Query 024479
Match_columns 267
No_of_seqs 193 out of 1191
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.2 3.6E-12 1.2E-16 94.2 3.4 42 1-42 19-60 (72)
2 2din_A Cell division cycle 5-l 99.1 3.4E-11 1.2E-15 87.4 3.9 44 1-45 19-62 (66)
3 1gv2_A C-MYB, MYB proto-oncoge 99.1 3E-11 1E-15 93.8 3.4 40 1-40 66-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 99.1 4E-11 1.4E-15 94.1 3.5 43 1-43 63-105 (107)
5 2ltp_A Nuclear receptor corepr 98.6 3.4E-11 1.1E-15 93.0 0.0 39 1-39 26-64 (89)
6 3zqc_A MYB3; transcription-DNA 99.0 1.5E-10 5.2E-15 93.7 3.4 44 1-44 64-107 (131)
7 1guu_A C-MYB, MYB proto-oncoge 99.0 1.9E-10 6.7E-15 79.5 3.2 38 1-38 13-51 (52)
8 2llk_A Cyclin-D-binding MYB-li 99.0 9.2E-11 3.1E-15 88.6 1.3 34 1-35 33-66 (73)
9 2d9a_A B-MYB, MYB-related prot 99.0 8.8E-11 3E-15 83.6 0.7 40 1-40 18-58 (60)
10 1ity_A TRF1; helix-turn-helix, 98.9 2.9E-10 1E-14 83.2 2.7 43 1-43 20-65 (69)
11 3osg_A MYB21; transcription-DN 98.9 8.4E-10 2.9E-14 88.9 4.6 39 1-39 72-110 (126)
12 1gvd_A MYB proto-oncogene prot 98.9 5.3E-10 1.8E-14 77.5 2.6 38 1-38 13-51 (52)
13 1w0t_A Telomeric repeat bindin 98.9 1.1E-09 3.7E-14 76.4 3.1 38 1-38 12-52 (53)
14 2dim_A Cell division cycle 5-l 98.8 4.3E-10 1.5E-14 82.4 0.7 42 1-42 19-61 (70)
15 1x41_A Transcriptional adaptor 98.8 1.8E-09 6E-14 77.4 3.0 37 1-37 18-55 (60)
16 1ign_A Protein (RAP1); RAP1,ye 98.8 1.4E-09 4.7E-14 98.6 1.9 42 1-42 18-65 (246)
17 2yum_A ZZZ3 protein, zinc fing 98.8 1.7E-09 5.7E-14 80.0 2.0 42 1-42 18-65 (75)
18 2cqr_A RSGI RUH-043, DNAJ homo 98.7 6.1E-09 2.1E-13 78.5 2.8 37 1-37 28-68 (73)
19 2ckx_A NGTRF1, telomere bindin 98.6 2.3E-08 7.8E-13 77.0 4.8 40 1-40 10-54 (83)
20 3sjm_A Telomeric repeat-bindin 98.6 1.5E-08 5.3E-13 74.0 3.1 39 1-39 21-62 (64)
21 2elk_A SPCC24B10.08C protein; 98.6 1.9E-08 6.6E-13 71.7 3.0 36 1-36 19-56 (58)
22 1x58_A Hypothetical protein 49 98.6 4.7E-08 1.6E-12 72.3 4.1 37 2-38 19-58 (62)
23 2cjj_A Radialis; plant develop 98.5 6.4E-08 2.2E-12 76.0 4.6 39 1-39 18-60 (93)
24 2juh_A Telomere binding protei 98.4 2E-07 6.7E-12 76.6 4.4 39 1-39 27-70 (121)
25 2aje_A Telomere repeat-binding 98.3 5.3E-07 1.8E-11 72.3 4.9 39 1-39 23-66 (105)
26 1h89_C C-MYB, MYB proto-oncoge 98.3 1.3E-07 4.4E-12 78.3 1.3 38 1-38 68-106 (159)
27 2yus_A SWI/SNF-related matrix- 98.3 2E-07 6.9E-12 70.8 2.1 35 1-35 28-62 (79)
28 1h8a_C AMV V-MYB, MYB transfor 98.2 1.8E-07 6.1E-12 75.1 0.8 38 1-38 37-75 (128)
29 3osg_A MYB21; transcription-DN 98.2 2.8E-07 9.4E-12 74.2 1.9 39 1-39 21-59 (126)
30 1gv2_A C-MYB, MYB proto-oncoge 98.2 2.2E-07 7.4E-12 72.0 1.0 37 1-37 14-51 (105)
31 2roh_A RTBP1, telomere binding 98.2 1.4E-06 4.8E-11 71.6 4.4 39 1-39 41-84 (122)
32 2eqr_A N-COR1, N-COR, nuclear 98.1 1.1E-06 3.6E-11 63.3 2.5 37 1-37 22-58 (61)
33 2k9n_A MYB24; R2R3 domain, DNA 98.1 6.6E-07 2.3E-11 70.0 1.4 39 1-39 11-50 (107)
34 3hm5_A DNA methyltransferase 1 97.9 1.5E-05 5E-10 62.9 5.5 43 2-44 41-88 (93)
35 3zqc_A MYB3; transcription-DNA 97.9 1.8E-06 6.3E-11 69.6 0.1 39 1-39 12-51 (131)
36 2iw5_B Protein corest, REST co 97.8 5.6E-06 1.9E-10 74.7 1.9 38 1-38 143-180 (235)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.7 1.8E-05 6E-10 59.3 3.0 37 1-38 18-58 (72)
38 1h89_C C-MYB, MYB proto-oncoge 97.4 1E-05 3.4E-10 66.9 -2.2 38 1-38 16-54 (159)
39 1ug2_A 2610100B20RIK gene prod 96.2 0.0042 1.4E-07 49.3 3.9 36 2-37 44-82 (95)
40 1wgx_A KIAA1903 protein; MYB D 95.8 0.0037 1.3E-07 47.2 2.0 34 3-36 20-57 (73)
41 2lr8_A CAsp8-associated protei 94.6 0.0019 6.6E-08 48.8 0.0 36 1-37 24-62 (70)
42 4iej_A DNA methyltransferase 1 95.3 0.023 8E-07 44.8 5.3 42 2-43 41-87 (93)
43 1fex_A TRF2-interacting telome 94.2 0.03 1E-06 40.1 2.9 36 2-37 13-58 (59)
44 4a69_C Nuclear receptor corepr 93.2 0.075 2.6E-06 41.2 3.8 34 2-35 54-87 (94)
45 2yqk_A Arginine-glutamic acid 93.1 0.11 3.9E-06 37.2 4.3 33 3-35 21-54 (63)
46 1ign_A Protein (RAP1); RAP1,ye 91.8 0.088 3E-06 47.9 3.0 28 12-39 173-200 (246)
47 4eef_G F-HB80.4, designed hema 91.0 0.033 1.1E-06 42.4 -0.6 23 11-33 44-66 (74)
48 2crg_A Metastasis associated p 90.8 0.21 7.2E-06 36.6 3.6 32 3-34 20-52 (70)
49 1h8a_C AMV V-MYB, MYB transfor 90.6 0.021 7E-07 45.4 -2.1 25 16-40 1-25 (128)
50 2xag_B REST corepressor 1; ami 89.9 0.11 3.8E-06 51.0 1.9 33 2-34 391-423 (482)
51 2ebi_A DNA binding protein GT- 83.7 0.46 1.6E-05 35.3 1.9 32 12-44 35-70 (86)
52 4b4c_A Chromodomain-helicase-D 69.5 4.7 0.00016 33.8 4.3 42 2-43 18-64 (211)
53 1ofc_X ISWI protein; nuclear p 56.5 13 0.00044 34.5 5.0 37 2-38 121-158 (304)
54 3hug_A RNA polymerase sigma fa 45.3 25 0.00086 25.3 4.1 35 2-37 45-79 (92)
55 2o8x_A Probable RNA polymerase 43.5 24 0.00082 23.4 3.5 35 2-37 23-57 (70)
56 2xag_B REST corepressor 1; ami 39.8 6.1 0.00021 38.9 0.0 32 3-34 201-232 (482)
57 1ku3_A Sigma factor SIGA; heli 35.3 38 0.0013 23.2 3.6 35 2-37 18-56 (73)
58 1w1n_A Phosphatidylinositol 3- 33.8 4.9 0.00017 25.8 -1.2 15 125-139 16-30 (33)
59 1x3u_A Transcriptional regulat 30.2 63 0.0022 21.9 4.1 32 2-35 24-55 (79)
60 3ulq_B Transcriptional regulat 30.1 54 0.0018 24.1 3.9 34 2-37 37-70 (90)
61 2p7v_B Sigma-70, RNA polymeras 29.3 40 0.0014 22.8 2.8 28 9-37 24-51 (68)
62 3c57_A Two component transcrip 27.5 63 0.0022 23.6 3.8 32 2-35 35-66 (95)
63 1je8_A Nitrate/nitrite respons 26.0 62 0.0021 23.0 3.5 32 2-35 29-60 (82)
64 2yqf_A Ankyrin-1; death domain 23.5 67 0.0023 24.6 3.4 27 4-31 23-49 (111)
65 1wxp_A THO complex subunit 1; 21.2 86 0.0029 23.9 3.6 27 4-31 23-49 (110)
66 2lm1_A Lysine-specific demethy 20.9 1.4E+02 0.0047 22.5 4.7 29 11-39 66-98 (107)
67 2rnj_A Response regulator prot 20.4 69 0.0024 22.9 2.8 32 2-35 37-68 (91)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=3.6e-12 Score=94.24 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=39.2
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk 42 (267)
+|+++|.+||++|..||++|||||+++|||||+.+++++++.
T Consensus 19 ~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 19 LFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999988655
No 2
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.4e-11 Score=87.39 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=40.1
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhcC
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQT 45 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~~ 45 (267)
+|+++|++||++|..||+ |||||+++||+||+.+|++.+++...
T Consensus 19 ~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 19 KLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp HHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 478999999999999999 99999999999999999998876543
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.11 E-value=3e-11 Score=93.83 Aligned_cols=40 Identities=53% Similarity=0.948 Sum_probs=35.6
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKkl 40 (267)
+|+++|.+||++|+.||++|||||+++|||||+.++++++
T Consensus 66 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 66 IIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999998864
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.09 E-value=4e-11 Score=94.05 Aligned_cols=43 Identities=28% Similarity=0.587 Sum_probs=39.2
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhh
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKL 43 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~ 43 (267)
+|+++|.+||++|+.||++|||||+++|||||+.++++..+..
T Consensus 63 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 63 LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 4889999999999999999999999999999999998876543
No 5
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-11 Score=92.97 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=36.8
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|+++|.+||++|..||.+|||||+++|||||+.++++.
T Consensus 26 ~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 26 TAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 588999999999999999999999999999999998865
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.99 E-value=1.5e-10 Score=93.69 Aligned_cols=44 Identities=39% Similarity=0.723 Sum_probs=40.0
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHHHHhhc
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ 44 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk~~ 44 (267)
+|+++|.+||++|+.||++|||||+++|||||+.++++++....
T Consensus 64 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 64 TIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp HHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 47899999999999999999999999999999999998865444
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.99 E-value=1.9e-10 Score=79.53 Aligned_cols=38 Identities=34% Similarity=0.645 Sum_probs=35.2
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|++++.+||+ +|..||++|||||+++|++||+.+|++
T Consensus 13 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999998 999999999999999999999998864
No 8
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.98 E-value=9.2e-11 Score=88.55 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=31.9
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
+|+++|++||++|+.||++| |||+++|||||+.+
T Consensus 33 ~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 33 KLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp HHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 48999999999999999999 99999999999954
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=8.8e-11 Score=83.59 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=36.4
Q ss_pred CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKkl 40 (267)
+|+++|.+|| ++|..||++|||||+++||+||+.+|++.+
T Consensus 18 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 18 QLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp HHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred HHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4789999999 699999999999999999999999887653
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.94 E-value=2.9e-10 Score=83.19 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=39.1
Q ss_pred CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHHHHHhh
Q 024479 1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKKLKKL 43 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrKklkk~ 43 (267)
+|+++|.+|| ++|..||.+|| |||+++||+||+.+|++.+.+.
T Consensus 20 ~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 20 NLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp HHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 4789999999 79999999999 9999999999999999886543
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.90 E-value=8.4e-10 Score=88.91 Aligned_cols=39 Identities=38% Similarity=0.668 Sum_probs=36.3
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|+++|.+||++|+.||++|||||+++|||||+.++++.
T Consensus 72 ~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 72 LLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999888764
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.89 E-value=5.3e-10 Score=77.48 Aligned_cols=38 Identities=32% Similarity=0.624 Sum_probs=34.5
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|++++.+||+ +|..||++|||||+++||+||+.+|++
T Consensus 13 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999997 599999999999999999999988753
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.86 E-value=1.1e-09 Score=76.45 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=35.3
Q ss_pred CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrK 38 (267)
+|+++|.+|| ++|..||.+|| |||+++|++||+.+++.
T Consensus 12 ~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 12 NLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 4789999999 79999999999 99999999999998875
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.3e-10 Score=82.39 Aligned_cols=42 Identities=29% Similarity=0.534 Sum_probs=38.3
Q ss_pred CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479 1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk 42 (267)
+|+++|.+|| ++|..||.+|||||+++|++||+.+|++.+++
T Consensus 19 ~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 19 ILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp HHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred HHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4789999999 89999999999999999999999999877554
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.81 E-value=1.8e-09 Score=77.35 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=34.5
Q ss_pred CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
+|++++.+|| ++|..||++|||||+++|++||+.+|.
T Consensus 18 ~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4789999999 899999999999999999999998775
No 16
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.78 E-value=1.4e-09 Score=98.63 Aligned_cols=42 Identities=26% Similarity=0.493 Sum_probs=39.0
Q ss_pred CHHHHHHHhcCc------HHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479 1 MIIHLQALLGNR------WAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42 (267)
Q Consensus 1 LIi~L~~elGnK------Ws~IAk~LPGRTDNqIKNrWnt~LrKklkk 42 (267)
+|+++|.++|++ |..||++|||||+|+|||||+.+|++++..
T Consensus 18 ~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~ 65 (246)
T 1ign_A 18 FILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY 65 (246)
T ss_dssp HHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred HHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhccc
Confidence 489999999986 999999999999999999999999998753
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=80.04 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=37.6
Q ss_pred CHHHHHHHhc------CcHHHHhccCCCCChhHHHHHHHHHHHHHHHh
Q 024479 1 MIIHLQALLG------NRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 42 (267)
Q Consensus 1 LIi~L~~elG------nKWs~IAk~LPGRTDNqIKNrWnt~LrKklkk 42 (267)
+|++++.+|| ++|..||.+|||||+++|++||+.+|++.++.
T Consensus 18 ~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 18 KLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp HHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4789999999 79999999999999999999999888876543
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=6.1e-09 Score=78.47 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=33.6
Q ss_pred CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
+|++++++|| ++|.+||++|||||+++||+||+.+++
T Consensus 28 ~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 28 LLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4788999999 899999999999999999999997653
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.64 E-value=2.3e-08 Score=76.99 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=36.3
Q ss_pred CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKKL 40 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKkl 40 (267)
+|+++|++||+ +|+.|++. |+|||+++||+||++++++.-
T Consensus 10 ~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 10 ALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37899999998 99999995 899999999999999988663
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.62 E-value=1.5e-08 Score=74.02 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=34.8
Q ss_pred CHHHHHHHhc-CcHHHHhccCC--CCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLP--QRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LP--GRTDNqIKNrWnt~LrKk 39 (267)
+|++++.+|| .+|..||+++| |||+.+||+||+.++|..
T Consensus 21 ~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 21 WVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp HHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 3789999999 58999999876 999999999999988754
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.60 E-value=1.9e-08 Score=71.69 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=33.1
Q ss_pred CHHHHHHHhc-CcHHHHhccCC-CCChhHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLP-QRTDNDIKNYWNTHL 36 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LP-GRTDNqIKNrWnt~L 36 (267)
+|++++++|| ++|..||++|| |||+++|++||+.+.
T Consensus 19 ~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 19 LLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4789999999 89999999999 999999999998653
No 22
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.55 E-value=4.7e-08 Score=72.32 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=34.4
Q ss_pred HHHHHHHhcCcHHHHh---ccCCCCChhHHHHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIA---SYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 2 Ii~L~~elGnKWs~IA---k~LPGRTDNqIKNrWnt~LrK 38 (267)
|+++|++||.+|..|+ .+|+|||+.+||++|+.++|+
T Consensus 19 L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 19 LFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp HHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 7899999999999999 689999999999999987764
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.53 E-value=6.4e-08 Score=75.99 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=34.5
Q ss_pred CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|++++.+|| ++|.+||++|||||+++||+||+.+++..
T Consensus 18 ~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 18 AFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3678899995 89999999999999999999999877653
No 24
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.39 E-value=2e-07 Score=76.59 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=35.6
Q ss_pred CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKk 39 (267)
+|+++|++||+ +|+.|++. |+|||+++||+||+.++++.
T Consensus 27 ~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 27 ALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp HHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 37899999998 99999998 49999999999999999864
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.30 E-value=5.3e-07 Score=72.32 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=35.2
Q ss_pred CHHHHHHHhcC-cHHHHhccC----CCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYL----PQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~L----PGRTDNqIKNrWnt~LrKk 39 (267)
+|++.|++||+ +|+.|++.+ +|||+++||++|+.++++.
T Consensus 23 ~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 23 ALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp HHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 37899999998 999999965 9999999999999988765
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.30 E-value=1.3e-07 Score=78.29 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=34.4
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|+++|.+||+ +|..||.+|||||+++|++||+.+|.+
T Consensus 68 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp HHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 37899999996 699999999999999999999987754
No 27
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.30 E-value=2e-07 Score=70.80 Aligned_cols=35 Identities=9% Similarity=0.276 Sum_probs=32.4
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
+|++++.+||++|..||++|++||+.+|++||+.+
T Consensus 28 ~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 47899999999999999999999999999999744
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.24 E-value=1.8e-07 Score=75.06 Aligned_cols=38 Identities=29% Similarity=0.570 Sum_probs=34.2
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|++++.+||. +|..||.+|||||+++|++||+.+|.+
T Consensus 37 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 37 RVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp HHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 37899999996 699999999999999999999987753
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.24 E-value=2.8e-07 Score=74.16 Aligned_cols=39 Identities=26% Similarity=0.535 Sum_probs=35.7
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|++++.+||.+|..||.+|||||+.+|+.||+.+|.+.
T Consensus 21 ~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 21 MLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence 478999999999999999999999999999999887544
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.23 E-value=2.2e-07 Score=71.96 Aligned_cols=37 Identities=32% Similarity=0.649 Sum_probs=33.7
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
+|++++.+||. +|..||.+|||||+.+|+.||+.+|.
T Consensus 14 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 47899999997 69999999999999999999998764
No 31
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.15 E-value=1.4e-06 Score=71.60 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=35.3
Q ss_pred CHHHHHHHhcC-cHHHHhcc----CCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASY----LPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~----LPGRTDNqIKNrWnt~LrKk 39 (267)
.|+++|++||. +|+.|++. |+|||+++||+||++++++.
T Consensus 41 ~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 41 LLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 37899999997 99999996 49999999999999998765
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=63.29 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.2
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
++++++.+||.+|..||.+|||||..+|++||+...+
T Consensus 22 ~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 22 IFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp HHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999997543
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.11 E-value=6.6e-07 Score=69.97 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=35.0
Q ss_pred CHHHHHHHhcC-cHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN-RWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elGn-KWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|++++.+||. +|..||.+|||||+.+|+.||+.+|.+.
T Consensus 11 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 11 KLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp HHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 47899999996 8999999999999999999999887643
No 34
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.89 E-value=1.5e-05 Score=62.94 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHhcCcHHHHhccC-----CCCChhHHHHHHHHHHHHHHHhhc
Q 024479 2 IIHLQALLGNRWAAIASYL-----PQRTDNDIKNYWNTHLKKKLKKLQ 44 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~L-----PGRTDNqIKNrWnt~LrKklkk~~ 44 (267)
|++|+++||-||..|+.++ ++||..+||+||+...++.++...
T Consensus 41 Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 41 LFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999 589999999999999887766553
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.87 E-value=1.8e-06 Score=69.62 Aligned_cols=39 Identities=28% Similarity=0.614 Sum_probs=35.2
Q ss_pred CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
+|++++.+|| ..|..||.+|||||+.+|+.||+.+|.+.
T Consensus 12 ~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 12 LIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp HHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCcc
Confidence 3789999999 67999999999999999999999888644
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.80 E-value=5.6e-06 Score=74.69 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=34.3
Q ss_pred CHHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
++++.+.+||+.|..||++|++||+++|||+|+.+.+|
T Consensus 143 lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 143 LAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999976654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.70 E-value=1.8e-05 Score=59.31 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.2
Q ss_pred CHHHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|.+++++|+ +||.+||.+| |||.++|++||+.+++.
T Consensus 18 ~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 18 QLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 3678899997 8999999998 99999999999977554
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.40 E-value=1e-05 Score=66.89 Aligned_cols=38 Identities=34% Similarity=0.660 Sum_probs=10.2
Q ss_pred CHHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 1 LIi~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
+|++++.+|| .+|..||.+|||||..+|+.||..+|.+
T Consensus 16 ~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 54 (159)
T 1h89_C 16 KLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 54 (159)
T ss_dssp ---------------------------CHHHHHHTTTCT
T ss_pred HHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCC
Confidence 4788999999 5899999999999999999999987754
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.15 E-value=0.0042 Score=49.28 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=33.1
Q ss_pred HHHHHHHhcC---cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~elGn---KWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
|+..+++-|. .|+.||+.|.+|+.|+|+|||+.+++
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7888899997 79999999999999999999998775
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.76 E-value=0.0037 Score=47.21 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHhc----CcHHHHhccCCCCChhHHHHHHHHHH
Q 024479 3 IHLQALLG----NRWAAIASYLPQRTDNDIKNYWNTHL 36 (267)
Q Consensus 3 i~L~~elG----nKWs~IAk~LPGRTDNqIKNrWnt~L 36 (267)
.+....|+ .+|..||.++||||..+|+.||..++
T Consensus 20 e~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 20 HCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp HHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34455666 57999999999999999999998663
No 41
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.63 E-value=0.0019 Score=48.75 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=31.6
Q ss_pred CHHHHHHHhcC---cHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 1 MIIHLQALLGN---RWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 1 LIi~L~~elGn---KWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
.|+..+++-|. .|+.||..| +|+.++|+|||..+++
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 36778889998 799999999 9999999999997654
No 42
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.34 E-value=0.023 Score=44.79 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHhcCcHHHHhccCC-----CCChhHHHHHHHHHHHHHHHhh
Q 024479 2 IIHLQALLGNRWAAIASYLP-----QRTDNDIKNYWNTHLKKKLKKL 43 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LP-----GRTDNqIKNrWnt~LrKklkk~ 43 (267)
|++|..+|+=||..|+.++. .||..++|+||+...++.++..
T Consensus 41 LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 41 LFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999874 7999999999999888766543
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=94.21 E-value=0.03 Score=40.15 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=31.6
Q ss_pred HHHHHHHh--------cCc-HHHHhc-cCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQALL--------GNR-WAAIAS-YLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~el--------GnK-Ws~IAk-~LPGRTDNqIKNrWnt~Lr 37 (267)
|++.+.++ ||+ |..|+. .+|+||-...++||..+|+
T Consensus 13 L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 13 ILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 67788888 877 999999 7999999999999987663
No 44
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=93.21 E-value=0.075 Score=41.20 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
..+.+.+||..|.+|+.+||+||..+|-.+++..
T Consensus 54 F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 54 FREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 3567899999999999999999999999998854
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.05 E-value=0.11 Score=37.25 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHhcCcHHHHhc-cCCCCChhHHHHHHHHH
Q 024479 3 IHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 3 i~L~~elGnKWs~IAk-~LPGRTDNqIKNrWnt~ 35 (267)
.+.+.+||..|..|++ +||.||-.+|..+|+..
T Consensus 21 e~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 21 VKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp HHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 4678999999999999 69999999999999854
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.84 E-value=0.088 Score=47.87 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=25.7
Q ss_pred cHHHHhccCCCCChhHHHHHHHHHHHHH
Q 024479 12 RWAAIASYLPQRTDNDIKNYWNTHLKKK 39 (267)
Q Consensus 12 KWs~IAk~LPGRTDNqIKNrWnt~LrKk 39 (267)
.|..||+++|+||++.+|+||+..|++.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999999877654
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=90.99 E-value=0.033 Score=42.43 Aligned_cols=23 Identities=30% Similarity=0.782 Sum_probs=21.4
Q ss_pred CcHHHHhccCCCCChhHHHHHHH
Q 024479 11 NRWAAIASYLPQRTDNDIKNYWN 33 (267)
Q Consensus 11 nKWs~IAk~LPGRTDNqIKNrWn 33 (267)
.||.+||..+||||..+|+.++.
T Consensus 44 dRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 44 DRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp SSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cHHHHHHHHcCCCCHHHHHHHHH
Confidence 48999999999999999999875
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=90.77 E-value=0.21 Score=36.62 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=28.9
Q ss_pred HHHHHHhcCcHHHHhc-cCCCCChhHHHHHHHH
Q 024479 3 IHLQALLGNRWAAIAS-YLPQRTDNDIKNYWNT 34 (267)
Q Consensus 3 i~L~~elGnKWs~IAk-~LPGRTDNqIKNrWnt 34 (267)
.+.+.+||..|..|++ +||+||-.+|..+++.
T Consensus 20 e~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 20 EEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp HHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4567899999999999 6999999999999984
No 49
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=90.65 E-value=0.021 Score=45.44 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=2.1
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHH
Q 024479 16 IASYLPQRTDNDIKNYWNTHLKKKL 40 (267)
Q Consensus 16 IAk~LPGRTDNqIKNrWnt~LrKkl 40 (267)
||+.|||||..+|+.||..+|.+.+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~ 25 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPEL 25 (128)
T ss_dssp ---------------------CTTC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCC
Confidence 8999999999999999998876543
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.89 E-value=0.11 Score=51.00 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt 34 (267)
.++.+.+||..|..||..+..||..+||++|..
T Consensus 391 f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 391 AVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp HHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 467789999999999999999999999999864
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=83.71 E-value=0.46 Score=35.26 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=25.1
Q ss_pred cHHHHhccCC----CCChhHHHHHHHHHHHHHHHhhc
Q 024479 12 RWAAIASYLP----QRTDNDIKNYWNTHLKKKLKKLQ 44 (267)
Q Consensus 12 KWs~IAk~LP----GRTDNqIKNrWnt~LrKklkk~~ 44 (267)
.|..||..|. .||..+|+++|+.+.+ ..++..
T Consensus 35 ~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k-~Yk~~k 70 (86)
T 2ebi_A 35 LWEQISSKMREKGFDRSPDMCTDKWRNLLK-EFKKAK 70 (86)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCSCS
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHHH
Confidence 5999999863 7999999999997655 454443
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=69.46 E-value=4.7 Score=33.83 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=33.9
Q ss_pred HHHHHHHhc---CcHHHHhc--cCCCCChhHHHHHHHHHHHHHHHhh
Q 024479 2 IIHLQALLG---NRWAAIAS--YLPQRTDNDIKNYWNTHLKKKLKKL 43 (267)
Q Consensus 2 Ii~L~~elG---nKWs~IAk--~LPGRTDNqIKNrWnt~LrKklkk~ 43 (267)
+++.+..|| .+|..|+. .|+++|..+|+.++...+..-.+..
T Consensus 18 fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 18 FIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp HHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 577889999 68999996 4899999999999887776544433
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=56.49 E-value=13 Score=34.45 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHHHHHHhc-CcHHHHhccCCCCChhHHHHHHHHHHHH
Q 024479 2 IIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 38 (267)
Q Consensus 2 Ii~L~~elG-nKWs~IAk~LPGRTDNqIKNrWnt~LrK 38 (267)
.++....|| +.|..||..++|.|..+|+.|.+...++
T Consensus 121 Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 121 FIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp HHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 356778999 5799999999999999999998887764
No 54
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.28 E-value=25 Score=25.31 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
|+.|+-..|-....||..| |-+.+.||.+.+..++
T Consensus 45 vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 45 VIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 5666667788999999998 8999999998875443
No 55
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.46 E-value=24 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.9
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
|+.++-..|-.+..||..| |-+.+.|+++.+..++
T Consensus 23 il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 23 ALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4566667789999999998 8899999997765443
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=39.84 E-value=6.1 Score=38.86 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHhcCcHHHHhccCCCCChhHHHHHHHH
Q 024479 3 IHLQALLGNRWAAIASYLPQRTDNDIKNYWNT 34 (267)
Q Consensus 3 i~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt 34 (267)
.+.+.+||..|..|+++||+|+-.+|-.|||.
T Consensus 201 e~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 201 EQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------
T ss_pred HHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 45678899999999999999999999988664
No 57
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.29 E-value=38 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHH----hcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQAL----LGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~e----lGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
|+.++-. -|-.|..||..| |-+...|+.+....++
T Consensus 18 il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALR 56 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4445444 578899999998 8999999997765544
No 58
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=33.82 E-value=4.9 Score=25.80 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.5
Q ss_pred ccchHhHHHHHhhhh
Q 024479 125 ASNAENISRLLQNWM 139 (267)
Q Consensus 125 ass~enIsrlL~gwm 139 (267)
|.+.+|+++|..||+
T Consensus 16 At~~~NL~~my~GW~ 30 (33)
T 1w1n_A 16 ATSIERLCQHYIGWC 30 (33)
T ss_dssp HHHHHHHHTTSCSCC
T ss_pred hcCHHHHHHHhhhcc
Confidence 678899999999997
No 59
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.25 E-value=63 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=24.3
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
|+.++ ..|-....||..| |-+.+.|+++.+..
T Consensus 24 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 24 VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANV 55 (79)
T ss_dssp HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 45555 5678889999998 88889998866543
No 60
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.10 E-value=54 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
|+.++. -|-....||..| |-+.+-|++|.+..++
T Consensus 37 Vl~l~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 37 ILQEVE-KGFTNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455555 788899999998 8999999997765443
No 61
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.29 E-value=40 Score=22.83 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.2
Q ss_pred hcCcHHHHhccCCCCChhHHHHHHHHHHH
Q 024479 9 LGNRWAAIASYLPQRTDNDIKNYWNTHLK 37 (267)
Q Consensus 9 lGnKWs~IAk~LPGRTDNqIKNrWnt~Lr 37 (267)
-|-.+..||..| |-+.+.|+.+....++
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 478899999998 9999999997665443
No 62
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.50 E-value=63 Score=23.59 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
|+.++ ..|-....||..| |-+.+.|++|.+..
T Consensus 35 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~ 66 (95)
T 3c57_A 35 LLGLL-SEGLTNKQIADRM-FLAEKTVKNYVSRL 66 (95)
T ss_dssp HHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 56666 7788899999998 88999999876543
No 63
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.01 E-value=62 Score=22.99 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
|+.++ ..|-....||..| |-+.+.|+++.+..
T Consensus 29 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~ 60 (82)
T 1je8_A 29 ILKLI-AQGLPNKMIARRL-DITESTVKVHVKHM 60 (82)
T ss_dssp HHHHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 45665 6788899999998 88999999876543
No 64
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.50 E-value=67 Score=24.56 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.9
Q ss_pred HHHHHhcCcHHHHhccCCCCChhHHHHH
Q 024479 4 HLQALLGNRWAAIASYLPQRTDNDIKNY 31 (267)
Q Consensus 4 ~L~~elGnKWs~IAk~LPGRTDNqIKNr 31 (267)
.+-..+|..|..+|+.| |=++++|.+.
T Consensus 23 ~ia~~lg~~Wk~LAr~L-g~s~~~I~~I 49 (111)
T 2yqf_A 23 VISEHLGLSWAELAREL-QFSVEDINRI 49 (111)
T ss_dssp HHHHHHTTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHc-CCCHHHHHHH
Confidence 45578899999999999 8999888774
No 65
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.16 E-value=86 Score=23.93 Aligned_cols=27 Identities=30% Similarity=0.690 Sum_probs=22.9
Q ss_pred HHHHHhcCcHHHHhccCCCCChhHHHHH
Q 024479 4 HLQALLGNRWAAIASYLPQRTDNDIKNY 31 (267)
Q Consensus 4 ~L~~elGnKWs~IAk~LPGRTDNqIKNr 31 (267)
.+...+|..|..+|+.| |=++++|++.
T Consensus 23 ~ia~~lg~~Wk~LAr~L-g~~~~~I~~i 49 (110)
T 1wxp_A 23 VFANKLGEQWKILAPYL-EMKDSEIRQI 49 (110)
T ss_dssp HHHHHHTTTHHHHTTTT-TCCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHh-CCCHHHHHHH
Confidence 45578899999999999 8899988873
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.88 E-value=1.4e+02 Score=22.53 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=20.5
Q ss_pred CcHHHHhccCCCCC----hhHHHHHHHHHHHHH
Q 024479 11 NRWAAIASYLPQRT----DNDIKNYWNTHLKKK 39 (267)
Q Consensus 11 nKWs~IAk~LPGRT----DNqIKNrWnt~LrKk 39 (267)
++|..|+..|---. ...+|.+|...|-.-
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 67999999983222 467888887776543
No 67
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.43 E-value=69 Score=22.92 Aligned_cols=32 Identities=25% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHHHhcCcHHHHhccCCCCChhHHHHHHHHH
Q 024479 2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTH 35 (267)
Q Consensus 2 Ii~L~~elGnKWs~IAk~LPGRTDNqIKNrWnt~ 35 (267)
|+.++ ..|-....||..| |-+.+.|+++.+..
T Consensus 37 vl~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~ 68 (91)
T 2rnj_A 37 ILLLI-AKGYSNQEIASAS-HITIKTVKTHVSNI 68 (91)
T ss_dssp HHHHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 45565 5788889999998 88999999865533
Done!