus 140 ---~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-- 212 (267)
+|++|+|+|++ +. .++.....|+.+++..... ...++|+++|+||+|+........+.+.+.+.+..+....
T Consensus 80 ~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCT-TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCCh-HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 55 6788888998888764211 1267999999999999988887777777766665553322
Q ss_pred --hccccccc-----cccc-cCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhhc
Q 024474 213 --SAVSEADV-----TNDF-TLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 213 --~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
..+++... .... .+... ..|.|+....++.++.+|+.+|++++|++|+.+++
T Consensus 159 ~~~~~Sa~~~~~~~~~~~~~~l~~~-~~f~~~~~~~~v~~~~~s~~~~~i~~~~~~~~~~~ 218 (218)
T 1nrj_B 159 SLNEVERKINEEDYAENTLDVLQST-DGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 218 (218)
T ss_dssp HHHC--------------CTTC-----CCCGGGSSSCEEEEECBTTTTBCHHHHHHHHHHC
T ss_pred cccccccccccccchhhhcccccCC-CCccccccCCceEEEeccccCCcHHHHHHHHHhhC
Confidence 22232221 1111 12223 67888888889999999999999999999998864
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.94 E-value=1.3e-26 Score=181.40 Aligned_cols=162 Identities=13% Similarity=0.224 Sum_probs=122.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 456789999999999999999999987654332 2223322234444566667889999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 91 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 151 (183)
T 3kkq_A 91 DGFLIVYSVTDK-ASFEHVDRFHQLILRVKD--RESFPMILVANKVDLMHLRKVTRDQGKEMA----T------------ 151 (183)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCCchhccCcCHHHHHHHH----H------------
Confidence 999999999987 678888888887765322 36789999999999976432 22222111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||+ +|+ +++++++|.+.+
T Consensus 152 --------------------~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 152 --------------------KYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp --------------------HHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 112569999999 999 999999998765
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=9.1e-27 Score=185.11 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=114.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL---GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC-------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---cceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 4567899999999999999999999887643332222 2223333344466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC------C--CHHHHHHHHHHHHHHHHhhh
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA------H--TKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~------~--~~~~~~~~l~~~~~~~~~~~ 212 (267)
|++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+... . ..++.. +...
T Consensus 102 d~iilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~----~~~~------ 167 (199)
T 2p5s_A 102 DGVLLLYDVTCE-KSFLNIREWVDMIEDAA---HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE----KLAM------ 167 (199)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHH----HHHH------
T ss_pred CEEEEEEECCCh-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccccccccccCHHHHH----HHHH------
Confidence 999999999986 66777778877665532 257899999999998521 1 111111 1011
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 168 --------------------------~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 --------------------------TYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp --------------------------HHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------------------------HcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 123479999999999 9999999988754
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=9.3e-27 Score=181.56 Aligned_cols=161 Identities=16% Similarity=0.233 Sum_probs=120.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDY----DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcccc----CCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 45689999999999999999999988654332 22222222233344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..++.... ..+.|+++|+||+|+...... ++..+ +. .
T Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~---~------------- 142 (181)
T 2fn4_A 83 GFLLVFAINDR-QSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASA-FG---A------------- 142 (181)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 678888888888765422 367899999999999764332 21111 11 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 143 -------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 143 -------------------SHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp -------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.94 E-value=8.7e-27 Score=181.38 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=121.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI---GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC---CCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 456899999999999999999999887643322222 22333333334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+..+
T Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 148 (179)
T 1z0f_A 90 GALMVYDITRR-STYNHLSSWLTDARNLT---NPNTVIILIGNKADLEAQRDVTYEEAKQFAE----------------- 148 (179)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEeCcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHHH-----------------
Confidence 99999999986 67777888887776543 26789999999999965432 222222111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 149 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 -------------------ENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998865
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.94 E-value=2.5e-26 Score=182.91 Aligned_cols=160 Identities=22% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|++..+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---ceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45799999999999999999999987654333332 223333334445666799999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+ ...
T Consensus 84 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~-------------- 141 (203)
T 1zbd_A 84 FILMYDITNE-ESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDERVVSSERGRQ----LAD-------------- 141 (203)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTSCCSCHHHHHH----HHH--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcccccCHHHHHH----HHH--------------
Confidence 9999999986 67888888888776542 25789999999999976432 222211 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 142 ------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 142 ------------------HLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp ------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ------------------HCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999988754
No 40
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=2.7e-27 Score=185.33 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI---GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHH---CEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 45799999999999999999999876543322222 223333333446666889999999999998888899999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 84 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~-------------- 141 (183)
T 2fu5_C 84 IMLVYDITNE-KSFDNIRNWIRNIEEHA---SADVEKMILGNKCDVNDKRQVSKERGEKLA----L-------------- 141 (183)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEEC--CCSCCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECccCCccCcCCHHHHHHHH----H--------------
Confidence 9999999986 67888888888877642 25789999999999976432 22222111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 ------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 142 ------------------DYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ------------------HHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=178.16 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=110.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhHHhhhccC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKLDEFLPQA 140 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~~~~~~~~ 140 (267)
..++|+++|++|+|||||+++|.+..+.... .+.+.++......+++..+.+.+|||||+.. +......+++.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 78 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH----EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG 78 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C----CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc----CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence 4579999999999999999999988753221 1122333333344566667899999999987 566677888999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+........ +.......
T Consensus 79 ~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~-------------- 139 (175)
T 2nzj_A 79 SAYVIVYSIADR-GSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARCREVSV--EEGRACAV-------------- 139 (175)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCH--HHHHHHHH--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccccccCH--HHHHHHHH--------------
Confidence 999999999986 678888888877766421 25799999999999976543211 01111111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 140 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 140 ------------------VFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ------------------HHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=8.6e-27 Score=184.03 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=120.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+++|||||++++...+..+++.+|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C---CSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 446799999999999999999999887643332222 33343334444666678999999999999988999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+. ..
T Consensus 96 ~ii~v~d~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~------------- 154 (191)
T 2a5j_A 96 GALLVYDITRR-ETFNHLTSWLEDARQHS---SSNMVIMLIGNKSDLESRRDVKREEGEAF----AR------------- 154 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCCccccCHHHHHHH----HH-------------
Confidence 99999999986 67888888888877642 25789999999999975432 2222111 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 155 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 155 -------------------EHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
No 43
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=9.2e-27 Score=181.24 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=121.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45799999999999999999999877644332222 223333344446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 90 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~-------------- 147 (179)
T 2y8e_A 90 AVVVYDITNT-NSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKA----K-------------- 147 (179)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHH---TTSSEEEEEEECGGGGGGCCSCHHHHHHHH----H--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCcccccCcCCHHHHHHHH----H--------------
Confidence 9999999986 57778888888776542 25789999999999975433 22221111 1
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.++
T Consensus 148 ------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 ------------------ELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp ------------------HHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 123478999999999 9999999998764
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=2.1e-26 Score=179.08 Aligned_cols=165 Identities=14% Similarity=0.177 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI---GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC---SEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce---eeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 356799999999999999999999887643332222 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------- 144 (177)
T 1wms_A 82 CCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---------------- 144 (177)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----------------
Confidence 99999999986 567777777777665321 112678999999999997332 23222221111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ +++++++|.+.+
T Consensus 145 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 -------------------NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp -------------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
No 45
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=183.05 Aligned_cols=162 Identities=18% Similarity=0.275 Sum_probs=122.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.... .++..........+++..+.+.+|||||+.++...+..+++.+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 456689999999999999999999987754332 2222322223334466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 87 ~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------ 147 (206)
T 2bov_A 87 EGFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRA----E------------ 147 (206)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccccccccHHHHHHHH----H------------
Confidence 999999999987 678888888888876532 25799999999999976432 22222211 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 148 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 148 --------------------QWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp --------------------HHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113469999999999 999999998764
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=1.3e-26 Score=181.91 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=120.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI---GVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS---EEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 345799999999999999999999887644332222 22333333344566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... ..+..+.. .
T Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 143 (186)
T 2bme_A 85 GALLVYDITSR-ETYNALTNWLTDARMLA---SQNIVIILCGNKKDLDADREVTFLEASRFA----Q------------- 143 (186)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999986 67777888887766542 26789999999999965432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 144 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 144 -------------------ENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 47
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.94 E-value=1.2e-26 Score=182.85 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=121.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC---CCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce---eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45799999999999999999999987644333322 233333333445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+|+|+|+++. .+++....|+..+.... ..+.|+++|+||+|+..... .++.. +...
T Consensus 98 ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~-------------- 155 (189)
T 2gf9_A 98 FLLMYDIANQ-ESFAAVQDWATQIKTYS---WDNAQVILVGNKCDLEDERVVPAEDGR----RLAD-------------- 155 (189)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHH----HHHH--------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccccccCCCHHHHH----HHHH--------------
Confidence 9999999986 57777888887776642 25789999999999975432 22211 1111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 156 ------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 156 ------------------DLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112479999999999 999999998764
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=183.72 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=120.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++ .+.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITT---IGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTT---BSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCC---ceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 45689999999999999999999988754322222 233344444444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++..+..|+..+.... .+.|+++|+||+|+...... .+..+. ..
T Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~------------- 141 (181)
T 3tw8_B 84 GVIVVYDVTSA-ESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKF----AG------------- 141 (181)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHH----HH-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHH----HH-------------
Confidence 99999999987 67888888888887642 57899999999998764422 211111 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 142 -------------------QMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------------HHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998764
No 49
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=6.9e-27 Score=184.13 Aligned_cols=162 Identities=22% Similarity=0.364 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.++|+++|++|+|||||++++.++.+.. ..++.. +.......+ .+.+++|||||+++++..+..+++.+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 91 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-----TVPTVG-VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTD 91 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-----ECSSTT-CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-----cCCCCc-eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCC
Confidence 578899999999999999999998876532 222222 111112222 468999999999999998899999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++++|+|++++ .++.....|+..++.... ..+.|+++|+||+|+......+++.+.+.. .
T Consensus 92 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~---------- 151 (189)
T 2x77_A 92 AVIYVVDSTDR-DRMGVAKHELYALLDEDE--LRKSLLLIFANKQDLPDAASEAEIAEQLGV-------S---------- 151 (189)
T ss_dssp EEEEEEETTCC-TTHHHHHHHHHHHHTCST--TTTCEEEEEEECTTSTTCCCHHHHHHHTTG-------G----------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhhhh--cCCCeEEEEEECCCCcCCCCHHHHHHHhCh-------h----------
Confidence 99999999987 678889999988887532 257899999999999876554333221110 0
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ...++.++++||++|+ ++++++||.+.+
T Consensus 152 -------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 -------------SI-MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp -------------GC-CSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------hc-cCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 00 0234589999999999 999999998765
No 50
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=182.19 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=121.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|++..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI---GVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS---SEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 445799999999999999999999987643332222 22333333334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 100 ~vi~v~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 158 (193)
T 2oil_A 100 GALLVFDLTKH-QTYAVVERWLKELYDHA---EATIVVMLVGNKSDLSQAREVPTEEARMFA----E------------- 158 (193)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHTTS---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECCCcccccccCHHHHHHHH----H-------------
Confidence 99999999986 56777788888877642 36789999999999975432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 159 -------------------NNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998754
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=1.1e-26 Score=183.14 Aligned_cols=163 Identities=19% Similarity=0.322 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch-hhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR-PKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~~~~~~ 140 (267)
.+.++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++. ..+..+++.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI---GVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC---SCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc---ceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 456899999999999999999999887654333322 223333344445666789999999999888 7889999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+. .
T Consensus 95 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~---~------------ 155 (189)
T 1z06_A 95 HAVVFVYDMTNM-ASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA---D------------ 155 (189)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGGGCCSCHHHHH-HHH---H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccceeCHHHHH-HHH---H------------
Confidence 999999999986 677788888888776532 36799999999999975432 22111 111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccC---c-chhHHHHHHhhcC
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG---E-ISQVEQFIREQVK 266 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++| + +++++++|.+.++
T Consensus 156 --------------------~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 --------------------THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp --------------------HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred --------------------HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 12346899999999 8 9999999988764
No 52
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.94 E-value=1.2e-26 Score=181.24 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+++|||||++++...+..+++.+|+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 5679999999999999999999987653332 233332223344446667789999999999998889999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 81 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 139 (181)
T 3t5g_A 81 YILVYSVTSI-KSFEVIKVIHGKLLDMVG--KVQIPIMLVGNKKDLHMERVISYEEGKALAE------------------ 139 (181)
T ss_dssp EEEEEETTCH-HHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchhcceecHHHHHHHHH------------------
Confidence 9999999987 678888888888876532 25789999999999965433 222221111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 140 ------------------SWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp ------------------HTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ------------------HhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 53
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=3.3e-26 Score=178.38 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=112.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.+||+++|++|||||||+++|+++.+.. . .++..+.......+++..+.+++|||||+++ ..+++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-L----EKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C----SSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-c----CCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 456899999999999999999999987643 2 2223333333344466678899999999886 46788999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC--CC--CHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT--AH--TKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~--~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
++++|||+++. .++..+..|+..+.........+.|+++|+||+|+.. .. ..++..+.. ..
T Consensus 75 ~~ilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~---------- 139 (178)
T 2iwr_A 75 AVIFVFSLEDE-NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX----AD---------- 139 (178)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH----HH----------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH----Hh----------
Confidence 99999999987 6788887765443322111125789999999999942 21 222222111 11
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 140 ---------------------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 140 ---------------------MKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ---------------------HSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ---------------------hcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 124679999999999 999999998764
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=2.3e-26 Score=180.20 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|.+..+.... .++...........++..+.+.+|||||+.++...+..+++.+|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 45689999999999999999999987753322 22222222233334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 92 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------- 151 (187)
T 2a9k_A 92 GFLCVFSITEM-ESFAATADFREQILRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----------------- 151 (187)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccCccCHHHHHHHHH-----------------
Confidence 99999999986 678888888888776432 25789999999999976432 222222111
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 152 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 -------------------QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp -------------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=1e-26 Score=179.19 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=120.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++.......++..+.+.+|||||+.++...+..+++.+|
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 79 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI---GVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 79 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC---SSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce---EEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCC
Confidence 356799999999999999999999887644333322 22333333334566678999999999999888999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|+|+++. .+++....|+..+.... .+.|+++|+||+|+..... .++..+. ..
T Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~------------- 137 (168)
T 1z2a_A 80 ACVLVFSTTDR-ESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGL----AK------------- 137 (168)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHH----HH-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHH----HH-------------
Confidence 99999999986 56778888888776642 5789999999999975432 2222211 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 -------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 -------------------RLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp -------------------HHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 113478999999999 999999998764
No 56
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=2.2e-26 Score=182.01 Aligned_cols=163 Identities=24% Similarity=0.233 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeee-------ecccc-ceeEeecc-cCCCccccEEEEeCCCCCCchhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-------MEPNE-DTFVLHSE-STKGKIKPVHLVDVPGHSRLRPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~-------~~~~~-~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~~ 132 (267)
...+||+++|++|||||||++.+.+... ....++ ..++. .++..... .+++..+.+++|||||+++++..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4568999999999999999987766432 221110 11111 11111122 44666788999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCCC-----CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEF-----LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+..+++.+|++|+|||++++ ..++..+..|+.++.. ...+.|+++|+||+|+......++..+.++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~----~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL----TLDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC----CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc----ccCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999842 1345566666666522 237899999999999987655544333222
Q ss_pred HHhhhhccccccccccccCCCCCCCccccccccee-EEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++ .++++||++|+ ++++++||.+.+
T Consensus 162 -------------------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 -------------------------------PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------------------------TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------------------------hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 1223 78999999999 999999998764
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.94 E-value=2e-26 Score=177.87 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-hHHhhhccCCE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-KLDEFLPQAAG 142 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~~d~ 142 (267)
.+||+++|++|+|||||+++|.+..+......+ .+.+.......+++..+.+.+|||||+.++.. ....+++.+|+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME---NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC---CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 368999999999999999999876543222221 12333333334567678899999999998876 56677899999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
+++|+|+++. .+++....|+..+..... ..+.|+++|+||+|+..... .++..+..+
T Consensus 79 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------------------ 137 (169)
T 3q85_A 79 FLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRHLAG------------------ 137 (169)
T ss_dssp EEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------------------
T ss_pred EEEEEECCCh-HHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhhcccCCHHHHHHHHH------------------
Confidence 9999999986 678888899988877532 24799999999999974432 222211111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 138 ------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 ------------------TLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998764
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.94 E-value=1.9e-26 Score=184.19 Aligned_cols=161 Identities=20% Similarity=0.319 Sum_probs=122.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI---GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS---CCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 345799999999999999999999987654433322 33343334444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 83 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~------------- 141 (206)
T 2bcg_Y 83 GIIIVYDVTDQ-ESFNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA----D------------- 141 (206)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTTCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHHHH----H-------------
Confidence 99999999986 67888888888776542 25789999999999976432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 142 -------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 142 -------------------ANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp -------------------HTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=4.1e-26 Score=181.27 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCcc--------------------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKI-------------------------- 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 115 (267)
...++|+++|++|+|||||+++|++..+.....++.. .++......+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG---ASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS---CEEEEEEEETTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc---ceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 4678999999999999999999999876543333221 22222222222222
Q ss_pred -----------ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 116 -----------KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 116 -----------~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
..+.+|||||++++...+..+++.+|++++|+|++++ .++.....|+..+... .+.|+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~-~s~~~~~~~~~~i~~~-----~~~piilv~N 155 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS-NTLDRAKTWVNQLKIS-----SNYIIILVAN 155 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHH-----SCCEEEEEEE
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHhh-----CCCcEEEEEE
Confidence 6899999999999999999999999999999999986 6778888888888764 3489999999
Q ss_pred cCCCCCC-CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 185 KTDKVTA-HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 185 K~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
|+|+... ...++..+.++ ..++.++++||++|+ +++++++|.
T Consensus 156 K~D~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQ------------------------------------DNNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHH------------------------------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHH------------------------------------HcCCcEEEEecCCCCCHHHHHHHHH
Confidence 9994221 22333322222 123479999999999 999999998
Q ss_pred hhc
Q 024474 263 EQV 265 (267)
Q Consensus 263 ~~~ 265 (267)
+.+
T Consensus 200 ~~~ 202 (208)
T 3clv_A 200 EEI 202 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 60
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=4.8e-27 Score=185.87 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|+|||||+++|.++.+.....++. ..........++..+.+++|||||++++...+..+++.+
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----FENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----eeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 4567899999999999999999999987644333322 222222334466677899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+..........+...+....
T Consensus 96 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------ 158 (194)
T 3reg_A 96 DVVLLCFAVNNR-TSFDNISTKWEPEIKHY----IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------------ 158 (194)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------------
Confidence 999999999987 677776 4555555442 2579999999999997532111111122221111
Q ss_pred ccccccCCCCCCCcccccccceeE-EEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVS-VAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.++. ++++||++|+ +++++++|.+.+
T Consensus 159 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 159 --------------------LGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp --------------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 1123 8999999999 999999998764
No 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=3.1e-26 Score=175.73 Aligned_cols=160 Identities=15% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|+|||||++++.++.+..... ++...........++..+.+.+|||||+.++...+..+++.+|++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~ 78 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD----PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 78 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccC----CccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEE
Confidence 4689999999999999999999876543222 222222223333456667899999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
++|+|+++. .++.....|+..+..... ..+.|+++|+||+|+.......+..+.+. .
T Consensus 79 i~v~d~~~~-~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---~----------------- 135 (166)
T 2ce2_X 79 LCVFAINNT-KSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLA---R----------------- 135 (166)
T ss_dssp EEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHH---H-----------------
T ss_pred EEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHH---H-----------------
Confidence 999999986 677778888877765421 24799999999999976332221111111 1
Q ss_pred ccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ ++++++||.+.+
T Consensus 136 ---------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 136 ---------------SYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------------HHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------------HcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998765
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=183.14 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV---GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCT---TEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcc---ceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 446789999999999999999999877543322221 23344444444666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+...... ++..+ +. .
T Consensus 101 ~iilV~D~~~~-~s~~~~~~~~~~i~~~~---~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~---~------------- 159 (192)
T 2il1_A 101 GIILVYDITKK-ETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCETDREITRQQGEK-FA---Q------------- 159 (192)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHH-HH---H-------------
Confidence 99999999986 57777777776665432 257999999999999754322 21111 11 0
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+..++++||++|+ +++++++|.+.+
T Consensus 160 ------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 160 ------------------QITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp ------------------TSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------hcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0124578999999999 999999998764
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=2.5e-26 Score=179.26 Aligned_cols=166 Identities=16% Similarity=0.226 Sum_probs=109.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCC-CccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTK-GKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
....++|+++|++|+|||||+++|.+..+.....++. +.++......++ +..+.+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 81 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI---GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG 81 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C---CCSCEEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc---ceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhc
Confidence 3467899999999999999999999987654333332 222333333333 445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC---CHHHHHHHHHHHHHHHHhhhhcc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH---TKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+|++|+|+|+++. .+++....|+..+..... ....+.|+++|+||+|+.... ..++..+..+ .
T Consensus 82 ~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~-------- 148 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----S-------- 148 (182)
T ss_dssp CCEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----H--------
T ss_pred CCEEEEEEECCCh-HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----h--------
Confidence 9999999999986 677788888877765321 112678999999999995432 1222211111 0
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++++++|.+.+
T Consensus 149 -----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----------------------LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -----------------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=8.6e-27 Score=181.47 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=117.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCC-ccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKG-KIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
..+.++|+++|++|+|||||+++|.++.+.....++. +.++......+++ ..+.+++|||||++.+...+..+++.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 79 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYG 79 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTT---TSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCce---eEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhh
Confidence 3466899999999999999999999887643222222 2233333333333 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+|++++|+|+++. .+++.+..|+..+...... ..+.| +++|+||+|+..... .++..+.. .
T Consensus 80 ~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~---------- 143 (178)
T 2hxs_A 80 AQGVLLVYDITNY-QSFENLEDWYTVVKKVSEE-SETQPLVALVGNKIDLEHMRTIKPEKHLRFC----Q---------- 143 (178)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHHHH-HTCCCEEEEEEECGGGGGGCSSCHHHHHHHH----H----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEccccccccccCHHHHHHHH----H----------
Confidence 9999999999986 5677777777766542110 02455 899999999975432 22221111 1
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.+.
T Consensus 144 ----------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ----------------------ENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ----------------------HHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred ----------------------HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 123478999999999 9999999988753
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.94 E-value=3.4e-26 Score=180.36 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=119.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeE-eecccCCCc---------cccEEEEeCCCCCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-LHSESTKGK---------IKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~DtpG~~~~~~ 131 (267)
...++|+++|++|+|||||+++|.++.+.....++.. .++. ......++. .+.+.+|||||++++..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG---IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS---EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc---eeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 3457999999999999999999998776443333322 1222 222222332 57899999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~ 209 (267)
.+..+++.+|++|+|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+ ...
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~--- 155 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLEDQRAVKEEEARE----LAE--- 155 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGGGCCSCHHHHHH----HHH---
T ss_pred HHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHH----HHH---
Confidence 999999999999999999986 677777888888776432 25789999999999975432 222221 111
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 156 -----------------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 156 -----------------------------KYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp -----------------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------------------HcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998754
No 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.8e-26 Score=178.93 Aligned_cols=161 Identities=19% Similarity=0.308 Sum_probs=112.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-eeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG-TVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
...++|+++|++|+|||||+++|.+..+... ..++. +.++.......++..+.+++|||||++++...+..+++.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV---GIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCC---SCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCce---eeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 4567999999999999999999998876321 11211 2233333333466667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ + ..
T Consensus 85 d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~-~---~~------------ 144 (180)
T 2g6b_A 85 HALLLLYDVTNK-ASFDNIQAWLTEIHEYA---QHDVALMLLGNKVDSAHERVVKREDGEK-L---AK------------ 144 (180)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECCSTTSCCCSCHHHHHH-H---HH------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC---CCCCcEEEEEECcccCcccccCHHHHHH-H---HH------------
Confidence 999999999986 56777788887776642 26789999999999976442 222211 1 11
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 145 --------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 145 --------------------EYGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp --------------------HHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 112468999999999 999999998764
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=8.3e-27 Score=184.11 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=123.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|+++.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV---GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE---TTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe---eeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 456799999999999999999999887655554444 22333334444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++++|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+ +. .
T Consensus 98 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~---~------------- 156 (191)
T 3dz8_A 98 GFILMYDITNE-ESFNAVQDWATQIKTYS---WDNAQVILVGNKCDMEEERVVPTEKGQL-LA---E------------- 156 (191)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHH-HH---H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCHHHHHH-HH---H-------------
Confidence 99999999986 67888888888776642 26899999999999965432 221111 11 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 157 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 157 -------------------QLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999988764
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=184.87 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=118.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|.+|+|||||+++|.++.+..... ++...........++..+.+.+|||||++++...+..+++.+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD----PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC----CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC----CccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 3577899999999999999999999987653322 222222233444456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .++..+..|+..+..... ..++|+++|+||+|+...... .+..+ +. .
T Consensus 97 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~---~------------ 157 (201)
T 3oes_A 97 HGYVLVYSVTSL-HSFQVIESLYQKLHEGHG--KTRVPVVLVGNKADLSPEREVQAVEGKK-LA---E------------ 157 (201)
T ss_dssp CEEEEEEETTCH-HHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHH-HH---H------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCccccccCHHHHHH-HH---H------------
Confidence 999999999987 678888888888876432 257899999999999754432 21111 11 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 158 --------------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 158 --------------------SWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp --------------------HHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998764
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=2.1e-26 Score=183.88 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|.+|+|||||+++++++.+.....+ +..........+++..+.+.+|||||++++...+..+++.+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC----CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC----eecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 46778999999999999999999998776433322 22333333344566677888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+... ..+.|+++|+||+|+.......+..+.. ....++...
T Consensus 103 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~---------~~~~v~~~~ 168 (204)
T 4gzl_A 103 DVFLICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEK---------KLTPITYPQ 168 (204)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHH----CSSCCEEEEEECHHHHTCHHHHHHHHHT---------TCCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEechhhccchhhhhhhhcc---------ccccccHHH
Confidence 999999999987 6777776 566555543 2578999999999997543221111100 000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+....+...++++||++|+ +++++++|.+.+
T Consensus 169 ~------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 G------------LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp H------------HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred H------------HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 001111233469999999999 999999998764
No 70
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=180.76 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=113.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.... .++...........++..+.+.+|||||++++...+..+++++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY----IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 456789999999999999999999987754332 2333322223333456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+.... .+.|+++|+||+|+....... ..+.+ .....+....
T Consensus 93 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~---~~~~~------~~~~~v~~~~ 158 (201)
T 2q3h_A 93 DIFLLCFSVVSP-SSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLREDVKVL---IELDK------CKEKPVPEEA 158 (201)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGCHHHH---HHHHT------TTCCCCCHHH
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhchhhh---hhhcc------cccccCCHHH
Confidence 999999999986 6777776 5776665532 479999999999997532110 00000 0000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+....+...|+++||++|+ +++++++|.+.+
T Consensus 159 ~------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 159 A------------KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp H------------HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 001110122379999999999 999999998764
No 71
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=7.3e-26 Score=178.98 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=117.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV----FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS----CCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----cceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 45799999999999999999999887644333222 22222233445666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|||+++. .++.... .|+..+.... .+.|+++|+||+|+....... +.+.. . ....++..+.
T Consensus 93 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~- 157 (194)
T 2atx_A 93 FLICFSVVNP-ASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDPKTL---ARLND----M--KEKPICVEQG- 157 (194)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCHHHH---HHHTT----T--TCCCCCHHHH-
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccccch---hhccc----c--cCcccCHHHH-
Confidence 9999999986 6677776 6776666532 478999999999997542110 00000 0 0000000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+....+...|+++||++|+ +++++++|.+.+
T Consensus 158 -----------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 158 -----------QKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp -----------HHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------HHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000000112368999999999 999999998763
No 72
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.94 E-value=5.1e-26 Score=180.39 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=117.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-hHHhhhcc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-KLDEFLPQ 139 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~~~~~ 139 (267)
....++|+++|++|||||||+++|++........ ..++.+.......+++..+.+.+|||+|+..+.. ++..+++.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE---PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT---TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC---CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 3466899999999999999999997643321111 1122233333334567778899999999988765 67788999
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+|++|+|||+++. .++..+..|+.++..... ..++|+++|+||+|+..... .++..+ + ..
T Consensus 97 ~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~-~---a~----------- 158 (195)
T 3cbq_A 97 GDAFLIVFSVTDR-RSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLARSREVSLEEGRH-L---AG----------- 158 (195)
T ss_dssp CSEEEEEEETTCH-HHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTTTCCSCHHHHHH-H---HH-----------
T ss_pred CCEEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccccCCcCHHHHHH-H---HH-----------
Confidence 9999999999986 678888889888776431 25789999999999975432 222211 1 11
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 ---------------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 159 ---------------------TLSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ---------------------HTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------HhCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 112478999999999 999999998764
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=4.6e-26 Score=181.81 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI---GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA 81 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC---SEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc---cceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC
Confidence 3467899999999999999999999887643332222 2333333444566667899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCC-CCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNST-VVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++|+|+|+++. .++..+..|+..+..... ....+.|+++|+||+|+.... ..++..+....
T Consensus 82 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------- 145 (207)
T 1vg8_A 82 DCCVLVFDVTAP-NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--------------- 145 (207)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCH-HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------
Confidence 999999999986 567777788777765321 011478999999999997432 22222111110
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+.++++||++|+ ++++++||.+.+
T Consensus 146 --------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 --------------------KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp --------------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 224568999999999 999999998764
No 74
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.9e-26 Score=183.50 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=115.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|+++.+.....++. +.++......+++..+.+.+|||||+.++...+..+++.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI---GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc---cceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 456899999999999999999999887644333222 22333333444566678999999999888888889999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|+|+++. .++..+..|+..+.... ..+.|+++|+||+|+...... .+..+.. .
T Consensus 100 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 158 (200)
T 2o52_A 100 GALLVYDITSR-ETYNSLAAWLTDARTLA---SPNIVVILCGNKKDLDPEREVTFLEASRFA----Q------------- 158 (200)
T ss_dssp EEEEEEETTCH-HHHHTHHHHHHHHHHHT---CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccccccCHHHHHHHH----H-------------
Confidence 99999999986 67788888888776542 267899999999999654322 2221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 159 -------------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 -------------------ENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp -------------------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123579999999999 999999998764
No 75
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=179.39 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=115.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.+||+++|++|||||||+++|+++.+..... ++..........+++..+.+++|||||+++++.. ..+++.+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ 92 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYD----PNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccC----CCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence 4567899999999999999999999887643332 2222222223334666788999999999988775 6799999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .+++.+..|+..+.........+.|+++|+||+|+..... .++..+.. .
T Consensus 93 ~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------ 155 (187)
T 3c5c_A 93 HAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA----G------------ 155 (187)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH----H------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH----H------------
Confidence 999999999986 6788888888887763210115789999999999965432 22222111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeee-ccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASG-LTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++|| ++|+ +++++++|.+.+
T Consensus 156 --------------------~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 156 --------------------RFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp --------------------HHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred --------------------HcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 12347999999 8999 999999998765
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=2.9e-26 Score=179.10 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||++++.++.+.....++. ..........++..+.+++|||||++++...+..+++.+|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----FDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee----eeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 467899999999999999999999887643332222 2111222334556678899999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH--------HHHHHHHHHHHHHhhh
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF--------IRKQMEKEIDKLRASR 212 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--------~~~~l~~~~~~~~~~~ 212 (267)
++++|+|+++. .+++.+. .|+..+.... .+.|+++|+||+|+........ ..+...+....
T Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 151 (182)
T 3bwd_D 82 VFILAFSLISK-ASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL----- 151 (182)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH-----
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH-----
Confidence 99999999986 6677776 5666655431 4789999999999865422100 00011110010
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|+++||++|+ +++++++|.+.+
T Consensus 152 --------------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 --------------------------IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp --------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 112378999999999 999999998764
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.7e-26 Score=175.12 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=117.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+|+|.++.+.....++... ........++..+.+.+|||||+.++...+..+++.+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 77 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED----TYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 77 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE----EEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccc----cEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCE
Confidence 4579999999999999999999998765443333321 111222335556789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+++|+|+++. .+++....|+..+..... ...+.|+++|+||+|+........ ........
T Consensus 78 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~--~~~~~~~~---------------- 137 (172)
T 2erx_A 78 FILVYSITSR-QSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQS--SEAEALAR---------------- 137 (172)
T ss_dssp EEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCH--HHHHHHHH----------------
T ss_pred EEEEEECcCH-HHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCH--HHHHHHHH----------------
Confidence 9999999986 566666677666554211 114789999999999975433211 01111111
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.++
T Consensus 138 ----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 138 ----------------TWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ----------------HHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ----------------HhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 123478999999999 9999999998764
No 78
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=3.5e-26 Score=184.04 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCc----------cccEEEEeCCCCCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGK----------IKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~DtpG~~~~~~ 131 (267)
...++|+++|++|+|||||+++|++..+.....++.. .++......+++. .+.+++|||||++++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG---IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE---EEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee---EEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 4568999999999999999999999876544333332 1222222222222 57899999999999999
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~ 209 (267)
.+..+++.+|++|+|||+++. .++..+..|+..+..... ..+.|+++|+||+|+..... .++..+. ..
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~--- 169 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAY--CENPDIVLIGNKADLPDQREVNERQAREL----AD--- 169 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCT--TTCCEEEEEEECTTCGGGCCSCHHHHHHH----HH---
T ss_pred HHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcC--cCCCCEEEEEECCccccccccCHHHHHHH----HH---
Confidence 999999999999999999986 667777778776654321 16789999999999975432 2221111 11
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ ++++++||.+.+
T Consensus 170 -----------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 170 -----------------------------KYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -----------------------------HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------------------------HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998764
No 79
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.1e-26 Score=183.60 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=117.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.+..+.....++. +.++......+++..+.+.+|||||++++...+..+++.+|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI---GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---cceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 445799999999999999999999987644333322 22333333444566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
++|+|||+++. .+++.+..|+..+.... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 88 ~vilV~D~~~~-~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~------------- 146 (223)
T 3cpj_B 88 GALIVYDISKS-SSYENCNHWLSELRENA---DDNVAVGLIGNKSDLAHLRAVPTEESKTFA----Q------------- 146 (223)
T ss_dssp EEEEEEC-CCH-HHHHHHHHHHHHHHHHC---C--CEEEEEECCGGGGGGCCSCHHHHHHHH----H-------------
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccccccCHHHHHHHH----H-------------
Confidence 99999999987 67888888888876642 25789999999999975432 22221111 1
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 147 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 147 -------------------ENQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp -------------------HTTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred -------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123578999999999 999999998765
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=7.3e-26 Score=178.30 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=108.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|.+|+|||||+++|.++.+.... .++...........++..+.+.+|||||+.++...+..+++.+|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 35579999999999999999999987654322 22222222233334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|+|+++. .++..+..|+..+..... ..+.|+++|+||+|+.... ..++..+. ...
T Consensus 95 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~------------- 154 (190)
T 3con_A 95 GFLCVFAINNS-KSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPTRTVDTKQAHEL----AKS------------- 154 (190)
T ss_dssp EEEEEEETTCH-HHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHH----HHH-------------
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCcccCCHHHHHHH----HHH-------------
Confidence 99999999986 567777777777655321 2478999999999997632 22222211 111
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.++.++++||++|+ ++++++||.+.+
T Consensus 155 -------------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 155 -------------------YGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp -------------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 12368999999999 999999998754
No 81
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=6.9e-26 Score=177.74 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++.+...+..+++.+|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 80 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----FENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 80 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----ceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCc
Confidence 466899999999999999999999987654333322 1111222334566678999999999999988999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|+|+++. .++..+ ..|+..+... ..+.|+++|+||+|+...... .. .+.. .....++..+.
T Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~--~~-~~~~------~~~~~v~~~~~ 146 (184)
T 1m7b_A 81 AVLICFDISRP-ETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDVST--LV-ELSN------HRQTPVSYDQG 146 (184)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTCEEEEEEECGGGGGCHHH--HH-HHHT------TTCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHH----CCCCCEEEEEEcchhhcchhh--Hh-hhhh------cccCCCCHHHH
Confidence 99999999986 667777 5666665543 257899999999999743110 00 0000 00000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...|+++||+ +|+ +++++++|.+.+
T Consensus 147 ~------------~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 A------------NMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp H------------HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 0 00000123579999999 688 999999998753
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=4.3e-26 Score=182.85 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----FDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS----CCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----ceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 456899999999999999999999887644333322 2222223334666689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHH------HHHHHHHHHHHHHhhhhc
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEF------IRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~------~~~~l~~~~~~~~~~~~~ 214 (267)
++|+|||+++. .++.... .|+..+.... .+.|+++|+||+|+........ ..+...+....
T Consensus 83 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~------- 150 (212)
T 2j0v_A 83 IFVLAFSLISK-ASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ------- 150 (212)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH-------
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH-------
Confidence 99999999986 6677776 6766665532 4789999999999865421100 01111111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+...|+++||++|+ +++++++|.+.+
T Consensus 151 ------------------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 151 ------------------------IGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ------------------------HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------------cCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 112378999999999 999999998764
No 83
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=1.1e-25 Score=181.05 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|||||||+++|+++.+.....++. .........+++..+.+.+|||||++++...+..+++.+|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----FENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----EEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----eeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 467899999999999999999999987654333322 2222233344666789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSA-ASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|||+++. .++.. ...|+..+... ..+.|+++|+||+|+........ . +.. .....++..+.
T Consensus 101 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~~~--~-~~~------~~~~~v~~~~~ 166 (214)
T 3q3j_B 101 AVLLCFDISRP-ETVDSALKKWRTEILDY----CPSTRVLLIGCKTDLRTDLSTLM--E-LSH------QKQAPISYEQG 166 (214)
T ss_dssp EEEEEEETTCT-HHHHHHHTHHHHHHHHH----CTTSEEEEEEECGGGGGCHHHHH--H-HHH------TTCCCCCHHHH
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhccchhhhh--h-hcc------cccCccCHHHH
Confidence 99999999987 67777 57777777664 25899999999999975311000 0 000 00000000000
Q ss_pred cccccCCCCCCCccccccccee-EEEEeeeccCc--chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKV-SVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
. .+.. ..++ .|+++||++|+ +++++++|.+.+
T Consensus 167 ~------------~~~~-~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 167 C------------AIAK-QLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp H------------HHHH-HHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H------------HHHH-HcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 0 0000 1234 79999999997 999999987754
No 84
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=7.6e-26 Score=177.22 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.++.+.....++. .........+++..+.+++|||||++++...+..+++.+|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 79 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS----CCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcc----cceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcE
Confidence 45799999999999999999999877644333322 22222223346667889999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 143 IVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
+++|+|+++. .++.... .|+..+.... .+.|+++|+||+|+....... +.+.. . ....++..+..
T Consensus 80 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~~ 145 (186)
T 1mh1_A 80 SLICFSLVSP-ASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTI---EKLKE----K--KLTPITYPQGL 145 (186)
T ss_dssp EEEEEETTCH-HHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHH---HHHHH----T--TCCCCCHHHHH
T ss_pred EEEEEECCCh-hhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccchhh---hhhcc----c--ccccCCHHHHH
Confidence 9999999986 5677776 5666655431 478999999999987542211 11110 0 00000000000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+....+...++++||++|+ +++++++|.+.+
T Consensus 146 ------------~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 146 ------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 01111122479999999999 999999998875
No 85
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=180.97 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=101.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|++|+|||||+++|+++.+..... ++..........+++..+.+.+|||||++++...+..+++.+|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYT----PTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------C----CCCCEEEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----CccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 456899999999999999999999877543322 2222222233344666678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .++..+. .|+..+... ..++|+++|+||+|+.......+.. .. . ....++..+.
T Consensus 108 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~---~~----~--~~~~v~~~~~ 173 (214)
T 2j1l_A 108 VLLLCFDVTSP-NSFDNIFNRWYPEVNHF----CKKVPIIVVGCKTDLRKDKSLVNKL---RR----N--GLEPVTYHRG 173 (214)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CSSCCEEEEEECGGGGSCHHHHHHH---HH----T--TCCCCCHHHH
T ss_pred EEEEEEECcCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEChhhhccchhhhhh---cc----c--ccCcccHHHH
Confidence 99999999986 6777776 566666543 2578999999999997653221111 00 0 0000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...++++||++|+ +++++++|.+.+
T Consensus 174 ~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 Q------------EMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp H------------HHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred H------------HHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 01110122379999999999 999999998764
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=9.5e-26 Score=178.75 Aligned_cols=164 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.++.+.....++.. .........++..+.+.+|||||+.++...+..+++.+
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 80 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE----DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCC----EEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccc----cceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC
Confidence 34678999999999999999999998876543333322 11122223356667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .+++....|+..+..... ...+.|+++|+||+|+..... .++..+ + ..
T Consensus 81 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~-~---~~------------- 141 (199)
T 2gf0_A 81 HAFILVFSVTSK-QSLEELGPIYKLIVQIKG-SVEDIPVMLVGNKCDETQREVDTREAQA-V---AQ------------- 141 (199)
T ss_dssp SEEEEEEETTCH-HHHHTTHHHHHHHHHHHS-CGGGSCEEEEEECTTCSSCSSCHHHHHH-H---HH-------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCCccccCHHHHHH-H---HH-------------
Confidence 999999999986 566666666555443211 014789999999999975332 221111 1 11
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ ++++++||.+.+.
T Consensus 142 -------------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 -------------------EWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp -------------------HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred -------------------HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 112478999999999 9999999988753
No 87
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2e-25 Score=178.48 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=115.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|++|+|||||+++|.++.+.....+ +...........++..+.+.+|||||++++...+..+++.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP----TVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCC----cccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 34567999999999999999999999876433222 22222222233456667899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++... ..|+..+... ..+.|+++|+||+|+...... .+.+.+ +. ...++..+
T Consensus 98 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~---~~~~~~----~~--~~~v~~~~ 163 (207)
T 2fv8_A 98 DVILMCFSVDSP-DSLENIPEKWVPEVKHF----CPNVPIILVANKKDLRSDEHV---RTELAR----MK--QEPVRTDD 163 (207)
T ss_dssp CEEEEEEETTCH-HHHHHHHHTHHHHHHHH----STTCCEEEEEECGGGGGCHHH---HHHHHH----TT--CCCCCHHH
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEEchhhhccccc---hhhhhh----cc--cCCCCHHH
Confidence 999999999986 567777 4555555442 257899999999999754221 111111 00 00000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...++++||++|+ +++++++|.+.+
T Consensus 164 ~~------------~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 164 GR------------AMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 01111122378999999999 999999998763
No 88
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=1e-26 Score=187.79 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=120.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+||+++|.+|||||||+++++.+.+.....++. +.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL---GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTT---TEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 3456899999999999999999977655433222222 2233333334456668899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .++..+..|+..+.... .++|+++|+||+|+.......+..+
T Consensus 89 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~--------------------- 142 (221)
T 3gj0_A 89 QCAIIMFDVTSR-VTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIV--------------------- 142 (221)
T ss_dssp CEEEEEEETTCH-HHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSCGGGCC---------------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhC----CCCCEEEEEECCccccccccHHHHH---------------------
Confidence 999999999986 67888888888887752 5789999999999975432111000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.. ..++.|+++||++|+ ++++++||.+.+
T Consensus 143 --------------~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 143 --------------FHR-KKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp --------------HHH-HHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred --------------HHH-HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 224579999999999 999999998764
No 89
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3.2e-25 Score=177.79 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~ 140 (267)
...+||+++|.+|||||||+|+|++.... ......+++.++......+++..+.+.+|||+|... ++.....+++.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~--~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDS--MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCT--TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 45689999999999999999999974321 111122233344344445567777889999999876 455566778899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|||+++. .+++.+..|+..+..... ..++|+++|+||+|+...+..... .......
T Consensus 113 ~~~ilVydvt~~-~sf~~~~~~~~~l~~~~~--~~~~piilVgNK~DL~~~r~v~~~--e~~~~a~-------------- 173 (211)
T 2g3y_A 113 DAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRCREVSVS--EGRACAV-------------- 173 (211)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHTSGG--GTTSCEEEEEECTTCGGGCCSCHH--HHHHHHH--------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHhC--CCCCcEEEEEEChHHhcCceEeHH--HHHHHHH--------------
Confidence 999999999986 678888888877765321 257999999999999754322110 0000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.|+++||++|+ +++++++|.+.+
T Consensus 174 ------------------~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 174 ------------------VFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ------------------HHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123479999999999 999999998754
No 90
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.2e-25 Score=176.61 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=118.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+..... ++..........+++..+.+.+|||||+.+ ...+..+++.+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 4567899999999999999999999987643322 222222222334466668899999999998 77888999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
|++++|||+++. .+++.+..|+..+..... ..+.|+++|+||+|+..... .++..+.. .
T Consensus 100 d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~------------ 160 (196)
T 2atv_A 100 EGFVLVYDITDR-GSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLA----T------------ 160 (196)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHH----H------------
T ss_pred CEEEEEEECcCH-HHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccccccCHHHHHHHH----H------------
Confidence 999999999986 677778888777765321 25789999999999976432 22221111 1
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc--chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE--ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--i~~l~~~l~~~~ 265 (267)
..++.++++||++|+ +++++++|.+.+
T Consensus 161 --------------------~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 --------------------ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp --------------------HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred --------------------HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 113479999999996 999999998764
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=1.8e-25 Score=177.89 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=116.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|.+|+|||||+++|.++.+.....++. +..+. ....+++..+.+.+|||||++++...+..+++.+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS---CCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc---cceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 456799999999999999999999987654333322 11221 12334566678999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++++|||+++. .++... ..|+..+... ..+.|+++|+||+|+....... +.+.+ . ....++..+.
T Consensus 99 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~---~~~~~----~--~~~~v~~~~~ 164 (201)
T 2gco_A 99 VILMCFSIDSP-DSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRQDEHTR---RELAK----M--KQEPVRSEEG 164 (201)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----STTCCEEEEEECGGGTTCHHHH---HHHHT----T--TCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHh----CCCCCEEEEEecHHhhcCccch---hhhcc----c--ccCcCCHHHH
Confidence 99999999986 567777 4555544442 2578999999999997542211 11110 0 0000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...++++||++|+ +++++++|.+.+
T Consensus 165 ~------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 165 R------------DMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp H------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H------------HHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0 01111122378999999999 999999998763
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=7.6e-26 Score=180.46 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccCCCc--cccEEEEeCCCCCCchhhHHhhhc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSESTKGK--IKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
..++|+++|++|+|||||+++|.+. .+.....++. +.++......+++. .+.+.+|||||++++...+..+++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS---GVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc---ceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 4579999999999999999999987 5432222222 11233333334554 678999999999999999999999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC-CCC--HHHHHHHHHHHHHHHHhhhhcc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT-AHT--KEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~--~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
.+|++|+|+|+++. .++..+..|+..+.........+.|+++|+||+|+.. ... .++..+.. .
T Consensus 96 ~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~----~--------- 161 (208)
T 2yc2_C 96 GVYYAILVFDVSSM-ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA----T--------- 161 (208)
T ss_dssp CCCEEEEEEETTCH-HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH----H---------
T ss_pred hCcEEEEEEECCCH-HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH----H---------
Confidence 99999999999987 6788888888888764310015789999999999975 222 22222111 1
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeecc-Cc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLT-GE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++ |+ +++++++|.+.+
T Consensus 162 -----------------------~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 162 -----------------------TNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp -----------------------HTTCEEEECCC-------CHHHHHHHHHH
T ss_pred -----------------------HcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 1125799999999 99 999999998754
No 93
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=2e-25 Score=178.33 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
...+||+++|++|+|||||+++|.+..+.....++.. ..+ .....+++..+.+.+|||||++++...+..+++.+|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~---~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF---ENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 4568999999999999999999999876543333221 112 222334566688999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 142 GIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
++|+|||+++. .++..+ ..|+..+... ..+.|+++|+||+|+...... .. .+.. .....++..+.
T Consensus 102 ~~ilv~D~~~~-~s~~~~~~~~~~~i~~~----~~~~piilv~nK~Dl~~~~~~--~~-~~~~------~~~~~v~~~~~ 167 (205)
T 1gwn_A 102 AVLICFDISRP-ETLDSVLKKWKGEIQEF----CPNTKMLLVGCKSDLRTDVST--LV-ELSN------HRQTPVSYDQG 167 (205)
T ss_dssp EEEEEEETTCH-HHHHHHHHTHHHHHHHH----CTTCEEEEEEECGGGGGCHHH--HH-HHHT------TTCCCCCHHHH
T ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHHH----CCCCCEEEEEechhhccchhh--hh-hhcc------cccCCCCHHHH
Confidence 99999999986 667777 5676666543 257899999999999743110 00 0000 00000000000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeec-cCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGL-TGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~-i~~l~~~l~~~~ 265 (267)
. .+....+...|+++||+ +|+ +++++++|.+.+
T Consensus 168 ~------------~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 A------------NMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp H------------HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 0 00100123579999999 677 999999988753
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=6.6e-26 Score=182.56 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=115.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....+||+++|.+|+|||||+|+|+++.+......+... ..........++..+.+.+|||||++.+...+..+++.+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTE--EEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce--eeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 346789999999999999999999987754322222111 111111222233336899999999999988899999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++|+|+|+++. .++.....|+..+.... ..+.|+++|+||+|+........ +.. ..+
T Consensus 86 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~--~~~----~~~------------ 143 (218)
T 4djt_A 86 SGAILFFDVTSR-ITCQNLARWVKEFQAVV---GNEAPIVVCANKIDIKNRQKISK--KLV----MEV------------ 143 (218)
T ss_dssp SEEEEEEETTCH-HHHHTHHHHHHHHHHHH---CSSSCEEEEEECTTCC----CCH--HHH----HHH------------
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccccccCH--HHH----HHH------------
Confidence 999999999987 67777788877776542 25689999999999975321100 001 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. ..++.++++||++|+ +++++++|.+.+
T Consensus 144 ---------------~~-~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 144 ---------------LK-GKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp ---------------TT-TCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred ---------------HH-HcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 234579999999999 999999998764
No 95
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.2e-25 Score=189.40 Aligned_cols=162 Identities=22% Similarity=0.390 Sum_probs=118.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|.+|+|||||+++|.++.+... . ++.. ..... +....+.+++|||||++.+...+..+++.+|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~----~-pT~~-~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----I-PTIG-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE----E-EETT-EEEEE--EEETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc----c-cccc-eEEEE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445999999999999999999998775321 1 2111 11111 22344789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. .++.....++..++.... ..++|+++|+||+|+......+++.+.+.. .
T Consensus 236 vilV~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~i~~~~~~-------~----------- 294 (329)
T 3o47_A 236 LIFVVDSNDR-ERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNAMNAAEITDKLGL-------H----------- 294 (329)
T ss_dssp EEEEEETTCS-SSHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTCCCHHHHHHHHTC-------T-----------
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHhhhc--cCCCeEEEEEECccCCcccCHHHHHHHhch-------h-----------
Confidence 9999999987 789999999988887532 258999999999999877665443332210 0
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+. ...++.++++||++|+ +++++++|.+.+.
T Consensus 295 ------------~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 295 ------------SL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ------------TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ------------hh-hcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 00 0245689999999999 9999999988764
No 96
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=4.1e-27 Score=187.12 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=113.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
..+||+++|++|+|||||+|+|+++.+.....++. +.++.......++..+.+.+|||||++++...+..+++.+|+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI---GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHH---CCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---cceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 45799999999999999999999877643322222 333444444446666789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+|+++. .+++.+..|+..+.... ..+.|+++|+||+|+........ ...
T Consensus 109 ~i~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~p~ilv~nK~Dl~~~~~v~~---------------------~~~-- 161 (199)
T 3l0i_B 109 IIVVYDVTDQ-ESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTTKKVVDY---------------------TTA-- 161 (199)
T ss_dssp EEECC-CCCS-HHHHHHHHHHHHHHSCC----CCSEEEEC-CCSSCC--CCCCS---------------------CC---
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHhc---cCCCCEEEEEECccCCccccCCH---------------------HHH--
Confidence 9999999987 77888888888876642 25799999999999965422100 000
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+.. ..++.++++||++|+ ++++++||.+.+.
T Consensus 162 ----------~~~~~-~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 162 ----------KEFAD-SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp ----------CHHHH-TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred ----------HHHHH-HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00000 223568999999999 9999999988764
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=1.4e-24 Score=172.16 Aligned_cols=173 Identities=13% Similarity=0.157 Sum_probs=111.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhH---Hhhh
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKL---DEFL 137 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~ 137 (267)
..+.+||+++|++|||||||++++.+..... .......+........ .++..+.+++|||||++++.... ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDI--SNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEE--CCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeec--cCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 4577899999999999999999988754322 2111222222221111 12455789999999999987776 8999
Q ss_pred ccCCEEEEEEeCCCCC-CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH-HHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEFL-PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE-IDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 215 (267)
+++|++|+|||+++.. .++..+..|+.++... ..+.|+++|+||+|+............+... ...+....
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~--- 166 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG--- 166 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh---
Confidence 9999999999999841 2445556666665432 2689999999999997542211111111111 11110000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ...++.|+++||++ + +++++++|.+.+
T Consensus 167 -------------------~--~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 -------------------L--EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -------------------C--TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -------------------h--hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0 02356899999999 9 999999998764
No 98
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=2.3e-24 Score=167.64 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.+..+.....++... ++.......++ ..+.+|||||++++...+..++..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQ---HIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSST---TCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeE---eeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 357789999999999999999999998765433322211 11111112233 4688999999999998888899999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|+|+++. ........+..+.. .+.|+++|+||+|+... ..+++.+.+. .. .
T Consensus 80 d~~i~v~d~~~~--~~~~~~~~l~~~~~------~~~p~ilv~nK~Dl~~~-~~~~~~~~~~----~~----~------- 135 (178)
T 2lkc_A 80 DIVILVVAADDG--VMPQTVEAINHAKA------ANVPIIVAINKMDKPEA-NPDRVMQELM----EY----N------- 135 (178)
T ss_dssp CEEEEEEETTCC--CCHHHHHHHHHHGG------GSCCEEEEEETTTSSCS-CHHHHHHHHT----TT----T-------
T ss_pred CEEEEEEECCCC--CcHHHHHHHHHHHh------CCCCEEEEEECccCCcC-CHHHHHHHHH----hc----C-------
Confidence 999999999875 23333344443322 57899999999999764 2222221111 00 0
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.........+.++++||++|+ +++++++|.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 136 ------------LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp ------------CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ------------cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 000111234689999999999 999999998653
No 99
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=7.4e-25 Score=197.38 Aligned_cols=163 Identities=22% Similarity=0.362 Sum_probs=123.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
.+.++|+++|.+|+|||||+|+|+++.+.. ..++. . ...... ....+.+.+|||||++.++..+..+++.+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~----~-~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTV----G-FNVETV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS----S-EEEEEE--ESSSCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCcc----c-eeEEEE--EeCCEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 456899999999999999999999887432 22222 1 222222 234478999999999999999999999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|||+++. .++.....|+.+++.... ..++|+++|+||+|+.......++.+.+..
T Consensus 392 ~~i~V~D~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------------------ 450 (497)
T 3lvq_E 392 GLIFVVDCADR-DRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLGL------------------ 450 (497)
T ss_dssp EEEEEEETTCG-GGHHHHHHHHHHHHTSGG--GTTCEEEEEEECCSSSSCCCHHHHHHHTTC------------------
T ss_pred EEEEEEECcch-hHHHHHHHHHHHHhhhhh--cCCCcEEEEEECCCCCcCCCHHHHHHHhch------------------
Confidence 99999999987 789999999999887532 268999999999999876554433221110
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. +. ....+.++++||++|+ ++++++||.+.++
T Consensus 451 ----------~--~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 451 ----------T--RI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp ----------T--TC-CSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred ----------h--hh-hcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 00 0235679999999999 9999999998764
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.92 E-value=1.5e-24 Score=171.42 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-chhhHHhhhccC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-LRPKLDEFLPQA 140 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~~~~~~~~ 140 (267)
...+||+++|++|||||||+|+|++.... ......+++.++......+++..+.+.+|||+|... .+.....+++.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDS--MDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCC--C----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCC--cCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 35679999999999999999999964321 111122233344334444567777889999999876 445566788899
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccc
Q 024474 141 AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADV 220 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 220 (267)
|++++|||+++. .+++....|+..+..... ..+.|+++|+||+|+...+.... +.... +..
T Consensus 82 ~~~i~v~dv~~~-~s~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~r~v~~--~~~~~-~a~------------- 142 (192)
T 2cjw_A 82 DAYLIVYSITDR-ASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVRXREVSV--SEGRA-XAV------------- 142 (192)
T ss_dssp SEEEEEEETTCH-HHHHHHHHHHHHHHHHTT--TSCCCEEEEEECTTCGGGCCSCH--HHHHH-HHH-------------
T ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHhhC--CCCCeEEEEEechhhhccccccH--HHHHH-HHH-------------
Confidence 999999999986 678888888776655321 25789999999999965332211 00000 000
Q ss_pred cccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 221 TNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..|+++||++|+ +++++++|.+.+
T Consensus 143 ------------------~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 ------------------VFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ------------------HTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------------HhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 123478999999999 999999998754
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=1.3e-25 Score=176.30 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--CcccceeeeeccccceeEeecccC---CCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTSMEPNEDTFVLHSEST---KGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
.+||+++|++|||||||+++|++. .+.....++. +.++....... ++..+.+.+|||+|++++...+..+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~---g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV---GIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT 78 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------C---SEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceec---cEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHcc
Confidence 469999999999999999999985 2222122221 12222111111 234578999999999988888888999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
++|++++|+|++++..++..+..|+.++.... .+.|+++|+||+|+...... ..........+ .
T Consensus 79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~----~----- 142 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQR---KACMSKITKEL----L----- 142 (184)
T ss_dssp HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHH---HHHHHHHHHHT----T-----
T ss_pred CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhh---HHHHHHHHHHH----H-----
Confidence 99999999999886335777888888876542 47899999999999643221 11111111111 0
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccC-c-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG-E-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~-i~~l~~~l~~~~ 265 (267)
... .+.....++++||++| + +++|++.|.+.+
T Consensus 143 ---~~~------------~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 143 ---NKR------------GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp ---TCT------------TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred ---Hhc------------CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 000 0012235899999999 4 999998887654
No 102
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5.8e-25 Score=195.68 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=114.3
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCc--hHHH----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPP--TQLY----IACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLF 81 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl 81 (267)
.....|++. +.+.++..+||.++.-+ .... +..+...+..+.....+....+++++|+++|.+|+|||||+
T Consensus 171 ~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLl 250 (476)
T 3gee_A 171 VRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLL 250 (476)
T ss_dssp HHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHH
Confidence 334444443 45666777777654322 1111 33333334444433334444567789999999999999999
Q ss_pred HHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHH--------hhhccCCEEEEEEeCCCCC
Q 024474 82 YQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLD--------EFLPQAAGIVFVVDALEFL 153 (267)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~ 153 (267)
|+|++... ..++...+++.+.......+++ +.+.+|||||+.++...++ .+++.+|++++|+|++++
T Consensus 251 n~L~~~~~--a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~- 325 (476)
T 3gee_A 251 NTLLGQER--AIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE- 325 (476)
T ss_dssp HHCC--------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTC-
T ss_pred HHHhCCCC--cccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCC-
Confidence 99998752 1233333334433333333344 6799999999987665443 367899999999999986
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCc
Q 024474 154 PNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAF 233 (267)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (267)
.+...... ...++... .+.|+++|+||+|+........ +.+.+ .
T Consensus 326 ~s~~~~~~-~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~----~------------------------- 369 (476)
T 3gee_A 326 RLDDELTE-IRELKAAH----PAAKFLTVANKLDRAANADALI--RAIAD----G------------------------- 369 (476)
T ss_dssp SSGGGHHH-HHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHH----H-------------------------
T ss_pred cchhhhHH-HHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHh----c-------------------------
Confidence 44432212 22222221 3689999999999976543321 11111 0
Q ss_pred ccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 234 SFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 234 ~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
....++++||++|+ +++|+++|.+.+.
T Consensus 370 ------~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 ------TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 01358999999999 9999999988753
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=8.2e-25 Score=168.71 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEFL 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~~ 137 (267)
.++|+++|++|+|||||+|+|.+..+.....+ ..+..........++ ..+++|||||+.++. .....++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWP---GVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCC---CcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHH
Confidence 46899999999999999999998764322221 111111111111222 579999999998774 3345566
Q ss_pred c--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 P--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+ ++|++++|+|+++. +....|+.++.. .+.|+++|+||+|+..........+.+.+
T Consensus 78 ~~~~~~~~i~v~D~~~~----~~~~~~~~~~~~------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------------ 135 (165)
T 2wji_A 78 INEKPDLVVNIVDATAL----ERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLEK------------ 135 (165)
T ss_dssp HHHCCSEEEEEEETTCH----HHHHHHHHHHHH------TTCCEEEEEECHHHHHHTTCCCCHHHHHH------------
T ss_pred hcCCCCEEEEEecCCch----hHhHHHHHHHHh------cCCCEEEEEEchHhccccChhhHHHHHHH------------
Confidence 5 89999999999873 344556666544 46899999999998532211000011111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+..++++||++|+ +++++++|.+.++
T Consensus 136 -----------------------~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 136 -----------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp -----------------------HHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred -----------------------HhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 112468999999999 9999999998765
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.8e-24 Score=170.85 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
.+.++|+++|++|+|||||+|+|++..+......+... +.... ....+ ..+.+||||| ++.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-t~~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK-TQTLN--FYIIN---DELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEE--EEEET---TTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCc-eeeEE--EEEEC---CcEEEEECCCCCccccCHHHHHHHHH
Confidence 46789999999999999999999987643222222211 11111 11112 2699999999 445556
Q ss_pred hHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+..+++.+ |++++|+|+++. .+.... ++...+.. .+.|+++|+||+|+..........+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~--~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~- 165 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHA-PSNDDV--QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI- 165 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC-CCHHHH--HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-
T ss_pred HHHHHHhhhhcCCEEEEEEECCCC-CCHHHH--HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-
Confidence 677777776 999999999886 333332 22222321 678999999999998765444333333321110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ ++++++||.+.++
T Consensus 166 ------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 ------------------------------DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ------------------------------cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 234579999999999 9999999988764
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.7e-26 Score=182.21 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=117.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
..+.++|+++|++|+|||||+++|.++.+.....++ ..........+++..+.+++|||||++++...+..+++.+
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102 (204)
Confidence 356789999999999999999999987754332222 2222222333456667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|+|+++. .++.... .|+..+... ..+.|+++|+||+|+.......+....... ..+....
T Consensus 103 d~iilv~D~~~~-~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---------~~v~~~~ 168 (204)
T 3th5_A 103 DVFLICFSLVSP-ASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRDDKDTIEKLKEKKL---------TPITYPQ 168 (204)
Confidence 999999999987 5677765 555544432 137899999999999754322111110000 0000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...++++||++|+ +++++++|.+.+
T Consensus 169 ~~------------~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 169 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 00 01111222378999999999 999999998754
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=3e-23 Score=168.34 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=104.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc---------hhh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL---------RPK 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~---------~~~ 132 (267)
.+.++|+++|++|+|||||+|+|++..+. ......++.......... ....+.+|||||+.+. ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~---~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD---VQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE---EECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 45789999999999999999999998753 122222223333222222 2367999999998421 112
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH-HHHHHHHHHHHHHH
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCS--AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE-FIRKQMEKEIDKLR 209 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~l~~~~~~~~ 209 (267)
+..++..+|++|+|+|+++. .++. ....|+..+... ..+.|+++|+||+|+....... ...+.+.+....
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 174 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSV----FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN-- 174 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTC----C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH--
T ss_pred HHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHh----hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh--
Confidence 34457889999999999986 3433 334556555442 1478999999999997654321 111122221111
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+.++++||++|+ +++++++|.+.+
T Consensus 175 ----------------------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 ----------------------------VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ----------------------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0112679999999999 999999998764
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=5.5e-24 Score=165.26 Aligned_cols=154 Identities=20% Similarity=0.328 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh--------HH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK--------LD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--------~~ 134 (267)
+..+|+++|++|+|||||+|+|.+..+. .+....+++.++......+++ ..+.+|||||+.++... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA--IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS--CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence 5679999999999999999999987532 112222223333333333343 46899999998764321 12
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|+++. .++. ...|+..+.... ..++|+++|+||+|+.....
T Consensus 79 ~~~~~ad~~i~v~D~~~~-~s~~-~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~--------------------- 132 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTT-DAVD-PAEIWPEFIARL---PAKLPITVVRNKADITGETL--------------------- 132 (172)
T ss_dssp HHHHTCSEEEEEEETTTC-CCCS-HHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCC---------------------
T ss_pred HHHHhCCEEEEEEECCCC-CCHH-HHHHHHHHHHhc---ccCCCEEEEEECccCCcchh---------------------
Confidence 467899999999999886 3443 345555555432 25789999999999843210
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. +.. .....++++||++|+ +++++++|.+.+.
T Consensus 133 -----------------~--~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 -----------------G--MSE-VNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -----------------E--EEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -----------------h--hhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0 000 124579999999999 9999999988753
No 108
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=7.5e-24 Score=171.01 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------chh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~~ 131 (267)
...++|+++|.+|+|||||+|+|++..... ......+++......... ......+.+|||||+.. +..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-FASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-CTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-eecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 467899999999999999999999876211 111122222222222111 13346899999999644 244
Q ss_pred hHHhhhcc---CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQ---AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
....+++. +|++++|+|+++. +......+...+.. .+.|+++|+||+|+..........+.+.+.+..+
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRP---LTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC---CCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCC---CCHHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 55566666 7889999999875 22333333333332 5789999999999976544433444444433332
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.... ......++++||++|+ +++++++|.+.++
T Consensus 177 ~~~~-------------------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 177 RDAG-------------------------YAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHT-------------------------CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhcc-------------------------cCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 1100 0245689999999999 9999999998765
No 109
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=1.5e-23 Score=165.37 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=105.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
...++|+++|++|+|||||+|+|++..+.. ...+. ..+...... . ....+.+||||| ...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~t~~~~~~--~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTP-GKTRSINFY--L---VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSC-CCCCCEEEE--E---ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCC-CCccCeEEE--E---ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 456799999999999999999999876321 11111 111111111 1 123689999999 344555
Q ss_pred hHHhhhccC---CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQA---AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~~~~~~~---d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 208 (267)
.+..+++.+ |++++|+|+++... . ....+...+.. .+.|+++|+||+|+..........+.+.+....
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~-~--~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~- 164 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQ-D--SDLMMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK- 164 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCC-H--HHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCC-H--HHHHHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh-
Confidence 666677665 99999999987522 1 11122222221 478999999999998665554444444432221
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
...+.++++||++|+ ++++++||.+.++
T Consensus 165 ------------------------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 165 ------------------------------YGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ------------------------------SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------------------------cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 234579999999999 9999999998764
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=1.8e-23 Score=177.10 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=109.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch----------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR---------- 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~---------- 130 (267)
..+...|+++|.+|||||||+|+|++..+.. ++....++......... .+....+.+|||||+.++.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~-~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKN-IPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEE-ETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEe-cCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 3455689999999999999999999987531 11111112221111111 1214689999999997654
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHH
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV-TAHTKEFIRKQMEKEIDKLR 209 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~l~~~~~~~~ 209 (267)
.....+++.+|++++|+|+++. .+......|+..+.. .+.|+++|+||+|+. .........+.+.+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~------~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---- 152 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKP------LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---- 152 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGG------GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----
T ss_pred HHHHHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHh------cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----
Confidence 4566788999999999999986 445555444544432 578999999999997 3333322222222100
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.++++
T Consensus 153 -----------------------------~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 153 -----------------------------PELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp -----------------------------TTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -----------------------------cCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 123468999999999 9999999998875
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=5.7e-24 Score=162.65 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-------chhhHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-------LRPKLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~~~~~~~ 137 (267)
+||+++|++|+|||||++++.+..+.. .....+++..........++ ..+.+|||||+.. +...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV--VADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee--ccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 589999999999999999999876421 11122222222222222233 4789999999887 345566788
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSE 217 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (267)
+.+|++++|+|+++. ......++.+.+.. .+.|+++|+||+|+..... .. .
T Consensus 78 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~------~~----~----------- 128 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAE---LTQADYEVAEYLRR-----KGKPVILVATKVDDPKHEL------YL----G----------- 128 (161)
T ss_dssp TTCSEEEEEEESSSC---CCHHHHHHHHHHHH-----HTCCEEEEEECCCSGGGGG------GC----G-----------
T ss_pred HhCCEEEEEEECCCc---ccHhHHHHHHHHHh-----cCCCEEEEEECcccccchH------hH----H-----------
Confidence 999999999999885 22333444444442 5689999999999875310 00 0
Q ss_pred ccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 218 ADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
. +.. .+...++++||++|+ +++++++|.+.++
T Consensus 129 --------------~--~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 129 --------------P--LYG-LGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp --------------G--GGG-GSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred --------------H--HHh-CCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 0 011 111158999999999 9999999998774
No 112
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2e-23 Score=185.96 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=127.8
Q ss_pred CcchhhhHHH---HHHHHHHHHHhhhcCCch-H-H---HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHH
Q 024474 10 PEGMEQWKKE---LEEWLNRGIEFINQIPPT-Q-L---YIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLF 81 (267)
Q Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl 81 (267)
+.....|+.. +.+.+++.++|.++ -+. . . .+..+...+..+.....+....++.++|+++|.||+|||||+
T Consensus 182 ~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 182 RDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence 3444556544 56667788888775 221 1 1 122233333333322223333345689999999999999999
Q ss_pred HHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC-Cchh--------hHHhhhccCCEEEEEEeCCCC
Q 024474 82 YQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS-RLRP--------KLDEFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~--------~~~~~~~~~d~ii~v~d~~~~ 152 (267)
|+|++.... .++.+++++.+.......+++ ..+.+|||||+. ++.. ....+++.+|++|+|+|++++
T Consensus 261 n~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 261 NRLLNEDRA--IVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP 336 (482)
T ss_dssp HHHHHHTBC--CCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC
T ss_pred HHHHCCCCC--ccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC
Confidence 999987531 233344444433333333343 579999999998 6542 245688999999999999886
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCC
Q 024474 153 LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQA 232 (267)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (267)
.+.+.. ..+ +.+ .+.|+++|+||+|+......+++ .+ +.
T Consensus 337 -~s~~~~-~il-~~l-------~~~piivV~NK~DL~~~~~~~~~----~~----~~----------------------- 375 (482)
T 1xzp_A 337 -LDEEDR-KIL-ERI-------KNKRYLVVINKVDVVEKINEEEI----KN----KL----------------------- 375 (482)
T ss_dssp -CCHHHH-HHH-HHH-------TTSSEEEEEEECSSCCCCCHHHH----HH----HH-----------------------
T ss_pred -CCHHHH-HHH-HHh-------cCCCEEEEEECcccccccCHHHH----HH----Hh-----------------------
Confidence 344332 222 222 36799999999999754332221 11 00
Q ss_pred cccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 233 FSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 233 ~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++|+++|.+.+
T Consensus 376 ------~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 376 ------GTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp ------TCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred ------cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 112358999999999 999999998754
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=2.6e-23 Score=175.08 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---hHHhhhccCCE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---KLDEFLPQAAG 142 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~d~ 142 (267)
||+++|+.|||||||++++.++.++. ...++.++.+.-... + +..+++++|||||+++|+. ....|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664322 122222322211111 1 2347899999999999964 46889999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|||+++. +.....|+.+++........++|+++|+||+|+.......+..+.+.....+ .
T Consensus 76 ~IlV~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~---~----------- 138 (331)
T 3r7w_B 76 LVYVIDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE---E----------- 138 (331)
T ss_dssp EEEECCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH---T-----------
T ss_pred EEEEEECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH---H-----------
Confidence 9999999984 3444444443332110012679999999999997543322222222221111 0
Q ss_pred cccCCCCCCCcccccc---cceeEEEEeeeccCcchhHHHHHHhhcCC
Q 024474 223 DFTLGIPGQAFSFSQC---HNKVSVAEASGLTGEISQVEQFIREQVKP 267 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~i~~l~~~l~~~~~p 267 (267)
+.+. ..++.|+++||+++.+.+.+..|.+.+.|
T Consensus 139 ------------la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 139 ------------LLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIP 174 (331)
T ss_dssp ------------TSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTSST
T ss_pred ------------HHhhcccccCceEEEeccCCCcHHHHHHHHHHHHHh
Confidence 1111 24678999999985588888888776654
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=5.1e-23 Score=174.21 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-----hhhHHhhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-----RPKLDEFL 137 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-----~~~~~~~~ 137 (267)
..+||+++|++|||||||+++++++..... .....++ .........+++ .+.+++|||||++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~T-i~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGAT-IDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCC-CSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCc-cceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 457999999999999999999988732110 1112222 112222222223 478999999999988 67788899
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHH---HHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEY---LYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+++|++|+|||+++. .+++.+..| +..+... ..++|+++|+||+|+..........+.....+.++..
T Consensus 79 ~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~----~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~---- 149 (307)
T 3r7w_A 79 QMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKY----SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS---- 149 (307)
T ss_dssp TTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHH----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHh----CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH----
Confidence 999999999999987 667776555 4444332 2579999999999997532222111122222222210
Q ss_pred cccccccccccCCCCCCCcccccccc--eeEEEEeeeccCcchhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHN--KVSVAEASGLTGEISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~i~~l~~~l~~~~ 265 (267)
..+ ++.++++||+++.+.+++..+...+
T Consensus 150 -----------------------~~g~~~~~~~~tSa~~~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 150 -----------------------EFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179 (307)
T ss_dssp -----------------------TTTCCSCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred -----------------------HcCCCCeEEEEeeecCChHHHHHHHHHHHH
Confidence 011 3689999999955766666665544
No 115
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=2.9e-23 Score=177.30 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=117.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQA 140 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 140 (267)
....++|+++|.+|+|||||+++++++.+.....++ +.........+++..+.+.+|||||++.+...+..+++.+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----VFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC----SEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc----ccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC
Confidence 356789999999999999999999987764433222 2222223334466667888999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 141 AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 141 d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
|++++|||+++. .++.... .|+..+.... .++|+++|+||+|+.......+ .+.. . ....++...
T Consensus 228 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~---~~~~----~--~~~~v~~~~ 293 (332)
T 2wkq_A 228 DVFLICFSLVSP-ASFHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIE---KLKE----K--KLTPITYPQ 293 (332)
T ss_dssp SEEEEEEETTCH-HHHHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHH---HHHH----T--TCCCCCHHH
T ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhh---hccc----c--ccccccHHH
Confidence 999999999986 5677765 5655555431 4889999999999865421111 1100 0 000000000
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .+....+...|+++||++|+ +++++++|.+.+
T Consensus 294 ~~------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GL------------AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HH------------HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------------HHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 01111122379999999999 999999998763
No 116
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=4.4e-24 Score=189.36 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=118.0
Q ss_pred cchhhhHHH---HHHHHHHHHHhhhcCCch-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHH
Q 024474 11 EGMEQWKKE---LEEWLNRGIEFINQIPPT-----QLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFY 82 (267)
Q Consensus 11 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~ 82 (267)
.....|++. +.+.+++.+||.++.... ...+..+...+..+.....+....+.+++|+++|++|+|||||+|
T Consensus 163 ~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln 242 (462)
T 3geh_A 163 HPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLN 242 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHH
Confidence 334455444 677888899986643221 111333333333333222333344567899999999999999999
Q ss_pred HHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHh--------hhccCCEEEEEEeCCCCCC
Q 024474 83 QLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDE--------FLPQAAGIVFVVDALEFLP 154 (267)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~~ 154 (267)
+|++..+. .++...+++.++......+++ ..+.+|||||+.++....+. +++.+|++++|+|++++ .
T Consensus 243 ~L~~~~~a--~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~ 317 (462)
T 3geh_A 243 AWSQSDRA--IVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG-W 317 (462)
T ss_dssp HHHHHHBS--CCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTC-S
T ss_pred HHhCCCcc--cccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC-C
Confidence 99986431 222233333333222222333 57899999998776554333 57889999999999986 2
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcc
Q 024474 155 NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFS 234 (267)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (267)
+... ..++..+ ...|+++|+||+|+....... .
T Consensus 318 ~~~~-~~i~~~l--------~~~piivV~NK~Dl~~~~~~~-----------------------~--------------- 350 (462)
T 3geh_A 318 TTGD-QEIYEQV--------KHRPLILVMNKIDLVEKQLIT-----------------------S--------------- 350 (462)
T ss_dssp CHHH-HHHHHHH--------TTSCEEEEEECTTSSCGGGST-----------------------T---------------
T ss_pred CHHH-HHHHHhc--------cCCcEEEEEECCCCCcchhhH-----------------------H---------------
Confidence 2222 3333322 336999999999997542210 0
Q ss_pred cccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 235 FSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 235 ~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.....++++||++|+ +++|+++|.+.+
T Consensus 351 ~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 351 LEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 0111134468999999999 999999998865
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.9e-23 Score=163.99 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~ 136 (267)
+.++|+++|++|||||||+++|++..+. ....+..+..........+ +..+.+|||||+.++. .....+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~---~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE---EEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---ccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 4579999999999999999999986542 2222222222222222222 3689999999998874 345566
Q ss_pred hc--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 LP--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
++ .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+..........+.+. .
T Consensus 81 ~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~------~~~piilv~nK~Dl~~~~~~~~~~~~~~---~-------- 139 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA----LERNLYLTLQLME------MGANLLLALNKMDLAKSLGIEIDVDKLE---K-------- 139 (188)
T ss_dssp HHHHCCSEEEEEEEGGG----HHHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCCCHHHHH---H--------
T ss_pred HhccCCCEEEEEecchh----HHHHHHHHHHHHh------cCCCEEEEEEhhhccccccchHHHHHHH---H--------
Confidence 64 4999999999875 4556667666654 5789999999999854321110011111 1
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..++.++++||++|+ +++++++|.+.+.
T Consensus 140 ------------------------~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 140 ------------------------ILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp ------------------------HHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred ------------------------HhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 112468999999998 9999999987653
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=2e-23 Score=172.10 Aligned_cols=150 Identities=18% Similarity=0.151 Sum_probs=102.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------hHH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP----------KLD 134 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----------~~~ 134 (267)
++|+++|.+|||||||+|+|++... .+...++.+.+........++ ..+.+|||||+.++.+ ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~---~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~ 76 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ---RVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAA 76 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE---EEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHH
Confidence 5899999999999999999999764 233333333333333333333 4799999999987764 345
Q ss_pred hhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 135 EFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 135 ~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
.++ +.+|++|+|+|+++. +....+...+. ..+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~d~vi~VvDas~~----~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~--------- 137 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACHL----ERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISIDTEKLES--------- 137 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGGH----HHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEECHHHHHH---------
T ss_pred HHHhhCCCCEEEEEeeCCCc----hhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHHHHHHHHH---------
Confidence 566 889999999999873 22223333332 257899999999998643321111111111
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+++++++||++|+ +++|+++|.+.
T Consensus 138 --------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 138 --------------------------LLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp --------------------------HHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred --------------------------HcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 123579999999999 99999999874
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.5e-22 Score=170.60 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--------chhhHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--------LRPKLD 134 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--------~~~~~~ 134 (267)
+..+|+++|.+|+|||||+|+|++..+.. ++..+.++....... .......+++|||||+.+ +.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 34579999999999999999999987531 111111122111111 122346899999999887 344566
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++++|+|++++ +.....|+.+.+... ..+.|+++|+||+|+..... .+ .+.+..+
T Consensus 82 ~~l~~ad~il~VvD~~~~---~~~~~~~i~~~l~~~---~~~~p~ilV~NK~Dl~~~~~--~~----~~~~~~~------ 143 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHP---PTPEDELVARALKPL---VGKVPILLVGNKLDAAKYPE--EA----MKAYHEL------ 143 (301)
T ss_dssp HHTSSCSEEEEEEETTSC---CCHHHHHHHHHHGGG---TTTSCEEEEEECGGGCSSHH--HH----HHHHHHT------
T ss_pred HHHhcCCEEEEEEECCCC---CChHHHHHHHHHHhh---cCCCCEEEEEECcccCCchH--HH----HHHHHHh------
Confidence 788999999999999875 233345665555431 13789999999999975422 11 1111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++++++|.+.++
T Consensus 144 ------------------------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 ------------------------LPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp ------------------------STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred ------------------------cCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 011258999999999 9999999998764
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=3.8e-23 Score=170.69 Aligned_cols=153 Identities=23% Similarity=0.283 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+.++|+++|++|+|||||+|+|++..+. +...++.+.... ...+......+.+|||||+..+.. ....+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~---~~~~pg~tv~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY---VANWPGVTVEKK--EGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE---EEECTTSCCEEE--EEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceEEEE--EEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHH
Confidence 4579999999999999999999987653 222222222222 222222346899999999987764 23455
Q ss_pred h--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 L--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+ ..+|++++|+|+++. +....++.++.. .+.|+++|+||+|+..........+.+.+
T Consensus 79 ~~~~~~d~ii~V~D~t~~----~~~~~~~~~l~~------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~----------- 137 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNP----EQSLYLLLEILE------MEKKVILAMTAIDEAKKTGMKIDRYELQK----------- 137 (258)
T ss_dssp HHHSCCSEEEEEEETTSC----HHHHHHHHHHHT------TTCCEEEEEECHHHHHHTTCCBCHHHHHH-----------
T ss_pred HhhcCCCEEEEEeCCCch----hhHHHHHHHHHh------cCCCEEEEEECcCCCCccchHHHHHHHHH-----------
Confidence 5 589999999999885 233345555544 57999999999998543211100111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 138 ------------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 138 ------------------------HLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ------------------------HHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------------HcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 123579999999999 999999998754
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=3.9e-23 Score=171.67 Aligned_cols=151 Identities=25% Similarity=0.262 Sum_probs=102.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCch------hhHHhhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLR------PKLDEFL 137 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~~~~~ 137 (267)
.++|+++|++|||||||+|+|++..... ...++.+.... ...+.. ...+.+|||||+.++. .....++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v---~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV---GNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC---CSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc---cCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 4689999999999999999999875322 12222122111 122233 5689999999998875 3456666
Q ss_pred c--cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 P--QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~--~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
. .+|++++|+|+++. +....|..++.. .+.|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~d~vi~V~D~t~~----e~~~~~~~~l~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------------ 134 (272)
T 3b1v_A 77 LSQRADSILNVVDATNL----ERNLYLTTQLIE------TGIPVTIALNMIDVLDGQGKKINVDKLSY------------ 134 (272)
T ss_dssp HTTCCSEEEEEEEGGGH----HHHHHHHHHHHH------TCSCEEEEEECHHHHHHTTCCCCHHHHHH------------
T ss_pred hcCCCCEEEEEecCCch----HhHHHHHHHHHh------cCCCEEEEEEChhhCCcCCcHHHHHHHHH------------
Confidence 5 59999999999873 334455555544 57899999999998532211100111111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 135 -----------------------~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 135 -----------------------HLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -----------------------HHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -----------------------HcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 113468999999999 999999998865
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=2.7e-23 Score=173.20 Aligned_cols=154 Identities=24% Similarity=0.224 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh----------h
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP----------K 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----------~ 132 (267)
+.++|+++|.+|+|||||+|+|++..+ .+...++++...........+ ..+.+|||||+.++.. .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~---~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i 76 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ---RVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQI 76 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE---EEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHH
Confidence 457999999999999999999999764 333333333333333333333 5789999999987662 1
Q ss_pred HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 133 LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 133 ~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
...++ +.+|++++|+|+++. +....+...+.. .++|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~----~~~~~~~~~l~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------- 139 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNL----ERNLYLTLQLLE------LGIPCIVALNMLDIAEKQNIRIEIDALSA------- 139 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGH----HHHHHHHHHHHH------HTCCEEEEEECHHHHHHTTEEECHHHHHH-------
T ss_pred HHHHHhhcCCCEEEEEecCCCh----HHHHHHHHHHHh------cCCCEEEEEECccchhhhhHHHHHHHHHH-------
Confidence 23333 789999999999873 333344444433 47899999999998543221111111111
Q ss_pred hhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 211 SRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
..+++++++||++|+ +++|+++|.+.++
T Consensus 140 ----------------------------~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 140 ----------------------------RLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ----------------------------HHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred ----------------------------hcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 123479999999999 9999999988754
No 123
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=173.36 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCC---------CCCHHHHHHHHHcC---CcccceeeeeccccceeEeeccc--------------CCCcc
Q 024474 62 KKSTTIVLAGLS---------GSGKTVLFYQLRDG---STHQGTVTSMEPNEDTFVLHSES--------------TKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~---------~~GKSsLl~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 115 (267)
...+||+++|.+ |||||||+++|+++ .+.....++.. +.++...... +++..
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS--TSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC--HHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc--ccccceeEeecccccccccccccccCCcE
Confidence 456899999999 99999999999984 33222222210 1111111111 34566
Q ss_pred ccEEEEe-----------------------CCCCCCchhhHHhhhc---------------------cCCEEEEEEeCCC
Q 024474 116 KPVHLVD-----------------------VPGHSRLRPKLDEFLP---------------------QAAGIVFVVDALE 151 (267)
Q Consensus 116 ~~~~l~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 151 (267)
+.+++|| ++|++++...+..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 5555555555556665 7999999999988
Q ss_pred C-CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCC
Q 024474 152 F-LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPG 230 (267)
Q Consensus 152 ~-~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (267)
. ..+++.+..|+..+..... ..++|+++|+||+|+...... +...+...
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~--~~~~piilV~NK~Dl~~~~~v----~~~~~~~~------------------------ 224 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLA--KTKKPIVVVLTKCDEGVERYI----RDAHTFAL------------------------ 224 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHH--HTTCCEEEEEECGGGBCHHHH----HHHHHHHH------------------------
T ss_pred CchhhHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccccccHHH----HHHHHHHH------------------------
Confidence 4 1478888888888765311 257899999999999643211 11111000
Q ss_pred CCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 231 QAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 231 ~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++.++++||++|+ +++++++|.+.+
T Consensus 225 -------~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 225 -------SKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp -------TSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------hcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 0124578999999999 999999998765
No 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.88 E-value=2.6e-22 Score=159.37 Aligned_cols=159 Identities=20% Similarity=0.296 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++|+++|++|||||||+++|.+..+.....++. +.++......+++..+.+.+|||||++.++..+..+++.++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~---~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC---SCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 4699999999999999999999987543222221 2223333344466667899999999998888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+++. .++.....|+..+.... ..+.|+++|+||+|+..... ..+... ...
T Consensus 82 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~----l~~--------------- 138 (199)
T 2f9l_A 82 LLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARA----FAE--------------- 138 (199)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGGGCCSCHHHHHH----HHH---------------
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCeEEEEEECcccccccCcCHHHHHH----HHH---------------
Confidence 999999886 45666667776654431 25789999999999975432 222111 111
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++|. +++++++|.+.+
T Consensus 139 -----------------~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 139 -----------------KNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 123568999999999 999999998754
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-22 Score=159.21 Aligned_cols=139 Identities=35% Similarity=0.539 Sum_probs=104.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhcc--
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQ-- 139 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-- 139 (267)
.+.++|+++|++|||||||+++|.+..+.. ...+..++... +.....+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-ccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999987533 22222222110 1134689999999999988888877766
Q ss_pred --CCEEEEEEeCC-CCCCchHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHh
Q 024474 140 --AAGIVFVVDAL-EFLPNCSAASEYLYDILTNSTV-VKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRA 210 (267)
Q Consensus 140 --~d~ii~v~d~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 210 (267)
+|++|+|+|++ +. .++.....|+..++..... ...+.|+++|+||+|+.......++.+.+.+.+..++.
T Consensus 117 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l~~ 190 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 190 (193)
T ss_dssp GGEEEEEEEEETTCCH-HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCCc-hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 89999999998 54 5778888888887754211 12579999999999999988999999999988887754
No 126
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=3.1e-22 Score=175.59 Aligned_cols=172 Identities=20% Similarity=0.178 Sum_probs=113.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc--ee-eeeccc-----cceeEee----cccC---CCccccEEEEeCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG--TV-TSMEPN-----EDTFVLH----SEST---KGKIKPVHLVDVPG 125 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~-~~~~~~-----~~~~~~~----~~~~---~~~~~~~~l~DtpG 125 (267)
..+.++|+++|++|+|||||+|+|++...... .. .+.... ...+... .... ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45678999999999999999999998543211 00 000000 0000000 0000 11225799999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
+++|......++..+|++|+|+|++++ .+.....+++..+... ...|+++|+||+|+.......+..+.+.+.+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~-~~~~qt~~~~~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEP-FPQPQTREHFVALGII-----GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 3456666666544332 3358999999999975432222222222211
Q ss_pred HHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 206 DKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
... ...+++++++||++|+ +++|+++|.+.+++
T Consensus 159 ~~~-----------------------------~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 159 KGT-----------------------------WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTS-----------------------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred Hhh-----------------------------CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 100 0224579999999999 99999999987653
No 127
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.87 E-value=7.5e-22 Score=155.76 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=115.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEE
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGI 143 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~i 143 (267)
.++++++|++|||||||++++.+..+.....++. +.++......+++..+.+.+|||+|+.++...+..+++.++++
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~---~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC---SEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---ceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 4799999999999999999999987643332222 2233333344466667788999999999888888899999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 144 VFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 144 i~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|.++. .+++.+..|+..+.... ..+.|+++|+||+|+..... ....... ..
T Consensus 106 i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~--------------- 162 (191)
T 1oix_A 106 LLVYDIAKH-LTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AE--------------- 162 (191)
T ss_dssp EEEEETTCH-HHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HH---------------
T ss_pred EEEEECcCH-HHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccccccCHHHHHHH----HH---------------
Confidence 999999885 45666666776654421 25789999999999975332 2211111 11
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++.++++||++++ +++++++|.+.+
T Consensus 163 -----------------~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 -----------------KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp -----------------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 123578899999999 999999998764
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.1e-21 Score=167.68 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh---------h
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP---------K 132 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---------~ 132 (267)
...++++++|++|+|||||+|+|++... .......++......... .....+.+|||||+.+... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~---~~~~~~~~t~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP---EIASYPFTTRGINVGQFE--DGYFRYQIIDTPGLLDRPISERNEIEKQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC---EEECCTTCSSCEEEEEEE--ETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCeeeceeEEEEE--ecCceEEEEeCCCccccchhhhhHHHHHH
Confidence 4678999999999999999999998763 222222222222222211 1235799999999865321 1
Q ss_pred HHhhhccCCEEEEEEeCCCCCC-chHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLP-NCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRAS 211 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 211 (267)
...+...+|++++|+|+++... ++.....|+..+.... .+.|+++|+||+|+......++ ..+.+.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~~~~~~~----~~~~~~----- 306 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVADEENIKR----LEKFVK----- 306 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCCHHHHHH----HHHHHH-----
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCChHHHHH----HHHHHH-----
Confidence 2234456999999999887521 5677778887776532 3789999999999975422211 111111
Q ss_pred hhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 212 RSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+.+++++||++|+ +++|+++|.+.+
T Consensus 307 ---------------------------~~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 ---------------------------EKGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ---------------------------HTTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---------------------------hcCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 112358999999999 999999998765
No 129
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.87 E-value=2.7e-22 Score=157.49 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=95.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC-----------CCCchhhH
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG-----------HSRLRPKL 133 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG-----------~~~~~~~~ 133 (267)
++|+++|++|+|||||+++|++..+.....++. +... ...... .+.+||||| ++.+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 72 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV---TRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEI 72 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC---TTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc---ccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHH
Confidence 589999999999999999999987643332211 1111 111111 689999999 44555566
Q ss_pred Hhhhcc-CCEEEEEEeCCCCCCchHHH-HHHHHH--------HHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 134 DEFLPQ-AAGIVFVVDALEFLPNCSAA-SEYLYD--------ILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 134 ~~~~~~-~d~ii~v~d~~~~~~~~~~~-~~~l~~--------~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
..+++. ++++++|+++.+. .++... ..|... +.... ...+.|+++|+||+|+.... .+ ..++
T Consensus 73 ~~~~~~~~~~~~~v~~v~d~-~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~--~~---~~~~ 144 (190)
T 2cxx_A 73 VHFIEDNAKNIDVAVLVVDG-KAAPEIIKRWEKRGEIPIDVEFYQFL--RELDIPTIVAVNKLDKIKNV--QE---VINF 144 (190)
T ss_dssp HHHHHHHGGGCCEEEEEEET-THHHHHHHHHHHTTCCCHHHHHHHHH--HHTTCCEEEEEECGGGCSCH--HH---HHHH
T ss_pred HHHHHhhhccCCEEEEEEcc-hhhhhHHHhhhccCccHHHHHHHHHH--HhcCCceEEEeehHhccCcH--HH---HHHH
Confidence 667665 5544444444443 334444 333321 11110 12578999999999997654 11 1222
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+.. .+. .....++++||++|+ +++++++|.+.+
T Consensus 145 ~~~~~~~-----------------------~~~--~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 145 LAEKFEV-----------------------PLS--EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHTC-----------------------CGG--GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhhh-----------------------hhh--ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 2222110 000 113468999999999 999999998764
No 130
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=1.3e-21 Score=177.52 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=104.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEee---cccC--CCccccEEEEeCCCCCCchhhHHh
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLH---SEST--KGKIKPVHLVDVPGHSRLRPKLDE 135 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~DtpG~~~~~~~~~~ 135 (267)
....+||+++|.+|||||||+|+|++..+.....++......+.... ...+ ++..+.+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 35668999999999999999999999876443333332211111000 1122 334578999999999999999999
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+........ +.+++...
T Consensus 118 ~l~~~d~ii~V~D~s~~----~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~--~~~~~~~~--------- 178 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD----SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQ--KKINERFP--------- 178 (535)
T ss_dssp HHHSSEEEEEEECGGGG----GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCH--HHHHHHCG---------
T ss_pred HccCCcEEEEEEeCCCc----hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCH--HHHHHHHH---------
Confidence 99999999999999864 44566666665532 4689999999999976543211 11111000
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++|+++|.+.+
T Consensus 179 -----------------------~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 -----------------------AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp -----------------------GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred -----------------------hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 112368999999999 999999998765
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=3.4e-22 Score=166.31 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh------hHHhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP------KLDEF 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~------~~~~~ 136 (267)
+.++|+++|++|||||||+|+|++..+ .....+..+...........+ ..+.+|||||+.++.. ....+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~---~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 76 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ---HVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNF 76 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE---EEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHh
Confidence 356999999999999999999998764 222232223333322222233 4699999999988766 45566
Q ss_pred h--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 137 L--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 137 ~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
+ ..+|++++|+|+++. .....++.++... ...|+++|+||+|+..........+.+.+
T Consensus 77 ~~~~~~d~vi~v~D~~~~----~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~----------- 136 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL----MRNLFLTLELFEM-----EVKNIILVLNKFDLLKKKGAKIDIKKMRK----------- 136 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH----HHHHHHHHHHHHT-----TCCSEEEEEECHHHHHHHTCCCCHHHHHH-----------
T ss_pred hhccCCcEEEEEecCCcc----hhhHHHHHHHHhc-----CCCCEEEEEEChhcCcccccHHHHHHHHH-----------
Confidence 6 689999999999874 3444455555542 23899999999997532111000111111
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+++++++||++|+ +++++++|.+.+
T Consensus 137 ------------------------~lg~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 137 ------------------------ELGVPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ------------------------HHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ------------------------HcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 123468999999999 999999998753
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=9.1e-22 Score=174.27 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----------Cchhh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----------RLRPK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----------~~~~~ 132 (267)
..++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+++|||||+. .|...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~--~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE--EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce--eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHH
Confidence 4579999999999999999999987642 122233333332222222233 469999999983 33333
Q ss_pred HH-hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCH--HHHHHHHHHHHHHHH
Q 024474 133 LD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTK--EFIRKQMEKEIDKLR 209 (267)
Q Consensus 133 ~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~l~~~~~~~~ 209 (267)
.. .+++.+|++++|+|++++ .+.+.. .|+..+.. .++|+++|+||+|+...... ++..+.+.+.+..
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~-~s~~~~-~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~-- 319 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEG-IIEQDK-RIAGYAHE------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF-- 319 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTC-CCHHHH-HHHHHHHH------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHhCCEEEEEEcCCcC-CcHHHH-HHHHHHHH------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc--
Confidence 22 478899999999999986 444443 45554443 67899999999999865432 2233322221110
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
....+++++||++|+ ++++++++.+.
T Consensus 320 -----------------------------~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 320 -----------------------------LDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp -----------------------------GTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred -----------------------------CCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 123478999999999 99998887754
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=1.2e-20 Score=166.98 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccce--------------------eee----eccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGT--------------------VTS----MEPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~ 115 (267)
....+|+++|++|+|||||+++|+... +.... ... ....+.+.......+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456799999999999999999996532 10000 000 0001122222222223334
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--ch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--NC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.+|||||+++|......+++.+|++|+|+|++++.. .+ ....+.+..+.. .++| +++|+||+|+.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~------~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT------AGVKHLIVLINKMDDP 168 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH------cCCCeEEEEeecCCCc
Confidence 689999999999999999999999999999999988521 11 123333333222 4566 99999999996
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
.....+...+.+.+.+..+-.... +.. ..++.++++||++|+ ++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g---------------------~~~-~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVG---------------------FNP-KKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhc---------------------ccc-cCCeeEEEeeccCCcccccc
Confidence 543222222333333322210000 000 125689999999999 8873
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=1.6e-21 Score=173.69 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC----------CCCchh
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG----------HSRLRP 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG----------~~~~~~ 131 (267)
...++|+++|.+|+|||||+|+|++.... .+....+++.+........++ ..+++||||| ++.+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERV--IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE--EECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcc--ccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHH
Confidence 35689999999999999999999976421 222222222222111222233 4799999999 455555
Q ss_pred hHH-hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024474 132 KLD-EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 208 (267)
Q Consensus 132 ~~~-~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~ 208 (267)
... .+++.+|++|+|+|++++ +.....++...+.. .++|+++|+||+|+..... .++..+.+++.+..
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~---~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~- 339 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEG---IIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF- 339 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC---CCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG-
T ss_pred HHHHHHHhhCCEEEEEEeCCCC---cCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc-
Confidence 444 478899999999999885 23333333333332 6789999999999986543 23333333321110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
....+++++||++|+ +++++++|.+.+
T Consensus 340 ------------------------------~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 340 ------------------------------LDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ------------------------------GTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ------------------------------CCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 123579999999999 999999987653
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.9e-21 Score=172.40 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=95.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC---------chhhHHh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR---------LRPKLDE 135 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~---------~~~~~~~ 135 (267)
++|+++|.||||||||+|+|++.... .+...++.+.+.......+++ ..+++|||||+.. ++.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~--~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--eecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHH
Confidence 58999999999999999999987631 122233333333333333334 4689999999875 2345667
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
+++.+|++++|+|++++. .....++.++++. .++|+++|+||+|+... ..... ...+
T Consensus 78 ~~~~ad~il~V~D~~~~~---~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-----~~~~~---~~~~------- 134 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGI---TKEDESLADFLRK-----STVDTILVANKAENLRE-----FEREV---KPEL------- 134 (439)
T ss_dssp HHTTCSEEEEEEETTTCC---CHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-----HHHHT---HHHH-------
T ss_pred HHHhCCEEEEEEECCCCC---CHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-----cHHHH---HHHH-------
Confidence 899999999999998752 2233344444432 46899999999997421 00000 0111
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+. ...++++||++|. +++|+++|.+.+
T Consensus 135 --------------------~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 135 --------------------YSLG-FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp --------------------GGGS-SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------HhcC-CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 0001 1146899999999 999999998765
No 136
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=8.7e-21 Score=172.69 Aligned_cols=164 Identities=19% Similarity=0.262 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cccc----ee-eeecc---cccee-----EeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQG----TV-TSMEP---NEDTF-----VLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~----~~-~~~~~---~~~~~-----~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|++|+|||||+++|+... +... .. .+... .+.+. .......++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45699999999999999999997621 1110 00 00000 01111 11111114455789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+..+++.+|++|+|+|++++ ...+....|.. ... .++|+++|+||+|+.... .++..+.+.+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~g-v~~qt~~~~~~-~~~------~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg- 152 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQG-VEAQTLANCYT-AME------MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG- 152 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTC-CCTHHHHHHHH-HHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHH-HHH------CCCCEEEeeeccCccccc-HHHHHHHHHHHhC-
Confidence 9999999999999999999999986 34444444433 222 578999999999998654 3333333322110
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
.....++++||++|. +++|+++|.+++++
T Consensus 153 -------------------------------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 -------------------------------IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -------------------------------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -------------------------------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 001137899999999 99999999998764
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2.8e-21 Score=171.10 Aligned_cols=152 Identities=21% Similarity=0.276 Sum_probs=96.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC--------CchhhHHhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS--------RLRPKLDEF 136 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~--------~~~~~~~~~ 136 (267)
++|+++|.+|||||||+|+|++..+. .+....+.+.+........ .+..+.+|||||+. .+...+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~--~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEW--LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTT--CSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEE--CCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 68999999999999999999987542 2222333333333333333 33689999999986 455667788
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
++.+|++|+|+|++++ ......++.+.++. .++|+++|+||+|+.....
T Consensus 80 ~~~ad~il~vvD~~~~---~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~~----------------------- 128 (436)
T 2hjg_A 80 MDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRA----------------------- 128 (436)
T ss_dssp HHHCSEEEEEEETTTC---SCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------------------------
T ss_pred HHhCCEEEEEEeCCCC---CCHHHHHHHHHHHH-----cCCCEEEEEECccCccchh-----------------------
Confidence 9999999999999886 22334556666653 6789999999999863210
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.. .+ +..+. -..++++||++|+ +++|+++|.+.++
T Consensus 129 --~~----------~~--~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 --NI----------YD--FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp --CC----------CS--SGGGS-SCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred --hH----------HH--HHHcC-CCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 00 00 11111 1157899999999 9999999988764
No 138
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=5.7e-21 Score=159.18 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee----eeccc-cceeEeecccCCCccccEEEEeCCCCCC-------c
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPN-EDTFVLHSESTKGKIKPVHLVDVPGHSR-------L 129 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~l~DtpG~~~-------~ 129 (267)
...++|+++|.+|+|||||+|+|++........+ ...++ +.+........++..+.+++|||||+.+ +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3467999999999999999999887654221110 00111 1122222223345456899999999843 2
Q ss_pred hhhH-------Hhhhcc-------------CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 130 RPKL-------DEFLPQ-------------AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 130 ~~~~-------~~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.... ..|+.. +|+++++++.+.. .+......+...+. .++|+++|+||+|+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~--~~~~~d~~~l~~l~------~~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH--GLKPLDIEFMKRLH------EKVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS--SCCHHHHHHHHHHT------TTSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC--CCCHHHHHHHHHHh------ccCCEEEEEeccCCC
Confidence 3333 444443 7899999987763 23334344444443 378999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.........+.+.+.+. ..++.++++||++|+ ++++.++|.+.++
T Consensus 158 ~~~e~~~~~~~i~~~l~--------------------------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQ--------------------------------EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCC-----------CHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHH--------------------------------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 54333333333333322 223457888999999 9999999988764
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=1.2e-20 Score=171.43 Aligned_cols=164 Identities=18% Similarity=0.295 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccccc-----eeeeecc---ccce-----eEeecccCCCccccEEEEeCCCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-----TVTSMEP---NEDT-----FVLHSESTKGKIKPVHLVDVPGHS 127 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~-----~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~l~DtpG~~ 127 (267)
+.++|+++|++|+|||||+++|+.. .+... ...+... .+.+ ........++..+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4569999999999999999999752 11110 0000000 0001 111111114455789999999999
Q ss_pred CchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 128 RLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
+|...+.++++.+|++|+|+|++++ .+.+....|.. ... .+.|+++|+||+|+.... .+...+.+.+.+
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~g-v~~qt~~~~~~-a~~------~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-- 153 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQG-IEAQTVANFWK-AVE------QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-- 153 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTB-CCHHHHHHHHH-HHH------TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS--
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCC-ccHHHHHHHHH-HHH------CCCCEEEEEeccCccccC-HHHHHHHHHHhh--
Confidence 9999999999999999999999986 34444444433 222 678999999999997654 333322222210
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcCC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVKP 267 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~p 267 (267)
. .....++++||++|. +++|+++|.+++++
T Consensus 154 ------g------------------------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 154 ------G------------------------LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ------C------------------------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ------C------------------------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 0 001137999999999 99999999998864
No 140
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=9e-21 Score=172.73 Aligned_cols=186 Identities=16% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeeccc-------------CCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSES-------------TKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|++..+.......+..+.+........ .+.....+++|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999987644221111111111111111100 001112599999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--------------H
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--------------K 194 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--------------~ 194 (267)
|..++.++++.+|++|+|+|++++. .......+..+.. .++|+++|+||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv--~~qT~e~l~~l~~------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCc--cHhHHHHHHHHHH------cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9999889999999999999999851 1222222332222 6789999999999975321 1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 195 EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+.+.+.+.+..+...... .....+... ........++++++||++|+ +++|++||...+
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e---~gl~~e~~~-------~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHE---EGFESERFD-------RVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTCEEEEGG-------GCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCcchHHHH-------HHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 33334443333332221111 000000000 01112456789999999999 999999998754
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=8e-21 Score=166.85 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=100.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceee--eeccccceeEe---------ecc-cCC--Cc----cccEE
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVT--SMEPNEDTFVL---------HSE-STK--GK----IKPVH 119 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~--~~~~~~~~~~~---------~~~-~~~--~~----~~~~~ 119 (267)
+...++|+++|++++|||||+++|++.... ..... |+......... ... ..+ +. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 456789999999999999999999864321 11111 11100000000 000 001 11 25799
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHH
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 199 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 199 (267)
+|||||+++|.......+..+|++|+|+|++++ .......+.+..+... ...|+++|+||+|+.......+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~l-----~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEP-CPQPQTKEHLMALEIL-----GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC-SSCHHHHHHHHHHHHT-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC-CCCchhHHHHHHHHHc-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999888888888889999999999975 2123333333322221 2358999999999986543222222
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+... ...+++++++||++|+ +++|+++|.+.++
T Consensus 159 ~i~~~l~~~-----------------------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGT-----------------------------IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTS-----------------------------TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhc-----------------------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 232211100 0124579999999999 9999999998765
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=2.3e-22 Score=180.51 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=110.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCE
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAG 142 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ 142 (267)
+.++|+++|++|+|||||+++|.+..+.....+++ +.++........ ....+++|||||+.+|..++..+++.+|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~gi---T~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI---TQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCB---CCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCce---eEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 56799999999999999999999866533222211 122211222221 23479999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccc
Q 024474 143 IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTN 222 (267)
Q Consensus 143 ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 222 (267)
+|+|+|++++ ........+..+.. .++|+++|+||+|+....... ..+.+. ..
T Consensus 79 vILVVDa~dg--~~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~-v~~~l~----~~-------------- 131 (537)
T 3izy_P 79 VILVVAADDG--VMKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEK-VKKELL----AY-------------- 131 (537)
T ss_dssp CEEECBSSSC--CCHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCS-SSSHHH----HT--------------
T ss_pred EEEEEECCCC--ccHHHHHHHHHHHH------cCCcEEEEEecccccccchHH-HHHHHH----hh--------------
Confidence 9999999985 23344444444332 678999999999997543210 001110 00
Q ss_pred cccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 223 DFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.+........++++++||++|+ +++|+++|...+
T Consensus 132 ---------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 132 ---------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ---------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ---------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0001122346789999999999 999999998764
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=1.2e-20 Score=169.90 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc-------------ceeeeec----cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-------------GTVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|++|+|||||+++|+...... ....... ..+.+.......+....+.+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 56799999999999999999996211000 0000000 000111111111222346899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
+.+|......+++.+|++|+|+|++++ ...... ..+..+.. .++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g-~~~~t~-~~~~~~~~------~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKG-VEPRTI-KLMEVCRL------RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC-SCHHHH-HHHHHHHT------TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHH-HHHHHHHH------cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999986 333332 33333322 678999999999996543
No 144
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=5.1e-21 Score=171.06 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC----cccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS----THQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
+.++|+++|++++|||||+++|++.. ............+.+........ ....+++|||||+++|......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHHHHHh
Confidence 45799999999999999999999865 11000000000011111111111 2368999999999999888889999
Q ss_pred cCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccc
Q 024474 139 QAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEA 218 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (267)
.+|++|+|+|++++ ......+.+..+.. .++|+++|+||+|+.+....+...+.+.+.+... .
T Consensus 96 ~aD~~ilVvda~~g--~~~qt~e~l~~~~~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~----~----- 158 (482)
T 1wb1_A 96 IIDLALIVVDAKEG--PKTQTGEHMLILDH------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST----H----- 158 (482)
T ss_dssp SCCEEEEEEETTTC--SCHHHHHHHHHHHH------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS----S-----
T ss_pred hCCEEEEEEecCCC--ccHHHHHHHHHHHH------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh----c-----
Confidence 99999999999885 12333333332222 5688899999999975322233333333322210 0
Q ss_pred cccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 219 DVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
. ..+++++++||++|+ +++|+++|.+.+
T Consensus 159 ------------------~-~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 159 ------------------N-LKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp ------------------S-GGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------------c-cccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 0 114579999999999 999999998864
No 145
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=2.1e-21 Score=170.17 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~ 134 (267)
...++|+++|++|+|||||+|+|++..+.. .....+++...........+. ..+++|||||+.++... ..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~--~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI--VSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 456799999999999999999999876421 111222222222222222222 27999999999877544 45
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.+++.+|++|+|+|+.. ......|+..+.. .+.|+++|+||+|+......+. . ..
T Consensus 109 ~~l~~aD~vllVvD~~~----~~~~~~~l~~l~~------~~~piIvV~NK~Dl~~~~~~~~-~-------~~------- 163 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAP----TPYEDDVVNLFKE------MEIPFVVVVNKIDVLGEKAEEL-K-------GL------- 163 (423)
T ss_dssp HHHTSCSEEEEECSSSC----CHHHHHHHHHHHH------TTCCEEEECCCCTTTTCCCTHH-H-------HH-------
T ss_pred HHHhcCCEEEEEEeCCC----hHHHHHHHHHHHh------cCCCEEEEEeCcCCCCccHHHH-H-------HH-------
Confidence 68899999999999932 2344555555544 5789999999999987655411 1 10
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+ ..++.++++||++|+ +++++++|.+.++
T Consensus 164 --------------------l~~-~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 164 --------------------YES-RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp --------------------SSC-CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred --------------------HHH-HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 000 123478999999999 9999999998873
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=7.6e-21 Score=167.14 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=105.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cceee--eeccccceeEee---------ccc-CC--Cc----cccEE
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTVT--SMEPNEDTFVLH---------SES-TK--GK----IKPVH 119 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~~--~~~~~~~~~~~~---------~~~-~~--~~----~~~~~ 119 (267)
+...++|+++|++++|||||+++|++.... ..... |+.......... ... .. +. ...++
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 355679999999999999999999854321 11111 110000000000 000 01 11 25799
Q ss_pred EEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHH
Q 024474 120 LVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRK 199 (267)
Q Consensus 120 l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 199 (267)
+|||||+.+|.......+..+|++|+|+|++++ .......+.+..+... ...|+++|+||+|+.......+..+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~-----~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQII-----GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHH-----TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHc-----CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999888888888899999999999975 1123333333322211 2357999999999975432112222
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+.+.+.. ....+++++++||++|+ +++|+++|.+.++
T Consensus 161 ~i~~~l~~-----------------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEG-----------------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTT-----------------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHh-----------------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211110 00224579999999999 9999999998765
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.83 E-value=9e-21 Score=156.73 Aligned_cols=167 Identities=11% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccc--cceeEeecccCCCccccEEEEeCCCCCCchh--------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPN--EDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------- 131 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------- 131 (267)
.+.++|+++|++|+|||||+|+|++..... ....++ +..........+ +..+.+|||||+.++..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~---~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFE---SKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSC---CCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHH
Confidence 456899999999999999999999876311 111121 122221122222 35799999999876532
Q ss_pred ---hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe-cCCCCCCCCHHH-HH----HHHH
Q 024474 132 ---KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN-KTDKVTAHTKEF-IR----KQME 202 (267)
Q Consensus 132 ---~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n-K~Dl~~~~~~~~-~~----~~l~ 202 (267)
....+++.+|++|+|+|+++..........++.+.... ....|+++|+| |+|+... .... +. +.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~----~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE----DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG----GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc----hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 22336789999999999986422223344555554431 12456777776 9999743 2222 11 1122
Q ss_pred HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 203 KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+.+..+ .. .......+++||++|. +++++++|.+.+
T Consensus 170 ~~~~~~----~~-----------------------~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 170 KLVAAC----GG-----------------------RICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHHT----TT-----------------------CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----CC-----------------------eEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 122211 00 0000111788999999 999999998765
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=2.6e-20 Score=157.13 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=101.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeecc-ccceeEeecccCCCccccEEEEeCCCCC-Cch--------hh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEP-NEDTFVLHSESTKGKIKPVHLVDVPGHS-RLR--------PK 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~DtpG~~-~~~--------~~ 132 (267)
+..+|+++|++|+|||||+|+|++..+. ..+..+ ++....... +......+.+|||||+. ... ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~---i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS---ITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE---ECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHH
Confidence 3458999999999999999999997642 111112 121111111 12233689999999987 322 22
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
...+++.+|++++|+|+++. .....++.+.+.. .+.|+++|+||+|+... .....+ .+..+...
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~~----~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~--~~~~~~----~l~~l~~~- 145 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTRW----TPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE--KADLLP----HLQFLASQ- 145 (301)
T ss_dssp TTSCCCCEEEEEEEEETTCC----CHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC--HHHHHH----HHHHHHTT-
T ss_pred HHHHHhcCCEEEEEEeCCCC----CHHHHHHHHHHHh-----cCCCEEEEEECcccCcc--HHHHHH----HHHHHHHh-
Confidence 34567889999999999762 2333455555542 57899999999998752 222222 22222100
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+...++++||++|+ +++|+++|.+.++
T Consensus 146 --------------------------~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 146 --------------------------MNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp --------------------------SCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred --------------------------cCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 111258999999999 9999999998764
No 149
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=8.3e-21 Score=166.63 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=108.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccceeee-e---ccccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG--------STHQGTVTS-M---EPNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
....++|+++|++|+|||||+++|++. .+....... . ...+.+.......+......+.+|||||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456789999999999999999999873 110000000 0 0001111111112233346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEID 206 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~ 206 (267)
|......+++.+|++|+|+|++++ ......+++..+.. .++| +++|+||+|+..... .+.+.+.+.+.+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g--~~~qt~~~l~~~~~------~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADG--PMPQTREHILLARQ------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTC--CCHHHHHHHHHHHH------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCC--CcHHHHHHHHHHHH------cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 998899999999999999999886 23445555544433 5678 899999999974211 1222223333222
Q ss_pred HHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-------------------chhHHHHHHhhcC
Q 024474 207 KLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-------------------ISQVEQFIREQVK 266 (267)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-------------------i~~l~~~l~~~~~ 266 (267)
.+. +. ..+++++++||++|+ +++|+++|.++++
T Consensus 160 ~~~-------------------------~~--~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 160 QYE-------------------------FP--GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HTT-------------------------SC--TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred Hhc-------------------------cc--ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 210 00 123578999999985 6788889888775
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=2.7e-20 Score=166.77 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=100.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--cccceee------------------------eeccccceeEeecccCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS--THQGTVT------------------------SMEPNEDTFVLHSESTKGK 114 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 114 (267)
....++|+++|.+|+|||||+++|++.. +...... .....+.+.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4567899999999999999999997641 1100000 0000011111111112334
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCC--c--hHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLP--N--CSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~--~--~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.+.||||||+++|......+++.+|++|+|+|++++.. . ......+...+.... ...|+++|+||+|+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CCCcEEEEEECcCccc
Confidence 4689999999999999999999999999999999988511 0 112222232333221 2346999999999976
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chh
Q 024474 191 AH--TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQ 256 (267)
Q Consensus 191 ~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~ 256 (267)
.. ..+++.+.+...+..+. + ...++.|+++||++|+ +++
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g-------------------------~--~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIG-------------------------F--FEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-------------------------C--CGGGEEEEECCSSSCTTSSS
T ss_pred chHHHHHHHHHHHHHHHHHcC-------------------------C--CcccceEEEEeeecCCCccc
Confidence 32 12333333333333221 0 0235689999999999 774
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=2.5e-20 Score=152.90 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC--------CchhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS--------RLRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~--------~~~~~~ 133 (267)
.+.++|+++|.+|+|||||+|+|++............ ++..........+ +..+.+|||||+. ++....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~-~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATS-VTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC----------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCC-ccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 4678999999999999999999998775322211111 1111111222222 3579999999973 333333
Q ss_pred Hhhh----ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 134 DEFL----PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 134 ~~~~----~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..++ +.+|++|+|+|++...........++.+..... ..+.|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~---~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGED---VLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGG---GGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChh---hhccEEEEEEchHhcCCC
Confidence 3444 899999999999864222333445555544321 136899999999999754
No 152
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=1.3e-20 Score=167.85 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAA 141 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d 141 (267)
++.++|+++|++++|||||+++|.+..+.......+...... ..+...+..+++|||||+.+|..++..++..+|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~-----~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD 76 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA-----YHVETENGMITFLDTPGHAAFTSMRARGAQATD 76 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSC-----CCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEE-----EEEEECCEEEEEEECCCcHHHHHHHHHHHhhCC
Confidence 467899999999999999999998765432222111111111 112222357899999999999999888999999
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccc
Q 024474 142 GIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVT 221 (267)
Q Consensus 142 ~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 221 (267)
++|+|+|++++. .....+.+..... .+.|+++++||+|+...... ...
T Consensus 77 ~aILVVda~~g~--~~qT~e~l~~~~~------~~vPiIVviNKiDl~~~~~~------------------------~v~ 124 (501)
T 1zo1_I 77 IVVLVVAADDGV--MPQTIEAIQHAKA------AQVPVVVAVNKIDKPEADPD------------------------RVK 124 (501)
T ss_dssp SEEEEEETTTBS--CTTTHHHHHHHHH------TTCCEEEEEECSSSSTTCCC------------------------CTT
T ss_pred EEEEEeecccCc--cHHHHHHHHHHHh------cCceEEEEEEeccccccCHH------------------------HHH
Confidence 999999998741 2222233333222 67899999999999753210 000
Q ss_pred ccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 222 NDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
..+. ...+..+.....++++++||++|+ +++|+++|...
T Consensus 125 ~~l~----~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 125 NELS----QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCC----CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHH----HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0000 000001112345789999999999 99999998753
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=1.8e-20 Score=163.96 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc------e--ee---eeccccceeEeecccCCCccccEEEEeCCCCCCchh
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------T--VT---SMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 131 (267)
+.++|+++|++|+|||||+++|++...... . .. .....+.+.......+......+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 456999999999999999999987411000 0 00 000011112211122233446899999999999988
Q ss_pred hHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHHHH
Q 024474 132 KLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDKLR 209 (267)
Q Consensus 132 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~ 209 (267)
....+++.+|++|+|+|++++ . .....+.+..+.. .++| +++|+||+|+..... .+.+.+.+.+.+..+.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g-~-~~qt~e~l~~~~~------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDG-P-MPQTREHLLLARQ------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTC-S-CHHHHHHHHHHHH------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHhhCCEEEEEEECCCC-C-CHHHHHHHHHHHH------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 888999999999999999986 2 3344444433322 5678 789999999975211 1222223333222210
Q ss_pred hhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-----------chhHHHHHHhhcCC
Q 024474 210 ASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-----------ISQVEQFIREQVKP 267 (267)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-----------i~~l~~~l~~~~~p 267 (267)
+. ...++++++||++|. +++|+++|.+++++
T Consensus 154 -------------------------~~--~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 154 -------------------------YK--GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -------------------------SC--TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -------------------------CC--cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 00 124579999999964 78999999987753
No 154
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.82 E-value=2e-20 Score=159.90 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCC----CchhhHHhh---h
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHS----RLRPKLDEF---L 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~----~~~~~~~~~---~ 137 (267)
.+|+++|.+|||||||+|+|++... .+..+..++.........+++ ...+.+|||||+. .+..+...+ +
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~---~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP---KIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC---EESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC---ccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence 5799999999999999999988653 111121111111111222222 2479999999953 233343444 4
Q ss_pred ccCCEEEEEEeCCCC--CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 138 PQAAGIVFVVDALEF--LPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
..+|++|+|+|+++. ..+++....|+.++..... ...++|+++|+||+|+.... + .+++....+
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~~---e---~~~~l~~~l------- 300 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEAA---E---NLEAFKEKL------- 300 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTHH---H---HHHHHHHHC-------
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCCH---H---HHHHHHHHh-------
Confidence 569999999999872 2567777777777765421 12578999999999996421 1 111111110
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.....++++||++|+ +++|+++|.+.+.
T Consensus 301 -----------------------~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 301 -----------------------TDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp -----------------------CSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -----------------------hcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 111468999999999 9999999988763
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=2.7e-20 Score=161.00 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEE
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVF 145 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~ 145 (267)
+|+++|++|+|||||+++|+.. -.++.. .... +......+++|||||+.+|.......++.+|++|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~-----~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail 89 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDI-----TMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVL 89 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSS-----EEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEe-----eEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEE
Confidence 9999999999999999999821 111211 1111 12233579999999999998888889999999999
Q ss_pred EEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 024474 146 VVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LICCN-KTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTND 223 (267)
Q Consensus 146 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-ivv~n-K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (267)
|+| +.+ ......+++..+.. .+.|. ++|+| |+|+ .....++..+.+++.+...
T Consensus 90 Vvd-~~g--~~~qt~e~~~~~~~------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--------------- 144 (370)
T 2elf_A 90 CIP-PQG--LDAHTGECIIALDL------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--------------- 144 (370)
T ss_dssp EEC-TTC--CCHHHHHHHHHHHH------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---------------
T ss_pred EEc-CCC--CcHHHHHHHHHHHH------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---------------
Confidence 999 654 34455555544433 46777 99999 9999 4321222222222211100
Q ss_pred ccCCCCCCCcccccccceeEEEE--eeecc---Cc-chhHHHHHHhhcC
Q 024474 224 FTLGIPGQAFSFSQCHNKVSVAE--ASGLT---GE-ISQVEQFIREQVK 266 (267)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---g~-i~~l~~~l~~~~~ 266 (267)
-...+++++ +||++ |+ +++|+++|.+.++
T Consensus 145 --------------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 145 --------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp --------------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred --------------CCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 012457999 99999 99 9999999987653
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=3.4e-19 Score=153.69 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=95.2
Q ss_pred CCCE-EEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC---------chhh
Q 024474 63 KSTT-IVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR---------LRPK 132 (267)
Q Consensus 63 ~~~~-i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~---------~~~~ 132 (267)
...+ |+++|++|+|||||+|+|++..+. +.....++.+.......+++ ..+.+|||||+.. ++..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~---~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQK---VDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCcc---ccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH
Confidence 3455 999999999999999999987642 11111112112122222334 4689999999732 2222
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASR 212 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 212 (267)
+ ..+..+|++++|+|++++..........+.+++.... ..+.|+++|+||+|+.... .....+.+......+.
T Consensus 252 l-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--- 324 (364)
T 2qtf_A 252 L-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--- 324 (364)
T ss_dssp H-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC---
T ss_pred H-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc---
Confidence 2 3578899999999998751112222222233333211 1568999999999997543 2221111211111100
Q ss_pred hccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 213 SAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++|+ +++|+++|.+.+
T Consensus 325 --------------------------~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 --------------------------SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --------------------------SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------------------CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 113457999999999 999999998764
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=8.4e-20 Score=161.52 Aligned_cols=168 Identities=21% Similarity=0.255 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccceeee------------------ec------cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGTVTS------------------ME------PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~~~~------------------~~------~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++|+|||||+++|+.. .+....... .+ ..+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45679999999999999999999864 222111000 00 00111111112223445
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH-------HHHHHHHHhcCCCCCCCC-cEEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-------SEYLYDILTNSTVVKKKI-PVLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~-pvivv~nK~D 187 (267)
..+++|||||+.+|......+++.+|++|+|+|++++ +++.. .+.+..... .+. |+++|+||+|
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~~~------~~~~~iivviNK~D 155 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILAKT------MGLDQLIVAVNKMD 155 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHHHH------TTCTTCEEEEECGG
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 6899999999999999999999999999999999984 44432 222221111 343 6899999999
Q ss_pred CCCCCC-H---HHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch-------
Q 024474 188 KVTAHT-K---EFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------- 255 (267)
Q Consensus 188 l~~~~~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~------- 255 (267)
+..... . +.+.+.+.+.+..+. +. ..++.++++||++|+ +.
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------~~--~~~~~~i~iSA~~g~~v~e~~~~~~ 208 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYG-------------------------FN--TNKVRFVPVVAPSGDNITHKSENMK 208 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTT-------------------------CC--CTTCEEEECBTTTTBTTTBCCSSCT
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcC-------------------------CC--cCCceEEEeecccCccccccccccc
Confidence 986421 1 222333333322210 00 124679999999999 75
Q ss_pred -----hHHHHHHhh
Q 024474 256 -----QVEQFIREQ 264 (267)
Q Consensus 256 -----~l~~~l~~~ 264 (267)
.|+++|...
T Consensus 209 ~~~g~~Ll~~l~~~ 222 (435)
T 1jny_A 209 WYNGPTLEEYLDQL 222 (435)
T ss_dssp TCCSCCHHHHHTTC
T ss_pred cccchhHHHHHhcc
Confidence 577777654
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=8.1e-20 Score=161.62 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccee------eeecccc--------------------ceeEeecccCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGTV------TSMEPNE--------------------DTFVLHSESTKG 113 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~~------~~~~~~~--------------------~~~~~~~~~~~~ 113 (267)
.+.++|+++|++|+|||||+++|++... ..... ....+++ .+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4457999999999999999999986431 00000 0000100 000000111122
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCC
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-PVLICCNKTDKVTA 191 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-pvivv~nK~Dl~~~ 191 (267)
....+++|||||+++|......++..+|++|+|+|++++. .....+++..+.. .+. |+++|+||+|+...
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~--~~qt~~~l~~~~~------~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--QTQTRRHSYIASL------LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEEECTTTTTS
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH------cCCCeEEEEEEcCcCCcc
Confidence 3467999999999999988889999999999999999862 3344444443322 334 69999999999753
No 159
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=9.1e-20 Score=161.58 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=97.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh----------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK---------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---------- 132 (267)
..++++++|++|||||||+|+|++.... .+...++++.+.......+++ ..+.+|||||+......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~--~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc--ccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence 3479999999999999999999987531 122222222222222222344 36899999998543221
Q ss_pred --HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC--HHHHHHHHHHHHHHH
Q 024474 133 --LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT--KEFIRKQMEKEIDKL 208 (267)
Q Consensus 133 --~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~l~~~~~~~ 208 (267)
...+++.+|++++|+|++++ .+... .++...+.. .++|+++|+||+|+..... .++..+.+.+.+.
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~-~~~~~--~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 324 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQG-ITRQD--QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY-- 324 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC-CCHHH--HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG--
T ss_pred HHHHHHHhhCCEEEEEEeCCCC-CCHHH--HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc--
Confidence 13467889999999999875 23322 233343332 6789999999999975432 2323222221110
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
. ....+++++||++|. +++|++.+.+.
T Consensus 325 ----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 325 ----------------------------F-IDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp ----------------------------G-GTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----------------------------c-CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 0 123468999999999 99999988764
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=6.6e-20 Score=163.22 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=99.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCC--------CCCchhhH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPG--------HSRLRPKL 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG--------~~~~~~~~ 133 (267)
...++|+++|.+|||||||+|+|++..+. .+....+.+.+.... ........+++||||| +..++...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 34679999999999999999999987542 122222222222222 2233446899999999 44556667
Q ss_pred HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 024474 134 DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 134 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
..+++.+|++|+|+|..++ +.....++.+.++. .++|+++|+||+|+......
T Consensus 97 ~~~~~~ad~il~VvD~~~~---~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~~------------------- 149 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREG---VTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMRAN------------------- 149 (456)
T ss_dssp HHHHHHCSEEEEEEESSSC---SCHHHHHHHHHHTT-----CCSCEEEEEECC---------------------------
T ss_pred HhhHhhCCEEEEEEeCCCC---CChHHHHHHHHHHH-----cCCCEEEEEECccchhhhhh-------------------
Confidence 7889999999999998775 44556667777653 68899999999997532100
Q ss_pred ccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 214 AVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+ +..+. ...++++||++|. +.+|++++.+.+
T Consensus 150 ------~~e------------~~~lg-~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 150 ------IYD------------FYSLG-FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -------CC------------SGGGS-SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred ------HHH------------HHHcC-CCceEEeecccccchHHHHHHHHhhc
Confidence 000 00001 1135789999999 999999998765
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.80 E-value=6.4e-20 Score=163.13 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccce--------------------eeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQGT--------------------VTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~~--------------------~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++|+|||||+++|++. .+.... +... ...+.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 34579999999999999999999864 111100 0000 000111111111123344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH-------HHHHHHHHHHhcCCCCCCCCc-EEEEEecCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS-------AASEYLYDILTNSTVVKKKIP-VLICCNKTD 187 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~p-vivv~nK~D 187 (267)
..+.+|||||+.+|......+++.+|++|+|+|++++ .+. .....+..... .++| +++|+||+|
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g--~~~~sf~~~~qt~~~~~~~~~------~~v~~iivviNK~D 156 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG--EFEAGISKDGQTREHALLAFT------LGVRQLIVAVNKMD 156 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH--HHHHHTCTTSHHHHHHHHHHH------TTCCEEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC--ccccccCcchhHHHHHHHHHH------cCCCeEEEEEEccc
Confidence 6899999999999999999999999999999999874 121 23333332222 4565 999999999
Q ss_pred CCC
Q 024474 188 KVT 190 (267)
Q Consensus 188 l~~ 190 (267)
+..
T Consensus 157 l~~ 159 (458)
T 1f60_A 157 SVK 159 (458)
T ss_dssp GGT
T ss_pred ccc
Confidence 973
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.5e-19 Score=164.13 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=99.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccee---------eeec-----------------cccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTV---------TSME-----------------PNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~ 115 (267)
...++|+++|++|+|||||+++|++....-... .... ..+.+.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 567899999999999999999998753210000 0000 00111111122223344
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCC-CcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKK-IPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~-~pvivv~nK~Dl~ 189 (267)
..++||||||+.+|......+++.+|++|+|+|++++. .. .......+. +... .+ .|+++|+||+|+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~-----lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS-----LGIHNLIIAMNKMDNV 318 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHT-----TTCCEEEEEEECTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHH-----cCCCeEEEEEeccccc
Confidence 68999999999999999999999999999999998630 00 112222222 2221 33 4599999999997
Q ss_pred CCCC--HHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhH
Q 024474 190 TAHT--KEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQV 257 (267)
Q Consensus 190 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l 257 (267)
.... .+++.+.+...+..+.. ...++.++++||++|+ ++++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~---------------------------~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGF---------------------------FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTC---------------------------CGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcc---------------------------cccCccEEeeecccCCCcccc
Confidence 6321 22333333333332210 0235689999999999 7643
No 163
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=147.44 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=74.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC-----------c
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR-----------L 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~-----------~ 129 (267)
....++|+++|++|+|||||+|+|++..+.....+... .+..........++ ..+.+|||||..+ +
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc-eeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 34678999999999999999999999776332222111 11222222222233 5799999999654 2
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKE 195 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~ 195 (267)
......+++++|++|+|+|++...........++...... ....|+++|+||+|+......+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~----~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE----RARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH----HHGGGEEEEEECGGGC------
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh----hccceEEEEEeCCccCCcccHH
Confidence 2333445667899999999986522222233333332221 1345899999999987655443
No 164
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=2.3e-20 Score=170.53 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--ccce--------------------eee-e---ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST--HQGT--------------------VTS-M---EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~--~~~~--------------------~~~-~---~~~~~~~~~~~~~~~~~~ 115 (267)
...++|+++|++|+|||||+++|++... .... ... . ...+.+.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 3456899999999999999999964210 0000 000 0 000112222222223334
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cc---hHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PN---CSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~---~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+.||||||+.+|......+++.+|++|+|+|++++. .. .......+..+.. .++| +|+|+||+|+.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~------lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA------LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH------SSCCCEEEEEECGGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH------cCCCeEEEEEeccccc
Confidence 68999999999999888888899999999999998641 01 1122222222222 4565 99999999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-ch-------------
Q 024474 190 TAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-IS------------- 255 (267)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~------------- 255 (267)
... .+. .+.+.+.+..+.. ... + + ...+++++++||++|+ ++
T Consensus 329 ~~~-~~~-~~~i~~el~~~l~--~~~----------------g--~--~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g 384 (592)
T 3mca_A 329 SWS-EDR-FQEIKNIVSDFLI--KMV----------------G--F--KTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384 (592)
T ss_dssp TTC-HHH-HHHHHHHHHHHHT--TTS----------------C--C--CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCS
T ss_pred ccc-HHH-HHHHHHHHHHHHH--Hhh----------------C--C--CccceEEEEEecccCcccccccccccccccch
Confidence 522 111 1222222222110 000 0 0 0235689999999999 87
Q ss_pred -hHHHHHHhhcCC
Q 024474 256 -QVEQFIREQVKP 267 (267)
Q Consensus 256 -~l~~~l~~~~~p 267 (267)
.|++.|.+.++|
T Consensus 385 ~~Lle~l~~~~pp 397 (592)
T 3mca_A 385 PTLLSALDQLVPP 397 (592)
T ss_dssp CCHHHHHHTSCCC
T ss_pred HHHHHHHHhhccc
Confidence 799999887654
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=4.4e-19 Score=158.13 Aligned_cols=124 Identities=20% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc--------------------eeeee----ccccceeEeecccCCCcc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG--------------------TVTSM----EPNEDTFVLHSESTKGKI 115 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~--------------------~~~~~----~~~~~~~~~~~~~~~~~~ 115 (267)
.+.++|+++|++++|||||+++|+. +.+... ..... ...+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4567999999999999999999974 221100 00000 000111111111122234
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCC--Cch---HHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFL--PNC---SAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~---~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
..+++|||||+.+|......+++.+|++|+|+|++++. .++ ....+.+..... .++| +++|+||+|+.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~------~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART------QGINHLVVVINKMDEP 194 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH------TTCSSEEEEEECTTST
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH------cCCCEEEEEEECccCC
Confidence 68999999999999998889999999999999999851 011 122222222221 5677 99999999996
Q ss_pred CC
Q 024474 190 TA 191 (267)
Q Consensus 190 ~~ 191 (267)
..
T Consensus 195 ~~ 196 (467)
T 1r5b_A 195 SV 196 (467)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 166
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=2.2e-18 Score=160.19 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=49.5
Q ss_pred ccEEEEeCCCCCC---chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 116 KPVHLVDVPGHSR---LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 116 ~~~~l~DtpG~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+.+|||||..+ .......+++.+|++|+|+|++++ .+...... +.+.+. ..+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~-~s~~e~~~-l~~~l~-----~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP-CTLGERRY-LENYIK-----GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST-TCHHHHHH-HHHHTT-----TSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc-cchhHHHH-HHHHHH-----hhCCCEEEEEECcccccc
Confidence 3699999999765 344566789999999999999875 33333332 333332 246789999999998654
No 167
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=1.3e-18 Score=156.90 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--ccc-----------ceeeeec----cccceeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS--THQ-----------GTVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~-----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+++|++|+|||||+++|+... +.. ....... ..+.+.......+....+.+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 56799999999999999999998632 100 0000000 000011111111223447899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+.+|......+++.+|++|+|+|++++ .......+..... ..++|+++|+||+|+.... ..+..+.+++
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g---~~~~t~~~~~~~~-----~~~ipiivviNK~Dl~~~~-~~~~~~~i~~ 160 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKG---VEDRTRKLMEVTR-----LRDTPILTFMNKLDRDIRD-PMELLDEVEN 160 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC---SCHHHHHHHHHHT-----TTTCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCcc---chHHHHHHHHHHH-----HcCCCEEEEEcCcCCcccc-HHHHHHHHHH
Confidence 999999999999999999999999986 2222233333332 2678999999999997654 3333344433
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.78 E-value=2.4e-19 Score=170.72 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=108.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc------e-eee---e-ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQG------T-VTS---M-EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~------~-~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+.++|+++|++++|||||+++|++...... . ... . ...+.+.......++.....+++|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34568999999999999999999986411000 0 000 0 00111111111122344568999999999999
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCCC-HHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKVTAHT-KEFIRKQMEKEIDK 207 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~l~~~~~~ 207 (267)
......+++.+|++|+|+|++++. .....+++..+.. .++| +++|+||+|+..... .+.+.+.+.+.+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv--~~QTrEhL~ll~~------lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP--MPQTREHILLGRQ------VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS--CTTHHHHHHHHHH------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC--cHHHHHHHHHHHH------cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 888889999999999999999852 3334444443332 4677 799999999975211 11222333332222
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccC--------c-chhHHHHHHhhcC
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTG--------E-ISQVEQFIREQVK 266 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~-i~~l~~~l~~~~~ 266 (267)
.. +. ..+++++++||++| + +++|+++|.++++
T Consensus 445 ~G-------------------------~~--~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 445 YD-------------------------FP--GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TT-------------------------SC--TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cc-------------------------cc--ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 10 00 12457999999999 5 8899999998775
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=1.2e-18 Score=146.72 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=98.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeecccc---------------------ceeEe-e-cc-----cC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNE---------------------DTFVL-H-SE-----ST 111 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~---------------------~~~~~-~-~~-----~~ 111 (267)
...++|+++|.+|+|||||+|+|++..+.... ..+..|+. .++.. . .. .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998763111 11111110 00000 0 00 00
Q ss_pred -----------------CCccccEEEEeCCCCCC-------------chhhHHhhhccCCEEE-EEEeCCCCCCchHHHH
Q 024474 112 -----------------KGKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIV-FVVDALEFLPNCSAAS 160 (267)
Q Consensus 112 -----------------~~~~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~ 160 (267)
......+.+|||||+.. +......|++.++.++ +|+|+++. -......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-GGGCHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-hhhhHHH
Confidence 01125899999999742 3455667888888766 79999874 2222222
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccc-c
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC-H 239 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (267)
.++..+ . ..+.|+++|+||+|+...... ..+.++. . +..+ .
T Consensus 183 ~~~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~-------------------~-----------~~~~~~ 224 (299)
T 2aka_B 183 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLEN-------------------K-----------LLPLRR 224 (299)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECGGGSCTTCC--CHHHHTT-------------------C-----------SSCCTT
T ss_pred HHHHHh-C-----CCCCeEEEEEEccccCCCCch--HHHHHhC-------------------C-----------cCcCCC
Confidence 333332 2 257899999999999754331 0011100 0 0000 1
Q ss_pred ceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 240 NKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 240 ~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
+...++++||++|+ +++++++|.+.
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHHH
Confidence 23468899999999 99999998653
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=8e-19 Score=151.46 Aligned_cols=165 Identities=14% Similarity=0.273 Sum_probs=83.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cceeee----eccccceeEeec--ccCCCccccEEEEeCCCC-------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGTVTS----MEPNEDTFVLHS--ESTKGKIKPVHLVDVPGH------- 126 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~l~DtpG~------- 126 (267)
....++|+++|++|+|||||+|+|.+.... ...... ..++ ....... ...++....+++|||||+
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~t-i~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERT-VQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------C-EEEEEEEEC----CEEEEEEEEC-----------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCc-eeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 456689999999999999999998765422 111110 0111 1111111 122344467999999999
Q ss_pred CCchhhHH-------hhhccC-------------CEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 127 SRLRPKLD-------EFLPQA-------------AGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 127 ~~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.+..+.. .|++.+ |+++|+++.+. .++......+...+. .++|+|+|+||+
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--~~l~~~d~~~~~~l~------~~~piIlV~NK~ 184 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--HGLKPLDVAFMKAIH------NKVNIVPVIAKA 184 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--SSCCHHHHHHHHHTC------S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--CCcchhHHHHHHHhc------cCCCEEEEEECC
Confidence 55555554 555443 45777776533 235555433333322 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc----chhHHHHHH
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE----ISQVEQFIR 262 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----i~~l~~~l~ 262 (267)
|+..........+.+.+.+. ..++.++++||++|+ +..+.+.|.
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~--------------------------------~~~i~~~~~Sa~~~~~~e~~~~l~~~i~ 232 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRLLK 232 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--------------------------------CC-CCSCCCC---------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------------------------HCCCCEEeCCCcCCCcchhHHHHHHHHH
Confidence 99754322211112211111 224578899999875 566677776
Q ss_pred hhcC
Q 024474 263 EQVK 266 (267)
Q Consensus 263 ~~~~ 266 (267)
+.++
T Consensus 233 ~~ip 236 (361)
T 2qag_A 233 ASIP 236 (361)
T ss_dssp HTCS
T ss_pred hcCC
Confidence 6654
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=3.2e-18 Score=136.53 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC----------ch
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR----------LR 130 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~----------~~ 130 (267)
..++.+|+++|++|||||||+|+|++..+.....++. +.+........++ .+.+|||||+.. ++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~---G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP---GRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET---TEEEEECCCCC------CCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCC---ccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHH
Confidence 4577899999999999999999999875321111111 1111111111112 588999999853 22
Q ss_pred hhHHhhh---ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 024474 131 PKLDEFL---PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 131 ~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~ 207 (267)
.....++ +.++++++++|++... +.. ...+...+. ..+.|+++|+||+|+............+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~--~~~~~~~~~-----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~- 167 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPL-KDL--DQQMIEWAV-----DSNIAVLVLLTKADKLASGARKAQLNMVREAVL- 167 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCC-CHH--HHHHHHHHH-----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCC-chh--HHHHHHHHH-----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHH-
Confidence 2233444 4689999999998752 222 112222222 157899999999998643211110111111111
Q ss_pred HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 208 LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+....+.++++||++++ +++++++|.+.+
T Consensus 168 -----------------------------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 168 -----------------------------AFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp -----------------------------GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------------hcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 00223568899999999 999999998764
No 172
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=1.1e-17 Score=154.90 Aligned_cols=134 Identities=21% Similarity=0.192 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccee------eeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTV------TSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+..+|+++|++|+|||||+++|++.... .+.+ ....+ .+.++......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 46679999999999999999999843221 0000 00000 01111111111223346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
|......+++.+|++++|+|++++. ......++..+.. .++|+++|+||+|+. ....+..+.+.+.+
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~--~~qt~~~~~~~~~------~~ip~ilv~NKiD~~--~~~~~~~~~l~~~l 153 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGV--QVGTERAWTVAER------LGLPRMVVVTKLDKG--GDYYALLEDLRSTL 153 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH------TTCCEEEEEECGGGC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCcEEEEEcCCccc--chhHHHHHHHHHH------ccCCEEEEecCCchh--hhHHHHHHHHHHHh
Confidence 9999999999999999999988752 2233344444433 578999999999997 44444444454433
No 173
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=2.8e-18 Score=147.13 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=91.5
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+++|||+|++.++..|..|+++++++|||+|+++. .+++.+...|+..+..+.. ..++|+++|+||
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~--~~~~piiLv~NK 269 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW--FTDTSIILFLNK 269 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEEC
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc--ccCCcEEEEEEC
Confidence 46799999999999999999999999999999999983 1568889999999887542 267999999999
Q ss_pred CCCCCC-----------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEee
Q 024474 186 TDKVTA-----------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEAS 248 (267)
Q Consensus 186 ~Dl~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 248 (267)
+|+... ...++..+.+...+..+. ......++.++++|
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~-------------------------~~~~~~~~~~~etS 324 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN-------------------------KRKDTKEIYTHFTC 324 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTC-------------------------SCTTTCCEEEEECC
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhh-------------------------cccCCCceEEEEEE
Confidence 998521 223333333322221110 00003467899999
Q ss_pred eccCc-chhHHHHHHhhc
Q 024474 249 GLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 249 a~~g~-i~~l~~~l~~~~ 265 (267)
|++|+ |+++++|+.+.+
T Consensus 325 A~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 325 ATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHHHHHHH
Confidence 99999 999999987653
No 174
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=2.6e-18 Score=148.08 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeee
Q 024474 21 EEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSM 97 (267)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~ 97 (267)
+..+.+++++++...+..... +...+..+. ....+.++|+++|.+|+|||||+++|...-. ....+...
T Consensus 44 ~~~l~~~i~~~e~~~~~~~~~--~~~~~~~~~------~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 44 RAALPRAITLVESTRPDHREQ--AQQLLLRLL------PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp TTHHHHHHHHHHCCSHHHHHH--HHHHHHHHG------GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhcChhhHHH--HHHHHHHhH------hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 556788888887765543321 222222221 1235677999999999999999999864210 01011111
Q ss_pred ccccce---------------------eEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhhhcc
Q 024474 98 EPNEDT---------------------FVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEFLPQ 139 (267)
Q Consensus 98 ~~~~~~---------------------~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 139 (267)
.+.... +..... .....++.+.||||||... .....+..
T Consensus 116 Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~ 192 (355)
T 3p32_A 116 DPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANM 192 (355)
T ss_dssp C----------------CHHHHTCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTT
T ss_pred CCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHh
Confidence 111100 000000 0011346899999999654 23344588
Q ss_pred CCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcccccc
Q 024474 140 AAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEAD 219 (267)
Q Consensus 140 ~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (267)
+|++++|+|+... +....+... ....|+++|+||+|+..........+.+.+.+..+...
T Consensus 193 aD~vl~V~d~~~~-~~~~~l~~~-----------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-------- 252 (355)
T 3p32_A 193 VDTFVLLTLARTG-DQLQGIKKG-----------VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPR-------- 252 (355)
T ss_dssp CSEEEEEEESSTT-CTTTTCCTT-----------SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTT--------
T ss_pred CCEEEEEECCCCC-ccHHHHHHh-----------HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhcccc--------
Confidence 9999999998765 222211110 13468999999999865433333333444333322100
Q ss_pred ccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 220 VTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
......+++++||++|+ +++|+++|.+++
T Consensus 253 -----------------~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 253 -----------------EALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp -----------------CCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred -----------------ccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 00112468999999999 999999998865
No 175
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=146.61 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHH---HHhh-cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---cc
Q 024474 20 LEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLL---QVFR-RKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QG 92 (267)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~ 92 (267)
-+..+++.++.++...+... ..+...++.+..... +..+ +.....|+++|+||||||||+|+|++...+ ..
T Consensus 28 ~r~~l~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 28 QRACLAEAITLVESTHSRKK--ELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CHHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHhccCcchh--HHHHHHHHHHHHhcccchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 37788999999888766532 223333333322211 1111 234789999999999999999999862100 00
Q ss_pred eeeeeccccc---------------------eeEee-----------c------ccCCCccccEEEEeCCCCCCchhhHH
Q 024474 93 TVTSMEPNED---------------------TFVLH-----------S------ESTKGKIKPVHLVDVPGHSRLRPKLD 134 (267)
Q Consensus 93 ~~~~~~~~~~---------------------~~~~~-----------~------~~~~~~~~~~~l~DtpG~~~~~~~~~ 134 (267)
.+...+++.. .+... . ..+...++.+.++||||.... ..
T Consensus 106 ~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~ 182 (349)
T 2www_A 106 SVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQS---EF 182 (349)
T ss_dssp EEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC--C---HH
T ss_pred EEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcchh---hh
Confidence 1111111100 00000 0 000123468999999996532 23
Q ss_pred hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 024474 135 EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSA 214 (267)
Q Consensus 135 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (267)
.....+|++++|+|++.+ ...+.... .+ ...|.++|+||+|+............+...+..
T Consensus 183 ~l~~~~d~vl~V~d~~~~-~~~~~i~~---~i--------l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~------- 243 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGG-DELQGIKR---GI--------IEMADLVAVTKSDGDLIVPARRIQAEYVSALKL------- 243 (349)
T ss_dssp HHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTT-------
T ss_pred hHHhhCCEEEEEEcCCcc-hhHHHhHH---HH--------HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHh-------
Confidence 456789999999999865 22211111 11 245789999999986321111111112111110
Q ss_pred cccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 215 VSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
... .. .....+++++||++|+ +++|+++|.+++
T Consensus 244 ~~~-----------------~a-~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 244 LRK-----------------RS-QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CC-----------------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCc-----------------cc-cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 00 0112367889999999 999999998764
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=2e-17 Score=153.68 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Cccc-c------eeeeec----cccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQ-G------TVTSME----PNEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~-~------~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+++|+.. .+.. . ...... ..+.+.......+....+.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 34679999999999999999999842 1100 0 000000 000111111111122346899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQME 202 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~ 202 (267)
|...+..+++.+|++|+|+|++++ ...+.... +..+.. .+.|+++|+||+|+.... .....+.++
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g-~~~~t~~~-~~~~~~------~~~p~ivviNKiD~~~~~-~~~~~~~l~ 154 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQG-VEPQSETV-WRQAEK------YKVPRIAFANKMDKTGAD-LWLVIRTMQ 154 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTC-SCHHHHHH-HHHHHH------TTCCEEEEEECTTSTTCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEEECCCC-cchhhHHH-HHHHHH------cCCCEEEEEECCCcccCC-HHHHHHHHH
Confidence 999999999999999999999986 33443333 333332 578999999999997653 333333333
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=4.9e-17 Score=151.32 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--Ccccc-------eee-----------eeccccceeEeecccCCCccccEEEE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG--STHQG-------TVT-----------SMEPNEDTFVLHSESTKGKIKPVHLV 121 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~--~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (267)
.+.++|+|+|+.|+|||||+++|+.. .+... ... ++......+.+.....++..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45679999999999999999999742 11110 000 01000011111110112344789999
Q ss_pred eCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 122 DVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 122 DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
||||+.+|...+..+++.+|++|+|+|++++ ... .....+..... .+.|+++|+||+|+.... .....+.+
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~-qt~~~~~~~~~------~~ip~ilviNKiD~~~~~-~~~~~~~l 158 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-VQP-QSETVWRQANK------YKVPRIAFVNKMDRMGAN-FLKVVNQI 158 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCC-CcH-HHHHHHHHHHH------cCCCEEEEEeCCCccccc-HHHHHHHH
Confidence 9999999999999999999999999999986 222 22233333322 678999999999997653 34444444
Q ss_pred HHHH
Q 024474 202 EKEI 205 (267)
Q Consensus 202 ~~~~ 205 (267)
+..+
T Consensus 159 ~~~l 162 (704)
T 2rdo_7 159 KTRL 162 (704)
T ss_pred HHHh
Confidence 4443
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.73 E-value=4.3e-17 Score=134.76 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhc---
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP--- 138 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--- 138 (267)
.+.++|+++|.+|+|||||+|+|++..+.. .....+++......... ..+..+++|||||+.++....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~~~~~~~t~~~~~~~~~--~~~~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR--VSPFQAEGLRPVMVSRT--MGGFTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC--CCSSCC-CCCCEEEEEE--ETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCcceeeEEEEEE--ECCeeEEEEECCCCCCcccchHHHHHHHH
Confidence 467899999999999999999999876421 11122222222211122 22358999999999877655444332
Q ss_pred ------cCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--CCHHHHHHH
Q 024474 139 ------QAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--HTKEFIRKQ 200 (267)
Q Consensus 139 ------~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~ 200 (267)
.+|++++|+|++.. . +... ..++..+..... .....|+++|+||+|+... ...++..+.
T Consensus 110 ~~l~~~~~~~il~V~~~d~~-~-~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVY-A-VDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp HHTTTCEECEEEEEEESSCS-C-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred HHHhcCCCCEEEEEEcCCCC-C-CCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 78999999988764 2 3322 234433332110 0123589999999999633 344444333
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=3.3e-17 Score=138.96 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred ccEEEEeCCCCCC-------------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 024474 116 KPVHLVDVPGHSR-------------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLIC 182 (267)
Q Consensus 116 ~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv 182 (267)
..+.+|||||+.+ +......+++.+|++++|+|+++..-.... ...+...+. ..+.|+++|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~-~~~i~~~~~-----~~~~~~i~v 204 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD-ALQLAKEVD-----PEGKRTIGV 204 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS-HHHHHHHHC-----SSCSSEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH-HHHHHHHhC-----CCCCcEEEE
Confidence 5799999999864 344566789999999999997432111111 112222222 267899999
Q ss_pred EecCCCCCCC
Q 024474 183 CNKTDKVTAH 192 (267)
Q Consensus 183 ~nK~Dl~~~~ 192 (267)
+||+|+....
T Consensus 205 ~NK~Dl~~~~ 214 (315)
T 1jwy_B 205 ITKLDLMDKG 214 (315)
T ss_dssp EECTTSSCSS
T ss_pred EcCcccCCcc
Confidence 9999997654
No 180
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.73 E-value=7.4e-18 Score=142.54 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=88.0
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..+.. ..++|+++++|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~~~--~~~~~iiL~~N 242 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITYPW--FQNSSVILFLN 242 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTSGG--GTTCEEEEEEE
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhhhc--cCCceEEEEEE
Confidence 468899999999999999999999999999999765 33 578888899998887543 26799999999
Q ss_pred cCCCCCC------------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEE
Q 024474 185 KTDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAE 246 (267)
Q Consensus 185 K~Dl~~~------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (267)
|+|+... .+.++..+.+.+.+..+. ..-..++.+++
T Consensus 243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~--------------------------~~~~~~i~~~~ 296 (327)
T 3ohm_A 243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN--------------------------PDSDKIIYSHF 296 (327)
T ss_dssp CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC--------------------------TTTTSCEEEEE
T ss_pred CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc--------------------------ccccCCcEEEE
Confidence 9998532 122333333222222110 00134567899
Q ss_pred eeeccCc-chhHHHHHHhh
Q 024474 247 ASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 247 ~Sa~~g~-i~~l~~~l~~~ 264 (267)
+||++++ |+.+++.+.+.
T Consensus 297 TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHH
Confidence 9999999 98888777654
No 181
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=7.7e-17 Score=145.88 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccc------c-----ceeeeeccccc----eeEeecccCCCccccEEEEeCCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--STH------Q-----GTVTSMEPNED----TFVLHSESTKGKIKPVHLVDVPG 125 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--~~~------~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~DtpG 125 (267)
+.++|+|+|+.++|||||..+|+.. ... . ..+....+... +.......+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 5679999999999999999998521 110 0 01111111100 11111111234457899999999
Q ss_pred CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHH
Q 024474 126 HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKE 204 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~ 204 (267)
+.+|.....+.++-+|++|+|+|+..+ .+.. ...+....+ .++|+++++||+|..... .....+.+++.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~G---V~~qT~~v~~~a~~------~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~ 179 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKG---VEAQTRKLMDVCRM------RATPVMTFVNKMDREALH-PLDVMADIEQH 179 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTB---SCHHHHHHHHHHHH------TTCCEEEEEECTTSCCCC-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCC---cccccHHHHHHHHH------hCCceEEEEecccchhcc-hhHhhhhhhhh
Confidence 999999999999999999999999987 3333 333333333 789999999999987654 44444444443
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=5.7e-17 Score=150.69 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--CCcccc-------eeeeecc----ccceeEeecccCCCccccEEEEeCCCCCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSMEP----NEDTFVLHSESTKGKIKPVHLVDVPGHSR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~DtpG~~~ 128 (267)
.+.++|+++|++|+|||||+|+|+. +.+... ......+ .+.+.......+....+.+++|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4567999999999999999999985 221110 0000000 00001101111122246899999999999
Q ss_pred chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 024474 129 LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEK 203 (267)
Q Consensus 129 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~ 203 (267)
+...+..+++.+|++|+|+|++++ ...... ..+..+.. .+.|+++|+||+|+... ......+.+++
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g-~~~~~~-~~~~~~~~------~~~p~ilviNK~Dl~~~-~~~~~~~~l~~ 153 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSG-VEPQTE-TVWRQATT------YGVPRIVFVNKMDKLGA-NFEYSVSTLHD 153 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTB-SCHHHH-HHHHHHHH------TTCCEEEEEECTTSTTC-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCC-CcHHHH-HHHHHHHH------cCCCEEEEEECCCcccc-chHHHHHHHHH
Confidence 999999999999999999999886 333333 33333332 57899999999999764 33334444443
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.70 E-value=1.8e-16 Score=131.59 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------HH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK-------LD 134 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-------~~ 134 (267)
...++|+++|.+|+|||||+|+|++..+.. +....+++..... ......+..+.+|||||+.++... +.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~--~~~~~~~t~~~~~--~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~ 112 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS--ISPFQSEGPRPVM--VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIK 112 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSSCCCSSCEE--EEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeeEE--EEEeeCCeEEEEEECCCCCCCccchHHHHHHHH
Confidence 457899999999999999999999876421 1111111111111 111233468999999999765422 11
Q ss_pred hh--hccCCEEEEEEeCCCCCCchHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC--CHHHHHHHHHHHHH
Q 024474 135 EF--LPQAAGIVFVVDALEFLPNCSAA-SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH--TKEFIRKQMEKEID 206 (267)
Q Consensus 135 ~~--~~~~d~ii~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~l~~~~~ 206 (267)
.+ .+.+|++++|+|++.. ++... ..++..+..... .....|+++|+||+|+.... ..++..+.....+.
T Consensus 113 ~~~~~~~~d~il~v~~~d~~--~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~ 186 (270)
T 1h65_A 113 SFLLDKTIDVLLYVDRLDAY--RVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALL 186 (270)
T ss_dssp HHTTTCEECEEEEEEESSCC--CCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCEEEEEEeCCCC--cCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHH
Confidence 22 2479999999998653 23322 344444433210 01226999999999997543 45554444444333
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.69 E-value=5.2e-17 Score=139.19 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccee
Q 024474 18 KELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRDGSTH---QGTV 94 (267)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~---~~~~ 94 (267)
..-|..+.+.++.++.......+.. ...+..+ .....+...++++|++|+|||||++.|.+.... ...+
T Consensus 18 ~~~r~~l~~~i~~ie~~~~~~~~~~--~~~~~~l------~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 18 QGERATLAQAMTLVESRHPRHQALS--TQLLDAI------MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp TTCHHHHHHHHHHHHCCCHHHHHHH--HHHHHHH------GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHhhhhHhhcCCchhhhHH--HHHHHhC------CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3347788888888877655433211 1111111 112456788999999999999999999642100 0011
Q ss_pred eeeccccce---------------------eEeecc-----------------cCCCccccEEEEeCCCCCCchhhHHhh
Q 024474 95 TSMEPNEDT---------------------FVLHSE-----------------STKGKIKPVHLVDVPGHSRLRPKLDEF 136 (267)
Q Consensus 95 ~~~~~~~~~---------------------~~~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~ 136 (267)
.+..+.... +..... .....++.+.+|||||..+.... .
T Consensus 90 ~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~ 166 (341)
T 2p67_A 90 IAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---V 166 (341)
T ss_dssp EEECCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---H
T ss_pred EeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---H
Confidence 111111000 000000 00122468999999998764433 4
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
.+.+|++++|+|++.+ ...+..... . .+.|.++|+||+|+..........+.+++.+..+ .
T Consensus 167 ~~~aD~vl~Vvd~~~~-~~~~~l~~~---~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~-------~ 227 (341)
T 2p67_A 167 ARMVDCFISLQIAGGG-DDLQGIKKG---L--------MEVADLIVINKDDGDNHTNVAIARHMYESALHIL-------R 227 (341)
T ss_dssp HTTCSEEEEEECC-------CCCCHH---H--------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS-------C
T ss_pred HHhCCEEEEEEeCCcc-HHHHHHHHh---h--------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc-------c
Confidence 6889999999999764 211111100 0 2457899999999864322222222222222110 0
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
.. .. .....++++||++|+ +++|+++|.+++
T Consensus 228 ~~-----------------~~-~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 228 RK-----------------YD-EWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CS-----------------BT-TBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cc-----------------cc-CCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 00 012368999999999 999999998764
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.68 E-value=4.3e-16 Score=136.10 Aligned_cols=159 Identities=16% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc-------hhhHHhh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL-------RPKLDEF 136 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~ 136 (267)
...|+++|++|||||||+++|++... .+..+..++..........++ ...+.+|||||+.+. .......
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~---~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~ 232 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP---KIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRH 232 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC---EECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc---cccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHH
Confidence 45799999999999999999988642 222222221111111122222 246899999998532 1122334
Q ss_pred hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 024474 137 LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVS 216 (267)
Q Consensus 137 ~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (267)
+..++.+++++|++ . ..+..+..+..++..... .....|.++|+||+|+... ...+.+.+.+.
T Consensus 233 ~era~~lL~vvDls-~-~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~---------- 295 (416)
T 1udx_A 233 IARTRVLLYVLDAA-D-EPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE----EAVKALADALA---------- 295 (416)
T ss_dssp HTSSSEEEEEEETT-S-CHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH----HHHHHHHHHHH----------
T ss_pred HHHHHhhhEEeCCc-c-CCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH----HHHHHHHHHHH----------
Confidence 56799999999998 2 456666666666554321 0135789999999998643 12222222111
Q ss_pred cccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 217 EADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..+..++++||++++ +++|+++|.+.+
T Consensus 296 ----------------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 296 ----------------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp ----------------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 112468999999999 999999998765
No 186
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.67 E-value=1.5e-16 Score=134.99 Aligned_cols=73 Identities=29% Similarity=0.330 Sum_probs=63.9
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+.+.+++|||+|++.++..|..|+++++++|||+|++ +. +++.+...|+..+..... ..++|+++++
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~-nr~~es~~~~~~i~~~~~--~~~~piiLv~ 235 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNT-SRLTESIAVFKDIMTNEF--LKGAVKLIFL 235 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCS-BHHHHHHHHHHHHHHCGG--GTTSEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccccc-chHHHHHHHHHHHhhhhc--cCCCeEEEEE
Confidence 3468999999999999999999999999999999998 43 678889999999887643 2689999999
Q ss_pred ecCCCC
Q 024474 184 NKTDKV 189 (267)
Q Consensus 184 nK~Dl~ 189 (267)
||+|+.
T Consensus 236 NK~DL~ 241 (340)
T 4fid_A 236 NKMDLF 241 (340)
T ss_dssp ECHHHH
T ss_pred ECchhh
Confidence 999985
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.67 E-value=5.8e-16 Score=146.71 Aligned_cols=144 Identities=18% Similarity=0.275 Sum_probs=97.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cccc-----ee-----------eeeccccceeEeec---------ccCCCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS--THQG-----TV-----------TSMEPNEDTFVLHS---------ESTKGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~--~~~~-----~~-----------~~~~~~~~~~~~~~---------~~~~~~ 114 (267)
.+.++|+|+|++|+|||||+++|+... .... .. .++......+.+.. ...++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356799999999999999999998641 1000 00 01111111111110 012344
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC---C
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT---A 191 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~---~ 191 (267)
.+.+++|||||+.+|...+..+++.+|++|+|+|++++ .+.+.... +..... .++|+++|+||+|+.. .
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g-~~~qt~~~-~~~~~~------~~~p~ilviNK~D~~~~e~~ 168 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG-VCVQTETV-LRQALG------ERIKPVVVINKVDRALLELQ 168 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB-SCHHHHHH-HHHHHH------TTCEEEEEEECHHHHHHTSC
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHH-HHHHHH------cCCCeEEEEECCCcchhhhc
Confidence 67899999999999999999999999999999999986 34444333 333332 5789999999999864 2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 024474 192 HTKEFIRKQMEKEIDKLRASRS 213 (267)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~ 213 (267)
.+.++....+.+.+..++....
T Consensus 169 ~~~~e~~~~~~~~~~~i~~~l~ 190 (842)
T 1n0u_A 169 VSKEDLYQTFARTVESVNVIVS 190 (842)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776655543
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=1.3e-16 Score=137.75 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cccc----------ceeEeec----------------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE----------DTFVLHS---------------------- 108 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~~~----------~~~~~~~---------------------- 108 (267)
..+.|+++|++|||||||+|+|++..+........ .|+. ..+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 55699999999999999999999976522111100 0000 0000000
Q ss_pred ----------------ccCCCccccEEEEeCCCCCCc-------------hhhHHhhhccCCEEEEEEeCCCCCCchHHH
Q 024474 109 ----------------ESTKGKIKPVHLVDVPGHSRL-------------RPKLDEFLPQAAGIVFVVDALEFLPNCSAA 159 (267)
Q Consensus 109 ----------------~~~~~~~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~ 159 (267)
.........+.+|||||+.++ ......|++++|++|+|+|+.+........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 000112346899999998876 556778999999999999976531112222
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 160 SEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
..++..+ ...+.|+++|+||+|+....
T Consensus 193 ~~l~~~~------~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 193 IKISREV------DPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHS------CTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHh------cccCCCEEEEEeCCccCCCc
Confidence 2222222 13678999999999997543
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=5.1e-17 Score=141.59 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeec----------------ccCCC-ccccEEEEeCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHS----------------ESTKG-KIKPVHLVDVPG 125 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~-~~~~~~l~DtpG 125 (267)
++|+++|.||+|||||+|+|++....... .++..++.+...+.. ..+++ ....+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987521111 122223322211110 00111 235799999999
Q ss_pred CCCc----hhhHH---hhhccCCEEEEEEeCCCC
Q 024474 126 HSRL----RPKLD---EFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 126 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 152 (267)
+.+. +.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22333 356899999999999874
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.65 E-value=1.9e-16 Score=136.46 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cce-eeeecccc---------------------ceeEe----------ec
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTH-QGT-VTSMEPNE---------------------DTFVL----------HS 108 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~-~~~-~~~~~~~~---------------------~~~~~----------~~ 108 (267)
...++|+++|.+|+|||||+|+|++..+. ... +.+..|+. .++.. ..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998753 111 11111110 00000 00
Q ss_pred ----cc----------CCCccccEEEEeCCCCCC-------------chhhHHhhhccCCE-EEEEEeCCCCCCchHHHH
Q 024474 109 ----ES----------TKGKIKPVHLVDVPGHSR-------------LRPKLDEFLPQAAG-IVFVVDALEFLPNCSAAS 160 (267)
Q Consensus 109 ----~~----------~~~~~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~~~~~~~~ 160 (267)
.. .......+.+|||||... +..+...|++.++. +++|+|++.. -.-....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~-~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-LANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC-GGGCHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc-cchhHHH
Confidence 00 001135799999999643 34456677766664 5555666543 1111222
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
.++..+ . ..+.|+++|+||+|+...... ..+.++ . . .+.+. .+
T Consensus 188 ~i~~~~-~-----~~~~~~i~V~NK~Dl~~~~~~--~~~~~~--------------~----~---------~~~l~--~~ 230 (353)
T 2x2e_A 188 KVAKEV-D-----PQGQRTIGVITKLDLMDEGTD--ARDVLE--------------N----K---------LLPLR--RG 230 (353)
T ss_dssp HHHHHH-C-----TTCTTEEEEEECGGGSCTTCC--CHHHHT--------------T----C---------SSCCT--TC
T ss_pred HHHHHh-C-----cCCCceEEEeccccccCcchh--HHHHHh--------------C----C---------ccccc--CC
Confidence 233322 2 267899999999999754321 000000 0 0 00000 12
Q ss_pred eeEEEEeeeccCc-chhHHHHHHh
Q 024474 241 KVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++||++|+ ++++++++.+
T Consensus 231 ~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 231 YIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ceEEEeCCcccccccccHHHHHHH
Confidence 2467889999999 9999988865
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=4.5e-16 Score=125.08 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee--cccc-----------ce-eEeec---ccC----------CCc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM--EPNE-----------DT-FVLHS---EST----------KGK 114 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~--~~~~-----------~~-~~~~~---~~~----------~~~ 114 (267)
.+.++|+++|.+|+|||||+++|+........+..+ .+.. .. ..... ... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356799999999999999999998652111111111 1110 00 00000 000 112
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC--C
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA--H 192 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~--~ 192 (267)
...+.+|||+|+..... .+....+.+++|+|++... .....+. .. .+.|+++|+||+|+... .
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~---~~~~~~~-~~--------~~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD---DVVEKHP-EI--------FRVADLIVINKVALAEAVGA 172 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT---THHHHCH-HH--------HHTCSEEEEECGGGHHHHTC
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc---hhhhhhh-hh--------hhcCCEEEEecccCCcchhh
Confidence 35789999999522111 1113578899999998752 1111111 11 24678999999998642 2
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 193 TKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
..++..+.+. .+ .....++++||++|+ +++++++|.+.+
T Consensus 173 ~~~~~~~~~~----~~------------------------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 173 DVEKMKADAK----LI------------------------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp CHHHHHHHHH----HH------------------------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----Hh------------------------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 3333322222 11 123478999999999 999999998765
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=138.02 Aligned_cols=121 Identities=22% Similarity=0.331 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeE-eeccc--------------------CC--C------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFV-LHSES--------------------TK--G------ 113 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------~~--~------ 113 (267)
..++|+|+|.+|+|||||+|+|++..+....+ +..+++.... +.... .. +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~v-s~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRV-GPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCC-CSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCcc-CCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45799999999999999999999987531111 1111111110 00000 00 0
Q ss_pred --------c-cccEEEEeCCCCCC-----------chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCC
Q 024474 114 --------K-IKPVHLVDVPGHSR-----------LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVV 173 (267)
Q Consensus 114 --------~-~~~~~l~DtpG~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (267)
. ...+.+|||||+.+ +......++..+|++|+|+|+++. ........++..+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-~~~~~~~~~l~~l~------ 215 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-EISDEFSEAIGALR------ 215 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-CCCHHHHHHHHHTT------
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-CCCHHHHHHHHHHH------
Confidence 0 03689999999875 446677788999999999999874 23344445544432
Q ss_pred CCCCcEEEEEecCCCCCC
Q 024474 174 KKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 174 ~~~~pvivv~nK~Dl~~~ 191 (267)
..+.|+++|+||+|+...
T Consensus 216 ~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 216 GHEDKIRVVLNKADMVET 233 (550)
T ss_dssp TCGGGEEEEEECGGGSCH
T ss_pred hcCCCEEEEEECCCccCH
Confidence 256899999999999754
No 193
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=3e-16 Score=144.71 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=84.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--CCcccc-------eeeeeccc----cceeEeecccCCCccccEEEEeCCCCCCch
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD--GSTHQG-------TVTSMEPN----EDTFVLHSESTKGKIKPVHLVDVPGHSRLR 130 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~--~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 130 (267)
.++|+|+|+.++|||||..+|+. +..... ......+. +-+.......+..+++.++|+|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999863 111110 00100000 112222233345566889999999999999
Q ss_pred hhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC
Q 024474 131 PKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT 193 (267)
Q Consensus 131 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~ 193 (267)
....+.++-+|++|+|+|+.++- .......+....+ .++|.++++||+|....+.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV--~~qT~~v~~~a~~------~~lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGV--QAQTRILFHALRK------MGIPTIFFINKIDQNGIDL 136 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTT--CSHHHHHHHHHHH------HTCSCEECCEECCSSSCCS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCC--cHHHHHHHHHHHH------cCCCeEEEEeccccccCCH
Confidence 99999999999999999999862 2223333333333 6789999999999877654
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=3.6e-16 Score=131.66 Aligned_cols=162 Identities=15% Similarity=0.233 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-Ccccceee----eeccccc-eeEeecccCCCccccEEEEeCCCC-------CC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG-STHQGTVT----SMEPNED-TFVLHSESTKGKIKPVHLVDVPGH-------SR 128 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~-~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~l~DtpG~-------~~ 128 (267)
.-.++|+++|++|+|||||+++|.+. .++...+. ...++.. ..........+....+++|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45579999999999999999998875 33222211 0011100 000001111333457899999998 44
Q ss_pred chhhHH-------hhhcc-------------CCEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 129 LRPKLD-------EFLPQ-------------AAGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 129 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
+..... .+++. +++++|+.+++.. +++... ..+..+ ..+.|+++|+||.|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l-------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAI-------HNKVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHH-------TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHH-------HhcCCEEEEEEeCC
Confidence 555444 44433 3446666666442 233332 222222 14578999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCcchhHHHHHHhh
Q 024474 188 KVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGEISQVEQFIREQ 264 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~i~~l~~~l~~~ 264 (267)
+..........+.+.+.+. ..++.|+++||++|+++++++++.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~--------------------------------~~~~~~~e~Sa~~~~v~e~f~~l~~~ 211 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIE--------------------------------EHNIKIYHLPDAESDEDEDFKEQTRL 211 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHH--------------------------------HTTCCCCCCC---------CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--------------------------------HcCCeEEecCCccccccHHHHHHHHH
Confidence 9753222212222222222 12356899999999877776666554
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.6e-14 Score=134.83 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Ccccc-eee-----------eeccccceeEeecccCCCccccEEEEe
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG--------STHQG-TVT-----------SMEPNEDTFVLHSESTKGKIKPVHLVD 122 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~--------~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D 122 (267)
+.++|+|+|+.++|||||..+|+.. ..... ... |+.....++.+.......+.+.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4579999999999999999998521 11110 011 111122222222222233457899999
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH 192 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 192 (267)
||||.+|.....+.++-+|++|+|+|+..+ -.......+++..+ .++|.++|+||+|.....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveG--V~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSG--VEPQSETVWRQANK------YGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTC--SCHHHHHHHHHHHH------HTCCEEEEEECSSSTTCC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCC--CchhHHHHHHHHHH------cCCCeEEEEccccccCcc
Confidence 999999999999999999999999999987 22333444444443 689999999999987553
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=132.06 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceee----eeccccceeEeecccC--CCccccEEEEeCCCCCCch-----
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVT----SMEPNEDTFVLHSEST--KGKIKPVHLVDVPGHSRLR----- 130 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~DtpG~~~~~----- 130 (267)
.-.++|+++|++|+|||||+|.|++..+...... ...++.. .......+ .+....+++|||+|+....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 3456899999999999999999998765211110 0011111 11111111 2333468999999987542
Q ss_pred --hh-------HHh-----------hhccC--CEEEEEEeCCCCCCchHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 131 --PK-------LDE-----------FLPQA--AGIVFVVDALEFLPNCSAAS-EYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 131 --~~-------~~~-----------~~~~~--d~ii~v~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.. ... ++.++ |+++|+++++. .++.... .++..+ . .++|+|+|+||+|
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~--~~L~~~d~~~lk~L-~------~~v~iIlVinK~D 178 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG--HGLKPLDIEFMKRL-H------EKVNIIPLIAKAD 178 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C--CSCCHHHHHHHHHH-T------TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc--cCCCHHHHHHHHHH-h------ccCcEEEEEEccc
Confidence 11 111 23333 45666666542 1233333 444443 2 4689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 024474 188 KVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 188 l~~~~~~~~~~~~l~~~~~ 206 (267)
+..........+.+.+.+.
T Consensus 179 ll~~~ev~~~k~~i~~~~~ 197 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQ 197 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 9754333333344444443
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.58 E-value=2e-15 Score=124.54 Aligned_cols=134 Identities=21% Similarity=0.161 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCCCchhh------HHhhhccCCEEEEEEeCCCCCCchHHHHHHH---HHHHhcCCCCCCCCcEEEEEecC
Q 024474 116 KPVHLVDVPGHSRLRPK------LDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
+.+.+|||||+.+.... ...++.. +++++++|+....+ ........ ..... ..+.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-~~~~~~~~~~~~~~~~-----~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-PNDYCFVRFFALLIDL-----RLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-HHHHHHHHHHHHHHHH-----HHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-HHHHHHHHHHHHHHhc-----ccCCCeEEEEecc
Confidence 58999999998764332 1134566 89999999875422 22222111 11111 1468999999999
Q ss_pred CCCCCCCHHHHHHHHH---HHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 187 DKVTAHTKEFIRKQME---KEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
|+.......++.+.++ .....+.... ...+... +.+. -...+......++++||++|+ +++|+++|.
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~---~~~~~~~-~~l~-----~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~ 252 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDP---SMQGLMA-YKMC-----SMMTEVLPPVRVLYLSAKTREGFEDLETLAY 252 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCC---SHHHHHH-HHHH-----HHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccc---cccchhH-hHHH-----HHHHHhcCcccceEEEecCcccHHHHHHHHH
Confidence 9875432222222221 1111110000 0000000 0000 000011122368999999999 999999998
Q ss_pred hhc
Q 024474 263 EQV 265 (267)
Q Consensus 263 ~~~ 265 (267)
+.+
T Consensus 253 ~~~ 255 (262)
T 1yrb_A 253 EHY 255 (262)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 198
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.57 E-value=2.8e-15 Score=128.87 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=82.4
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCC---------CCchHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEF---------LPNCSAASEYLYDILTNSTVVKKKIPVLICCNK 185 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK 185 (267)
.+.+++|||+|++.++..|..++++++++|||+|+++. .+++.+...|+..+..... ..++|+++|+||
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~--~~~~piILv~NK 277 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV--FSNVSIILFLNK 277 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG--GTTSEEEEEEEC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh--hCCCCEEEEEEC
Confidence 47899999999999999999999999999999999982 2578889999999887532 267999999999
Q ss_pred CCCCCC------------------CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccc--cceeEEE
Q 024474 186 TDKVTA------------------HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQC--HNKVSVA 245 (267)
Q Consensus 186 ~Dl~~~------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 245 (267)
+|+... ...++..+.+...+..+ ... ..++.++
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l---------------------------~~~~~~~~~~~~ 330 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGK---------------------------RRDQQQRPLYHH 330 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTT---------------------------CSSCC--CCEEE
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHh---------------------------hcccCCCceEEE
Confidence 998521 12222222221111110 000 2356789
Q ss_pred EeeeccCc-chhHHHHHHhhc
Q 024474 246 EASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 246 ~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
++||++|+ |+++++++.+.+
T Consensus 331 ~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 331 FTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCchhHHHHHHHHHHHH
Confidence 99999999 999999987653
No 199
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=113.68 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHH---HHHHhcCCCCCCCCcEEEEEecC-CCCCCCCHHHHHH
Q 024474 124 PGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYL---YDILTNSTVVKKKIPVLICCNKT-DKVTAHTKEFIRK 199 (267)
Q Consensus 124 pG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~pvivv~nK~-Dl~~~~~~~~~~~ 199 (267)
+|+..+++.|++|+.++|++|||+|+++. ...+ ....+ ..++.... ...+.|++|++||. |+..+.+..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~-~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTT-CCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccH-hHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 38889999999999999999999999986 3343 55555 44444321 12688999999995 8888888877766
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 200 QMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
.+. ...+...+.+..|||++|+ +.+.++||.++++
T Consensus 187 ~L~--------------------------------L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELH--------------------------------LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTT--------------------------------GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcC--------------------------------CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 554 1112457889999999999 9999999998875
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=4e-14 Score=121.21 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeeccc-------CCC---ccccEEEEeCCCCCCchh
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSES-------TKG---KIKPVHLVDVPGHSRLRP 131 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~---~~~~~~l~DtpG~~~~~~ 131 (267)
..+|+++|.||+|||||+|+|++..+.... .+++.++.+...+.... +.. ....+++|||||+.++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999987632111 12344444333221100 000 014699999999987542
Q ss_pred -------hHHhhhccCCEEEEEEeCCC
Q 024474 132 -------KLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 132 -------~~~~~~~~~d~ii~v~d~~~ 151 (267)
....+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23346789999999999986
No 201
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.54 E-value=5.8e-15 Score=128.04 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=64.3
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCC----------CCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALE----------FLPNCSAASEYLYDILTNSTVVKKKIPVLICCN 184 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~n 184 (267)
.+.+++|||+|++.++..|..|+++++++|||||+++ . +++.....|+..+..... ..++|+++|+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~-ns~~e~~~~~~~i~~~~~--~~~~piiLvgN 292 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQT-NRLQEALNLFKSIWNNRW--LRTISVILFLN 292 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCS-BHHHHHHHHHHHHHTCTT--CSSCCEEEEEE
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECccccccccccccc-chHHHHHHHHHHHHhccc--CCCCeEEEEEE
Confidence 3789999999999999999999999999999999998 5 789999999999887532 26789999999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|+|+.
T Consensus 293 K~DL~ 297 (402)
T 1azs_C 293 KQDLL 297 (402)
T ss_dssp CHHHH
T ss_pred Chhhh
Confidence 99984
No 202
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.54 E-value=1.3e-14 Score=124.30 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=62.1
Q ss_pred ccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCC----------CCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 024474 114 KIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDAL----------EFLPNCSAASEYLYDILTNSTVVKKKIPVLICC 183 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~ 183 (267)
+.+.+++|||+|+++++..+..|+++++++|+|+|++ +. +++.+...|+..+..... ..++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~-~s~~~~~~~~~~i~~~~~--~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK-NRMMETKELFDWVLKQPC--FEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTS-BHHHHHHHHHHHHHTCGG--GSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccch-hHHHHHHHHHHHHHhccc--cCCCeEEEEE
Confidence 5678999999999999999999999999999999997 44 678899999988887532 2679999999
Q ss_pred ecCCCC
Q 024474 184 NKTDKV 189 (267)
Q Consensus 184 nK~Dl~ 189 (267)
||+|+.
T Consensus 258 NK~DL~ 263 (354)
T 2xtz_A 258 NKFDIF 263 (354)
T ss_dssp ECHHHH
T ss_pred ECcchh
Confidence 999984
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=3.8e-14 Score=131.40 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-ccce-eeeecc-------ccceeEe--------------------------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT-VTSMEP-------NEDTFVL-------------------------- 106 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~-~~~~~~-------~~~~~~~-------------------------- 106 (267)
...++|+++|.+++|||||+|+|++..+ +.+. ..|..| ....+..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999765 2221 111000 0000000
Q ss_pred ------------ecccCCCccccEEEEeCCCCCCc-------------hhhHHhhh-ccCCEEEEEEeCCCCCCchHHHH
Q 024474 107 ------------HSESTKGKIKPVHLVDVPGHSRL-------------RPKLDEFL-PQAAGIVFVVDALEFLPNCSAAS 160 (267)
Q Consensus 107 ------------~~~~~~~~~~~~~l~DtpG~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 160 (267)
...........+.|+||||.... ......|+ ..+|++++|+|++.... .....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-NSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-SCHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-hhHHH
Confidence 00000111235889999997651 12334455 46899999999987422 12221
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccc
Q 024474 161 EYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHN 240 (267)
Q Consensus 161 ~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (267)
..+..+ . ..+.|+++|+||+|+........ .+. . . .. +....+
T Consensus 208 ~ll~~L-~-----~~g~pvIlVlNKiDlv~~~~~~~---~il---~------~--------~~-----------~~l~lg 250 (772)
T 3zvr_A 208 KIAKEV-D-----PQGQRTIGVITKLDLMDEGTDAR---DVL---E------N--------KL-----------LPLRRG 250 (772)
T ss_dssp HHHHHH-C-----TTCSSEEEEEECTTSSCTTCCSH---HHH---T------T--------CS-----------SCCSSC
T ss_pred HHHHHH-H-----hcCCCEEEEEeCcccCCcchhhH---HHH---H------H--------Hh-----------hhhhcc
Confidence 222222 2 26789999999999975432110 000 0 0 00 000012
Q ss_pred eeEEEEeeeccCc-chhHHHHHHh
Q 024474 241 KVSVAEASGLTGE-ISQVEQFIRE 263 (267)
Q Consensus 241 ~~~~~~~Sa~~g~-i~~l~~~l~~ 263 (267)
...++++||++|+ +++|.+.|.+
T Consensus 251 ~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 251 YIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCceEEecccccccchhHHHHHHH
Confidence 3467889999999 9999998876
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=7.1e-14 Score=119.36 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCHHHHHHHHHc------C
Q 024474 14 EQWKKELEEWLNRGIEFINQIPPTQLYIACAVLLLTTALLLLLQVFRRKKSTTIVLAGLSGSGKTVLFYQLRD------G 87 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~------~ 87 (267)
+..+..-+..+.+.+++++.......+-. ...+..+ .+...++..++++|++|||||||+|.|.+ +
T Consensus 13 ~~~~~~~r~~l~r~i~~ie~~~~~~~~~~--~~~l~~i------~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 13 ERLLAGDRAALARAITLAESRRADHRAAV--RDLIDAV------LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHTTCHHHHHHHHHHHTCSSHHHHHHH--HHHHHHH------GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHeeCCcccccCh--HHHHHhC------CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 33333347778888877766544433311 1112221 12245677899999999999999999974 2
Q ss_pred Ccccceeeeeccccce--------------------eEee-cc-----------------cCCCccccEEEEeCCCCCCc
Q 024474 88 STHQGTVTSMEPNEDT--------------------FVLH-SE-----------------STKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 88 ~~~~~~~~~~~~~~~~--------------------~~~~-~~-----------------~~~~~~~~~~l~DtpG~~~~ 129 (267)
.. .+.+..+.... .... .. .....++.+.++||||....
T Consensus 85 ~v---~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~ 161 (337)
T 2qm8_A 85 KV---AVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 161 (337)
T ss_dssp CE---EEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC
T ss_pred EE---EEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 21 11111111100 0000 00 01112468999999998753
Q ss_pred hhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHHHHHHH
Q 024474 130 RPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEKEIDKL 208 (267)
Q Consensus 130 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~~~~~~ 208 (267)
.. .....+|.+++|+|+..+ +..+.....+ ...|.++|+||+|+..... .....+.+...
T Consensus 162 ~~---~v~~~~d~vl~v~d~~~~-~~~~~i~~~i-----------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a---- 222 (337)
T 2qm8_A 162 ET---AVADLTDFFLVLMLPGAG-DELQGIKKGI-----------FELADMIAVNKADDGDGERRASAAASEYRAA---- 222 (337)
T ss_dssp HH---HHHTTSSEEEEEECSCC-------CCTTH-----------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHH----
T ss_pred hh---hHHhhCCEEEEEEcCCCc-ccHHHHHHHH-----------hccccEEEEEchhccCchhHHHHHHHHHHHH----
Confidence 32 334689999999998653 2111111111 1234577889999753211 11111111111
Q ss_pred HhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 209 RASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...+... .. ....+++.+||++|+ +++|.++|.+..
T Consensus 223 ---~~l~~~~-----------~~-------~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 223 ---LHILTPP-----------SA-------TWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ---HTTBCCS-----------BT-------TBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---HHhcccc-----------cc-------CCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1000000 00 002357889999999 999999998754
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1e-13 Score=119.23 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=75.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchh-------hHHhhh
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRP-------KLDEFL 137 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-------~~~~~~ 137 (267)
.+|+++|.||||||||+|+|++... .+..++.++.+.......+.+ .+++++||||..+... ..-..+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~---~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES---EAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC---CGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 4899999999999999999998653 344444444444433333344 5799999999754321 233467
Q ss_pred ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 138 PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 138 ~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+|++++|+|++++....+.+...+... .......|.++++||.|..
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~----~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGV----GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHT----TEEETCCCCCEEEEECSSS
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHh----hHhhccCChhhhhhHhhhh
Confidence 88999999999987522222222222221 1112467889999999964
No 206
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=8.7e-14 Score=117.12 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=95.2
Q ss_pred HHHHHHHcCCcc-cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchH
Q 024474 79 VLFYQLRDGSTH-QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCS 157 (267)
Q Consensus 79 sLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~ 157 (267)
+|+.+++.+.|. ..+.+++ ++........++ .+++||| +++++.+++.+++++|++|+|+|++++..++.
T Consensus 32 sl~~~~~~~~f~~~~~~pTi----Gd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~ 102 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYV----GDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY 102 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCT----TCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred cEEEEEEcccccccCCCCCC----ccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence 577777777765 4433333 333222221122 7999999 88999999999999999999999998744677
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCccccc
Q 024474 158 AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQ 237 (267)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (267)
.+..|+..+.. .++|+++|+||+||...... +...+..+.+ .
T Consensus 103 ~l~~~l~~~~~------~~~piilv~NK~DL~~~~~v----~~~~~~~~~~---------------------------~- 144 (301)
T 1u0l_A 103 IIDKFLVLAEK------NELETVMVINKMDLYDEDDL----RKVRELEEIY---------------------------S- 144 (301)
T ss_dssp HHHHHHHHHHH------TTCEEEEEECCGGGCCHHHH----HHHHHHHHHH---------------------------T-
T ss_pred HHHHHHHHHHH------CCCCEEEEEeHHHcCCchhH----HHHHHHHHHH---------------------------h-
Confidence 88888876543 57899999999999753221 1122222211 0
Q ss_pred ccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 238 CHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 238 ~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.. +.++++||++|+ ++++++++...
T Consensus 145 -~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 145 -GL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp -TT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred -hh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 01 468999999999 99999988653
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.47 E-value=3.5e-13 Score=108.46 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=86.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccc--------------eeEee-cccC--------------
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNED--------------TFVLH-SEST-------------- 111 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~-------------- 111 (267)
..+.++|+++|.+|||||||+++|+...+....+.++..... ..... ....
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 346789999999999999999999876443322322221100 01111 0000
Q ss_pred CCccccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 112 KGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 112 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
......+.++|++|...... .+-...+.++.++|............ .. .+.|.++|+||+|+...
T Consensus 115 ~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~~~----~~--------~~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEKHP----GI--------MKTADLIVINKIDLADA 179 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTTCH----HH--------HTTCSEEEEECGGGHHH
T ss_pred hcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhhhh----hH--------hhcCCEEEEeccccCch
Confidence 01123678888888432111 12223456677888543211111001 11 23678999999998642
Q ss_pred --CCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 192 --HTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 192 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...++..+.+ ..+ .....++++||++|+ +++++++|.+.+
T Consensus 180 ~~~~~~~~~~~~----~~~------------------------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 180 VGADIKKMENDA----KRI------------------------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HTCCHHHHHHHH----HHH------------------------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHh------------------------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1222222222 111 123478999999999 999999998764
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.45 E-value=2.4e-13 Score=117.02 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=56.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc--eeeeeccccceeEeecc---------cCC-----CccccEEEEeCCCCCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQG--TVTSMEPNEDTFVLHSE---------STK-----GKIKPVHLVDVPGHSR 128 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~l~DtpG~~~ 128 (267)
++|+++|.||+|||||+|+|++...... ..+|+.++.+...+... ... .....+++|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999987542111 11234444332221100 001 1235799999999876
Q ss_pred ch-------hhHHhhhccCCEEEEEEeCCC
Q 024474 129 LR-------PKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 129 ~~-------~~~~~~~~~~d~ii~v~d~~~ 151 (267)
.. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456899999999999986
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=111.92 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHH---HHHhcCCCCCCCCcEEEEEec-CCCCCCCCHHHHH
Q 024474 123 VPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLY---DILTNSTVVKKKIPVLICCNK-TDKVTAHTKEFIR 198 (267)
Q Consensus 123 tpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~pvivv~nK-~Dl~~~~~~~~~~ 198 (267)
.+|+..+++.|++|+.++|++|||+|+++. ..++ ....+. .++.... ...+.|++|++|| .|+..+.+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr-eRle-ak~EL~eL~~mL~e~~-~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAH-KRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTT-CCCC-HHHHHHHHHHHHCHHH-HCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcH-hHHH-HHHHHHHHHHHhcchh-hcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 468899999999999999999999999987 3344 444333 4443211 0167899999997 6998888887776
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhcC
Q 024474 199 KQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~~ 266 (267)
+.+. ...+...+.+..|||+||+ +.+.++||.+.++
T Consensus 271 e~L~--------------------------------L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELH--------------------------------LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTT--------------------------------GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcC--------------------------------CccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 6544 1112457889999999999 9999999999875
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.24 E-value=7.8e-12 Score=108.04 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=52.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccce--eeeeccccceeEeecccC-------C---CccccEEEEeCCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGT--VTSMEPNEDTFVLHSEST-------K---GKIKPVHLVDVPGHSR 128 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l~DtpG~~~ 128 (267)
.....+|+++|.+|+|||||+|+|++..+.... .+|..++.+...+..... . .....+++|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 356789999999999999999999987542111 123334333332211000 0 0023599999999886
Q ss_pred chh-------hHHhhhccCCEEEEEEeCCCC
Q 024474 129 LRP-------KLDEFLPQAAGIVFVVDALEF 152 (267)
Q Consensus 129 ~~~-------~~~~~~~~~d~ii~v~d~~~~ 152 (267)
..+ .+..+++.+|++++|+|+++.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 544 456788999999999999753
No 211
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=105.33 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=60.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecc-cCCCccccEEEEeCCCCCCch-------------
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRLR------------- 130 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~------------- 130 (267)
++++|+|++|+|||||+|.|.+..+.........+.......... ...+-...++++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 349999999999999999999875422111111111110011110 111112368999999976421
Q ss_pred -hhHHhhhc-------------c--CCE-EEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 131 -PKLDEFLP-------------Q--AAG-IVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 131 -~~~~~~~~-------------~--~d~-ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..+..++. . +|+ ++|+.|+..+ +......+...+. .+.|+|+|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~---l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS---LKSLDLVTMKKLD------SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC------CHHHHHHHHHTC------SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC---CCHHHHHHHHHHh------hCCCEEEEEcchhccch
Confidence 11111111 1 233 5556666544 3333333333332 57899999999998754
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.09 E-value=9e-11 Score=98.64 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=77.2
Q ss_pred CccccEEEEe-CCC-----CCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 113 GKIKPVHLVD-VPG-----HSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 113 ~~~~~~~l~D-tpG-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
|..+.+..+| +.| ++++..+.+.+++++|++++|+|++++..++..+..|+..+.. .++|+++|+||+
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------~~~~~ilV~NK~ 120 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------FKVEPVIVFNKI 120 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH------TTCEEEEEECCG
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh------CCCCEEEEEEcc
Confidence 3345566665 333 5667777778999999999999999874477777888875543 678999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 187 DKVTAHTKEFIRKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 187 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
|+.+....+. .+...+... ..++.++++||++|+ +++|++++...
T Consensus 121 DL~~~~~v~~-~~~~~~~~~--------------------------------~~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 121 DLLNEEEKKE-LERWISIYR--------------------------------DAGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp GGCCHHHHHH-HHHHHHHHH--------------------------------HTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred cCCCccccHH-HHHHHHHHH--------------------------------HCCCeEEEEECCCCCCHHHHHhhccCc
Confidence 9974321110 111111111 112468999999999 99999887653
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=4.2e-09 Score=93.97 Aligned_cols=115 Identities=24% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH------cCCcccceeeeecccc-----------c--eeEeecc-c------------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR------DGSTHQGTVTSMEPNE-----------D--TFVLHSE-S------------ 110 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~------~~~~~~~~~~~~~~~~-----------~--~~~~~~~-~------------ 110 (267)
+...|+++|.+||||||++++|. +.+. .+.+.++.. . ...+... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kV---llVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKT---CLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE---EEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE---EEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 35589999999999999999998 3321 111111100 0 0000000 0
Q ss_pred --CCCccccEEEEeCCCCCCchh-hHH---hh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcE-EE
Q 024474 111 --TKGKIKPVHLVDVPGHSRLRP-KLD---EF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPV-LI 181 (267)
Q Consensus 111 --~~~~~~~~~l~DtpG~~~~~~-~~~---~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pv-iv 181 (267)
.....+.+.|+||||...... ... .. +..+|.+++|+|+..+.+ .......+.+ ..|+ .+
T Consensus 177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~-~~~~a~~~~~----------~~~i~gv 245 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA-CEAQAKAFKD----------KVDVASV 245 (504)
T ss_dssp HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT-HHHHHHHHHH----------HHCCCCE
T ss_pred HHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc-HHHHHHHHHh----------hcCceEE
Confidence 001346899999999764322 111 11 227899999999987622 2222222211 2464 89
Q ss_pred EEecCCCCCC
Q 024474 182 CCNKTDKVTA 191 (267)
Q Consensus 182 v~nK~Dl~~~ 191 (267)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998743
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=7.7e-10 Score=95.51 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---ccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh-------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGST---HQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------- 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------- 132 (267)
...+++++|.+|+|||||+|+|++... ....+...+.++.... ...... .+.++||||.......
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLES---GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECST---TCEEEECCSCCCCSSGGGGSCTT
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCC---CeEEEeCCCcCcHHHHHHHHhHH
Confidence 346899999999999999999987510 0112222333222222 222222 4899999997643321
Q ss_pred -HHhhh--ccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 024474 133 -LDEFL--PQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEI 205 (267)
Q Consensus 133 -~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~ 205 (267)
...++ ...|.++|++++... -....+. .+ +.+ ...+.|+++++||+|.......+...+.+++.+
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~-~l-~~l-----~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQT-LFFGGLA-RL-DYI-----KGGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEE-EEETTTE-EE-EEE-----ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred HHHHHhcccccCceEEEEcCCce-EEECCEE-EE-EEc-----cCCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 11222 678999999998431 0000000 01 111 135789999999999876655555555555443
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=3.2e-10 Score=97.80 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc----cceeeeeccccceeEeecccCCCccccEEEEeCCCCCCchhh------
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH----QGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRLRPK------ 132 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------ 132 (267)
...+++++|.+|+|||||+|+|++.... ...+...+.++... ....+.. .+.++||||..+....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE---ESSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS---SCEEEECCCBCCTTSGGGGSCH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC---CeEEEeCCCcCcHHHHHHHhhH
Confidence 3468999999999999999999875311 11122222222221 1122222 3889999998653311
Q ss_pred --HHhh--hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 024474 133 --LDEF--LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEID 206 (267)
Q Consensus 133 --~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~ 206 (267)
...+ ....+.++|++|+... -....+. .+ +.+ ...+.|+++|+||+|.......+...+.+++.+.
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~-~~-d~l-----~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQT-LFFSGLA-RF-DYV-----SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEE-EEETTTE-EE-EEE-----ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred HHHHHhccccccCceEEEEcCCCE-EEEcceE-EE-EEe-----cCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 1112 3567889999998431 0011000 01 111 1357899999999999877666666666665443
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=3.1e-09 Score=87.78 Aligned_cols=135 Identities=14% Similarity=0.217 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeee-----eccccceeEeecc-cCCCccccEEEEeCCCCCCchh------h
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTS-----MEPNEDTFVLHSE-STKGKIKPVHLVDVPGHSRLRP------K 132 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~------~ 132 (267)
++++++|++|+|||||+|.|++...+...... ...+......... ...+-...++++|++|...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999875432211100 1010000011111 1112123689999999643110 1
Q ss_pred HH--------h--------------hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 133 LD--------E--------------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 133 ~~--------~--------------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.. . .+..+++.++++|.... .+......+...+.. . .++++|+||+|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~--gL~~lD~~~l~~L~~-----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH--SLRPLDLEFMKHLSK-----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS--SCCHHHHHHHHHHHT-----T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC--cCCHHHHHHHHHHHh-----c-CcEEEEEeccccCC
Confidence 11 1 11236889999996632 133333333333331 3 89999999999876
Q ss_pred CCCHHHHHHHHHHHHHH
Q 024474 191 AHTKEFIRKQMEKEIDK 207 (267)
Q Consensus 191 ~~~~~~~~~~l~~~~~~ 207 (267)
........+.+.+.+..
T Consensus 155 ~~e~~~~k~~i~~~l~~ 171 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEV 171 (270)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444443
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=2.6e-08 Score=86.83 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc-ceeeeecccc-c-eeEeecccCCCccccEEEEeCCCCCCchhhHHhh---
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTHQ-GTVTSMEPNE-D-TFVLHSESTKGKIKPVHLVDVPGHSRLRPKLDEF--- 136 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~--- 136 (267)
....++++|++|+|||||+|.|.+-..+. +.+..-.... . .+... ....-.+.++|++|..........+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q----~~~~~~ltv~D~~g~~~~~~~~~~~L~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK----HPNIPNVVFWDLPGIGSTNFPPDTYLEK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE----CSSCTTEEEEECCCGGGSSCCHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc----ccccCCeeehHhhcccchHHHHHHHHHH
Confidence 55589999999999999999999843221 1111111000 0 11111 1111268999999964322222222
Q ss_pred --hccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC---------CCCCHHHHHHHHHHHH
Q 024474 137 --LPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV---------TAHTKEFIRKQMEKEI 205 (267)
Q Consensus 137 --~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~---------~~~~~~~~~~~l~~~~ 205 (267)
+...+..++ ++...+ +.....+...+.. .+.|+++|.||.|+. +.....++.+.+.+..
T Consensus 144 ~~L~~~~~~~~-lS~G~~----~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATRF----KKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp TTGGGCSEEEE-EESSCC----CHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCccCCeEE-eCCCCc----cHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 233455555 776532 1222223333322 568999999999964 1223444444433322
Q ss_pred HH-HHhhhhccccccccccccCCCCCCCcccccccceeEEEEeee--ccCc-chhHHHHHHhhcC
Q 024474 206 DK-LRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASG--LTGE-ISQVEQFIREQVK 266 (267)
Q Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~g~-i~~l~~~l~~~~~ 266 (267)
.+ +... . .....++.+|+ .++. +++|.+.|.+.++
T Consensus 214 ~~~l~~~--g------------------------~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 214 VNTFREN--G------------------------IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHT--T------------------------CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhc--C------------------------CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 10 0000 0 00124688899 5665 9999999988775
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=7.3e-09 Score=89.66 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=60.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-ccce--eeeeccccceeEeeccc-------CCCc---cccEEEEeCCCCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGST-HQGT--VTSMEPNEDTFVLHSES-------TKGK---IKPVHLVDVPGHS 127 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~-------~~~~---~~~~~l~DtpG~~ 127 (267)
...+.+++++|++|||||||+|.|++... .... .+++.|+.+...+.... .... +..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 35678999999999999999999998653 1111 12344544444332100 0110 1258999999964
Q ss_pred C-------chhhHHhhhccCCEEEEEEeCCC
Q 024474 128 R-------LRPKLDEFLPQAAGIVFVVDALE 151 (267)
Q Consensus 128 ~-------~~~~~~~~~~~~d~ii~v~d~~~ 151 (267)
. +......+++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 33345667889999999999875
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=1.5e-08 Score=84.16 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=37.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.....+++++|.||+|||||+|+|.+.... .+...+.++... .....+ ..+.++||||....
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~--~~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIA--KTGDRPGITTSQ--QWVKVG---KELELLDTPGILWP 178 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC----------------CCEEET---TTEEEEECCCCCCS
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCcee--ecCCCCCeeeee--EEEEeC---CCEEEEECcCcCCC
Confidence 356679999999999999999999986531 222222222211 111111 26899999998643
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=2.9e-08 Score=82.44 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=62.0
Q ss_pred EEeCCCCC-CchhhHHhhhccCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHH
Q 024474 120 LVDVPGHS-RLRPKLDEFLPQAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFI 197 (267)
Q Consensus 120 l~DtpG~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 197 (267)
+-+.||+. .........+..+|+++.|+|+.++..+.. .+..++ .++|+++|+||+|+.+. ...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----------~~kp~ilVlNK~DL~~~---~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----------KNKPRIMLLNKADKADA---AVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----------SSSCEEEEEECGGGSCH---HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----------CCCCEEEEEECcccCCH---HHH
Confidence 45678986 345567778999999999999998733322 233322 56899999999999752 111
Q ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 198 RKQMEKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
+..++.+. ..+++++.+||++|. +++|.+++.+.+
T Consensus 69 ----~~~~~~~~-----------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 69 ----QQWKEHFE-----------------------------NQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp ----HHHHHHHH-----------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ----HHHHHHHH-----------------------------hcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 11111110 112367889999999 999988877653
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.66 E-value=3.3e-08 Score=85.25 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-CHHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAH-TKEFIRKQMEK 203 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~l~~ 203 (267)
..++|+..+..+.+.+|++++|+|++++ . ..|...+.+. ..++|+++|+||+|+.+.. ..+...+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~---~---~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF---N---GSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH---H---HHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC---c---ccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 3467888899999999999999999874 1 2222222221 1478999999999997543 23344443333
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
...... .....++++||++|+ +++|+++|.+.
T Consensus 125 ~~~~~g-----------------------------~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 125 SAKQLG-----------------------------LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHTT-----------------------------CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcC-----------------------------CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 222110 011258899999999 99999999764
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.63 E-value=5e-08 Score=84.13 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCC-HHHHHHHHHH
Q 024474 125 GHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHT-KEFIRKQMEK 203 (267)
Q Consensus 125 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~l~~ 203 (267)
.+++|+..+.++++.++++++|+|++++..+ ....+.+.+ .+.|+++|+||+|+.+... .+...+.+.+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s---~~~~l~~~l-------~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS---FIPGLPRFA-------ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG---CCSSHHHHC-------TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc---hhhHHHHHh-------CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 4778899999999999999999999986321 111122221 4689999999999976532 3334443333
Q ss_pred HHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhhc
Q 024474 204 EIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQV 265 (267)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~~ 265 (267)
...... .....++.+||++|. +++|+++|.+..
T Consensus 127 ~~~~~g-----------------------------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELG-----------------------------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTT-----------------------------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcC-----------------------------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 222100 011257899999999 999999997653
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.48 E-value=2e-07 Score=81.82 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc---ceeeeecc-------------------------cccee-Ee--ecccCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGSTHQ---GTVTSMEP-------------------------NEDTF-VL--HSESTK 112 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~~~~---~~~~~~~~-------------------------~~~~~-~~--~~~~~~ 112 (267)
...|+++|++|+||||+++.|...-... ....+.++ ++.+. .. .... .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~-~ 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME-K 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH-T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH-H
Confidence 4579999999999999999986521100 01111100 00000 00 0000 1
Q ss_pred CccccEEEEeCCCCCCchhhHHh------hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCC-c-EEEEEe
Q 024474 113 GKIKPVHLVDVPGHSRLRPKLDE------FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKI-P-VLICCN 184 (267)
Q Consensus 113 ~~~~~~~l~DtpG~~~~~~~~~~------~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-p-vivv~n 184 (267)
...+.+.++||||.......... .+..+|.+++|+|+..+ . + .......+ . ... | ..+|+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~--~-~~~~~~~~-~------~~~~~i~gvVln 246 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q--Q-AGIQAKAF-K------EAVGEIGSIIVT 246 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G--G-HHHHHHHH-H------TTSCSCEEEEEE
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H--H-HHHHHHHH-h------hcccCCeEEEEe
Confidence 13468999999997654222111 12368999999998765 2 1 22222222 1 234 5 889999
Q ss_pred cCCCCC
Q 024474 185 KTDKVT 190 (267)
Q Consensus 185 K~Dl~~ 190 (267)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999853
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.47 E-value=1e-06 Score=77.12 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=39.9
Q ss_pred ccEEEEeCCCCCCchhhHH------hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLD------EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.|+||||......... .....+|.+++|+|+..+ .........+ .. .-.+..+|+||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q~a~~~a~~f---~~------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-QQAYNQALAF---KE------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGHHHHHHHH---HH------SCTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-hhHHHHHHHH---Hh------hCCCeEEEEECCCCc
Confidence 6899999999654322211 123357999999999875 2222222222 21 223457899999975
Q ss_pred C
Q 024474 190 T 190 (267)
Q Consensus 190 ~ 190 (267)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 3
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=9.5e-08 Score=78.45 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=35.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
.+++++|.+|+|||||+|+|.+..... +.....++.. ......+ ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~--~~~~~g~T~~--~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS--VGAQPGITKG--IQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CC--SCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc--cCCCCCCccc--eEEEEeC---CCEEEEECCCcccC
Confidence 699999999999999999999876421 1111111111 1111111 36899999997754
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=4e-07 Score=82.60 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=41.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeee-ccccceeEeecccCCCccccEEEEeCCCCCCc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSM-EPNEDTFVLHSESTKGKIKPVHLVDVPGHSRL 129 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~~ 129 (267)
..+..+|+|+|.||+|||||+|+|++....-....+. +.+.+.+.+...........+.++||||..+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 4566789999999999999999999876311111111 11122222111111123357999999998754
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=2e-06 Score=78.83 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGSTH 90 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~~~ 90 (267)
.-+.++|+|++|||||||++.+.+-..+
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 4457999999999999999999986533
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=3.7e-06 Score=73.62 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=39.5
Q ss_pred cccEEEEeCCCCCC--chh-h---HHh--hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 024474 115 IKPVHLVDVPGHSR--LRP-K---LDE--FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKT 186 (267)
Q Consensus 115 ~~~~~l~DtpG~~~--~~~-~---~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~ 186 (267)
.+.+.++||||... ... . ... .....|.+++|+|+..+ .........+.+. -.+..+|+||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g-q~a~~~a~~f~~~---------~~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG-QKAYDLASRFHQA---------SPIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG-GGGHHHHHHHHHH---------CSSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc-hHHHHHHHHHhcc---------cCCcEEEEecc
Confidence 46899999999644 211 1 111 12246899999999875 3333333333332 13467889999
Q ss_pred CCC
Q 024474 187 DKV 189 (267)
Q Consensus 187 Dl~ 189 (267)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 964
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.12 E-value=9e-06 Score=67.85 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=40.5
Q ss_pred ccccEEEEeCCCCCC--chh-hHH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEe
Q 024474 114 KIKPVHLVDVPGHSR--LRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCN 184 (267)
Q Consensus 114 ~~~~~~l~DtpG~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~n 184 (267)
..+.+.++||||... ... ... .....+|.+++|+|+... . ........+. ...| ..+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~---~~~~~~~~~~-------~~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG-Q---KAYDLASKFN-------QASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G---GHHHHHHHHH-------HTCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch-H---HHHHHHHHHH-------hhCCCCEEEEe
Confidence 346899999999776 322 221 134478999999998754 1 2222222222 1244 678999
Q ss_pred cCCCC
Q 024474 185 KTDKV 189 (267)
Q Consensus 185 K~Dl~ 189 (267)
|.|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99975
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.11 E-value=8.6e-07 Score=72.71 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCCCC-chhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 024474 123 VPGHSR-LRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQM 201 (267)
Q Consensus 123 tpG~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l 201 (267)
.|||.. ........+.++|+++.|+|+.++..+...... + . ++|.++|+||+||.+....+.+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l---------l--~k~~iivlNK~DL~~~~~~~~~~~-- 69 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F---------S--RKETIILLNKVDIADEKTTKKWVE-- 69 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C---------T--TSEEEEEEECGGGSCHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h---------c--CCCcEEEEECccCCCHHHHHHHHH--
Confidence 477653 334567788999999999999886332211111 1 1 689999999999975311111111
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHHhh
Q 024474 202 EKEIDKLRASRSAVSEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIREQ 264 (267)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~~~ 264 (267)
.+.. .+.++ .+||++|. +++|.++|.+.
T Consensus 70 --~~~~--------------------------------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 70 --FFKK--------------------------------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HHHH--------------------------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HHHH--------------------------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1110 11235 78999999 99998887654
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.95 E-value=3.2e-05 Score=67.87 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=39.0
Q ss_pred cccEEEEeCCCCCCchhh-HH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPK-LD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~D 187 (267)
.+.+.|+||||....... .. ..+..++.+++|+|+..+ ...-.....+. . ..+ .-+|+||.|
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-~~~~~~~~~f~---~-------~l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-QDAANTAKAFN---E-------ALPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC-TTHHHHHHHHH---H-------HSCCCCEEEECTT
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh-HHHHHHHHHHh---c-------cCCCeEEEEecCC
Confidence 468999999997654222 21 124468999999999865 22222222121 1 123 247999999
Q ss_pred CCC
Q 024474 188 KVT 190 (267)
Q Consensus 188 l~~ 190 (267)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.95 E-value=6.8e-06 Score=68.73 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=38.2
Q ss_pred HHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 133 LDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 133 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
.+..+.++|.+++|+|+..+..+...+..++...- ..++|+++|+||+||.+.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~------~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE------ANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH------TTTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH------HCCCCEEEEEECCccCch
Confidence 34467899999999999976445554444443222 267899999999999865
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.84 E-value=5e-05 Score=64.16 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++||||||+++.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999865
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.78 E-value=7e-05 Score=66.34 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 455799999999999999999865
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.75 E-value=0.00024 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999864
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.71 E-value=3.5e-05 Score=67.68 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..-|.|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45567999999999999999999863
No 237
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.55 E-value=1.3e-05 Score=71.34 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccceeeeeccccceeEeecccCCCccccEEEEeCCCCCC--chhhH------
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKGKIKPVHLVDVPGHSR--LRPKL------ 133 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~DtpG~~~--~~~~~------ 133 (267)
....+|+++|.+|+||||+.++|...-... ...+.......+.. ...+......+||..|... .+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~---~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRR---DMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHH---HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhh---hhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 345689999999999999999987642100 11111000000000 0011112346789888632 23332
Q ss_pred --HhhhccCCEEEEEEeCCCCCCchHHHHHHHH
Q 024474 134 --DEFLPQAAGIVFVVDALEFLPNCSAASEYLY 164 (267)
Q Consensus 134 --~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~ 164 (267)
..++..+++.++|+|.++. ..+....|+.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~--~~~~R~~~~~ 143 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT--TRERRAMIFN 143 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC--SHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCC--CHHHHHHHHH
Confidence 4566667888999999985 3444444443
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.54 E-value=0.00048 Score=53.64 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=47.4
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
.+.+.++|||+.. .......+..+|.+++++.++.. + ......+..+.... ....+.++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--~-~~~~~~~~~l~~~~-~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--D-FSAAGSVVTVLEAQ-AYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--T-HHHHHHHHHHHTTS-CGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--H-HHHHHHHHHHHHHH-HhCCCCcEEEEEeccCCC
Confidence 3789999999866 34555677789999999998874 4 44544444443321 112456789999999954
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.52 E-value=0.00015 Score=60.98 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999988743
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.52 E-value=0.00047 Score=57.58 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++++|++|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 44689999999999999998764
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.50 E-value=0.00013 Score=60.72 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998764
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.47 E-value=0.00019 Score=61.18 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=51.5
Q ss_pred hhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 024474 136 FLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDKLRASRSAV 215 (267)
Q Consensus 136 ~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 215 (267)
...++|.+++|.. ..+..+...+..++...-. .++|+++|+||+||.+... .+.+++.+..+.
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~------~~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~------ 189 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET------LQVEPLIVLNKIDLLDDEG----MDFVNEQMDIYR------ 189 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH------HTCEEEEEEECGGGCCHHH----HHHHHHHHHHHH------
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh------cCCCEEEEEECccCCCchh----HHHHHHHHHHHH------
Confidence 3578899997755 4453445544444433222 5678899999999975421 111222222221
Q ss_pred ccccccccccCCCCCCCcccccccceeEEEEeeeccCc-chhHHHHHH
Q 024474 216 SEADVTNDFTLGIPGQAFSFSQCHNKVSVAEASGLTGE-ISQVEQFIR 262 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-i~~l~~~l~ 262 (267)
..+++++.+||.+|. +++|..++.
T Consensus 190 -----------------------~~G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 190 -----------------------NIGYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp -----------------------TTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred -----------------------hCCCcEEEEecCCCcCHHHHHHhcC
Confidence 122357888999998 888776553
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.42 E-value=0.0012 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++|+|+.|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999865
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=5e-05 Score=63.47 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++..++++|++|||||||+|.|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 45689999999999999999998754
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=9.3e-05 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 34589999999999999999999865
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.30 E-value=0.00035 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45689999999999999999998 53
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.21 E-value=0.0014 Score=57.25 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=37.2
Q ss_pred cccEEEEeCCCCCCchh-hHH-----hhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRP-KLD-----EFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl 188 (267)
.+.+.++||||...... ... .....+|.+++|+|+... . ........+... .+ ..-+|+||.|.
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q---~av~~a~~f~~~-----l~-i~GVIlTKlD~ 249 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q---EALSVARAFDEK-----VG-VTGLVLTKLDG 249 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T---HHHHHHHHHHHH-----TC-CCEEEEESGGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H---HHHHHHHHHHhc-----CC-ceEEEEeCcCC
Confidence 46799999999764322 111 112358899999998764 2 222222222211 11 24578899986
Q ss_pred C
Q 024474 189 V 189 (267)
Q Consensus 189 ~ 189 (267)
.
T Consensus 250 ~ 250 (425)
T 2ffh_A 250 D 250 (425)
T ss_dssp C
T ss_pred c
Confidence 4
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.20 E-value=0.0024 Score=50.16 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=46.6
Q ss_pred cccEEEEeCCCC-CCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 024474 115 IKPVHLVDVPGH-SRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVT 190 (267)
Q Consensus 115 ~~~~~l~DtpG~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~ 190 (267)
.+.+.++|||+. .. ......+..+|.+|+++.++. .+.......+..+... .+.++.+|+|+.|-..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~--~~~~~~~~~~~~l~~~-----~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA--LALDALMLTIETLQKL-----GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH--HHHHHHHHHHHHHHHT-----CSSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc--hhHHHHHHHHHHHHhc-----cCCCEEEEEEecCCcc
Confidence 468999999987 43 344566778999999998875 3455555555444331 2456889999999653
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.19 E-value=0.00018 Score=56.16 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..++++|++|||||||++.|.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999976
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.18 E-value=0.00022 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00024 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4557999999999999999999864
No 252
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=0.00042 Score=57.82 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++++|++|+|||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 35579999999999999999998754
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.02 E-value=0.00038 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++||||||+++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999875
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.01 E-value=0.00044 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..++++|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999999874
No 255
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.96 E-value=0.0058 Score=49.63 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=45.1
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTD 187 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~D 187 (267)
.+.+.++|||+... ......+..+|.+|+++.++.. +...+...+..+... ..+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~--s~~~~~~~~~~l~~~----~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW--AVESLDLFNFFVRKL----NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT--HHHHHHHHHHHHHTT----TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH--HHHHHHHHHHHHHHH----hccCCEEEEEeccc
Confidence 46799999998553 4455667789999999998763 455554444433332 24567889999994
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.96 E-value=0.0005 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|+|||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 45668999999999999999999864
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.94 E-value=0.00053 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++..++|+|++|||||||++.|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 466789999999999999999998753
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.93 E-value=0.00042 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999988763
No 259
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.92 E-value=0.084 Score=43.39 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=43.8
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~ 189 (267)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+... ....+-+|+|+.|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~--~~~~~~~~~~~l~~~-----g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN--TLKEVETSLSRFEQN-----GIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS--BHHHHHHHHHHHHHT-----TCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC--cHHHHHHHHHHHHhC-----CCCEEEEEEcCcccc
Confidence 579999999866432 233455679999999998863 455555555444332 223356899999864
No 260
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.91 E-value=0.0005 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++..++|+|++|||||||++.|.+-.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356679999999999999999998743
No 261
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.90 E-value=0.029 Score=45.78 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl~ 189 (267)
+.+.|+|||+..... ........+|.+|+|+..... +...+...+..+.. .+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN--NKDEVKKGKELIEA------TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC--CHHHHHHHHHHHHT------TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC--cHHHHHHHHHHHHh------CCCCEEEEEEeCCcCC
Confidence 578999999865432 223344568999999998763 45555555444432 455666 899999964
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.90 E-value=0.00059 Score=53.51 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45668999999999999999999874
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.90 E-value=0.00062 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++.-|+++|++||||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356679999999999999999998753
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.89 E-value=0.00062 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-|+|+||+|||||||+++|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999764
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.87 E-value=0.0076 Score=50.06 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=44.6
Q ss_pred cccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVL-ICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~pvi-vv~nK~Dl 188 (267)
.+.+.++|||+..... .....+..+|.+|+|++++. .+.......+..+.... ...+.+++ +|+|+.+-
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~--~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF--DSIYAMNRIIAAVQAKS--KNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH--HHHHHHHHHHHHHHTTT--TTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH--HHHHHHHHHHHHHHHhh--hcCCCceEEEEEecCCc
Confidence 4689999998855422 23345678999999998765 34555555554444321 12456655 99999983
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.0005 Score=52.93 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-++++|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.84 E-value=0.00073 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++..++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998754
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.77 E-value=0.00088 Score=52.16 Aligned_cols=25 Identities=36% Similarity=0.588 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.00076 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+++|++||||||+.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999999763
No 270
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.76 E-value=0.0012 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999988764
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.76 E-value=0.00095 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
++..|+++|++||||||+++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.75 E-value=0.00077 Score=52.81 Aligned_cols=26 Identities=38% Similarity=0.350 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..++++|++|||||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999999998763
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.74 E-value=0.00079 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.74 E-value=0.00093 Score=53.61 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999998754
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.71 E-value=0.00069 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++--++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 455789999999999999998654
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.69 E-value=0.00097 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.68 E-value=0.001 Score=49.87 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456689999999999999999998753
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.67 E-value=0.001 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 279
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.65 E-value=0.001 Score=52.96 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999998754
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.64 E-value=0.0012 Score=55.10 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.6
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.-+++-.++|+|++|+|||||++.|.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 346777999999999999999999875
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998754
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.0012 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+++|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566899999999999999998864
No 283
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.0049 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...+++.|++|+|||+++..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 335999999999999999988753
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0013 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++||||||+.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.59 E-value=0.0011 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.58 E-value=0.0013 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 024474 65 TTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l 84 (267)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.58 E-value=0.0014 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999998754
No 288
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
-.++++|+.|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998854
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.55 E-value=0.0013 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998754
No 290
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.55 E-value=0.091 Score=43.47 Aligned_cols=65 Identities=11% Similarity=-0.073 Sum_probs=40.8
Q ss_pred ccEEEEeCCCCCCchhhHHhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 024474 116 KPVHLVDVPGHSRLRPKLDEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDKV 189 (267)
Q Consensus 116 ~~~~l~DtpG~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl~ 189 (267)
+.+.|+|||+...... .......+|.+|+|+..... ....+...+..+.. .+.+ +-+|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~--~~~~~~~~~~~l~~------~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN--TAKEVSLSMQRLEQ------AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS--CTTHHHHHHHHHHH------TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC--hHHHHHHHHHHHHh------CCCCeEEEEEeCCccC
Confidence 5789999998654322 22344679999999988763 34444444444433 2333 33788999864
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.55 E-value=0.0018 Score=50.33 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++..|+++|++||||||+.+.|.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999988763
No 292
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.55 E-value=0.0013 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 355679999999999999999998754
No 293
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.55 E-value=0.0012 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.+.+-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998754
No 294
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.54 E-value=0.0015 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456689999999999999999998754
No 295
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.54 E-value=0.0013 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998753
No 296
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.53 E-value=0.0016 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..+|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998764
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.53 E-value=0.0015 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.52 E-value=0.0016 Score=53.10 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456689999999999999999998754
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.52 E-value=0.0014 Score=53.01 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999998854
No 300
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.52 E-value=0.0014 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455689999999999999999998754
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.51 E-value=0.0014 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|||||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999998754
No 302
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0017 Score=52.79 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998854
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0014 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998763
No 304
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.50 E-value=0.0018 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|+.|+|||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999985
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.49 E-value=0.0015 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45568999999999999999998763
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.48 E-value=0.0015 Score=52.78 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355579999999999999999998854
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.48 E-value=0.0016 Score=49.44 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.47 E-value=0.0017 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.+.+-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998754
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0019 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.47 E-value=0.0018 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 311
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.47 E-value=0.0016 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355579999999999999999998854
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.46 E-value=0.002 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999864
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.46 E-value=0.0011 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=17.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH-cC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR-DG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~-~~ 87 (267)
.++..++++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 455689999999999999999998 64
No 314
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.45 E-value=0.0018 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|+.|+|||||++.+.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35557999999999999999999985
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.002 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.002 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999763
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.44 E-value=0.0017 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..++..++|+|++|||||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999998876
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.0017 Score=49.79 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..++..|+++|.+||||||+.+.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.43 E-value=0.0019 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
No 320
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.43 E-value=0.0017 Score=53.48 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999998754
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.42 E-value=0.0017 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.42 E-value=0.0017 Score=49.72 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 323
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.42 E-value=0.0014 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++-.++++|+.|+|||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 324
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.41 E-value=0.002 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455689999999999999999998754
No 325
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.41 E-value=0.0047 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988753
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.39 E-value=0.0024 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.38 E-value=0.0021 Score=50.17 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|+|++|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999874
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.38 E-value=0.0019 Score=52.39 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999998754
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.37 E-value=0.0023 Score=48.88 Aligned_cols=23 Identities=48% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 330
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.37 E-value=0.002 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999866
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.37 E-value=0.0038 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998754
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.35 E-value=0.0026 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...|+++|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999998864
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.33 E-value=0.0022 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.33 E-value=0.0024 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.33 E-value=0.0023 Score=50.20 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0022 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.29 E-value=0.0025 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0025 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 339
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.28 E-value=0.0044 Score=54.23 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------------------CCcccceeeeecc-ccceeEeec----ccCCCccccE
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD------------------GSTHQGTVTSMEP-NEDTFVLHS----ESTKGKIKPV 118 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~------------------~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~ 118 (267)
.+..-|.|+|+.++|||+|+|.|++ ..|..+ ++..+ |.+-+.... ...++....+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCeeEE
Confidence 3455678999999999999996641 122111 11122 223333221 1225556789
Q ss_pred EEEeCCCCCCc
Q 024474 119 HLVDVPGHSRL 129 (267)
Q Consensus 119 ~l~DtpG~~~~ 129 (267)
.++||.|..+.
T Consensus 143 lllDTEG~~d~ 153 (457)
T 4ido_A 143 LLMDTQGTFDS 153 (457)
T ss_dssp EEEEECCBTCT
T ss_pred EEEeccCCCCc
Confidence 99999997654
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.0025 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+..|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.28 E-value=0.0027 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+++|++|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 455799999999999999999874
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.27 E-value=0.0026 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999998754
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.27 E-value=0.0026 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.++-.++++|++|||||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456689999999999999999887
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.27 E-value=0.0028 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....++++|++|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.26 E-value=0.011 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+-.++++|++|+|||||++.|.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34489999999999999999998754
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.26 E-value=0.0032 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....|+++|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999865
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.25 E-value=0.0031 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 348
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.071 Score=38.83 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....|++.|++|+|||++...+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 35567999999999999999998764
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.24 E-value=0.0031 Score=49.19 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.24 E-value=0.0036 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+..+|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999864
No 351
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.23 E-value=0.0017 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++|+|+.|+|||||++.|.+-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456689999999999999999988743
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.22 E-value=0.0023 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+..++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998874
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.20 E-value=0.0029 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.19 E-value=0.0024 Score=50.46 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|++|+|||||++.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999987
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.19 E-value=0.0036 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~ 85 (267)
.++..|+|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 356
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.18 E-value=0.0075 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+...|+|+|++|||||||.+.|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998754
No 357
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0033 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+-.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5589999999999999999998865
No 358
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.17 E-value=0.0069 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+|||+|+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988753
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.16 E-value=0.003 Score=49.11 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..++++|++|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.15 E-value=0.0031 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.14 E-value=0.0015 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..++|+|++|+|||||++.|.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998874
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.13 E-value=0.0038 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++-.++|+|++|||||||++.+.+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3348999999999999999998763
No 363
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.016 Score=48.47 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHhhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 57 QVFRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 57 ~~~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..........+.+.|+||+|||++++.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334567889999999999999999988653
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.12 E-value=0.0035 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|++.|++||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999874
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.12 E-value=0.003 Score=47.86 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+|+++|++||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 366
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.12 E-value=0.0058 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+++..+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988653
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.11 E-value=0.0032 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998876
No 368
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0037 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+|+++|+|||||+|...+|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 369
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.10 E-value=0.0038 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355578999999999999999998854
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.09 E-value=0.0054 Score=52.40 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
..+-.++|+|++|+|||||++.|.+-.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 355689999999999999999998754
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.08 E-value=0.0036 Score=47.60 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999876
No 372
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.08 E-value=0.0041 Score=53.06 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 455679999999999999999998754
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0032 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+..|+++|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.06 E-value=0.0036 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 375
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.06 E-value=0.006 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...+++.||||+|||+++.++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999888765
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.06 E-value=0.0053 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999874
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.06 E-value=0.0038 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 378
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.03 E-value=0.0027 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998764
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.03 E-value=0.0043 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 355679999999999999999998754
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.03 E-value=0.0028 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.02 E-value=0.0044 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 382
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0045 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355679999999999999999998754
No 383
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.00 E-value=0.0049 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+..|+++|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.00 E-value=0.004 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45668999999999999999999865
No 385
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.98 E-value=0.0048 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 355679999999999999999998854
No 386
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.97 E-value=0.0042 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999998754
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.97 E-value=0.004 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++++|++||||||+++.|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999998865
No 388
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.95 E-value=0.005 Score=52.76 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455679999999999999999998754
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.94 E-value=0.004 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++||||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34557999999999999999998763
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.94 E-value=0.0047 Score=46.25 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.93 E-value=0.004 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 392
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.91 E-value=0.0048 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.91 E-value=0.0044 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.91 E-value=0.0035 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45668999999999999999998764
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.89 E-value=0.0064 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..++|+|++||||||+++.+++--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34469999999999999999998743
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0051 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 397
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.85 E-value=0.012 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-+++.|++|+||||++-++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHH
Confidence 3456788899999999998776543
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.85 E-value=0.0056 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-|+++|+|||||+|...+|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34677999999999999988753
No 399
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.85 E-value=0.0051 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45578999999999999999998754
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.84 E-value=0.0056 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.83 E-value=0.0056 Score=48.45 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.83 E-value=0.0056 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||||++.+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999998763
No 403
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.82 E-value=0.0057 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 404
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.82 E-value=0.0047 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999865
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.81 E-value=0.0075 Score=47.17 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++..|+++|++|+||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998865
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.81 E-value=0.0033 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+..|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998753
No 407
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.79 E-value=0.0055 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++++|++|+|||||++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 556799999999999999999874
No 408
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.77 E-value=0.0058 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
++..|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998753
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.77 E-value=0.0042 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 355579999999999999999998754
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.76 E-value=0.0064 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|||||||++.+.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45668999999999999999999874
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0058 Score=53.92 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
-..+..++|+|+.|||||||++.|.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 357789999999999999999998764
No 412
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.026 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999998764
No 413
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.73 E-value=0.016 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.72 E-value=0.0058 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+..|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.72 E-value=0.0025 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.71 E-value=0.0064 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 417
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.68 E-value=0.019 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0065 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++..++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999998865
No 419
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.65 E-value=0.016 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+|+++|++|+||||+...|.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999987754
No 420
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.64 E-value=0.0059 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 024474 66 TIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999864
No 421
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.64 E-value=0.0085 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++|+|++|||||||++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999998763
No 422
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.63 E-value=0.0081 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++-.++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999987
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.61 E-value=0.004 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|||||||++.+.+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355679999999999999999998754
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.60 E-value=0.0078 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-+.+..++++|++|+|||||++.+.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35666899999999999999999886
No 425
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.0084 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...++++|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998763
No 426
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.59 E-value=0.0078 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++--++|+|++|+|||||+..+.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46668999999999999999988653
No 427
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.01 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.8
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+....|++.||||+|||+|..++.+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3455678999999999999999999874
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.58 E-value=0.0072 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999754
No 429
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.52 E-value=0.0084 Score=44.94 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
No 430
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.50 E-value=0.021 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44558999999999999999988753
No 431
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.50 E-value=0.008 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999873
No 432
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.042 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....-+++.||||+|||+|+.++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345567999999999999999999863
No 433
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.49 E-value=0.0096 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 434
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.049 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|+||+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999986654
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.46 E-value=0.0089 Score=50.76 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-+++++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567799999999999999999998854
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.45 E-value=0.0089 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++-.++++|++|+|||||+..+...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45668999999999999999999873
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.45 E-value=0.03 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
..+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 438
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.44 E-value=0.0085 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999998865
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.44 E-value=0.013 Score=48.67 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45567999999999999999998764
No 440
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.013 Score=51.24 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.8
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......-|++.||||+|||+|.+++.+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456678999999999999999999864
No 441
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.36 E-value=0.011 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998753
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.36 E-value=0.0096 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45589999999999999999998754
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.33 E-value=0.012 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.+...|+++|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999998875
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.30 E-value=0.011 Score=43.69 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999875
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.29 E-value=0.011 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+++-.++++|+.|+|||||++.+.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998754
No 446
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.02 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...+++.|++|+||||+++.+.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345999999999999999998764
No 447
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.27 E-value=0.012 Score=48.63 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...-+++.|+||+|||+|...+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998753
No 448
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.27 E-value=0.012 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34568999999999999999998764
No 449
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.014 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....-+++.||||+|||.|..++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 445567999999999999999999864
No 450
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.26 E-value=0.01 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHH
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQL 84 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l 84 (267)
..+..||+++|.+||||||++.++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356789999999999999999886
No 451
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.24 E-value=0.013 Score=47.14 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|++|+|||+++..+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.013 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999998763
No 453
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.18 E-value=0.046 Score=42.93 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCCCHHH-HHHHHHcCCcccceeeeeccccceeEe--ecccCCCccccEEEEeCCCCCCchhhHHhhhc
Q 024474 62 KKSTTIVLAGLSGSGKTV-LFYQLRDGSTHQGTVTSMEPNEDTFVL--HSESTKGKIKPVHLVDVPGHSRLRPKLDEFLP 138 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSs-Ll~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 138 (267)
..+.-.++.|+.|+|||| |+.++.........+.-+.|...+... ....-.+....-..++.+ .+ .......
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~--~d---i~~~i~~ 100 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA--SE---IMTHDLT 100 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG--GG---GGGSCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH--HH---HHHHHhc
Confidence 345678899999999999 555443211111111112221111110 011112222222222221 11 1111113
Q ss_pred cCCEEEEEEeCCCCCCchH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 024474 139 QAAGIVFVVDALEFLPNCS-AASEYLYDILTNSTVVKKKIPVLICCNKTDKVTA 191 (267)
Q Consensus 139 ~~d~ii~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 191 (267)
..| ++.+|=... +. .+.+.+..+.. .++||++.+=..|=...
T Consensus 101 ~~d--vV~IDEaQF---f~~~~v~~l~~la~------~gi~Vi~~GLd~DF~~~ 143 (219)
T 3e2i_A 101 NVD--VIGIDEVQF---FDDEIVSIVEKLSA------DGHRVIVAGLDMDFRGE 143 (219)
T ss_dssp TCS--EEEECCGGG---SCTHHHHHHHHHHH------TTCEEEEEEESBCTTSC
T ss_pred CCC--EEEEechhc---CCHHHHHHHHHHHH------CCCEEEEeecccccccC
Confidence 344 445664443 33 45566666653 68999999999996543
No 454
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.015 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+...+++.|++|+||||+++.+.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334499999999999999998876
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.12 E-value=0.013 Score=51.37 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
-.++-+++|+|++|+|||||++.+.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567799999999999999999998754
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.12 E-value=0.0098 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|+|||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45589999999999999999998754
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.015 Score=53.21 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 356689999999999999999998753
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.08 E-value=0.035 Score=45.09 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 61 RKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 61 ~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345568999999999999999998763
No 459
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.06 E-value=0.011 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|++|+|||||++.+.+-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345689999999999999999998754
No 460
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.077 Score=46.11 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.1
Q ss_pred hhcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 59 FRRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 59 ~~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...+...-|++.||||+|||+|..++.+.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 33455678999999999999999999864
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.01 E-value=0.013 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 462
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.01 E-value=0.014 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
++-.++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 566899999999999999998875
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.013 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345578999999999999999998753
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.00 E-value=0.013 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999988653
No 465
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.99 E-value=0.012 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998865
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.96 E-value=0.016 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.+..|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45579999999999999999998754
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.96 E-value=0.014 Score=49.99 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 024474 66 TIVLAGLSGSGKTVLFYQLR 85 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~ 85 (267)
-.+|+|+.|+|||||++.++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999976
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.95 E-value=0.0094 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
+++-.++++|++|+|||||++.+.+-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345589999999999999999888754
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.93 E-value=0.016 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
.++-.++++|+.|+|||||++.|.+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 355689999999999999999998753
No 470
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.91 E-value=0.28 Score=39.40 Aligned_cols=70 Identities=17% Similarity=-0.020 Sum_probs=40.5
Q ss_pred cccEEEEeCCCCCCchhhH-HhhhccCCEEEEEEeCCCCCCchHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 024474 115 IKPVHLVDVPGHSRLRPKL-DEFLPQAAGIVFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIP-VLICCNKTDK 188 (267)
Q Consensus 115 ~~~~~l~DtpG~~~~~~~~-~~~~~~~d~ii~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p-vivv~nK~Dl 188 (267)
.+.+.++||||........ ......+|.+|+++.++. .+...+...+..+..... ..+.+ +-+|.|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~--~s~~~~~~~~~~l~~~~~--~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM--MALYAANNISKGIQKYAK--SGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH--HHHHHHHHHHHHHHHHBT--TBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch--hhHHHHHHHHHHHHHHHh--cCCCcEEEEEeecCCc
Confidence 4789999999854322221 112246899999998765 245544444443332111 12445 4689999873
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.89 E-value=0.0097 Score=48.27 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988764
No 472
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.89 E-value=0.015 Score=49.41 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998753
No 473
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.87 E-value=0.033 Score=43.00 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCCCCHH-HHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKT-VLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKS-sLl~~l~~ 86 (267)
.+.-.++.|+.|+||| .|++++-+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n 43 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRR 43 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 3456888999999999 66666543
No 474
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.021 Score=50.08 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.9
Q ss_pred hcCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 60 RRKKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 60 ~~~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.-....-|++.||||+|||+|..++.+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3456678999999999999999999864
No 475
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.81 E-value=0.032 Score=49.29 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++++|+||+|||++++.+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999988653
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.80 E-value=0.013 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|++|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999987753
No 477
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.80 E-value=0.041 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988763
No 478
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.79 E-value=0.016 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
....+++.|++|+|||+|++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999998876
No 479
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.77 E-value=0.054 Score=46.01 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||++...+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988753
No 480
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.02 Score=45.55 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++--++++|++|+|||||+.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999877753
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.71 E-value=0.021 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
...-|+++|++||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998763
No 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.71 E-value=0.019 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++|+|+.|+|||||++.|.+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998854
No 483
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.71 E-value=0.019 Score=44.41 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 024474 66 TIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 66 ~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 484
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.69 E-value=0.019 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.....+++.|++|+|||++++.+..
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998865
No 485
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.68 E-value=0.022 Score=47.99 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+...|+|+|++|+|||+|...|...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999864
No 486
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.68 E-value=0.049 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|+||+|||+|...+...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHH
Confidence 48999999999999999998763
No 487
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.66 E-value=0.084 Score=45.04 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-+.|.|++|+|||+|...+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3556789999999999999988754
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.65 E-value=0.022 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4467999999999999999998863
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.021 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
+..|++.|.+||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 490
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.61 E-value=0.019 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.|.+-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998754
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.026 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 024474 65 TTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 65 ~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
..+++.|++|+|||++++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999988764
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.57 E-value=0.064 Score=44.93 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.....+++.|++|+|||++++.+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34557999999999999999998653
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.55 E-value=0.021 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDGS 88 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~~ 88 (267)
++-.++++|+.|+|||||++.|.+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998854
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.54 E-value=0.024 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|+||+|||+|+..+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999998763
No 495
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.53 E-value=0.014 Score=42.62 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....|++.|++|+|||++...+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4457999999999999999987664
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.52 E-value=0.057 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 024474 64 STTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 64 ~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
...+++.|+||+|||+++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.50 E-value=0.014 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 498
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.46 E-value=0.019 Score=48.73 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
.++..+.|+|++|+|||||++.++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46668999999999999999998764
No 499
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.45 E-value=0.013 Score=47.53 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 024474 63 KSTTIVLAGLSGSGKTVLFYQLRDG 87 (267)
Q Consensus 63 ~~~~i~i~G~~~~GKSsLl~~l~~~ 87 (267)
....+++.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3445899999999999999998763
No 500
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.44 E-value=0.021 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=18.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 024474 62 KKSTTIVLAGLSGSGKTVLFYQLRD 86 (267)
Q Consensus 62 ~~~~~i~i~G~~~~GKSsLl~~l~~ 86 (267)
.++.-|++.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
Done!