Query 024476
Match_columns 267
No_of_seqs 205 out of 350
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc1_A Ubiquitin fusion degrad 100.0 2.4E-62 8.1E-67 434.4 14.7 139 1-139 67-208 (208)
2 2yuj_A Ubiquitin fusion degrad 100.0 4.7E-58 1.6E-62 402.2 12.8 129 1-129 62-190 (190)
3 3qwz_A Transitional endoplasmi 99.4 4.6E-12 1.6E-16 112.2 12.9 124 3-128 60-188 (211)
4 3tiw_A Transitional endoplasmi 99.3 1.2E-11 4.2E-16 107.6 13.7 123 3-127 57-184 (187)
5 1cz4_A VCP-like ATPase; double 99.3 1.4E-11 4.7E-16 106.8 11.8 118 11-129 47-174 (185)
6 1wlf_A PEX1, peroxisome biogen 99.0 1.3E-09 4.4E-14 93.9 8.1 125 3-129 45-177 (179)
7 3cf2_A TER ATPase, transitiona 97.6 0.00028 9.6E-09 72.9 10.7 102 23-125 77-184 (806)
8 2jv2_A Putative uncharacterize 97.3 0.00076 2.6E-08 51.7 7.7 68 55-127 11-79 (83)
9 1ypw_A Transitional endoplasmi 96.8 0.0087 3E-07 61.2 12.0 107 13-119 66-177 (806)
10 3hu3_A Transitional endoplasmi 95.8 0.15 5.3E-06 49.2 13.9 115 10-125 63-182 (489)
11 1yfb_A Transition state regula 91.9 0.44 1.5E-05 34.0 6.2 39 23-65 19-57 (59)
12 1cz4_A VCP-like ATPase; double 91.6 0.2 6.9E-06 42.9 4.9 90 18-121 11-103 (185)
13 3tiw_A Transitional endoplasmi 90.7 0.24 8.4E-06 42.6 4.5 71 24-99 35-105 (187)
14 2glw_A PHS018, 92AA long hypot 90.6 0.87 3E-05 35.0 7.2 68 24-98 13-84 (92)
15 1qcs_A N-ethylmaleimide sensit 89.7 1.2 4.2E-05 38.6 8.2 88 24-111 60-157 (211)
16 3qwz_A Transitional endoplasmi 88.3 0.42 1.4E-05 42.0 4.3 91 18-121 31-122 (211)
17 2l66_A SSO7C4, transcriptional 88.0 0.41 1.4E-05 32.9 3.2 38 23-64 9-46 (53)
18 1cr5_A SEC18P (residues 22 - 2 87.2 3 0.0001 35.5 8.9 88 24-111 54-154 (189)
19 3cf2_A TER ATPase, transitiona 82.2 1.7 5.9E-05 44.9 6.0 86 24-122 35-120 (806)
20 3hu3_A Transitional endoplasmi 79.7 2.5 8.6E-05 40.7 5.9 88 24-124 35-122 (489)
21 1wlf_A PEX1, peroxisome biogen 74.1 2.3 7.7E-05 36.1 3.4 79 15-97 14-93 (179)
22 2glw_A PHS018, 92AA long hypot 72.3 2.7 9.2E-05 32.3 3.1 28 23-50 57-84 (92)
23 3cgm_A SLYD, peptidyl-prolyl C 72.0 40 0.0014 27.7 10.6 94 19-134 27-124 (158)
24 1mvf_D MAZE protein, PEMI-like 67.9 8.6 0.0003 28.0 5.0 37 25-65 12-48 (82)
25 2kfw_A FKBP-type peptidyl-prol 64.8 17 0.00058 31.2 7.0 95 19-135 32-129 (196)
26 2w1t_A Spovt, stage V sporulat 61.0 7.4 0.00025 33.5 3.9 41 22-65 10-50 (178)
27 2k8i_A SLYD, peptidyl-prolyl C 60.1 56 0.0019 27.1 9.2 92 19-132 32-126 (171)
28 1s3s_G P47 protein; AAA ATPase 59.2 2.1 7.1E-05 34.4 0.1 17 159-175 4-20 (127)
29 1ypw_A Transitional endoplasmi 57.0 9.3 0.00032 38.9 4.5 71 24-99 35-105 (806)
30 2oyn_A Hypothetical protein MJ 54.5 11 0.00038 31.5 3.8 29 16-51 105-133 (146)
31 1eik_A RNA polymerase subunit 53.4 17 0.00059 27.3 4.4 31 32-62 43-73 (77)
32 2k52_A Uncharacterized protein 53.3 52 0.0018 23.4 6.9 54 38-97 1-55 (80)
33 1a62_A RHO; transcription term 50.9 12 0.00042 30.2 3.5 42 13-55 49-105 (130)
34 1hmj_A RPB5, protein (subunit 49.2 16 0.00056 27.5 3.7 31 32-62 41-71 (78)
35 2ylm_A Ubiquitin carboxyl-term 47.2 30 0.001 33.8 6.2 85 2-100 134-218 (530)
36 2ki8_A Tungsten formylmethanof 46.1 17 0.00057 29.4 3.6 29 24-52 51-79 (146)
37 3db3_A E3 ubiquitin-protein li 41.3 31 0.0011 29.3 4.6 31 81-111 86-123 (161)
38 3o27_A Putative uncharacterize 40.8 26 0.0009 25.8 3.5 27 24-50 23-49 (68)
39 3fdr_A Tudor and KH domain-con 40.3 43 0.0015 24.6 4.9 34 86-119 26-61 (94)
40 2khj_A 30S ribosomal protein S 38.7 1.2E+02 0.0042 22.7 7.6 57 38-97 27-85 (109)
41 2kr7_A FKBP-type peptidyl-prol 38.5 1.5E+02 0.0052 23.7 8.6 92 19-132 37-131 (151)
42 1b12_A Signal peptidase I; ser 37.8 58 0.002 28.1 6.0 46 82-127 44-93 (248)
43 4ayb_H DNA-directed RNA polyme 37.2 43 0.0015 25.3 4.4 31 32-62 49-79 (84)
44 2fhd_A RAD9 homolog, DNA repai 35.4 10 0.00035 32.0 0.7 31 30-62 54-84 (153)
45 4duh_A DNA gyrase subunit B; s 35.3 34 0.0012 29.7 4.1 48 52-99 160-208 (220)
46 3ttz_A DNA gyrase subunit B; p 35.2 36 0.0012 29.0 4.1 47 53-99 134-181 (198)
47 3m7n_A Putative uncharacterize 35.0 20 0.00067 30.0 2.4 80 12-97 30-121 (179)
48 3idw_A Actin cytoskeleton-regu 33.9 2.3 7.9E-05 31.9 -3.1 17 32-48 41-57 (72)
49 3k3s_A Altronate hydrolase; st 33.6 12 0.00042 29.6 0.9 33 29-61 16-48 (105)
50 2z0t_A Putative uncharacterize 33.5 18 0.00061 28.6 1.8 40 70-111 14-55 (109)
51 2ozi_A Hypothetical protein RP 31.6 29 0.001 25.9 2.7 53 41-97 12-72 (98)
52 1ss6_A P47, NSFL1 cofactor P47 31.4 16 0.00054 28.6 1.1 13 253-265 80-92 (102)
53 4emv_A DNA topoisomerase IV, B 30.8 40 0.0014 29.4 3.8 47 53-99 168-214 (226)
54 2ln7_A LPXTG-SITE transpeptida 30.7 55 0.0019 26.3 4.4 29 82-110 70-98 (147)
55 4dt4_A FKBP-type 16 kDa peptid 29.3 2.4E+02 0.0083 23.3 8.6 92 19-132 55-150 (169)
56 1ix5_A FKBP; ppiase, isomerase 29.1 26 0.0009 28.4 2.2 89 18-132 44-136 (151)
57 1yel_A AT1G16640; CESG, protei 25.5 1.4E+02 0.0048 22.2 5.6 76 25-109 21-100 (104)
58 1fr3_A MOP, molybdate/tungstat 25.4 62 0.0021 21.4 3.3 22 29-50 37-58 (67)
59 1t2w_A Sortase; transpeptidase 25.4 85 0.0029 24.9 4.6 25 86-110 73-97 (145)
60 3ntk_A Maternal protein tudor; 25.3 1.8E+02 0.0063 23.4 6.7 37 86-122 46-84 (169)
61 2loj_A Putative cytoplasmic pr 24.6 81 0.0028 22.9 3.8 22 88-109 34-55 (63)
62 4dni_A Fusion protein of RNA-e 24.2 50 0.0017 29.6 3.3 56 65-122 190-257 (257)
63 2jra_A Protein RPA2121; domain 21.9 95 0.0032 22.8 3.7 22 88-109 38-59 (67)
64 1gut_A Mopii, molybdate bindin 21.9 79 0.0027 21.2 3.3 22 28-49 37-58 (68)
65 3dlm_A Histone-lysine N-methyl 21.3 1.7E+02 0.0057 25.8 5.9 57 66-122 129-193 (213)
66 2lu7_A Obscurin-like protein 1 20.8 53 0.0018 23.1 2.3 58 50-114 5-62 (84)
No 1
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-62 Score=434.38 Aligned_cols=139 Identities=53% Similarity=0.937 Sum_probs=137.1
Q ss_pred CeEEEEeCCCCcEEEEEeeeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhh
Q 024476 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILET 80 (267)
Q Consensus 1 MlF~l~N~~~~r~th~GVLEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~ 80 (267)
|+|+|+|..++++||||||||+|+||+||||+|||++|+|++||+|+|++++||+|+|||||||+.+|++|+|||||||+
T Consensus 67 m~F~l~n~~~~~~th~GVlEF~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~ 146 (208)
T 1zc1_A 67 MLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLEN 146 (208)
T ss_dssp CCEEEECTTTCCEEEEEEEEECCSSCEEEECHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHH
T ss_pred EEEEEEeCCCCCEEEEEEEEEEcCCCeEEcCHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCEEEEEECCEEEEEEEEEecCCC---eeEEEeCceeeeecCCCCCCCCCCc
Q 024476 81 TLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSN---AISIIETDCEVDFAPPLDYKEPEKP 139 (267)
Q Consensus 81 ~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~~---aVsIIeTDleVDf~pPldy~Epe~~ 139 (267)
+||||+|||+||+|.|+||++.|+|+|+|++|++ |||||||||+|||+||+||+||+++
T Consensus 147 ~LRnfstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf~~p~~y~ep~~~ 208 (208)
T 1zc1_A 147 VLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYK 208 (208)
T ss_dssp HHHHCSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEECCCCCCCCCCCC
T ss_pred HhhcCccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEecCCCCCcCCCCC
Confidence 9999999999999999999999999999999998 9999999999999999999999874
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-58 Score=402.20 Aligned_cols=129 Identities=57% Similarity=1.050 Sum_probs=127.9
Q ss_pred CeEEEEeCCCCcEEEEEeeeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhh
Q 024476 1 MLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILET 80 (267)
Q Consensus 1 MlF~l~N~~~~r~th~GVLEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~ 80 (267)
|+|+|+|..++|+||||||||+|+||+||||+|||++|+|++||.|+|++++||+|+|||||||+++|++|+|||||||+
T Consensus 62 m~F~l~n~~~~r~th~GVlEFsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~ 141 (190)
T 2yuj_A 62 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 141 (190)
T ss_dssp CEEEEEETTTTEEEEEEEEECCCBTTBEECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHH
T ss_pred eEEEEecCCCCceEEEEEEEEecCCCeEEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeeecC
Q 024476 81 TLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAP 129 (267)
Q Consensus 81 ~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf~p 129 (267)
+||||+|||+||+|.|+||++.|+|+|+|++|++|||||||||+|||+|
T Consensus 142 ~LrnfstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 142 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDA 190 (190)
T ss_dssp HHTTCCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCCCEEEECC
T ss_pred HHhcCcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999986
No 3
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.37 E-value=4.6e-12 Score=112.20 Aligned_cols=124 Identities=20% Similarity=0.309 Sum_probs=105.1
Q ss_pred EEEEeCCCCcEEEEEeeee-eeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccC--chHHH
Q 024476 3 FELRNNAAERVSHCGVLEF-IAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISN--PKAIL 78 (267)
Q Consensus 3 F~l~N~~~~r~th~GVLEF-~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~isn--pKavL 78 (267)
.+|+. ...+.|+|-|+.. ..+.|.|.|..||++||++..||.|.|+.+ .++.|+.|.|.|.+..+-.|+. ...+|
T Consensus 60 V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~l 138 (211)
T 3qwz_A 60 VLLKG-XKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYL 138 (211)
T ss_dssp EEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTT
T ss_pred EEEeC-CCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHH
Confidence 45663 3345899999865 457899999999999999999999999999 8999999999998655544543 36778
Q ss_pred hhccc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeeec
Q 024476 79 ETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFA 128 (267)
Q Consensus 79 E~~LR-nystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf~ 128 (267)
...|. +|-.|++||+|.|.+.++.++|.|++++|. .+|+|..|-+|++.
T Consensus 139 k~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-g~viV~~~T~I~~~ 188 (211)
T 3qwz_A 139 KPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-PYCIVAPDTVIHCE 188 (211)
T ss_dssp HHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-SEEEECTTCEEECC
T ss_pred HHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-CCEEECCCcEEEEc
Confidence 88888 499999999999999999999999999997 68999988888884
No 4
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.34 E-value=1.2e-11 Score=107.62 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=99.5
Q ss_pred EEEEeCCCCcEEEEEeeee-eeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccC--chHHH
Q 024476 3 FELRNNAAERVSHCGVLEF-IAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISN--PKAIL 78 (267)
Q Consensus 3 F~l~N~~~~r~th~GVLEF-~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~isn--pKavL 78 (267)
.+|+. ...+.|+|-|+.. ..++|.|.|..|+++||++..||.|.|+.+ .++.|+.|.|.|.+...-.|+. ...+|
T Consensus 57 V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~l 135 (187)
T 3tiw_A 57 VLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYL 135 (187)
T ss_dssp EEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTH
T ss_pred EEEEC-CCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHH
Confidence 35553 3345899999875 447899999999999999999999999999 8999999999998644323442 36778
Q ss_pred hhccc-cceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeee
Q 024476 79 ETTLR-NYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDF 127 (267)
Q Consensus 79 E~~LR-nystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf 127 (267)
...|. +|-.+++||+|.|.+.++.++|.|++++|. .+|+|..|-+|.+
T Consensus 136 k~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 136 KPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-PYCIVAPDTVIHC 184 (187)
T ss_dssp HHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-SEEECCTTCEEEC
T ss_pred HHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-CCEEECCCcEEEe
Confidence 88888 499999999999999999999999999997 6778876666654
No 5
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.31 E-value=1.4e-11 Score=106.75 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=101.5
Q ss_pred CcEEEEEeee-eeeC--CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC---cCcCCccCchHHHhhcccc
Q 024476 11 ERVSHCGVLE-FIAE--EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT---KDFLDISNPKAILETTLRN 84 (267)
Q Consensus 11 ~r~th~GVLE-F~A~--EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s---~~Fl~isnpKavLE~~LRn 84 (267)
.|.|+|-|+. +..+ .|.|.|..|+++|+++..||.|.|+.+.++.|+.|.|.|.+ ..+.-..|....|...|++
T Consensus 47 ~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~ 126 (185)
T 1cz4_A 47 VRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYVQRALIR 126 (185)
T ss_dssp SSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCBCSEEEEEEECSTTCCSCCCSSHHHHHHHHHTT
T ss_pred CCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCCccEEEEecccccccccccccchHHHHHHHHCC
Confidence 5689999986 3333 68999999999999999999999999999999999999985 4443235778889999999
Q ss_pred ceecccCCEEEEEE---CCE-EEEEEEEEecCCCeeEEEeCceeeeecC
Q 024476 85 YSCLTTGDSIMVAY---NNK-KYYIDIIETKPSNAISIIETDCEVDFAP 129 (267)
Q Consensus 85 ystLT~Gd~I~I~y---n~~-~y~l~V~e~kP~~aVsIIeTDleVDf~p 129 (267)
+. |++||+|.+.+ .++ ...|.|++++|..++|+|..|-+|++..
T Consensus 127 rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~~ 174 (185)
T 1cz4_A 127 RP-MLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIRE 174 (185)
T ss_dssp CE-ECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEECS
T ss_pred Cc-ccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEECC
Confidence 75 99999999986 667 8999999999988789999999998853
No 6
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=98.96 E-value=1.3e-09 Score=93.88 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=104.4
Q ss_pred EEEEeCCCCcEEEEEeeeeee----CCCeEeccHHHHHHcCCCCCCeEEEEE-eecCCcceEEEeeCCcCcCCc-cCchH
Q 024476 3 FELRNNAAERVSHCGVLEFIA----EEGMIYMPYWMMENLLLQEGDIVRVKN-VTLPKGTYVKLQPHTKDFLDI-SNPKA 76 (267)
Q Consensus 3 F~l~N~~~~r~th~GVLEF~A----~EG~i~LP~Wmm~~L~l~~gd~V~I~~-~~LPkGt~vkLqP~s~~Fl~i-snpKa 76 (267)
-+|+- ..++.++|...+.. ..+.|-|..-+.+||++..||.|.|+- ...+.++-|.|.|.+.|-++| .+.-.
T Consensus 45 VeI~g--~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~~~~A~~V~laP~~~dD~ei~e~~a~ 122 (179)
T 1wlf_A 45 IEVAS--DHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADDWEILELHAI 122 (179)
T ss_dssp EEEES--SSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSCCEECSEEEEEESSHHHHHHHHHSCS
T ss_pred EEEEe--CCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCCCccceEEEEEcCCcCCeEEehhHHH
Confidence 35553 23567788877754 467999999999999999999999998 799999999999998765554 55567
Q ss_pred HHhhcccc-ceecccCCEEEEEECC-EEEEEEEEEecCCCeeEEEeCceeeeecC
Q 024476 77 ILETTLRN-YSCLTTGDSIMVAYNN-KKYYIDIIETKPSNAISIIETDCEVDFAP 129 (267)
Q Consensus 77 vLE~~LRn-ystLT~Gd~I~I~yn~-~~y~l~V~e~kP~~aVsIIeTDleVDf~p 129 (267)
.||..|.+ +-.+++||+|.|+..+ ....|.|+.+.|...+++|..|-+|.++|
T Consensus 123 ~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 123 SLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP 177 (179)
T ss_dssp SHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred HHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEec
Confidence 78888885 8999999999999766 88899999999977889999999998866
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.57 E-value=0.00028 Score=72.86 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=79.9
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCc--cCchHHHhhccc-cceecccCCEEEEEE
Q 024476 23 AEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDI--SNPKAILETTLR-NYSCLTTGDSIMVAY 98 (267)
Q Consensus 23 A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~i--snpKavLE~~LR-nystLT~Gd~I~I~y 98 (267)
.+.|.|.|..-+.+||++..||.|.|+-+ .++.++.|.|.|.+...-.+ ......|...|. .+-.+++||+|.|.+
T Consensus 77 ~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~ 156 (806)
T 3cf2_A 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRG 156 (806)
T ss_dssp SBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECC
T ss_pred CCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEec
Confidence 36799999999999999999999999988 79999999999975332222 223444555554 367899999999999
Q ss_pred CCEEEEEEEEEecCCCeeEEEe--Cceee
Q 024476 99 NNKKYYIDIIETKPSNAISIIE--TDCEV 125 (267)
Q Consensus 99 n~~~y~l~V~e~kP~~aVsIIe--TDleV 125 (267)
.+....|.|++++|...+ +|. |.+.+
T Consensus 157 ~~~~~~f~V~~~~P~~~~-~v~~~T~i~~ 184 (806)
T 3cf2_A 157 GMRAVEFKVVETDPSPYC-IVAPDTVIHC 184 (806)
T ss_dssp TTSCEEEEEEEESSSSEE-ECCTTSBCCB
T ss_pred CCcEEEEEEEEEeCCCCe-EECCCcEEEE
Confidence 999999999999998654 444 44444
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.32 E-value=0.00076 Score=51.72 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=53.9
Q ss_pred CcceEEEeeCCcCcCCc-cCchHHHhhccccceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceeeee
Q 024476 55 KGTYVKLQPHTKDFLDI-SNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDF 127 (267)
Q Consensus 55 kGt~vkLqP~s~~Fl~i-snpKavLE~~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf 127 (267)
-|+-|.|.|.+ -+.+ .|.-..|-+.|++.. +++||+|.|..-++...|.|++++|. +++|.-|-++++
T Consensus 11 ~A~kVvLAP~~--~i~~~~~~~~~lk~~L~grP-V~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i 79 (83)
T 2jv2_A 11 IMSELKLKPLP--KVELPPDFVDVIRIKLQGKT-VRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITL 79 (83)
T ss_dssp CCCEEEEEESS--SCCCCHHHHHHHHHHHTTSE-ECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEE
T ss_pred EEEEEEEcCCC--ceecCccHHHHHHHHHCCCC-ccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEE
Confidence 47889999984 2334 344566777777755 99999999998889999999999997 888887777766
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.78 E-value=0.0087 Score=61.17 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=80.1
Q ss_pred EEEEEeee-eeeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccC--chHHHhhcccc-cee
Q 024476 13 VSHCGVLE-FIAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISN--PKAILETTLRN-YSC 87 (267)
Q Consensus 13 ~th~GVLE-F~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~isn--pKavLE~~LRn-yst 87 (267)
.|.|-|+- -..+.|.|.|...+.+|+++..||.|.|+-+ .++.|+.|.|.|-+...-.+.. ....|...|.+ +-.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (806)
T 1ypw_A 66 EAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRP 145 (806)
T ss_dssp ECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCB
T ss_pred cEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCcc
Confidence 46676663 2235789999999999999999999999999 7999999999997533221221 11223333332 466
Q ss_pred cccCCEEEEEECCEEEEEEEEEecCCCeeEEE
Q 024476 88 LTTGDSIMVAYNNKKYYIDIIETKPSNAISII 119 (267)
Q Consensus 88 LT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsII 119 (267)
|++||++.+......+.+.|+++.|...+.|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~ 177 (806)
T 1ypw_A 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177 (806)
T ss_dssp CCTTCEEEECCSSSCEEEEEEEETTTTCCBCC
T ss_pred ccCCCEEEecCCCcceEEEEEeccCCCCceec
Confidence 99999999988888999999999998665554
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.77 E-value=0.15 Score=49.21 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=83.5
Q ss_pred CCcEEEEEeee-eeeCCCeEeccHHHHHHcCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccCc-hHHHhhcc-c-c
Q 024476 10 AERVSHCGVLE-FIAEEGMIYMPYWMMENLLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISNP-KAILETTL-R-N 84 (267)
Q Consensus 10 ~~r~th~GVLE-F~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~isnp-KavLE~~L-R-n 84 (267)
..+.|.|.|+- -.-+.|.|-|..-+.+|+++.-||.|.|+-+ .+|.|+-|.|.|-+..--.+..- -..|+.-+ . .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~ 142 (489)
T 3hu3_A 63 KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142 (489)
T ss_dssp TTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTT
T ss_pred ccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhc
Confidence 34578899862 2235789999999999999999999999999 99999999999976543323221 11222222 2 3
Q ss_pred ceecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCceee
Q 024476 85 YSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEV 125 (267)
Q Consensus 85 ystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleV 125 (267)
+-.+..||.+.+....+.+.+.+++.+|... +++..+-.+
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~ 182 (489)
T 3hu3_A 143 YRPIRKGDIFLVHGGMRAVEFKVVETDPSPY-CIVAPDTVI 182 (489)
T ss_dssp CEEEETTCEEEEEETTEEEEEEEEEEESSSE-EEECTTCEE
T ss_pred CcccccCCEEEecCCCceEEEEEEeecCCCc-eEEcCCeEE
Confidence 6677889999999999999999999988644 333333333
No 11
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=91.88 E-value=0.44 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.6
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 024476 23 AEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 65 (267)
Q Consensus 23 A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s 65 (267)
...|.|.+|.=+.+.|+|++||.|.|... +.-+.|+|..
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~----~~~IiL~p~~ 57 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVD----DEKIILKKYK 57 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEE----TTEEEEEECC
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 47899999999999999999999988764 2358888864
No 12
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=91.57 E-value=0.2 Score=42.87 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=63.5
Q ss_pred eeeeeeC---CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEE
Q 024476 18 VLEFIAE---EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSI 94 (267)
Q Consensus 18 VLEF~A~---EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I 94 (267)
|.|-.+. -|.|+|+.=.|+.|+|.+||.|.|+. .+.+.++.-|...+ ++.+-.--|-..+|+-.-+..||.+
T Consensus 11 V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G---~r~t~a~v~~~~~e--d~~~g~Irid~~~R~N~gv~iGD~V 85 (185)
T 1cz4_A 11 VAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEK---VRKTVGRVYRARPE--DENKGIVRIDSVMRNNCGASIGDKV 85 (185)
T ss_dssp EECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEES---SSEEEEEEEECSST--TTTTSEEECCHHHHHHHTCCTTCEE
T ss_pred EecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEc---CCeEEEEEEEcCcC--cCCCCEEEeCHHHHhccCCCCCCEE
Confidence 5554433 37799999999999999999999975 56788888886322 2222222344566766789999999
Q ss_pred EEEECCEEEEEEEEEecCCCeeEEEeC
Q 024476 95 MVAYNNKKYYIDIIETKPSNAISIIET 121 (267)
Q Consensus 95 ~I~yn~~~y~l~V~e~kP~~aVsIIeT 121 (267)
.|.- .+++++..|.+--+
T Consensus 86 ~V~~---------~~~~~A~~V~l~P~ 103 (185)
T 1cz4_A 86 KVRK---------VRTEIAKKVTLAPI 103 (185)
T ss_dssp EEEE---------ECCCBCSEEEEEEE
T ss_pred EEEE---------CCCCCccEEEEecc
Confidence 9873 35677777766533
No 13
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=90.66 E-value=0.24 Score=42.65 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEEC
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYN 99 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn 99 (267)
+.|.|.|+.-.|+.|+|.+||.|.|+..+ -+-|.+...|.. +...-.--|-..+|+-..+..||.+.|.--
T Consensus 35 D~givrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~----~~~~g~Irid~~~R~N~gV~iGD~V~V~~~ 105 (187)
T 3tiw_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD----TCSDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (187)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT----TSCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEECCC-CCeEEEEEEECC----CCCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence 57899999999999999999999999742 124777777763 233333345677788888999999998744
No 14
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=90.61 E-value=0.87 Score=35.04 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=47.4
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcce----EEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEE
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTY----VKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAY 98 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~----vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~y 98 (267)
..|+|-+|..+-+.|++.+||.|.++.+.+..|.- ....= ..-.+|.=||.+ |..--|..||.+.|..
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v--~~kGqitIPkei-----R~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARV--GEQGSVIIPKAL-----RDVIGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEEC--CGGGEEECCHHH-----HHHHTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEE--CcCceEECcHHH-----HHHcCCCCCCEEEEEE
Confidence 57999999999999999999999998766666651 11100 112244556554 4445788999998864
No 15
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=89.70 E-value=1.2 Score=38.61 Aligned_cols=88 Identities=13% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCc-ceEEEeeCCcCcCC--c-----cCchHHHhhccccc--eecccCCE
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKG-TYVKLQPHTKDFLD--I-----SNPKAILETTLRNY--SCLTTGDS 93 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkG-t~vkLqP~s~~Fl~--i-----snpKavLE~~LRny--stLT~Gd~ 93 (267)
+.|+|.|-.-.-+.+++.-|+.|.|+.-..+.. .|+-.-=.+.||+. - -|-..+-..-+++| ..||.|..
T Consensus 60 ~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~ 139 (211)
T 1qcs_A 60 VPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQ 139 (211)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCE
T ss_pred CCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCE
Confidence 789999998888888999999999987654421 23333334455652 1 23344444455566 45999999
Q ss_pred EEEEECCEEEEEEEEEec
Q 024476 94 IMVAYNNKKYYIDIIETK 111 (267)
Q Consensus 94 I~I~yn~~~y~l~V~e~k 111 (267)
|.+.|++..|.|.|.+++
T Consensus 140 l~f~~~g~~l~l~V~~v~ 157 (211)
T 1qcs_A 140 LVFSFNDKLFGLLVKDIE 157 (211)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEeEEE
Confidence 999999999998887754
No 16
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=88.32 E-value=0.42 Score=41.95 Aligned_cols=91 Identities=21% Similarity=0.253 Sum_probs=63.3
Q ss_pred eeeeee-CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEE
Q 024476 18 VLEFIA-EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMV 96 (267)
Q Consensus 18 VLEF~A-~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I 96 (267)
|-|=.. +.|.|.|+.-.|+.|+|.+||.|.|+..+ -+-|.+...|.. +...-+--|-..+|+-..+..||.+.|
T Consensus 31 V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~----~~~~g~Irid~~~R~N~gV~iGD~V~V 105 (211)
T 3qwz_A 31 VDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXK-RREAVCIVLSDD----TCSDEKIRMNRVVRNNLRVRLGDVISI 105 (211)
T ss_dssp EEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECST-TCEEEEEEEECT----TSCTTEEEECHHHHHHTTCCTTCEEEE
T ss_pred EcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCC-CCcEEEEEEeCC----CCCCCEEEeCHHHHhhcCCCCCCEEEE
Confidence 444433 58899999999999999999999999742 224777777753 222223335667777888999999998
Q ss_pred EECCEEEEEEEEEecCCCeeEEEeC
Q 024476 97 AYNNKKYYIDIIETKPSNAISIIET 121 (267)
Q Consensus 97 ~yn~~~y~l~V~e~kP~~aVsIIeT 121 (267)
.--. +++++.-|.+.=+
T Consensus 106 ~~~~--------~v~~A~~V~LaP~ 122 (211)
T 3qwz_A 106 QPCP--------DVKYGKRIHVLPI 122 (211)
T ss_dssp EECT--------TCCBCSEEEEEEB
T ss_pred EECC--------CCCCceEEEEecc
Confidence 6321 4556666666544
No 17
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=87.99 E-value=0.41 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.6
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeC
Q 024476 23 AEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPH 64 (267)
Q Consensus 23 A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~ 64 (267)
...|.|.+|.=+.+.|+|++||.|.+... .+. +.|+|.
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~---~~~-ivl~p~ 46 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD---ESE-GVVKIQ 46 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC---SSS-CCEEEE
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE---CCE-EEEEEC
Confidence 36799999999999999999999988753 232 666664
No 18
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=87.23 E-value=3 Score=35.55 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecC----CcceEEEeeCCcCcCC------c-cCchHHHhhccccc--eeccc
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLP----KGTYVKLQPHTKDFLD------I-SNPKAILETTLRNY--SCLTT 90 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LP----kGt~vkLqP~s~~Fl~------i-snpKavLE~~LRny--stLT~ 90 (267)
+.|+|.|-.-.-+.+++.-|+.|.|+.-..| ...++-.-=.+.+|+. . -|-..+-..-+++| ..||.
T Consensus 54 ~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~ 133 (189)
T 1cr5_A 54 PPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSP 133 (189)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECT
T ss_pred CCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCC
Confidence 7899999888888889999999999977542 1233332223445542 1 24444455555566 45999
Q ss_pred CCEEEEEECCEEEEEEEEEec
Q 024476 91 GDSIMVAYNNKKYYIDIIETK 111 (267)
Q Consensus 91 Gd~I~I~yn~~~y~l~V~e~k 111 (267)
|..|.+.|++..|.|.|.++.
T Consensus 134 gQ~l~f~~~g~~l~l~V~~i~ 154 (189)
T 1cr5_A 134 TQYLIMEFQGHFFDLKIRNVQ 154 (189)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 999999999999998887754
No 19
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.18 E-value=1.7 Score=44.92 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEECCEEE
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKY 103 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn~~~y 103 (267)
+.+.|+|..-.|+.|+|.+||+|.|+..+--.+.-+.+.+. ++.+-..-|-..+|.-..+..||.|.|.--
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~-----~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~---- 105 (806)
T 3cf2_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDD-----TCSDEKIRMNRVVRNNLRVRLGDVISIQPC---- 105 (806)
T ss_dssp CTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECT-----TSBTTBCEECHHHHHTTTCCTTCEEEEEEC----
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCC-----CCCCCEEEeCHHHHHhcCCCCCCEEEEEEC----
Confidence 56789999999999999999999998765322222223332 233333345566777778899999998632
Q ss_pred EEEEEEecCCCeeEEEeCc
Q 024476 104 YIDIIETKPSNAISIIETD 122 (267)
Q Consensus 104 ~l~V~e~kP~~aVsIIeTD 122 (267)
.+++++..|.|..++
T Consensus 106 ----~~~~~a~~v~l~p~~ 120 (806)
T 3cf2_A 106 ----PDVKYGKRIHVLPID 120 (806)
T ss_dssp ----CCCCBCSBEEEEEBT
T ss_pred ----CCCCcCCEEEEeccc
Confidence 245566666665544
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.72 E-value=2.5 Score=40.70 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEECCEEE
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKY 103 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn~~~y 103 (267)
+-|.|+|..-.|..|+|.+||+|.|+..+ .+.+.+...|.. ++..-...+-..+|+-..+..||.|.|.--.
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~~~g~~-~~~~~~~~~~~~----~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~--- 106 (489)
T 3hu3_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD----TCSDEKIRMNRVVRNNLRVRLGDVISIQPCP--- 106 (489)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT----TSCTTEEECCHHHHHHTTCCTTCEEEEEECT---
T ss_pred cCCEEEECHHHHHHcCCCCCCEEEEecCc-cCcEEEEEeeCC----CCCCCEEEecHHHHhhcCCCCCCEEEEEECC---
Confidence 56999999999999999999999999542 234666766642 1222234466778888899999999986331
Q ss_pred EEEEEEecCCCeeEEEeCcee
Q 024476 104 YIDIIETKPSNAISIIETDCE 124 (267)
Q Consensus 104 ~l~V~e~kP~~aVsIIeTDle 124 (267)
+++++..|.|...+..
T Consensus 107 -----~~~~a~~v~~~~~~~a 122 (489)
T 3hu3_A 107 -----DVKYGKRIHVLPIDDT 122 (489)
T ss_dssp -----TCCBCSEEEEEEBGGG
T ss_pred -----CCCccCEEEEcCCCcc
Confidence 3444555555543333
No 21
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=74.11 E-value=2.3 Score=36.08 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred EEEeeeeee-CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCE
Q 024476 15 HCGVLEFIA-EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDS 93 (267)
Q Consensus 15 h~GVLEF~A-~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~ 93 (267)
-+-|. |+. ..|.+-||.-.|+.|++.+||.|.|+..+ .+....-|-..++-+...-.--+-..+|+-.-|..||.
T Consensus 14 ~~~v~-~~~~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~---~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~ 89 (179)
T 1wlf_A 14 VVTVA-FTNARDCFLHLPRRLVAQLHLLQNQAIEVASDH---QPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQ 89 (179)
T ss_dssp EEEEE-EECCSSSCEEECHHHHHHTTCCTTCCEEEESSS---CCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCE
T ss_pred EEEEE-EECCCCcEEECCHHHHHHcCCCCCcEEEEEeCC---eeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCE
Confidence 34444 654 67899999999999999999999999743 23333222211111111111113346676667999999
Q ss_pred EEEE
Q 024476 94 IMVA 97 (267)
Q Consensus 94 I~I~ 97 (267)
+.|.
T Consensus 90 V~V~ 93 (179)
T 1wlf_A 90 VFLR 93 (179)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 22
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=72.29 E-value=2.7 Score=32.26 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=25.5
Q ss_pred eCCCeEeccHHHHHHcCCCCCCeEEEEE
Q 024476 23 AEEGMIYMPYWMMENLLLQEGDIVRVKN 50 (267)
Q Consensus 23 A~EG~i~LP~Wmm~~L~l~~gd~V~I~~ 50 (267)
...|.|.+|.-+.+.|+|++||.|.+..
T Consensus 57 ~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 57 GEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp CGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred CcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 5789999999999999999999988754
No 23
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=72.03 E-value=40 Score=27.67 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=64.1
Q ss_pred eeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce---ecccCCEEE
Q 024476 19 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 95 (267)
Q Consensus 19 LEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys---tLT~Gd~I~ 95 (267)
++|.-..|.+ +|.|--.=++++.|+...|... |. .+|- -.|+..|.+-.+..|. .+..|+.+.
T Consensus 27 ~~f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ip-----------p~-~aYG-~~~~~lv~~v~~~~f~~~~~~~~G~~~~ 92 (158)
T 3cgm_A 27 LSYLHGHRNL-IPGLEEALEGREEGEAFQAHVP-----------AE-KAYG-PHDPEGVQVVPLSAFPEDAEVVPGAQFY 92 (158)
T ss_dssp EEEETTSSSS-CHHHHHHHTTCBTTCEEEEEEC-----------GG-GTTC-CCCGGGEEEEEGGGSCTTSCCCTTCEEE
T ss_pred EEEEECCCCc-ChHHHHHHcCCCCCCEEEEEEC-----------cH-HHcC-CCCcceEEEEEHHHCCCCCCCccCCEEE
Confidence 7888777765 8999999999999998886532 11 1332 2356666655666664 588899998
Q ss_pred EEEC-CEEEEEEEEEecCCCeeEEEeCceeeeecCCCCCC
Q 024476 96 VAYN-NKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYK 134 (267)
Q Consensus 96 I~yn-~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPldy~ 134 (267)
+.-. ++.+...|.++ -++.+.|||.-||-=+
T Consensus 93 ~~~~~G~~~~~~V~~v--------~~~~v~vD~NHPLAGk 124 (158)
T 3cgm_A 93 AQDMEGNPMPLTVVAV--------EGEEVTVDFNHPLAGK 124 (158)
T ss_dssp EEETTTEEEEEEEEEE--------ETTEEEEECSCTTTTC
T ss_pred EECCCCCEEEEEEEEE--------CCCEEEEeCCccccCC
Confidence 8764 35555556664 4567778888877543
No 24
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=67.91 E-value=8.6 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 024476 25 EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 65 (267)
Q Consensus 25 EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s 65 (267)
.+.|-||.=+.+.|+|.+||.|.|... +.-+.|.|..
T Consensus 12 s~~v~iPk~~~~~lgl~~gd~v~i~~~----~~~iii~p~~ 48 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLV----DGKLIIEPVR 48 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEE----TTEEEEEEC-
T ss_pred ccEEEECHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 467999999999999999999998652 3458888874
No 25
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=64.80 E-value=17 Score=31.16 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=60.4
Q ss_pred eeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce---ecccCCEEE
Q 024476 19 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 95 (267)
Q Consensus 19 LEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys---tLT~Gd~I~ 95 (267)
++|.--.|. ++|-|--.=++++.|+.+.|.. |. ..+|- -.|+..|.+-.+..|. .|..|++|.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~vGe~~~v~I---pp---------e~aYG-e~~~~lV~~vp~~~f~~~~~~~~G~~~~ 97 (196)
T 2kfw_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAV---GA---------NDAYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (196)
T ss_dssp CEEESSSSS-SCHHHHHHHSSSCTTCEEEEEC---ST---------TTTSS-CCCTTTCEEECGGGCCCSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEe---Cc---------HHhcC-CCChhhEEEEEHHHCCCccCcccCCEEE
Confidence 445544443 4899998889999999888653 21 11332 2355555555555564 488999999
Q ss_pred EEECCEEEEEEEEEecCCCeeEEEeCceeeeecCCCCCCC
Q 024476 96 VAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKE 135 (267)
Q Consensus 96 I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPldy~E 135 (267)
+.-.+-.+...|+++. +..+.|||.-||-=+.
T Consensus 98 ~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLAGk~ 129 (196)
T 2kfw_A 98 AETDQGPVPVEITAVE--------DDHVVVDGNHMLAGQN 129 (196)
T ss_dssp EEETTEEEEEEBCCCC--------SSSEEECCCCTTSCCC
T ss_pred EECCCCcEEEEEEEEc--------CCEEEEeCCCCCCCCe
Confidence 8766554555555544 4667788888875443
No 26
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=60.99 E-value=7.4 Score=33.45 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=33.3
Q ss_pred eeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCC
Q 024476 22 IAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHT 65 (267)
Q Consensus 22 ~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s 65 (267)
+...|.|.+|.=+-+.|+|++||.|.|.. -+.|. +.|+|.+
T Consensus 10 V~~kGqItIPkeiR~~LgI~~GD~l~~~~--~~dG~-Iil~~~~ 50 (178)
T 2w1t_A 10 IDDLGRVVIPKEIRRTLRIREGDPLEIFV--DRDGD-VILKKYS 50 (178)
T ss_dssp CCTTSEEECCHHHHHHTTCCTTCEEEEEE--CTTSC-EEEEECC
T ss_pred ECCCceEEEcHHHHHHcCcCCCCEEEEEE--eCCCE-EEEEECC
Confidence 45789999999999999999999998764 34454 7788874
No 27
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=60.11 E-value=56 Score=27.13 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=56.5
Q ss_pred eeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce---ecccCCEEE
Q 024476 19 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 95 (267)
Q Consensus 19 LEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys---tLT~Gd~I~ 95 (267)
++|.-..|. ++|.|--.=++++.|+.+.|... |. .+|- -.|+..|.+--+..|. .|..|+++.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~~Ge~~~v~ip-----------pe-~aYG-~~~~~~v~~v~~~~f~~~~~~~~G~~~~ 97 (171)
T 2k8i_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAVG-----------AN-DAYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (171)
T ss_dssp EEEETTSCS-SCSHHHHHHTTCCTTCEEEEEEE-----------TT-TSSC-CCCTTSEEEEEGGGGTTSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEEC-----------cH-HhcC-CCChhhEEEeeHHHCCcccCccCCcEEE
Confidence 455544443 48999999999999998886643 11 1221 2233444333333443 588999999
Q ss_pred EEECCEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 024476 96 VAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 132 (267)
Q Consensus 96 I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPld 132 (267)
+.-.+-.+...|+++. +..+.|||.-||-
T Consensus 98 ~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLA 126 (171)
T 2k8i_A 98 AETDQGPVPVEITAVE--------DDHVVVDGNHMLA 126 (171)
T ss_dssp EEETTEEEEEEEEEEC--------SSEEEEESCCSSC
T ss_pred EECCCCcEEEEEEEEc--------CCEEEEeCCCCCC
Confidence 8766543444555543 4566788887764
No 28
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=59.19 E-value=2.1 Score=34.37 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=10.0
Q ss_pred CCcccceeeeccccCCc
Q 024476 159 EPKFSPFTGVARRLDGK 175 (267)
Q Consensus 159 ~~~~~~F~G~G~rLdGK 175 (267)
.+++.+|+|.|+||.+=
T Consensus 4 ~~~~~~F~G~G~~Lgs~ 20 (127)
T 1s3s_G 4 KGAFKAFTGEGQKLGST 20 (127)
T ss_dssp ------CCSCCCCCCSS
T ss_pred CCCCCCceecCeECCCC
Confidence 34688999999999873
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=57.01 E-value=9.3 Score=38.94 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEEC
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYN 99 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn 99 (267)
+-|.|.|..-.|+.|+|.+||.|.|+..+- +.+-++..|.... ..-...|-...|+-..+..||++.|.--
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 105 (806)
T 1ypw_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKKR-REAVCIVLSDDTC----SDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (806)
T ss_dssp CSSCEEECHHHHHHHTCCTTCEEEEEETTT-EECCEEEEECSSS----CTTEEECCHHHHTTTTCCTTCEEEEEEC
T ss_pred cCCEEEECHHHHHHcCCCCCCEEEEecCcc-CcEEEEEecCCCC----CCCeEEecHHHHhhcCCCCCCEEEEEEC
Confidence 459999999999999999999999997532 2345555554211 1122234566777788999999998643
No 30
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=54.55 E-value=11 Score=31.49 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=23.3
Q ss_pred EEeeeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEe
Q 024476 16 CGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNV 51 (267)
Q Consensus 16 ~GVLEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~ 51 (267)
-.|+|++|+.. +=+.|+|+.||.|.|+-.
T Consensus 105 ~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 105 SEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp EEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 46777777655 888999999999998753
No 31
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=53.44 E-value=17 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 024476 32 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 62 (267)
Q Consensus 32 ~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLq 62 (267)
.-+++.+|+++||.|.|..-+---|.||..+
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEFVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 4578999999999999999898999888654
No 32
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=53.29 E-value=52 Score=23.41 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=37.3
Q ss_pred cCCCCCCeEEEEEe-ecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEE
Q 024476 38 LLLQEGDIVRVKNV-TLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVA 97 (267)
Q Consensus 38 L~l~~gd~V~I~~~-~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~ 97 (267)
|.++.|+.+.-+-. -.+.|-||.|.+.-..|+-+++... ..+..+..||.|.+.
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~------~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS------LRLENLNVGDEIIVQ 55 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS------CCGGGCCTTCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc------ccceeeCCCCEEEEE
Confidence 45788998887654 4689999999876667775554321 011578999998854
No 33
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=50.87 E-value=12 Score=30.15 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=32.2
Q ss_pred EEEEEeeeee-------e--------CCCeEeccHHHHHHcCCCCCCeEEEEEeecCC
Q 024476 13 VSHCGVLEFI-------A--------EEGMIYMPYWMMENLLLQEGDIVRVKNVTLPK 55 (267)
Q Consensus 13 ~th~GVLEF~-------A--------~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPk 55 (267)
....||||.. - .+.-||+|..+++..+|..||.|...-. -|+
T Consensus 49 ~~~~Gvlei~~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr-~~~ 105 (130)
T 1a62_A 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR-PPK 105 (130)
T ss_dssp EEEEEEEEECTTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEE-CCC
T ss_pred EEEEEEEEEcCCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEe-CCC
Confidence 4568888843 2 2457999999999999999999988743 344
No 34
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=49.21 E-value=16 Score=27.51 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 024476 32 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 62 (267)
Q Consensus 32 ~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLq 62 (267)
.-|++.+|+++||.|.|..-+---|.||..+
T Consensus 41 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 71 (78)
T 1hmj_A 41 DPVIQEIGAKEGDVVRVIRKSPTAGVSIAYR 71 (78)
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 4478999999999999998888888888654
No 35
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=47.24 E-value=30 Score=33.75 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=59.8
Q ss_pred eEEEEeCCCCcEEEEEeeeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhc
Q 024476 2 LFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETT 81 (267)
Q Consensus 2 lF~l~N~~~~r~th~GVLEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~ 81 (267)
.|+.-++.+++.++||-.-+....-..-|=..|.+.||+.++..+++ |=.+.|.. .-.|.|++.-|+.+
T Consensus 134 FlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~l---------yEEi~~~~--ie~l~~~~~t~~~~ 202 (530)
T 2ylm_A 134 FLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLIL---------YEEVKPNL--TERIQDYDVSLDKA 202 (530)
T ss_dssp EEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEE---------EEEEETTE--EEECCCSSSBHHHH
T ss_pred EEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEE---------EEecCCCc--eeEcccccccHHHH
Confidence 47888899999999999999877666667778999999999877766 22333321 11244455545554
Q ss_pred cccceecccCCEEEEEECC
Q 024476 82 LRNYSCLTTGDSIMVAYNN 100 (267)
Q Consensus 82 LRnystLT~Gd~I~I~yn~ 100 (267)
| ..|..||+|.+.-.+
T Consensus 203 ~---~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 203 L---DELMDGDIIVFQKDD 218 (530)
T ss_dssp S---TTCCTTEEEEEEECC
T ss_pred H---hcccCCCEEEEEecC
Confidence 4 578899999988543
No 36
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=46.11 E-value=17 Score=29.42 Aligned_cols=29 Identities=31% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEEee
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKNVT 52 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~ 52 (267)
++..|+|-.--++.|||++||.|+|.+..
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~~ 79 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTEF 79 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECSS
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeCC
Confidence 46789999999999999999999998653
No 37
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=41.27 E-value=31 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.8
Q ss_pred ccccceecccCCEEEEEEC-------CEEEEEEEEEec
Q 024476 81 TLRNYSCLTTGDSIMVAYN-------NKKYYIDIIETK 111 (267)
Q Consensus 81 ~LRnystLT~Gd~I~I~yn-------~~~y~l~V~e~k 111 (267)
++-.+.-|.+|+.++|+|| +.-|...|.+.+
T Consensus 86 t~l~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 86 TIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp CBCCGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred EeccHHHCCcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 4446788999999999999 456777777653
No 38
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=40.77 E-value=26 Score=25.85 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.6
Q ss_pred CCCeEeccHHHHHHcCCCCCCeEEEEE
Q 024476 24 EEGMIYMPYWMMENLLLQEGDIVRVKN 50 (267)
Q Consensus 24 ~EG~i~LP~Wmm~~L~l~~gd~V~I~~ 50 (267)
+.-++.+|.=+.+.|+|++||.+.+..
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~v 49 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNM 49 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEE
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEE
Confidence 344688999999999999999877654
No 39
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=40.35 E-value=43 Score=24.60 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=26.5
Q ss_pred eecccCCEEEEEE--CCEEEEEEEEEecCCCeeEEE
Q 024476 86 SCLTTGDSIMVAY--NNKKYYIDIIETKPSNAISII 119 (267)
Q Consensus 86 stLT~Gd~I~I~y--n~~~y~l~V~e~kP~~aVsII 119 (267)
..+.+||.....| ++.-|.-.|+++.+...+.|.
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~ 61 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLY 61 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEE
Confidence 3578999999998 789999999998754444333
No 40
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=38.67 E-value=1.2e+02 Score=22.67 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=38.7
Q ss_pred cCCCCCCeEEEEEee-cCCcceEEEeeCCcCcCCccCchHHHhhcccc-ceecccCCEEEEE
Q 024476 38 LLLQEGDIVRVKNVT-LPKGTYVKLQPHTKDFLDISNPKAILETTLRN-YSCLTTGDSIMVA 97 (267)
Q Consensus 38 L~l~~gd~V~I~~~~-LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRn-ystLT~Gd~I~I~ 97 (267)
-.+..|++|.-+-+. .+.|-||.|.+.-..|+-+++... ...++ ...+..||.|.+.
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~---~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASR---DRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCS---SSSSSGGGSCCTTCEEEEE
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCc---ccccChhhccCCCCEEEEE
Confidence 367899998876553 589999999886677876654321 11222 3458899998743
No 41
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=38.52 E-value=1.5e+02 Score=23.72 Aligned_cols=92 Identities=22% Similarity=0.230 Sum_probs=51.2
Q ss_pred eeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccc--eecccCCEEEE
Q 024476 19 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNY--SCLTTGDSIMV 96 (267)
Q Consensus 19 LEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRny--stLT~Gd~I~I 96 (267)
++|.--.|. ++|.|=-.=++++.|+...|..- | ..+|- -.|+..|.+-....| ..|..|+.+.+
T Consensus 37 ~~f~~G~g~-vipg~e~aL~gm~~Ge~~~v~ip-----------p-~~aYG-~~~~~~v~~v~~~~f~~~~~~~G~~~~~ 102 (151)
T 2kr7_A 37 LEFIIGTNQ-IIAGLEKAVLKAQIGEWEEVVIA-----------P-EEAYG-VYESSYLQEVPRDQFEGIELEKGMSVFG 102 (151)
T ss_dssp EEEETTCCC-SCHHHHHHHTTCCBTCEEEEEEC-----------G-GGTTC-SSCSCEEEEEEGGGGTTSCCCTTCEEEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEe-----------c-HHHcC-CCCcceEEEEcHHHcCCCCCccCCEEEE
Confidence 455544443 48999998899999998886542 1 11221 112333332233333 24677777777
Q ss_pred EE-CCEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 024476 97 AY-NNKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 132 (267)
Q Consensus 97 ~y-n~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPld 132 (267)
.- ++..+...|.++. +..+.|||.-||-
T Consensus 103 ~~~~G~~~~~~V~~v~--------~~~v~vD~NHPLA 131 (151)
T 2kr7_A 103 QTEDNQTIQAIIKDFS--------ATHVMVDYNHPLA 131 (151)
T ss_dssp EETTTEEEEEEEEEEC--------SSEEEEEECCTTS
T ss_pred ECCCCCEEEEEEEEEC--------CCEEEEECCCcCC
Confidence 64 3444555555543 3445567766653
No 42
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=37.84 E-value=58 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=32.0
Q ss_pred cccceecccCCEEEEEECC--EEEEEEEEEecCCCeeEEEeC--ceeeee
Q 024476 82 LRNYSCLTTGDSIMVAYNN--KKYYIDIIETKPSNAISIIET--DCEVDF 127 (267)
Q Consensus 82 LRnystLT~Gd~I~I~yn~--~~y~l~V~e~kP~~aVsIIeT--DleVDf 127 (267)
|..+..+..||+|.+.+.. ..+.++-+---|.+.|+|.+- -+-|+=
T Consensus 44 l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i~~~~~~l~ING 93 (248)
T 1b12_A 44 LIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQP 93 (248)
T ss_dssp EEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEETTTTEEEEET
T ss_pred ccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEEEcCceEEEECC
Confidence 3345668899999999852 345565544479999999887 455543
No 43
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=37.20 E-value=43 Score=25.32 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 024476 32 YWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 62 (267)
Q Consensus 32 ~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLq 62 (267)
.-+.+.+|+++||+|.|.-.+---|.++-.+
T Consensus 49 DPva~~~g~k~GdVvkI~R~S~tag~~~~YR 79 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKSQLYGEVVSYR 79 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhHHhhCCCCCCEEEEEEcCCCCCccEEEE
Confidence 4488999999999999998887778776543
No 44
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=35.43 E-value=10 Score=32.03 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.4
Q ss_pred ccHHHHHHcCCCCCCeEEEEEeecCCcceEEEe
Q 024476 30 MPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQ 62 (267)
Q Consensus 30 LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLq 62 (267)
+.---|+.|.|+.||.|.|. .+||.+++-+-
T Consensus 54 V~~~~vk~LeLRiGD~VKVd--~vpK~~hiVvG 84 (153)
T 2fhd_A 54 VNSNQIKRFFLKKGDVVQST--RLGKIKHTVVK 84 (153)
T ss_dssp EETTSEEESCCCTTCEEEET--TSTTCCEEEEE
T ss_pred cChhhceeeeeecCCEEEEC--CCCCccEEEEE
Confidence 34445677999999999999 99999998653
No 45
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=35.30 E-value=34 Score=29.69 Aligned_cols=48 Identities=31% Similarity=0.408 Sum_probs=40.7
Q ss_pred ecCCcceEEEeeCCcCcCCc-cCchHHHhhccccceecccCCEEEEEEC
Q 024476 52 TLPKGTYVKLQPHTKDFLDI-SNPKAILETTLRNYSCLTTGDSIMVAYN 99 (267)
Q Consensus 52 ~LPkGt~vkLqP~s~~Fl~i-snpKavLE~~LRnystLT~Gd~I~I~yn 99 (267)
.-+.||.|.|.|--.-|... .---..|..+||.++-|..|=.|.+...
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred cCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 35789999999998889865 5566789999999999999988888764
No 46
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=35.24 E-value=36 Score=28.99 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=39.4
Q ss_pred cCCcceEEEeeCCcCcC-CccCchHHHhhccccceecccCCEEEEEEC
Q 024476 53 LPKGTYVKLQPHTKDFL-DISNPKAILETTLRNYSCLTTGDSIMVAYN 99 (267)
Q Consensus 53 LPkGt~vkLqP~s~~Fl-~isnpKavLE~~LRnystLT~Gd~I~I~yn 99 (267)
-+.||.|.|+|--.-|+ ...---..|..+||.++.|..|=.|.+...
T Consensus 134 ~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 134 DKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp SCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 48999999999998995 454456679999999999999988888764
No 47
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=34.95 E-value=20 Score=30.00 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=49.7
Q ss_pred cEEEEEeeeeeeCCCeEec-cHHHHHHcCCCCCCeEEEEEee-cCCcceEEEee----------CCcCcCCccCchHHHh
Q 024476 12 RVSHCGVLEFIAEEGMIYM-PYWMMENLLLQEGDIVRVKNVT-LPKGTYVKLQP----------HTKDFLDISNPKAILE 79 (267)
Q Consensus 12 r~th~GVLEF~A~EG~i~L-P~Wmm~~L~l~~gd~V~I~~~~-LPkGt~vkLqP----------~s~~Fl~isnpKavLE 79 (267)
..+.+|++++. ...+.+ |. --.....+ ||+|.-+-++ -+.|=||.|.+ .-..++.+++...-
T Consensus 30 ~as~~G~v~~~--~~~v~V~~~-~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~-- 103 (179)
T 3m7n_A 30 FAAVAGKLIIK--DRVAKVESI-SPIPEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEG-- 103 (179)
T ss_dssp EESSSEEEEEE--TTEEEEEES-SCCCCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSS--
T ss_pred EEEEEEEEEEe--CCEEEEEEC-CCCcccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcc--
Confidence 35678999883 334433 31 00112346 9999887665 58999999988 33455556654431
Q ss_pred hccccceecccCCEEEEE
Q 024476 80 TTLRNYSCLTTGDSIMVA 97 (267)
Q Consensus 80 ~~LRnystLT~Gd~I~I~ 97 (267)
....-..+|..||+|...
T Consensus 104 ~~~~~~~~~~~GD~V~ak 121 (179)
T 3m7n_A 104 YVKEISEAVGYLDILKAR 121 (179)
T ss_dssp CCSSGGGTCCTTCEEEEE
T ss_pred hhhCHhhcCCCCCEEEEE
Confidence 112236789999999865
No 48
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=33.85 E-value=2.3 Score=31.86 Aligned_cols=17 Identities=59% Similarity=0.761 Sum_probs=14.5
Q ss_pred HHHHHHcCCCCCCeEEE
Q 024476 32 YWMMENLLLQEGDIVRV 48 (267)
Q Consensus 32 ~Wmm~~L~l~~gd~V~I 48 (267)
.=+|+.|||.+||+|+|
T Consensus 41 ~~~Lr~LGi~eGDIIrV 57 (72)
T 3idw_A 41 NSMLRTLGLREGDIVRV 57 (72)
T ss_dssp HHHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCchhhHHHH
Confidence 34899999999999876
No 49
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=33.58 E-value=12 Score=29.63 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.7
Q ss_pred eccHHHHHHcCCCCCCeEEEEEeecCCcceEEE
Q 024476 29 YMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKL 61 (267)
Q Consensus 29 ~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkL 61 (267)
-|=..||+.|.|.+.|-|.|-...|++|+-+.+
T Consensus 16 ~~~~~~m~~I~i~p~DNVaVAl~~L~aG~~v~~ 48 (105)
T 3k3s_A 16 NLYFQGMQYIKIHALDNVAVALADLAEGTEVSV 48 (105)
T ss_dssp -----CCSEECCSTTCSEEEESSCBCTTCEEEE
T ss_pred hhhhhcCCEEEcCCCCCEEEecCccCCCCEEee
Confidence 344579999999999999999889999998864
No 50
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.49 E-value=18 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=28.3
Q ss_pred CccCchHHHhhccc--cceecccCCEEEEEECCEEEEEEEEEec
Q 024476 70 DISNPKAILETTLR--NYSCLTTGDSIMVAYNNKKYYIDIIETK 111 (267)
Q Consensus 70 ~isnpKavLE~~LR--nystLT~Gd~I~I~yn~~~y~l~V~e~k 111 (267)
.|.+=+...|-+|. +|..+.+||+|.+ +++.....|.++.
T Consensus 14 ~I~~G~KtiEiRlnd~k~~~ikvGD~I~f--~~~~l~~~V~~v~ 55 (109)
T 2z0t_A 14 LIKAGKKKIEGRLYDEKRRQIKPGDIIIF--EGGKLKVKVKGIR 55 (109)
T ss_dssp HHHTTSCCEEEEECCTTGGGCCTTCEEEE--GGGTEEEEEEEEE
T ss_pred HHHcCCCEEEEEecchhhhcCCCCCEEEE--CCCEEEEEEEEEE
Confidence 35555555676776 5999999999999 5556666666653
No 51
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=31.56 E-value=29 Score=25.91 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=34.7
Q ss_pred CCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhcccc--------ceecccCCEEEEE
Q 024476 41 QEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRN--------YSCLTTGDSIMVA 97 (267)
Q Consensus 41 ~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRn--------ystLT~Gd~I~I~ 97 (267)
-+++.++|..++|++|...-..-|..+|.=+ .+++-.|+- -..|..||++.+.
T Consensus 12 ~~~~~v~v~~~~l~PG~~~~~H~H~~~~~iv----~v~~G~~~~~~~dG~~~~~~l~aGd~~~~p 72 (98)
T 2ozi_A 12 IDNDEVRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTRSLAQLKTGRSYARK 72 (98)
T ss_dssp EESSSEEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCEECCCBCTTCCEEEC
T ss_pred EeCCcEEEEEEEECCCCccCcEeCCCCEEEE----EEeeEEEEEEeCCCcEEEEEECCCCEEEEC
Confidence 3567899999999999988766666554211 112333332 2368999988874
No 52
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=31.39 E-value=16 Score=28.57 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.6
Q ss_pred CCcCCcccccccc
Q 024476 253 PKFRPFTGKKYSL 265 (267)
Q Consensus 253 ~~f~aF~G~g~SL 265 (267)
.++++|+|.|++|
T Consensus 80 ~~~~~F~G~G~~L 92 (102)
T 1ss6_A 80 GAFKAFTGEGQKL 92 (102)
T ss_dssp SSSTTSCSSSSSG
T ss_pred CcccCCcccCeEC
Confidence 3689999999998
No 53
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=30.82 E-value=40 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred cCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEEC
Q 024476 53 LPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYN 99 (267)
Q Consensus 53 LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn 99 (267)
-+.||.|.|.|--.-|-...--..+|..+||.++-|..|=.|.+...
T Consensus 168 ~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 214 (226)
T 4emv_A 168 SKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDK 214 (226)
T ss_dssp TCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEET
T ss_pred CCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 67999999999888886555557789999999999999988887654
No 54
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=30.67 E-value=55 Score=26.27 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=23.2
Q ss_pred cccceecccCCEEEEEECCEEEEEEEEEe
Q 024476 82 LRNYSCLTTGDSIMVAYNNKKYYIDIIET 110 (267)
Q Consensus 82 LRnystLT~Gd~I~I~yn~~~y~l~V~e~ 110 (267)
+++..-|..||.|.|...+..|...|.++
T Consensus 70 F~~L~~l~~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 70 FTDLGQLKEKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp SSHHHHSSTTCEEEEEETTEEEEEEEEEE
T ss_pred hhhhhcccCCCEEEEEECCcEEEEEEEeE
Confidence 44445578999999999999998888764
No 55
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=29.30 E-value=2.4e+02 Score=23.30 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=53.7
Q ss_pred eeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce---ecccCCEEE
Q 024476 19 LEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIM 95 (267)
Q Consensus 19 LEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys---tLT~Gd~I~ 95 (267)
++|.--.|. ++|-|--.=++++.|+...|..- -..+|- -.|+..|.+--...|. .|..|..|.
T Consensus 55 ~~f~lG~g~-vipG~eeaL~gm~~Ge~~~v~Ip------------p~~AYG-~~~~~lv~~vp~~~f~~~~~~~~G~~~~ 120 (169)
T 4dt4_A 55 ALFRLGDAS-LSEGLEQHLLGLKVGDKTTFSLE------------PDAAFG-VPSPDLIQYFSRREFMDAGEPEIGAIML 120 (169)
T ss_dssp EEEETTSSS-SCHHHHHHHTTCCTTCEEEEEEC------------GGGTTC-CCCGGGEEEEEGGGGTTTCCCCTTCEEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEC------------hHHhcC-CCChHHEEEeCHHHCCCcCCCCCCcEEE
Confidence 556655454 47999999999999998876531 112332 2244444333333342 367788887
Q ss_pred EEEC-CEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 024476 96 VAYN-NKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 132 (267)
Q Consensus 96 I~yn-~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPld 132 (267)
+.-. +..+...|+++. +..+.|||.-||-
T Consensus 121 ~~~~~G~~~~~~V~~v~--------~~~V~vD~NHPLA 150 (169)
T 4dt4_A 121 FTAMDGSEMPGVIREIN--------GDSITVDFNHPLA 150 (169)
T ss_dssp EECTTSCEEEEEEEEEE--------TTEEEEECSCTTT
T ss_pred EECCCCCEEEEEEEEEc--------CCEEEEeCCCccC
Confidence 7643 345555565543 3455677766653
No 56
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=29.13 E-value=26 Score=28.36 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=53.2
Q ss_pred eeeeeeCCCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce----ecccCCE
Q 024476 18 VLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS----CLTTGDS 93 (267)
Q Consensus 18 VLEF~A~EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys----tLT~Gd~ 93 (267)
-++|.--.|. ++|.|--.=++++.|+...|.. |-..+|-+ .|+..|.+-.+..|. .+..|+.
T Consensus 44 P~~f~~G~g~-vi~G~eeaL~gm~~Ge~~~v~i------------pp~~aYG~-~~~~~v~~v~~~~f~~~~~~~~~G~~ 109 (151)
T 1ix5_A 44 PLEFVVGEGQ-LIQGFEEAVLDMEVGDEKTVKI------------PAEKAYGN-RNEMLIQKIPRDAFKEADFEPEEGMV 109 (151)
T ss_dssp CEEEETTTTC-SCHHHHHHHHTCCTTCCCEEEE------------CTTTSSCS-CCSTTBCCEETHHHHTSTTCCCTTEE
T ss_pred CEEEEECCCC-hhHHHHHHHcCCCCCCEEEEEE------------CcHHHCCC-CCccEEEEEEHHHcCccCCcccccCE
Confidence 4667766665 5799998889999999877653 22223322 244444433333443 3777887
Q ss_pred EEEEECCEEEEEEEEEecCCCeeEEEeCceeeeecCCCC
Q 024476 94 IMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLD 132 (267)
Q Consensus 94 I~I~yn~~~y~l~V~e~kP~~aVsIIeTDleVDf~pPld 132 (267)
+.+.- .|...+.|-+..+.|||.-||-
T Consensus 110 ~~~~~------------~~~~V~~v~~~~v~vD~NHPLA 136 (151)
T 1ix5_A 110 ILAEG------------IPATITEVTDNEVTLDFNHELA 136 (151)
T ss_dssp EESSS------------CEEEEEEEETTEEEEECCCSST
T ss_pred EEECC------------eEEEEEEEcCCEEEEeCCCCCC
Confidence 76442 1222344556677788888763
No 57
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=25.47 E-value=1.4e+02 Score=22.16 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=46.5
Q ss_pred CCeEeccHHHHHHcCCCCCCeEEEEEeecCCcceEEEeeCCcCcCCccCchHHHhhccccce---ecccCCEEEEEECC-
Q 024476 25 EGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYS---CLTTGDSIMVAYNN- 100 (267)
Q Consensus 25 EG~i~LP~Wmm~~L~l~~gd~V~I~~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnys---tLT~Gd~I~I~yn~- 100 (267)
.....||...++.++...+..|.++. |.|..=.++=. ..+-+.+|..-++.|. .|..||.+.+.|.+
T Consensus 21 ~~~L~IP~~F~~~~~~~~~~~v~L~~---~~G~~W~v~~~------~~~~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 21 SKSLEIPLGFNEYFPAPFPITVDLLD---YSGRSWTVRMK------KRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp TTCEECCHHHHTTCCCCCCSEEEEEE---TTSCEEEEEEE------EETTEEEECTTHHHHHHHHTCCTTCEEEEEECSS
T ss_pred cceEECCHHHHHhcCccCCCEEEEEC---CCCCEEEEEEE------EECCcEEEccChHHHHHHcCCCCCCEEEEEEcCC
Confidence 45789999999988776666555543 45554333221 1112334445555543 37899999999964
Q ss_pred EEEEEEEEE
Q 024476 101 KKYYIDIIE 109 (267)
Q Consensus 101 ~~y~l~V~e 109 (267)
..|.+.|.+
T Consensus 92 ~~f~V~If~ 100 (104)
T 1yel_A 92 RTFYVIIYG 100 (104)
T ss_dssp SEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 566665554
No 58
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=25.42 E-value=62 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=19.2
Q ss_pred eccHHHHHHcCCCCCCeEEEEE
Q 024476 29 YMPYWMMENLLLQEGDIVRVKN 50 (267)
Q Consensus 29 ~LP~Wmm~~L~l~~gd~V~I~~ 50 (267)
.++.|-++.|+|.+|+.|.+..
T Consensus 37 ~it~~s~~~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 37 AITIDSVADLDLVPGDKVTALV 58 (67)
T ss_dssp EEEHHHHHHHTCCTTCEEEEEE
T ss_pred EeCHHHHHhCCCCCCCEEEEEE
Confidence 3799999999999999998764
No 59
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=25.40 E-value=85 Score=24.88 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=20.7
Q ss_pred eecccCCEEEEEECCEEEEEEEEEe
Q 024476 86 SCLTTGDSIMVAYNNKKYYIDIIET 110 (267)
Q Consensus 86 stLT~Gd~I~I~yn~~~y~l~V~e~ 110 (267)
.-|..||.|.|...++.|...|.++
T Consensus 73 ~~l~~Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 73 KAAKKGSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp GGCCTTCEEEEEETTEEEEEEEEEE
T ss_pred hhCCCCCEEEEEECCEEEEEEEEEE
Confidence 3467999999999999888888765
No 60
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=25.34 E-value=1.8e+02 Score=23.42 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.6
Q ss_pred eecccCCEEEEEE--CCEEEEEEEEEecCCCeeEEEeCc
Q 024476 86 SCLTTGDSIMVAY--NNKKYYIDIIETKPSNAISIIETD 122 (267)
Q Consensus 86 stLT~Gd~I~I~y--n~~~y~l~V~e~kP~~aVsIIeTD 122 (267)
.....||.....| +++-|.-.|+++.+.+.+.|.=.|
T Consensus 46 ~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~~~~V~fvD 84 (169)
T 3ntk_A 46 SDLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCEVHFID 84 (169)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECSTTCEEEEETT
T ss_pred CCCCCCCEEEEEECCCCcEEEEEEEEECCCCEEEEEEEe
Confidence 4678999999998 679999999999886644444333
No 61
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=24.65 E-value=81 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=18.8
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 024476 88 LTTGDSIMVAYNNKKYYIDIIE 109 (267)
Q Consensus 88 LT~Gd~I~I~yn~~~y~l~V~e 109 (267)
|--+..|.|.|++..|.|++..
T Consensus 34 l~g~~~v~I~H~G~~Y~LR~Tr 55 (63)
T 2loj_A 34 LGPDGKVIIDHNGQEYLLRKTQ 55 (63)
T ss_dssp STTTCEEEEEETTEEEEEEEET
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 5566899999999999999864
No 62
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=24.25 E-value=50 Score=29.62 Aligned_cols=56 Identities=21% Similarity=0.436 Sum_probs=41.4
Q ss_pred CcCcCCccCchHHHhhccccceecccCCEEEEE-------E----CCEEEEEEEEEecC-CCeeEEEeCc
Q 024476 65 TKDFLDISNPKAILETTLRNYSCLTTGDSIMVA-------Y----NNKKYYIDIIETKP-SNAISIIETD 122 (267)
Q Consensus 65 s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~-------y----n~~~y~l~V~e~kP-~~aVsIIeTD 122 (267)
.++|+++.=|...|=..+.+| |.+|+.|.|. | +++.|...|+.+.| ...|.+++.|
T Consensus 190 ~Tdw~~Vv~wgk~~~AEi~~~--L~KG~~V~VeGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~~~ 257 (257)
T 4dni_A 190 EKDHHTIRCFGELFSAEVKQK--VKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGD 257 (257)
T ss_dssp EEEEEEEEEESHHHHHHHHHH--CCTTCEEEEEEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECCCC
T ss_pred ceEEEEEEEECCccHHHHHhh--CCCCCEEEEEEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEecCC
Confidence 467888888877621126666 9999999994 4 24789999999986 4677877665
No 63
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=21.91 E-value=95 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.6
Q ss_pred cccCCEEEEEECCEEEEEEEEE
Q 024476 88 LTTGDSIMVAYNNKKYYIDIIE 109 (267)
Q Consensus 88 LT~Gd~I~I~yn~~~y~l~V~e 109 (267)
|--+..|.|.|++..|.|++..
T Consensus 38 l~g~~ev~I~H~G~~Y~LR~Tr 59 (67)
T 2jra_A 38 FTVDREIVIAHGDDRYRLRLTS 59 (67)
T ss_dssp TTSSSEEEEEETTEEEEEEECT
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 5567899999999999999753
No 64
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=21.88 E-value=79 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.5
Q ss_pred EeccHHHHHHcCCCCCCeEEEE
Q 024476 28 IYMPYWMMENLLLQEGDIVRVK 49 (267)
Q Consensus 28 i~LP~Wmm~~L~l~~gd~V~I~ 49 (267)
..++.|-++.|+|.+|+.|.+.
T Consensus 37 a~it~~s~~~l~L~~G~~V~a~ 58 (68)
T 1gut_A 37 SIISLDSVEELGVKEGAELTAV 58 (68)
T ss_dssp EEEEHHHHHHHTCCTTCEEEEE
T ss_pred EEeCHHHHHHCCCCCCCEEEEE
Confidence 5589999999999999999875
No 65
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=21.25 E-value=1.7e+02 Score=25.82 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=42.9
Q ss_pred cCcC-CccC--chHHHhhccccce-----ecccCCEEEEEECCEEEEEEEEEecCCCeeEEEeCc
Q 024476 66 KDFL-DISN--PKAILETTLRNYS-----CLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETD 122 (267)
Q Consensus 66 ~~Fl-~isn--pKavLE~~LRnys-----tLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIeTD 122 (267)
.+++ ||.+ -+.+....|+.|+ -|..|..|.+..|++-+...|+++.=+=+.-.-++|
T Consensus 129 ~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~d 193 (213)
T 3dlm_A 129 KKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDD 193 (213)
T ss_dssp SSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTT
T ss_pred cchhhhcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCC
Confidence 4454 6876 3899999999774 389999999999999999999987654444333444
No 66
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=20.85 E-value=53 Score=23.07 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=38.8
Q ss_pred EeecCCcceEEEeeCCcCcCCccCchHHHhhccccceecccCCEEEEEECCEEEEEEEEEecCCC
Q 024476 50 NVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSN 114 (267)
Q Consensus 50 ~~~LPkGt~vkLqP~s~~Fl~isnpKavLE~~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~~ 114 (267)
.++...|.-++|... +++|..-. .=+||=.-|..++.+.+...+..+.|.|..+.+++
T Consensus 5 ~v~~~~G~~v~l~C~------vs~p~p~v-~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D 62 (84)
T 2lu7_A 5 RVRSTPGGDLELVVH------LSGPGGPV-RWYKDGERLASQGRVQLEQAGARQVLRVQGARSGD 62 (84)
T ss_dssp CEEECTTSCEEEECC------CSCCSTTC-EEEETTEECCCCSSEEEEECSSCEEEEESSCSSTT
T ss_pred EEEEecCCCEEEEEE------ECCCCcEE-EEEECCEEccccccEEEeecCCeEEEEecCCCCcc
Confidence 345556666777664 23333322 23446667888888889888888899999988864
Done!