BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024476
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 209 bits (532), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K
Sbjct: 65 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 124
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
QP + DFLDI+NPKA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE
Sbjct: 125 FQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIE 184
Query: 121 TDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQ 180
D VDF PL YKEPE+P+ S +A+ + E F F+G RLDGK +
Sbjct: 185 CDMNVDFDAPLGYKEPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVE 243
Query: 181 PPPVP 185
P P P
Sbjct: 244 PSPSP 248
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K
Sbjct: 65 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 124
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
QP + DFLDI+NPKA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE
Sbjct: 125 FQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIE 184
Query: 121 TDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQ 180
D VDF PL YKEPE+P+ S +A+ + E F F+G RLDGK +
Sbjct: 185 CDMNVDFDAPLGYKEPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVE 243
Query: 181 PPPVP 185
P P P
Sbjct: 244 PSPSP 248
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 128/185 (69%), Gaps = 1/185 (0%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L TY K
Sbjct: 65 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 124
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
QP + DFLDI+NPKA+LE LRN++CLTTGD I + YN K Y + ++ETKP A+SIIE
Sbjct: 125 FQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIE 184
Query: 121 TDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQ 180
D VDF PL YKEPE+ + S +A+ + E F F+G RLDGK +
Sbjct: 185 CDMNVDFDAPLGYKEPERQVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVE 243
Query: 181 PPPVP 185
P P P
Sbjct: 244 PSPSP 248
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 130/211 (61%), Gaps = 30/211 (14%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLFE+ N + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK
Sbjct: 69 MLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVK 128
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
+QP T +F+DISNPKA+LE +LR ++ LT D IM+ YNN KYY+ ++E KP+NAISIIE
Sbjct: 129 IQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIE 188
Query: 121 TDCEVDFAPPLDYKE---------------PEKPIASASSRATA------------KAEE 153
D VDFAPP+D KE P K + + +A +
Sbjct: 189 ADVSVDFAPPMDSKEATSPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSD 248
Query: 154 ASVETEPKFSPFTGVARRLDGK---PLTYQP 181
+ + EPKF F G RLDGK PL P
Sbjct: 249 SDSDDEPKFKAFAGTGARLDGKVGTPLGTSP 279
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 118/182 (64%), Gaps = 7/182 (3%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N R SH GVLEF+A+EG Y+P+WMMENLLL EGDI+ +++V+LP T+ K
Sbjct: 62 MLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSK 121
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
QPH+ DFLDI+NPKA+LE LRN++CLT GD I + YN K Y + ++ETKP NA+SIIE
Sbjct: 122 FQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIE 181
Query: 121 TDCEVDFAPPLDYKEPEKPIASASSR----ATAKAEEASVET---EPKFSPFTGVARRLD 173
D V+F P+ YK+ + AS S + T E A E F G RLD
Sbjct: 182 CDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLD 241
Query: 174 GK 175
GK
Sbjct: 242 GK 243
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 112/187 (59%), Gaps = 12/187 (6%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N A +RV+HCGVLEF A EG +P WMM+ L L +GD +R+++ TLPK T+ K
Sbjct: 69 MLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAK 128
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIE 120
L+P + +FL+I+NPKA+LE LR Y+CLT D I +Y + +++ KP+N++ IIE
Sbjct: 129 LKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIE 188
Query: 121 TDCEVDFAPPLDYKE------------PEKPIASASSRATAKAEEASVETEPKFSPFTGV 168
D +DF PP Y E P P ASA A KA + + S F G
Sbjct: 189 CDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFIGAGQKAGGSGGTGQNATSVFGGA 248
Query: 169 ARRLDGK 175
RRLDGK
Sbjct: 249 GRRLDGK 255
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 3/140 (2%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+L N RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ + +P G +VK
Sbjct: 67 MLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVK 126
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAIS 117
L+P + DFLDIS+PKA+LE LRN+S LT D I ++YN K + I I+E KP S +I
Sbjct: 127 LEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSIC 186
Query: 118 IIETDCEVDFAPPLDYKEPE 137
+IETD DFAPP+ Y EP+
Sbjct: 187 VIETDLVTDFAPPVGYVEPD 206
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 8/189 (4%)
Query: 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVK 60
MLF+ N AAE+ +H GVLEFIAEEG +Y+PYWMM L L+ GD+VRV N + +G+YVK
Sbjct: 77 MLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVK 136
Query: 61 LQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---IS 117
LQP + +FLDI++ +A+LE LRN+S LT D + YN++ Y I +I+ +P ++ +S
Sbjct: 137 LQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVS 196
Query: 118 IIETDCEVDFAPPLDYKEP-----EKPIASASSRATAKAEEASVETEPKFSPFTGVARRL 172
++ETD VDF PP+ Y+E ++ IA K + + + G +L
Sbjct: 197 VVETDLVVDFDPPIGYEESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKL 256
Query: 173 DGKPLTYQP 181
+GK + P
Sbjct: 257 NGKEVAEVP 265
>sp|Q9UKF5|ADA29_HUMAN Disintegrin and metalloproteinase domain-containing protein 29
OS=Homo sapiens GN=ADAM29 PE=1 SV=3
Length = 820
Score = 35.0 bits (79), Expect = 0.60, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 137 EKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVPSLGSKDKQPAT 196
++ + + S++ K + E P+ P+ P QPP PS P+
Sbjct: 707 QQDVQTPSAKEEEKIQRRPHELPPQSQPWV--------MPSQSQPPVTPSQSHPQVMPSQ 758
Query: 197 SNGTGQPSAGSTSQNAARQSQGKLVFGSNASLHPKETQKPVAEKEIKQELPEKKEEPKFR 256
S PS ++ + S+ L P ++Q PV + + +L + +P
Sbjct: 759 SQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQPPVT 818
Query: 257 P 257
P
Sbjct: 819 P 819
>sp|A6URC0|DHYS_METVS Probable deoxyhypusine synthase OS=Methanococcus vannielii (strain
SB / ATCC 35089 / DSM 1224) GN=dys PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 33 WMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPK 75
W + +L+E I R+ NV +P Y++ + + F DI + K
Sbjct: 122 WNLNGAILREKGINRIGNVFVPNDRYIEFETYMTRFFDILSKK 164
>sp|Q9Y2I9|TBC30_HUMAN TBC1 domain family member 30 OS=Homo sapiens GN=TBC1D30 PE=1 SV=2
Length = 924
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 122 DCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGV 168
+ E+ PP PE P A ++AT+KA + S P FSPF V
Sbjct: 832 ETELRVHPPCQRHCPEPPSAPEENKATSKAPQGSNSKTPIFSPFPSV 878
>sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1
Length = 4074
Score = 31.6 bits (70), Expect = 5.5, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 47 RVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYID 106
R+ NVT+ +G Y + P ++ NP ++ T RN S + G+++++ Y D
Sbjct: 1081 RIVNVTVIRGDYSAVLPRAFTYVSSLNP--VIVTLSRNISNIAGGETLVIGVARLMNYTD 1138
Query: 107 I-IETKPSNAISIIET 121
+ +E +A++ + T
Sbjct: 1139 LDVEVHVQDALAPVHT 1154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,626,910
Number of Sequences: 539616
Number of extensions: 4499108
Number of successful extensions: 14480
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 14330
Number of HSP's gapped (non-prelim): 330
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)