Query 024475
Match_columns 267
No_of_seqs 169 out of 755
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 2.8E-67 9.7E-72 506.8 26.1 241 15-267 6-259 (505)
2 1m5a_B Insulin B chain; alpha 15.4 71 0.0024 18.3 1.4 18 127-144 11-28 (30)
3 2jni_A Arenicin-2; peptide, an 13.4 1.1E+02 0.0039 16.3 1.8 9 258-266 4-12 (26)
4 3zy0_A Tumor protein P63; tran 7.1 1.7E+02 0.0059 16.9 1.1 7 260-266 6-12 (32)
5 1cn3_F Fragment of coat protei 6.8 20 0.00069 19.7 -2.8 11 191-201 17-27 (29)
6 2jxf_A NS4B(40-69), genome pol 6.1 86 0.003 17.7 -0.5 8 176-183 10-17 (30)
7 1stm_A SPMV, satellite panicum 6.0 1.2E+02 0.0041 23.2 0.0 12 220-231 6-17 (157)
8 1ts9_A Ribonuclease P protein 5.5 8E+02 0.027 17.7 4.4 35 66-101 30-65 (102)
9 3k6d_A T-cadherin; cell adhesi 5.1 6.1E+02 0.021 17.5 3.5 30 23-52 34-65 (99)
10 1zxk_A Cadherin-8; strand dime 4.7 6.6E+02 0.022 17.4 3.4 27 24-52 37-63 (98)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-67 Score=506.78 Aligned_cols=241 Identities=30% Similarity=0.492 Sum_probs=212.9
Q ss_pred EEEEEECCEEEEEeCCC--CCcceEEEECCCCceeeecCCCccccCCCceeeEEEEEEEEEEEcCceEEEEEeceEEEEe
Q 024475 15 MRLWEFPDQFVVEPTDG--SSGSALAISRADGSMNLIHEVPECSILRVPKIRTIFGVVGVLKLLAGSYLIVITERECVGS 92 (267)
Q Consensus 15 ~~l~~t~~~~~i~~~~~--~~~~~L~IdR~~g~i~~~~~~~~~~~~~~~~~~~~~GilG~i~l~~~~yLvvIt~~~~vg~ 92 (267)
+...++||+|+|+|.++ ..+.+|.|||.+|++++.+..+. + ....+..++||||+|++.++.||+|||+++.||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~r~~~~~~~~~~~~~--~-~~~~~~~i~GilG~i~l~~~~YlivIT~~~~vg~ 82 (505)
T 3lwt_X 6 IVYVQNADGIFFKLAEGKGTNDAVIHLANQDQGVRVLGAEEF--P-VQGEVVKIASLMGFIKLKLNRYAIIANTVEETGR 82 (505)
T ss_dssp EEEEEETTEEEEEESSCCSSCCCEEEEETTTCCEEEECGGGS--C-SSSCCEEESEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred eeEEECCCEEEEEECCCCCCCcceEEEEcCCCeEEecccccC--C-CcCceeEEEEEEEEEEECCCcEEEEEEccEEEEE
Confidence 34456999999999763 24678999999999998763221 1 1234788999999999999999999999999999
Q ss_pred eCCceEEEEEeEEEEeCCCCCCCCchhhhhhhHHHHHHhhcccCCCcEEEeccCCccchhhhccccCCCCCCCccccCCC
Q 024475 93 YLGHPIYKVASLKILPCDHSLNNSSAEQKKVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAE 172 (267)
Q Consensus 93 i~g~~Iy~I~~~~~ipl~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYfS~~~DLT~s~Q~~~~~~~~~~~~~~~~~~d 172 (267)
++||.||+|+++++||+..+. .+.++|.+|+++|+.++++++|||||+||||+++|++..... .|.|+.+|
T Consensus 83 i~gh~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~~~~~----~~~~~~~d 153 (505)
T 3lwt_X 83 FNGHVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGP----AASWKTAD 153 (505)
T ss_dssp ETTEEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHHHHCS----CCCGGGSC
T ss_pred ECCeEEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhccccCc----cccccCCC
Confidence 999999999999999998542 235688899999999999999999999999999999875432 37899999
Q ss_pred CceeeehhhhHHHHhCC-----CCCceeeeEEeeEEeEEEEEeCceEEEEEEEeeecCCCCcccccccCCCCCceeeeEe
Q 024475 173 PRFLWNNYLMEALIDNK-----LDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGADSDGYVANFVE 247 (267)
Q Consensus 173 ~rF~WN~~l~~~l~~~~-----~~~~~~p~IqGfv~~~~~~~~~~~~~~~LISRRS~~raGtRy~~RGiD~~G~vANfVE 247 (267)
++|+||++|+++|++.. .+.|++|+|||||++..+.++++++.++||||||++||||||++||||++||||||||
T Consensus 154 ~~F~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVE 233 (505)
T 3lwt_X 154 ERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNE 233 (505)
T ss_dssp TTTCTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEE
T ss_pred CceechHHHHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceee
Confidence 99999999999999753 3579999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCC------eEEEEEEecCC
Q 024475 248 TEQVVQMNG------FMASFVQVTFL 267 (267)
Q Consensus 248 TEqIv~~~~------~~~SfvQiRG~ 267 (267)
|||||+.++ .++||||+||-
T Consensus 234 TEqIv~~~~~~~~~~~~~SfvQiRGS 259 (505)
T 3lwt_X 234 TEQILLAENPESEKIHVFSFLQTRGS 259 (505)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEEEC
T ss_pred EEEEEEeCCCCCCCccEEEEEEeccc
Confidence 999999877 89999999993
No 2
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=15.43 E-value=71 Score=18.30 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHhhcccCCCcEEEec
Q 024475 127 FSCLLKLAERTPGLYFSY 144 (267)
Q Consensus 127 ~~~llk~~~~~~~fYfS~ 144 (267)
..+-|.-+....+||||.
T Consensus 11 LVdaL~~vCgdRGF~~~p 28 (30)
T 1m5a_B 11 LVEALYLVCGERGFFYTP 28 (30)
T ss_dssp HHHHHHHHHGGGCEEECC
T ss_pred HHHHHHHHhccCccccCC
Confidence 444555566689999986
No 3
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=13.36 E-value=1.1e+02 Score=16.28 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=7.5
Q ss_pred EEEEEEecC
Q 024475 258 MASFVQVTF 266 (267)
Q Consensus 258 ~~SfvQiRG 266 (267)
++.||.|||
T Consensus 4 vyayvrirg 12 (26)
T 2jni_A 4 VYAYVRIRG 12 (26)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEEEE
Confidence 468999998
No 4
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=7.13 E-value=1.7e+02 Score=16.92 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=5.2
Q ss_pred EEEEecC
Q 024475 260 SFVQVTF 266 (267)
Q Consensus 260 SfvQiRG 266 (267)
-++||||
T Consensus 6 f~l~VrG 12 (32)
T 3zy0_A 6 LYLPVRG 12 (32)
T ss_dssp EEEEESS
T ss_pred EEEEEec
Confidence 3678888
No 5
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=6.78 E-value=20 Score=19.74 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=7.2
Q ss_pred CCceeeeEEee
Q 024475 191 DPFLLPVIQGS 201 (267)
Q Consensus 191 ~~~~~p~IqGf 201 (267)
++|.+|+|-|.
T Consensus 17 pdwmlplilgl 27 (29)
T 1cn3_F 17 PDWMLPLILGL 27 (29)
T ss_dssp EGGGHHHHHHT
T ss_pred chhhHHHHHhc
Confidence 35777777653
No 6
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=6.10 E-value=86 Score=17.72 Aligned_cols=8 Identities=13% Similarity=0.717 Sum_probs=6.1
Q ss_pred eeehhhhH
Q 024475 176 LWNNYLME 183 (267)
Q Consensus 176 ~WN~~l~~ 183 (267)
+|++||..
T Consensus 10 fW~khMwN 17 (30)
T 2jxf_A 10 FWAKHMWN 17 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68888864
No 7
>1stm_A SPMV, satellite panicum mosaic virus; icosahedral virus; 1.90A {Panicum mosaic satellite virus} SCOP: b.121.7.1
Probab=5.98 E-value=1.2e+02 Score=23.23 Aligned_cols=12 Identities=50% Similarity=0.897 Sum_probs=0.4
Q ss_pred EeeecCCCCccc
Q 024475 220 ARRCTRRNGTRM 231 (267)
Q Consensus 220 SRRS~~raGtRy 231 (267)
|||+.+|+|.|-
T Consensus 6 srr~nrr~~sr~ 17 (157)
T 1stm_A 6 SRRSNRRAGSRA 17 (157)
T ss_dssp -----------C
T ss_pred hhhhhhhhcccc
Confidence 455555555443
No 8
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=5.54 E-value=8e+02 Score=17.66 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=24.7
Q ss_pred EEEEEEEEEEcCceEEEEEeceEEEEee-CCceEEEE
Q 024475 66 IFGVVGVLKLLAGSYLIVITERECVGSY-LGHPIYKV 101 (267)
Q Consensus 66 ~~GilG~i~l~~~~yLvvIt~~~~vg~i-~g~~Iy~I 101 (267)
..|+=|++-.+...-+.++|+. .+-.+ -.+.+|++
T Consensus 30 lVGi~GiVV~ETkntf~I~t~~-~~k~VPK~~~vF~f 65 (102)
T 1ts9_A 30 EVGIKGEVVDETQNTLKIMTEK-GLKVVAKRGRTFRV 65 (102)
T ss_dssp GTTCEEEEEEECSSEEEEEESS-SEEEEECTTCEEEE
T ss_pred ccCcEEEEEEeccceEEEEeCC-cEEEEECCCEEEEE
Confidence 4578899999988888888843 33444 45677754
No 9
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=5.12 E-value=6.1e+02 Score=17.47 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEeC--CCCCcceEEEECCCCceeeecCC
Q 024475 23 QFVVEPT--DGSSGSALAISRADGSMNLIHEV 52 (267)
Q Consensus 23 ~~~i~~~--~~~~~~~L~IdR~~g~i~~~~~~ 52 (267)
.|-|.+. ++.......||..+|.|.....+
T Consensus 34 ~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~L 65 (99)
T 3k6d_A 34 KIKLYGKGVDQEPKGIFKINENSGEVSVTKAL 65 (99)
T ss_dssp EEEEESBTTTBSSTTSEEECTTTCEEEECSCC
T ss_pred EEEEecCcCCCCCCCEEEEECCceEEEECcCC
Confidence 5667642 22223468999999999876543
No 10
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=4.74 E-value=6.6e+02 Score=17.36 Aligned_cols=27 Identities=15% Similarity=0.476 Sum_probs=17.4
Q ss_pred EEEEeCCCCCcceEEEECCCCceeeecCC
Q 024475 24 FVVEPTDGSSGSALAISRADGSMNLIHEV 52 (267)
Q Consensus 24 ~~i~~~~~~~~~~L~IdR~~g~i~~~~~~ 52 (267)
|-|.+... +....||+.+|.|.....+
T Consensus 37 Ysi~~~~~--~~~F~Id~~tG~i~~~~~L 63 (98)
T 1zxk_A 37 YILSGDGA--GTIFQINDITGDIHAIKRL 63 (98)
T ss_dssp EEEEETTB--TTTEEECTTTCEEEECSCC
T ss_pred EEEeCCCC--CCEEEEECCccEEEECccC
Confidence 55554322 2358999999998876443
Done!