Query 024478
Match_columns 267
No_of_seqs 207 out of 1310
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 5.5E-58 1.2E-62 393.7 17.9 173 94-266 32-205 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 9.6E-58 2.1E-62 422.4 14.9 167 100-266 7-181 (372)
3 KOG0879 U-snRNP-associated cyc 100.0 1.4E-50 3.1E-55 330.1 13.3 166 98-263 7-177 (177)
4 cd01926 cyclophilin_ABH_like c 100.0 1.5E-47 3.3E-52 325.9 20.1 159 102-261 1-164 (164)
5 KOG0111 Cyclophilin-type pepti 100.0 1.8E-48 3.9E-53 340.3 10.2 166 98-264 133-298 (298)
6 PLN03149 peptidyl-prolyl isome 100.0 8.7E-47 1.9E-51 327.7 19.7 163 101-263 18-186 (186)
7 PTZ00060 cyclophilin; Provisio 100.0 3.3E-46 7.2E-51 323.3 20.6 162 101-264 15-183 (183)
8 PTZ00221 cyclophilin; Provisio 100.0 4.5E-46 9.8E-51 335.1 21.1 164 98-265 49-221 (249)
9 KOG0881 Cyclophilin type pepti 100.0 2.7E-46 5.8E-51 301.9 9.2 154 101-263 9-163 (164)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 1.3E-44 2.9E-49 305.6 16.4 147 111-263 4-157 (158)
11 cd01923 cyclophilin_RING cyclo 100.0 1.8E-43 4E-48 299.7 19.7 148 113-264 6-154 (159)
12 cd01927 cyclophilin_WD40 cyclo 100.0 1.7E-43 3.6E-48 296.6 17.7 144 112-259 3-147 (148)
13 cd01928 Cyclophilin_PPIL3_like 100.0 2.4E-43 5.2E-48 297.3 18.6 145 113-261 7-152 (153)
14 cd01921 cyclophilin_RRM cyclop 100.0 1.1E-42 2.3E-47 296.7 18.6 149 112-264 3-160 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 8.1E-43 1.8E-47 292.0 17.0 143 112-259 3-146 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 3.9E-42 8.5E-47 319.8 12.8 183 74-263 243-431 (518)
17 cd01925 cyclophilin_CeCYP16-li 100.0 7.8E-41 1.7E-45 286.7 19.6 156 100-264 4-161 (171)
18 PRK10903 peptidyl-prolyl cis-t 100.0 7.4E-41 1.6E-45 291.5 19.2 157 97-264 24-190 (190)
19 KOG0882 Cyclophilin-related pe 100.0 2.2E-41 4.7E-46 319.8 11.8 153 106-262 404-557 (558)
20 PRK10791 peptidyl-prolyl cis-t 100.0 8.7E-40 1.9E-44 278.7 17.8 145 113-263 6-163 (164)
21 KOG0865 Cyclophilin type pepti 100.0 5.1E-41 1.1E-45 286.0 9.8 163 100-263 2-167 (167)
22 cd01920 cyclophilin_EcCYP_like 100.0 3.3E-39 7.1E-44 272.6 17.2 142 113-260 4-155 (155)
23 KOG0884 Similar to cyclophilin 100.0 2.5E-39 5.4E-44 260.2 11.2 146 113-262 7-154 (161)
24 PF00160 Pro_isomerase: Cyclop 100.0 1.3E-37 2.8E-42 260.5 17.7 150 105-262 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 1.4E-37 3E-42 258.2 17.6 142 113-259 4-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 1E-35 2.2E-40 256.3 16.4 129 112-243 3-165 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 6.3E-36 1.4E-40 277.2 13.0 159 96-263 7-167 (439)
28 KOG0415 Predicted peptidyl pro 100.0 4.1E-34 8.9E-39 263.8 12.4 150 112-265 6-164 (479)
29 KOG0882 Cyclophilin-related pe 97.5 8E-05 1.7E-09 72.3 4.2 143 116-262 112-261 (558)
30 TIGR03268 methan_mark_3 putati 96.2 0.032 7E-07 55.1 9.9 115 116-243 375-496 (503)
31 TIGR03268 methan_mark_3 putati 95.9 0.035 7.5E-07 54.9 8.5 104 113-243 198-304 (503)
32 COG4070 Predicted peptidyl-pro 95.9 0.022 4.7E-07 54.9 6.8 103 115-243 202-306 (512)
33 PRK00969 hypothetical protein; 95.9 0.03 6.6E-07 55.4 7.9 103 114-243 202-307 (508)
34 PRK00969 hypothetical protein; 95.5 0.091 2E-06 52.1 9.8 113 116-243 378-498 (508)
35 COG4070 Predicted peptidyl-pro 94.1 0.25 5.4E-06 47.9 8.3 115 117-243 377-499 (512)
36 PF12903 DUF3830: Protein of u 92.9 0.33 7.1E-06 41.0 6.3 107 116-242 8-130 (147)
37 PF04126 Cyclophil_like: Cyclo 38.9 29 0.00064 27.9 2.7 48 191-243 60-114 (120)
38 PF06138 Chordopox_E11: Chordo 31.9 2.6E+02 0.0056 23.2 7.1 48 103-157 5-61 (130)
39 COG2164 Uncharacterized conser 26.9 38 0.00081 27.2 1.4 33 211-243 80-118 (126)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-58 Score=393.66 Aligned_cols=173 Identities=70% Similarity=1.180 Sum_probs=169.1
Q ss_pred ccccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhc-cCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 024478 94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG 172 (267)
Q Consensus 94 ~~~~~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~-g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~g 172 (267)
.+.++++|++|||||+++++..|||+|+||++.+|+||+||.+||+ ++++++|.|++||||+|||||||||++.++|+|
T Consensus 32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCC
Confidence 3667899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 024478 173 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK 252 (267)
Q Consensus 173 g~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~ 252 (267)
+.++||+.|+|||+.++|+++|.|||||.|||+||||||||+...+||||+|+|||+|++|||+|.+|+..+||++++|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeEEecCC
Q 024478 253 VPCRIINSGELPLD 266 (267)
Q Consensus 253 ~~V~I~~cGvL~~~ 266 (267)
++++|.+||+|+.+
T Consensus 192 e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 192 EDVVIANCGELPVE 205 (217)
T ss_pred ccEEEeecCccccc
Confidence 99999999999764
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-58 Score=422.40 Aligned_cols=167 Identities=65% Similarity=1.070 Sum_probs=163.0
Q ss_pred ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCc--------ccCCCEEEEEEcCcEEEeCCCCCCCCC
Q 024478 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGT 171 (267)
Q Consensus 100 ~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~f~iQgGd~~~~~g~ 171 (267)
.+|+|||||+|++.+.|||+||||.++||+||+||+.||+|++|. .|+|+.||||+++|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 578999999999999999999999999999999999999999984 499999999999999999999999999
Q ss_pred CCccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCC
Q 024478 172 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYP 251 (267)
Q Consensus 172 gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P 251 (267)
||++|||..|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.|+.+.+|..++|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeEEecCC
Q 024478 252 KVPCRIINSGELPLD 266 (267)
Q Consensus 252 ~~~V~I~~cGvL~~~ 266 (267)
..+|+|.+||+|...
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999999764
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-50 Score=330.15 Aligned_cols=166 Identities=60% Similarity=1.056 Sum_probs=160.1
Q ss_pred ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCC-----CcccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 024478 98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK-----GYGYKGCSFHRIIKDFMIQGGDFTEGDGTG 172 (267)
Q Consensus 98 ~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~-----g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~g 172 (267)
...++.|||||++++.+.|||.||||.+.+|+|++||++.|+|+. ..+|+++.|||||++|||||||+-.++|+|
T Consensus 7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 345899999999999999999999999999999999999999853 347999999999999999999999999999
Q ss_pred CccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 024478 173 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK 252 (267)
Q Consensus 173 g~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~ 252 (267)
-.+||+..|+||++.++|..+|+|+|||+|+++||.|||||...+.|||++|+|||+|++||.++++|+.+|+.++++|+
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeEEe
Q 024478 253 VPCRIINSGEL 263 (267)
Q Consensus 253 ~~V~I~~cGvL 263 (267)
-+|.|+.||++
T Consensus 167 l~v~i~qCGem 177 (177)
T KOG0879|consen 167 LPVVIVQCGEM 177 (177)
T ss_pred CcEEEeecccC
Confidence 99999999975
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.5e-47 Score=325.88 Aligned_cols=159 Identities=73% Similarity=1.257 Sum_probs=151.4
Q ss_pred ceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCC-----cccCCCEEEEEEcCcEEEeCCCCCCCCCCCccc
Q 024478 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI 176 (267)
Q Consensus 102 ~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g-----~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~ 176 (267)
|+|||||.+++++.|+|+||||.+.||++|+||++||+++++ ++|+++.||||+|+|+||+||+..+++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 579999999999999999999999999999999999987666 339999999999999999999887788888999
Q ss_pred cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 024478 177 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 256 (267)
Q Consensus 177 ~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~ 256 (267)
++..+++|...++|+++|+|+||+.++++++|||||+|.+.++||++|+|||+|++|||||++|++++++ +++|.++|+
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~ 159 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV 159 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence 9999999988899999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred EEeeE
Q 024478 257 IINSG 261 (267)
Q Consensus 257 I~~cG 261 (267)
|.+||
T Consensus 160 I~~cG 164 (164)
T cd01926 160 IADCG 164 (164)
T ss_pred EEECC
Confidence 99997
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=340.30 Aligned_cols=166 Identities=63% Similarity=1.074 Sum_probs=161.3
Q ss_pred ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCcccc
Q 024478 98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 177 (267)
Q Consensus 98 ~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~ 177 (267)
+..++.||+||.|++...|||+++|..+..|+|++||..||+|++||||+|+.||||||.||+||||+++++|+||.+||
T Consensus 133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiy 212 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIY 212 (298)
T ss_pred hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEE
Q 024478 178 GSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRI 257 (267)
Q Consensus 178 g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I 257 (267)
|..|.||++.|+|..+|+|+|||+|+|+|||||||++....|||++|+|||+|++||+||+++++. ..+.++|.+.|+|
T Consensus 213 gkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~q-gsksgkp~qkv~i 291 (298)
T KOG0111|consen 213 GKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQ-GSKSGKPQQKVKI 291 (298)
T ss_pred cccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhc-cCCCCCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5588999999999
Q ss_pred EeeEEec
Q 024478 258 INSGELP 264 (267)
Q Consensus 258 ~~cGvL~ 264 (267)
.+||+|.
T Consensus 292 ~~cge~~ 298 (298)
T KOG0111|consen 292 VECGEIE 298 (298)
T ss_pred EeccccC
Confidence 9999974
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=8.7e-47 Score=327.73 Aligned_cols=163 Identities=67% Similarity=1.188 Sum_probs=153.9
Q ss_pred cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCC---C--cccCCCEEEEEEcCcEEEeCCCCCCCCCCCcc
Q 024478 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---G--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 175 (267)
Q Consensus 101 ~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~---g--~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s 175 (267)
++++||||.+++++.|+|+||||.+.||++|+||++||+|+. + .+|+++.||||+|+|+|||||+..++++|+.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 578999999999999999999999999999999999997643 2 24999999999999999999988788999999
Q ss_pred ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCC
Q 024478 176 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 254 (267)
Q Consensus 176 ~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~Vi-eGmdVL~~I~~~~t~~~~~P~~~ 254 (267)
+|+..|++|.+.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+ +|||||++|++++++++++|.++
T Consensus 98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~ 177 (186)
T PLN03149 98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA 177 (186)
T ss_pred ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999988899999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred eEEEeeEEe
Q 024478 255 CRIINSGEL 263 (267)
Q Consensus 255 V~I~~cGvL 263 (267)
|+|.+||++
T Consensus 178 i~I~~cG~~ 186 (186)
T PLN03149 178 CVISECGEM 186 (186)
T ss_pred eEEEeCEeC
Confidence 999999985
No 7
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=3.3e-46 Score=323.28 Aligned_cols=162 Identities=64% Similarity=1.080 Sum_probs=152.3
Q ss_pred cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccC-------CCcccCCCEEEEEEcCcEEEeCCCCCCCCCCC
Q 024478 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 173 (267)
Q Consensus 101 ~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~-------~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg 173 (267)
+++||||+++++++.|+|+||||.+.||++|+||++||+|+ .++ |+|+.||||+|+|+|||||+..+++.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 67899999999999999999999999999999999999753 346 9999999999999999999887788899
Q ss_pred ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 024478 174 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV 253 (267)
Q Consensus 174 ~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~ 253 (267)
.+++|..+++|...++|.++|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++.++ ++++|.+
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~ 172 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKK 172 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcC
Confidence 999999999998899999999999999999999999999999999999999999999999999999999877 4689999
Q ss_pred CeEEEeeEEec
Q 024478 254 PCRIINSGELP 264 (267)
Q Consensus 254 ~V~I~~cGvL~ 264 (267)
+|+|.+||+|.
T Consensus 173 ~v~I~~cg~~~ 183 (183)
T PTZ00060 173 PVVVTDCGELQ 183 (183)
T ss_pred CeEEEEeEEcC
Confidence 99999999984
No 8
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.5e-46 Score=335.11 Aligned_cols=164 Identities=36% Similarity=0.589 Sum_probs=151.7
Q ss_pred ccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCc--------ccCCCEEEEEEcC-cEEEeCCCCCC
Q 024478 98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKD-FMIQGGDFTEG 168 (267)
Q Consensus 98 ~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~-f~iQgGd~~~~ 168 (267)
+..+++||||+.+++++.|+|+||||.+.||+||+||++||+|+++. +|+|+.||||+++ |+||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 34688999999999999999999999999999999999999876542 3999999999985 8999999763
Q ss_pred CCCCCccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC
Q 024478 169 DGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT 248 (267)
Q Consensus 169 ~g~gg~s~~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~ 248 (267)
++.+++|..|++|++.++|+++|+|+|++.+++++||||||||.++|+||++|+|||+|++|||||++|++++++.+
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 23467789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeeEEecC
Q 024478 249 DYPKVPCRIINSGELPL 265 (267)
Q Consensus 249 ~~P~~~V~I~~cGvL~~ 265 (267)
++|.++|+|.+||+|..
T Consensus 205 grP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTG 221 (249)
T ss_pred CCCCCCeEEEECeEecC
Confidence 99999999999999964
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-46 Score=301.92 Aligned_cols=154 Identities=52% Similarity=0.900 Sum_probs=146.4
Q ss_pred cceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCC
Q 024478 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS 180 (267)
Q Consensus 101 ~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~ 180 (267)
.++|+++ |++|.|++|||-+.||+||.||.+|+ .+|| |+|..||||+++|||||||++ ++|.||.++||..
T Consensus 9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~k 79 (164)
T KOG0881|consen 9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDK 79 (164)
T ss_pred CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCC-CCCCCccccccch
Confidence 4677887 89999999999999999999999999 5899 999999999999999999997 8999999999999
Q ss_pred CCCCc-ccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024478 181 FEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 259 (267)
Q Consensus 181 ~~de~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~ 259 (267)
|+||- .+++|...|.|+|||.|||+|||||||||.+.+|||++|++||||+.||+|++++..+.||..++|..+++|.+
T Consensus 80 F~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIik 159 (164)
T KOG0881|consen 80 FEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIK 159 (164)
T ss_pred hhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEe
Confidence 99986 47999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEe
Q 024478 260 SGEL 263 (267)
Q Consensus 260 cGvL 263 (267)
+..+
T Consensus 160 a~~~ 163 (164)
T KOG0881|consen 160 AYPS 163 (164)
T ss_pred eecC
Confidence 7653
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=305.65 Aligned_cols=147 Identities=49% Similarity=0.840 Sum_probs=134.5
Q ss_pred CCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccC
Q 024478 111 GGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH 190 (267)
Q Consensus 111 ~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h 190 (267)
..|+.|+|+||||++.||+||+||++|| +.|| |+|+.||||+++|||||||++.+++.||+ +++|++|.+...|
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~ 77 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALNG 77 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccccccc
Confidence 4589999999999999999999999999 4788 99999999999999999999977788887 4889999988888
Q ss_pred CC--CeEEEEeeCC-CCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEEe
Q 024478 191 VG--PGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGEL 263 (267)
Q Consensus 191 ~~--~G~lsma~~g-p~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~----~~~P~~~V~I~~cGvL 263 (267)
.+ +|+|||||.+ ||+++|||||++.++||||++|+|||+|++|||+|++|++.++.. .+.|..+++|....++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 77 9999999999 999999999999999999999999999999999999999988775 3567788888887765
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.8e-43 Score=299.66 Aligned_cols=148 Identities=49% Similarity=0.818 Sum_probs=140.2
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcc-cccCC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 191 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~-~l~h~ 191 (267)
|+.|+|+||||++.||++|+||++||+ .|+ |+|+.||||+|+|+|||||+. +++.++.++++..+++|.. .++|+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCK--KGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh--cCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence 799999999999999999999999994 778 999999999999999999986 6788889999999999854 57898
Q ss_pred CCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEec
Q 024478 192 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELP 264 (267)
Q Consensus 192 ~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGvL~ 264 (267)
++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||+|++|++.+++++++|+++|+|.+|+++.
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.7e-43 Score=296.65 Aligned_cols=144 Identities=59% Similarity=0.942 Sum_probs=135.9
Q ss_pred CeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcc-cccC
Q 024478 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 190 (267)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~-~l~h 190 (267)
.|++|+|+||||.+.||++|+||++||+ .++ |+|+.||||+|+|++||||+. +++.++.++++..+++|.. .++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h 78 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHAR--NGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH 78 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence 3789999999999999999999999994 677 999999999999999999975 6788888899999999876 7889
Q ss_pred CCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024478 191 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 259 (267)
Q Consensus 191 ~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~ 259 (267)
.++|+|+||+.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++++++|.++|+|.+
T Consensus 79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 79 DRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 889999999999999999999999999999999999999999999999999999999999999999985
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=2.4e-43 Score=297.30 Aligned_cols=145 Identities=52% Similarity=0.843 Sum_probs=137.0
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcc-cccCC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 191 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~-~l~h~ 191 (267)
|+.|+|+||||++.||++|+||++||+ .++ |+|+.|||++|+|++||||+. +++.++.++++..+++|.. .++|+
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHh--cCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence 799999999999999999999999995 677 999999999999999999986 6788888899999999875 57888
Q ss_pred CCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 024478 192 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 261 (267)
Q Consensus 192 ~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cG 261 (267)
.+|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++++++|..+|+|.+|.
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.1e-42 Score=296.75 Aligned_cols=149 Identities=42% Similarity=0.667 Sum_probs=135.6
Q ss_pred CeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccC-------CCCCCC
Q 024478 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFEDE 184 (267)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g-------~~~~de 184 (267)
.|+.|+|+||||.+.||++|+||++||+ .++ |+|+.||||+++|+|||||+. +++.++.++++ ..+++|
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~--~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e 78 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCK--LKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE 78 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHh--cCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence 3789999999999999999999999994 677 999999999999999999986 66777776664 346666
Q ss_pred c-ccccCCCCeEEEEeeCCCCCCCceeEEEccC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 024478 185 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 262 (267)
Q Consensus 185 ~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~-~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGv 262 (267)
. ..++|+.+|+|+||+.++++++|||||++.+ .++||++|+|||+|++|||||++|++++++++++|.++|+|.+|++
T Consensus 79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i 158 (166)
T cd01921 79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHI 158 (166)
T ss_pred cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEE
Confidence 5 3678999999999999999999999999975 7999999999999999999999999999999999999999999999
Q ss_pred ec
Q 024478 263 LP 264 (267)
Q Consensus 263 L~ 264 (267)
|.
T Consensus 159 ~~ 160 (166)
T cd01921 159 LD 160 (166)
T ss_pred EC
Confidence 85
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=8.1e-43 Score=291.96 Aligned_cols=143 Identities=55% Similarity=0.950 Sum_probs=133.8
Q ss_pred CeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCc-ccccC
Q 024478 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH 190 (267)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~-~~l~h 190 (267)
.|+.|+|+||||.+.||++|+||++||+ .++ |+|+.|||++|+|++||||+. +++.++.++++..|++|. ..++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h 78 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKH 78 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCC
Confidence 3789999999999999999999999994 678 999999999999999999986 667788888999999985 56889
Q ss_pred CCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024478 191 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 259 (267)
Q Consensus 191 ~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~ 259 (267)
.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 79 ~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 79 TGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999999998 889999999974
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=319.76 Aligned_cols=183 Identities=43% Similarity=0.692 Sum_probs=161.0
Q ss_pred CCCCccchhhhhccccccccc---c--ccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCC
Q 024478 74 SKAPSVKYRRMFCVNSMAKDV---E--LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 148 (267)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g 148 (267)
..+.|++...|+.+..-+.++ + ....+.++-|..+. |+.|.|.|||+.+.+|++|+||+.|| ++|| |+|
T Consensus 243 ~vaasfTSTam~PvT~neaaiid~d~~ry~rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynn 316 (518)
T KOG0883|consen 243 AVAASFTSTAMTPVTKNEAAIIDEDDVRYTRVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNN 316 (518)
T ss_pred ceeceeccceeeecccchhhhccchhhhhccccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccc
Confidence 345666666666655432221 1 12456667776643 68999999999999999999999999 6999 999
Q ss_pred CEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEE
Q 024478 149 CSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVF 227 (267)
Q Consensus 149 ~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVF 227 (267)
+.|||.|.+|||||||++ |.|.||.+|+|.+|.||.. .+.|+.||+|||||.|||+|||||||+..++.+||++|+||
T Consensus 317 t~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIF 395 (518)
T KOG0883|consen 317 TIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIF 395 (518)
T ss_pred hHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceee
Confidence 999999999999999997 8999999999999999974 68999999999999999999999999999999999999999
Q ss_pred EEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEe
Q 024478 228 GHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 263 (267)
Q Consensus 228 G~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGvL 263 (267)
|+|+.|+|+|.+|+++++++.++|..+|+|.+.-+.
T Consensus 396 GrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 396 GRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred eeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 999999999999999999999999999999998775
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=7.8e-41 Score=286.72 Aligned_cols=156 Identities=44% Similarity=0.720 Sum_probs=143.0
Q ss_pred ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCC
Q 024478 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS 179 (267)
Q Consensus 100 ~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~ 179 (267)
.+.+|.++ |++|+|+||||.+.||++|+||++||+ +++ |+|+.||||+|+|+|||||+. +++.++.++|+.
T Consensus 4 ~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~--~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~ 74 (171)
T cd01925 4 TTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGE 74 (171)
T ss_pred cccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHh--cCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCC
Confidence 34456665 789999999999999999999999994 778 999999999999999999986 678888999999
Q ss_pred CCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCeEE
Q 024478 180 SFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRI 257 (267)
Q Consensus 180 ~~~de~~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~Vi-eGmdVL~~I~~~~t~~~~~P~~~V~I 257 (267)
.+++|.. .++|+++|+|+||+.++++++|||||++.+.++||++|+|||+|+ ++|++|++|++++++++++|.++|+|
T Consensus 75 ~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I 154 (171)
T cd01925 75 PFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKI 154 (171)
T ss_pred ccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEE
Confidence 9999875 567889999999999999999999999999999999999999999 46899999999999999999999999
Q ss_pred EeeEEec
Q 024478 258 INSGELP 264 (267)
Q Consensus 258 ~~cGvL~ 264 (267)
.+|+++.
T Consensus 155 ~~~~i~~ 161 (171)
T cd01925 155 TSVEVLE 161 (171)
T ss_pred EEEEEEc
Confidence 9999874
No 18
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=7.4e-41 Score=291.46 Aligned_cols=157 Identities=33% Similarity=0.541 Sum_probs=135.2
Q ss_pred cccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccc
Q 024478 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI 176 (267)
Q Consensus 97 ~~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~ 176 (267)
++....+|.|+ |+.|+|+||||.+.||++|+||++|| +.|| |+|+.|||++|+|+|||||+....+. ..
T Consensus 24 ~~~~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~ 92 (190)
T PRK10903 24 AAKGDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KK 92 (190)
T ss_pred ccCCCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCCC---CC
Confidence 33445566655 78999999999999999999999999 4788 99999999999999999997643221 22
Q ss_pred cCCCCCCCcccccCCCCeEEEEeeCC-CCCCCceeEEEccCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCC---
Q 024478 177 YGSSFEDESFVLKHVGPGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSR--- 247 (267)
Q Consensus 177 ~g~~~~de~~~l~h~~~G~lsma~~g-p~s~gSqFfItl~~~p~LDg-----~~tVFG~VieGmdVL~~I~~~~t~~--- 247 (267)
++.++.+|.....|+.+|+|+||+.+ +++++|||||++.+.++||+ +|+|||+|++|||||++|+++++++
T Consensus 93 ~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~ 172 (190)
T PRK10903 93 PNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGP 172 (190)
T ss_pred CCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCC
Confidence 46678888665667789999999965 89999999999999999984 8999999999999999999999976
Q ss_pred -CCCCCCCeEEEeeEEec
Q 024478 248 -TDYPKVPCRIINSGELP 264 (267)
Q Consensus 248 -~~~P~~~V~I~~cGvL~ 264 (267)
+++|.++|+|.+|++++
T Consensus 173 ~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 173 YQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CCCcccCCeEEEEEEEeC
Confidence 57999999999999875
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=319.75 Aligned_cols=153 Identities=54% Similarity=0.836 Sum_probs=144.3
Q ss_pred EEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCc
Q 024478 106 FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES 185 (267)
Q Consensus 106 fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~ 185 (267)
=+-+|.-|++|+|.|.||+++||+||+||...| ..|| |+|..|||||++||||+||+. |+|+||.+|+|+.|+||.
T Consensus 404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedef 479 (558)
T KOG0882|consen 404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEF 479 (558)
T ss_pred ccceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhc
Confidence 344455599999999999999999999999999 4899 999999999999999999997 899999999999999998
Q ss_pred c-cccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 024478 186 F-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 262 (267)
Q Consensus 186 ~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGv 262 (267)
. .|.|+++-+|+|||.|||+||||||||+.+.||||++|+|||||+.|||||++|+++.|+++++|.++|.|.+.-+
T Consensus 480 h~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 480 HPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred CcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 5 6899999999999999999999999999999999999999999999999999999999999999999999998643
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=8.7e-40 Score=278.70 Aligned_cols=145 Identities=36% Similarity=0.585 Sum_probs=125.5
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccCCC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~ 192 (267)
|+.|+|+||||.+.||+||+||++||+ .+| |+|+.||||+|+|+|||||+..+.+.. .++.++++|.....|+.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~~ 79 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNT 79 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcccccccCC
Confidence 899999999999999999999999994 778 999999999999999999976444322 23566777754444457
Q ss_pred CeEEEEeeCC-CCCCCceeEEEccCCCCCC-------C-CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEe
Q 024478 193 PGVLSMANAG-PNTNGSQFFICTVKTPWLD-------N-RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIIN 259 (267)
Q Consensus 193 ~G~lsma~~g-p~s~gSqFfItl~~~p~LD-------g-~~tVFG~VieGmdVL~~I~~~~t~~----~~~P~~~V~I~~ 259 (267)
+|+||||+.+ |++++|||||++.++++|| + +|+|||+|++|||||++|+++++++ +++|..+|+|.+
T Consensus 80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 159 (164)
T PRK10791 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159 (164)
T ss_pred CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence 9999999975 9999999999999988876 3 7999999999999999999999976 379999999999
Q ss_pred eEEe
Q 024478 260 SGEL 263 (267)
Q Consensus 260 cGvL 263 (267)
|.+.
T Consensus 160 ~~i~ 163 (164)
T PRK10791 160 VTVS 163 (164)
T ss_pred EEEe
Confidence 9775
No 21
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-41 Score=285.96 Aligned_cols=163 Identities=64% Similarity=1.133 Sum_probs=156.9
Q ss_pred ccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEE---EcCcEEEeCCCCCCCCCCCccc
Q 024478 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRI---IKDFMIQGGDFTEGDGTGGISI 176 (267)
Q Consensus 100 ~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Ri---i~~f~iQgGd~~~~~g~gg~s~ 176 (267)
++++||||++++++++|+++++||.+..|+|++||..||+|+++++|++..|||+ +++||+||||++.++++||.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 5789999999999999999999999999999999999999999999999999993 4579999999999999999999
Q ss_pred cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 024478 177 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 256 (267)
Q Consensus 177 ~g~~~~de~~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~ 256 (267)
|++.|+||++.++|..+|+|+|||.+||+|||||||++....|||++|+|||+|.+||+++++|+.. ..+++++.++|.
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~~i~ 160 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSKKIT 160 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 668999999999
Q ss_pred EEeeEEe
Q 024478 257 IINSGEL 263 (267)
Q Consensus 257 I~~cGvL 263 (267)
|.+||+|
T Consensus 161 i~dcg~l 167 (167)
T KOG0865|consen 161 IADCGQL 167 (167)
T ss_pred EecCCcC
Confidence 9999986
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.3e-39 Score=272.59 Aligned_cols=142 Identities=37% Similarity=0.530 Sum_probs=124.9
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccCCC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~ 192 (267)
|+.|+|+||||++.||++|+||++|| +.|| |+|+.||||+|+|+|||||+....+. ..++.++++|.....|+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 78999999999999999999999999 4788 99999999999999999998744322 223566777766656678
Q ss_pred CeEEEEeeCC-CCCCCceeEEEccCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEee
Q 024478 193 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINS 260 (267)
Q Consensus 193 ~G~lsma~~g-p~s~gSqFfItl~~~p~LDg-----~~tVFG~VieGmdVL~~I~~~~t~~~----~~P~~~V~I~~c 260 (267)
+|+|+||+.+ +++++|||||++.+.++||+ +|+|||+|++|||||++|++++++.+ ++|..+|+|.++
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 9999999975 89999999999999999995 79999999999999999999999774 699999999763
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=260.22 Aligned_cols=146 Identities=49% Similarity=0.767 Sum_probs=137.8
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcc-cccCC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 191 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~-~l~h~ 191 (267)
|..|+|.||||.+.+|++|+||+.|| ...| |++|.|||-+|+|++|+||++ ..|.||.+|+|.+|+||.. .++|+
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~ 82 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN 82 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence 66799999999999999999999999 4667 999999999999999999987 7899999999999999975 58999
Q ss_pred CCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEE
Q 024478 192 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGE 262 (267)
Q Consensus 192 ~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~-~~P~~~V~I~~cGv 262 (267)
-||.|+|||.|||+|||||||+.+..||||-+|+|||+||+|+|+|++|+++++++. .+|..++.|.+..+
T Consensus 83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999885 89999999998654
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.3e-37 Score=260.55 Aligned_cols=150 Identities=51% Similarity=0.845 Sum_probs=130.7
Q ss_pred EEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCC-ccccCCCCCC
Q 024478 105 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFED 183 (267)
Q Consensus 105 ~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg-~s~~g~~~~d 183 (267)
||||++++ .|+|+||||++.||++|+||++||+ .++ |+|+.|||++|+++||+|++......+. ....+.++++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT--SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD 75 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH--TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc--ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence 78888865 9999999999999999999999996 566 9999999999999999999875443111 1223446888
Q ss_pred Ccc--cccCCCCeEEEEeeCC--CCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024478 184 ESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 259 (267)
Q Consensus 184 e~~--~l~h~~~G~lsma~~g--p~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~ 259 (267)
|.. .+.| ++|+|+|++.+ +++++|||||+|.+.++||++|+|||+|++||+||++|++.+++. +|.++|+|.+
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~ 152 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS 152 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence 874 4555 89999999976 888999999999999999999999999999999999999998887 9999999999
Q ss_pred eEE
Q 024478 260 SGE 262 (267)
Q Consensus 260 cGv 262 (267)
||+
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.4e-37 Score=258.20 Aligned_cols=142 Identities=56% Similarity=0.888 Sum_probs=128.8
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCccccc-CC
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-HV 191 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~-h~ 191 (267)
|+.|+|+||||.+.||++|+||++||+ .++ |+|+.|||++|++++|+||+......+ ..++..+++|..... |+
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~--~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLAR--GGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHh--cCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 678999999999999999999999995 556 999999999999999999987544322 355778888887665 88
Q ss_pred CCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 024478 192 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 259 (267)
Q Consensus 192 ~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~ 259 (267)
++|+|+|++.+++++++||||+|.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999963
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1e-35 Score=256.30 Aligned_cols=129 Identities=39% Similarity=0.623 Sum_probs=110.0
Q ss_pred CeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCC-C-------------------C
Q 024478 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGD-G-------------------T 171 (267)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~-g-------------------~ 171 (267)
.|+.|+|+||||++.||+||+||++|| +.+| |+|+.||||+++|||||||+...+ + .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~ 79 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG 79 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence 478999999999999999999999999 4788 999999999999999999986431 0 1
Q ss_pred CCccccCCCCC-----CCcccccCCCCeEEEEeeCC--CCCCCceeEEEcc-------CCCCCCCCCeEEEEEEcCHHHH
Q 024478 172 GGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KTPWLDNRHVVFGHVIDGMDVV 237 (267)
Q Consensus 172 gg~s~~g~~~~-----de~~~l~h~~~G~lsma~~g--p~s~gSqFfItl~-------~~p~LDg~~tVFG~VieGmdVL 237 (267)
.+.++++..+. +++..++|+.+|+|+||+.+ +++++|||||++. +.++||++|+|||+|++|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 12344554442 45566778899999999987 7999999999998 7899999999999999999999
Q ss_pred HHhhcC
Q 024478 238 RKLESV 243 (267)
Q Consensus 238 ~~I~~~ 243 (267)
++|+..
T Consensus 160 ~~I~~g 165 (176)
T cd01924 160 RELKVG 165 (176)
T ss_pred HhhcCC
Confidence 999854
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-36 Score=277.17 Aligned_cols=159 Identities=42% Similarity=0.707 Sum_probs=149.3
Q ss_pred ccccccceEEEEEEECCeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCcc
Q 024478 96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 175 (267)
Q Consensus 96 ~~~~~~~~v~fdi~i~~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s 175 (267)
+.|..+-+|.+. |+.|+|.||||+..||++|.||++||. .|| |+|+.|||++|+|++||||++ ++|+||.+
T Consensus 7 ~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG--egy-y~nt~fhrlvp~f~~Qggdp~-~~gtGges 77 (439)
T KOG0885|consen 7 LEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL--EGY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGES 77 (439)
T ss_pred cCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH--hcc-ccCceeeeeccchhcccCCCC-CCCCCccc
Confidence 456677888877 889999999999999999999999994 889 999999999999999999986 89999999
Q ss_pred ccCCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCC
Q 024478 176 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKV 253 (267)
Q Consensus 176 ~~g~~~~de~~-~l~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~Vi-eGmdVL~~I~~~~t~~~~~P~~ 253 (267)
|||.+|.+|.+ .+.++++|+|+|||.+.+.|||||||||+++|||+++|++||+|+ +-+..+-+|..+.++.+.+|..
T Consensus 78 iyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~ 157 (439)
T KOG0885|consen 78 IYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVD 157 (439)
T ss_pred cccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCC
Confidence 99999999975 577889999999999999999999999999999999999999999 4799999999999999999999
Q ss_pred CeEEEeeEEe
Q 024478 254 PCRIINSGEL 263 (267)
Q Consensus 254 ~V~I~~cGvL 263 (267)
+-+|.+|.++
T Consensus 158 p~kI~s~EV~ 167 (439)
T KOG0885|consen 158 PPKIKSVEVL 167 (439)
T ss_pred ccceeeeEee
Confidence 9999999987
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=263.83 Aligned_cols=150 Identities=41% Similarity=0.641 Sum_probs=138.3
Q ss_pred CeeeeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCC-------CCCC
Q 024478 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS-------FEDE 184 (267)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~-------~~de 184 (267)
+|++|+|+|+||-+.+|.+|.||++|| +..| |+.|.||.|..+|.+|.|||+ |+|.||.++|+.. |+.|
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence 489999999999999999999999999 4677 999999999999999999998 6999999998753 4555
Q ss_pred c-ccccCCCCeEEEEeeCCCCCCCceeEEEccCC-CCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 024478 185 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKT-PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 262 (267)
Q Consensus 185 ~-~~l~h~~~G~lsma~~gp~s~gSqFfItl~~~-p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGv 262 (267)
. ..++|.+.|+|+|++.|.|.+||||||||+++ ..||++|+|||+|+||||+|.+|+.+-+|++++|.++|+|.+.-+
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 4 46899999999999999999999999999874 599999999999999999999999999999999999999999999
Q ss_pred ecC
Q 024478 263 LPL 265 (267)
Q Consensus 263 L~~ 265 (267)
|.+
T Consensus 162 LdD 164 (479)
T KOG0415|consen 162 LDD 164 (479)
T ss_pred ecC
Confidence 853
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=8e-05 Score=72.30 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCC----ccccC-CCCCC--Ccccc
Q 024478 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG----ISIYG-SSFED--ESFVL 188 (267)
Q Consensus 116 G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg----~s~~g-~~~~d--e~~~l 188 (267)
--|.|+|+.+-.|.-++-|..+| +.++ +++..|.||...+++|.||.....-.+| |+..+ ..|++ .++.+
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 38999999999999999999999 6888 9999999999999999998653333233 22222 11222 45667
Q ss_pred cCCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 024478 189 KHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 262 (267)
Q Consensus 189 ~h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~~t~~~~~P~~~V~I~~cGv 262 (267)
+|. .-++.....-....+-+|++.-...+.+..+..|||++..|-++++.|.+..++....|+.++.|.+...
T Consensus 189 K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 189 KHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 774 5566666655555677999998888889999999999999999999999999999999999998887654
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.23 E-value=0.032 Score=55.14 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccCCCCeE
Q 024478 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 195 (267)
Q Consensus 116 G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~G~ 195 (267)
--|.|+||.+.||+|+..|+++. |=+-..---..+|=..++.++-=|+.. ++..+.+||..-.....|.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 36899999999999999999986 111000112344555566444433322 2233555655555567888
Q ss_pred EEEeeCCCCCCCceeEEEccCC------C-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 196 LSMANAGPNTNGSQFFICTVKT------P-WLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 196 lsma~~gp~s~gSqFfItl~~~------p-~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
|++-|......|- .=|=|.++ . .+++. -++|+|+++++.|+++...
T Consensus 444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~gT-NIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSGT-NIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccCc-ceEEEecCChhHhcccccC
Confidence 8888754221110 11112222 2 23443 5669999999999988764
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.93 E-value=0.035 Score=54.94 Aligned_cols=104 Identities=24% Similarity=0.355 Sum_probs=66.7
Q ss_pred eeeeeEEEEEcCCCChHHHHHHHHHhccCCCcc---cCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCccccc
Q 024478 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG---YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK 189 (267)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~---Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~ 189 (267)
.-.=.+.+||.+ .+|.+++.|+.+. +.|.. +.-.+| | +.....|...+.|+..
T Consensus 198 ~IfTy~evE~~~-~~p~s~EH~la~~--~~G~~~Vd~~tsTf--------i-----------~d~~L~g~~~p~En~~-- 253 (503)
T TIGR03268 198 RIFTYVEVELDP-NAPVSVEHFLALM--EDGTFRVDYRTSTF--------I-----------SDDSLRGLDKPEENIE-- 253 (503)
T ss_pred EEEEEEEEEEcC-CCChhHHHHHHHH--hCCeEEEeeeecce--------E-----------ecccccCccCCccccC--
Confidence 333456667655 4999999999998 45540 111111 1 1112234445666654
Q ss_pred CCCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 190 HVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 190 h~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
...+|+|.+.+.|.+. -..||.-.+.+. .-.|+|+|+|+.|||+++--+..
T Consensus 254 ~R~rGtVTVRn~G~G~--G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 254 KRRRGAVTVRNSGVGE--GRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred cccceeEEEEeeccCc--eeEEEEcCCCCC-CcccceeEEEecceeeeecccCC
Confidence 3368999999987442 368887776553 34699999999999998755543
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.022 Score=54.92 Aligned_cols=103 Identities=27% Similarity=0.425 Sum_probs=67.4
Q ss_pred eeeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEE--EcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccCCC
Q 024478 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRI--IKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (267)
Q Consensus 115 ~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Ri--i~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~ 192 (267)
.=.+.+||.++ +|++++.|++|. +.|. .|| ..+-++ +.++....+.+.|++.+. .
T Consensus 202 fTy~eve~s~n-sP~saEH~lalm--edG~-------lri~~~tntfi-----------s~~~lq~~~~~~en~d~R--e 258 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALM--EDGT-------LRIDVTTNTFI-----------SDDTLQEEKVPEENFDLR--E 258 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHh--hcce-------EEEEEecccee-----------eccccccccCChhhhhhh--h
Confidence 34567777665 999999999998 4553 122 112111 112333555677777654 4
Q ss_pred CeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 193 PGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 193 ~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
+|.|...|.|-++ -.-||.-.+.+. --.|.|.|+|++||++++--.+.
T Consensus 259 rG~iTvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 259 RGAITVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred cceEEEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEEecccC
Confidence 8999999876432 367887665443 23689999999999988755543
No 33
>PRK00969 hypothetical protein; Provisional
Probab=95.86 E-value=0.03 Score=55.43 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=67.1
Q ss_pred eeeeEEEEEcCCCChHHHHHHHHHhccCCCc---ccCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccC
Q 024478 114 PAGRIVMGLFGDVVPKTAENFRALCTGEKGY---GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH 190 (267)
Q Consensus 114 ~~G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~---~Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h 190 (267)
-.=.+.+||.++ +|.+++.|+.+. +.|. .|.-.+|-+ .....|...+.|++. .
T Consensus 202 IfTy~eve~~~~-~p~s~EH~la~~--~~G~f~Vd~~tstfI~-------------------d~~L~g~~~p~En~~--~ 257 (508)
T PRK00969 202 IFTYVEVELDPG-APKSVEHFLALL--EDGTFEVDFETSTFIA-------------------DDRLQGLKIPEENFE--P 257 (508)
T ss_pred EEEEEEEEEcCC-CCchHHHHHHHH--hCCeEEEeeeecceEe-------------------eccccCccCCccccC--c
Confidence 334566677655 999999999999 4554 011112211 112234455666654 3
Q ss_pred CCCeEEEEeeCCCCCCCceeEEEccCCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 191 VGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 191 ~~~G~lsma~~gp~s~gSqFfItl~~~p~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
.++|+|.+.+.|.+. -..||.-.+.+. .-.|+|+|+|+.|||+++--.+.
T Consensus 258 R~~GtVTVRt~G~g~--G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~G 307 (508)
T PRK00969 258 RRRGTVTVRTAGVGV--GKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKEG 307 (508)
T ss_pred cccceEEEEeeccCc--eeEEEECCCCCC-CccceeEEEEecceeeeecccCC
Confidence 368999999987443 368897776553 34699999999999998755443
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.55 E-value=0.091 Score=52.14 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCcc-cCCCEEEEEEcCcEEEeCCCCCCCCCCCccccCCCCCCCcccccCCCCe
Q 024478 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYG-YKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG 194 (267)
Q Consensus 116 G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~-Y~g~~f~Rii~~f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~G 194 (267)
--|.||||.+.||+|++.|+++. ..-.. ---..+|=..++.++--|+.. ++..+.+||..-.....|
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~t--GL~~~~VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag 445 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVT--GLKTKPVGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAG 445 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhc--CCcccccceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccc
Confidence 36899999999999999999986 11110 112344555666555544432 233355566555566788
Q ss_pred EEEEeeCCCCCCCceeEEEccCC------C-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 195 VLSMANAGPNTNGSQFFICTVKT------P-WLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 195 ~lsma~~gp~s~gSqFfItl~~~------p-~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
.|++-|......|- .=|=|.++ . .+++ --++|+|+ ++|-|+++...
T Consensus 446 ~IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 446 EIGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred eEeeechhhhcCce-EEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence 88888754221110 01112222 2 2333 46779999 99999988775
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.25 Score=47.87 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=56.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcCc--EEEeCCCCCCCCCCCccccCCCCCCCcccccCCCCe
Q 024478 117 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF--MIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG 194 (267)
Q Consensus 117 ~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~f--~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~G 194 (267)
-|.||||.+.||+++..|.++.. -+..---....|-..++. ++--|+.. ++..+..||.......+|
T Consensus 377 iieIELyed~APrSv~yFRr~t~-l~~kpVGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~P~d~Ve~g 445 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG-LKTKPVGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENTPADTVEAG 445 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc-cccccccceEEEEEeCCceEEEEcCChH----------HhccCCCCCCchhheecc
Confidence 58999999999999999998862 111101123444445551 11222221 122233333322222334
Q ss_pred EEEEeeCCCCCCCceeEEEcc------CCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 195 VLSMANAGPNTNGSQFFICTV------KTPWLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 195 ~lsma~~gp~s~gSqFfItl~------~~p~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
.|+.-|......|. .=+-|. +...-=..--++|+|++|.+-|..|...
T Consensus 446 ~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 446 EIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred cccccccchhccce-eEEEeccccccCCCCCccccceeehhhccChHHhcccccC
Confidence 43333321100000 001122 2221112346889999999999999874
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=92.93 E-value=0.33 Score=41.02 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCcccCCCEEEEEEcC--cEEEeCCCCCCCCCCCccccCCCCCCCcccccCCCC
Q 024478 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP 193 (267)
Q Consensus 116 G~IvIeL~~~~aP~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~--f~iQgGd~~~~~g~gg~s~~g~~~~de~~~l~h~~~ 193 (267)
-.++.+|+.+.||+||+.|.++- - |.+..+|-...+ .++.-+++.. .....||.. .+..+
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T-~~P~p 69 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHT-VTPIP 69 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEE-SS--T
T ss_pred eEEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCc-ccCCC
Confidence 36889999999999999999986 2 566666655443 3444455330 112234433 23356
Q ss_pred eEEEEe--e-CCC--CCC-CceeEEEccCC--------CCCCCCCeEEEEEEcCHHHHHHhhc
Q 024478 194 GVLSMA--N-AGP--NTN-GSQFFICTVKT--------PWLDNRHVVFGHVIDGMDVVRKLES 242 (267)
Q Consensus 194 G~lsma--~-~gp--~s~-gSqFfItl~~~--------p~LDg~~tVFG~VieGmdVL~~I~~ 242 (267)
|-|.+- . ... +.. =++.=|.+... .|+-+ .+|++|++|+|-|.++-+
T Consensus 70 Gdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 70 GDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp TEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred CcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 777766 1 000 111 13344433322 23333 799999999998776654
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=38.93 E-value=29 Score=27.93 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCCeEEEEeeCCCCCCCceeEEEccCCC-------CCCCCCeEEEEEEcCHHHHHHhhcC
Q 024478 191 VGPGVLSMANAGPNTNGSQFFICTVKTP-------WLDNRHVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 191 ~~~G~lsma~~gp~s~gSqFfItl~~~p-------~LDg~~tVFG~VieGmdVL~~I~~~ 243 (267)
...|-|+....+.+ |-|-+++.| .+-....++|+|++|.+.++++...
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TT
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCC
Confidence 46888988754433 778787775 3445679999999999988887653
No 38
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=31.87 E-value=2.6e+02 Score=23.18 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=33.6
Q ss_pred eEEEEEEECCeeeeeEEEEEcCCC--Ch-------HHHHHHHHHhccCCCcccCCCEEEEEEcC
Q 024478 103 KVFFDVDIGGKPAGRIVMGLFGDV--VP-------KTAENFRALCTGEKGYGYKGCSFHRIIKD 157 (267)
Q Consensus 103 ~v~fdi~i~~t~~G~IvIeL~~~~--aP-------~tv~NF~~Lc~g~~g~~Y~g~~f~Rii~~ 157 (267)
++|++ +..||+.+..-.+. || ++++.|++.. ++-..-+-+.|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L--~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVL--KKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEec
Confidence 67776 66787777666443 33 3588999998 45333578999999887
No 39
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=26.87 E-value=38 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=23.9
Q ss_pred EEEccCCCCCCCC------CeEEEEEEcCHHHHHHhhcC
Q 024478 211 FICTVKTPWLDNR------HVVFGHVIDGMDVVRKLESV 243 (267)
Q Consensus 211 fItl~~~p~LDg~------~tVFG~VieGmdVL~~I~~~ 243 (267)
.+-++.+|--|.+ .-|+|+++++|+.|..+...
T Consensus 80 ClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~dG 118 (126)
T COG2164 80 CLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDDG 118 (126)
T ss_pred EEEecCCcCcccccCccchHHHHHHHHhhHHhhhcccCC
Confidence 3334566666655 36789999999999888754
Done!