Query 024480
Match_columns 267
No_of_seqs 186 out of 1273
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14558 pyrH uridylate kinase 100.0 3.8E-45 8.3E-50 316.9 27.2 229 24-256 1-230 (231)
2 PRK00358 pyrH uridylate kinase 100.0 8E-45 1.7E-49 315.0 27.3 231 24-255 1-231 (231)
3 PRK14556 pyrH uridylate kinase 100.0 1E-43 2.3E-48 307.2 26.3 235 22-256 14-248 (249)
4 COG0528 PyrH Uridylate kinase 100.0 1.7E-43 3.6E-48 298.7 26.4 234 21-255 3-237 (238)
5 cd04239 AAK_UMPK-like AAK_UMPK 100.0 1.7E-43 3.6E-48 306.4 25.8 229 25-255 1-229 (229)
6 TIGR02075 pyrH_bact uridylate 100.0 3.7E-43 8.1E-48 304.8 26.4 232 23-255 1-233 (233)
7 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 5.6E-43 1.2E-47 303.3 24.6 231 24-255 1-231 (231)
8 PRK14557 pyrH uridylate kinase 100.0 2.6E-41 5.7E-46 294.5 26.3 240 22-262 3-244 (247)
9 COG0263 ProB Glutamate 5-kinas 100.0 2.9E-41 6.3E-46 299.1 24.8 233 20-258 3-261 (369)
10 PRK12314 gamma-glutamyl kinase 100.0 2.8E-40 6E-45 291.7 24.9 235 19-257 5-265 (266)
11 PRK13402 gamma-glutamyl kinase 100.0 7.4E-39 1.6E-43 293.0 26.3 236 22-260 4-261 (368)
12 PTZ00489 glutamate 5-kinase; P 100.0 2.5E-38 5.3E-43 278.0 24.9 233 17-257 2-260 (264)
13 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 3.1E-38 6.8E-43 280.6 24.7 230 22-255 7-284 (284)
14 PRK05429 gamma-glutamyl kinase 100.0 5.3E-38 1.1E-42 289.1 26.0 236 19-260 4-265 (372)
15 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 1.8E-37 3.8E-42 272.1 25.0 224 25-255 1-251 (251)
16 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 6E-37 1.3E-41 264.0 22.9 211 25-255 1-221 (221)
17 TIGR01027 proB glutamate 5-kin 100.0 1E-36 2.3E-41 279.5 25.8 231 24-260 1-257 (363)
18 TIGR02076 pyrH_arch uridylate 100.0 2.5E-36 5.4E-41 260.1 23.4 211 26-255 1-221 (221)
19 cd04241 AAK_FomA-like AAK_FomA 100.0 6.5E-37 1.4E-41 268.7 19.3 222 25-254 1-252 (252)
20 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 9.3E-36 2E-40 261.8 25.0 226 13-255 20-262 (262)
21 cd02115 AAK Amino Acid Kinases 100.0 2.2E-36 4.7E-41 264.1 20.2 220 27-254 1-248 (248)
22 COG1608 Predicted archaeal kin 100.0 3.6E-36 7.9E-41 254.0 19.7 224 26-255 3-251 (252)
23 cd04234 AAK_AK AAK_AK: Amino A 100.0 2.4E-35 5.2E-40 254.9 22.8 204 25-255 1-227 (227)
24 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 2.4E-35 5.1E-40 256.9 22.9 214 25-255 1-239 (239)
25 cd04246 AAK_AK-DapG-like AAK_A 100.0 3.3E-35 7.3E-40 256.0 22.9 214 25-255 1-239 (239)
26 COG0527 LysC Aspartokinases [A 100.0 6.6E-35 1.4E-39 272.6 22.8 220 24-259 2-292 (447)
27 PRK08841 aspartate kinase; Val 100.0 1.4E-34 3E-39 267.8 24.6 218 23-257 1-243 (392)
28 KOG1154 Gamma-glutamyl kinase 100.0 5.2E-35 1.1E-39 245.0 19.0 239 18-259 4-278 (285)
29 TIGR00656 asp_kin_monofn aspar 100.0 6.9E-34 1.5E-38 265.1 23.7 216 25-257 2-244 (401)
30 cd04244 AAK_AK-LysC-like AAK_A 100.0 2.3E-33 4.9E-38 251.2 22.0 214 25-255 1-298 (298)
31 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 5.5E-33 1.2E-37 242.7 23.2 214 25-255 1-244 (244)
32 PRK08210 aspartate kinase I; R 100.0 6E-33 1.3E-37 258.8 22.9 218 23-257 1-248 (403)
33 PLN02512 acetylglutamate kinas 100.0 1.2E-32 2.7E-37 247.8 23.2 233 13-256 35-309 (309)
34 TIGR01092 P5CS delta l-pyrroli 100.0 1.3E-32 2.8E-37 271.8 25.2 232 22-257 6-276 (715)
35 PRK06635 aspartate kinase; Rev 100.0 8.6E-33 1.9E-37 257.9 22.3 218 23-257 1-243 (404)
36 PRK14058 acetylglutamate/acety 100.0 9.4E-33 2E-37 244.3 21.3 215 25-256 1-267 (268)
37 PRK07431 aspartate kinase; Pro 100.0 1.8E-32 4E-37 266.6 23.4 218 23-258 1-246 (587)
38 CHL00202 argB acetylglutamate 100.0 4.7E-32 1E-36 241.6 23.2 226 19-255 19-283 (284)
39 PRK00942 acetylglutamate kinas 100.0 2.6E-32 5.6E-37 243.4 21.6 225 19-257 19-283 (283)
40 COG0548 ArgB Acetylglutamate k 100.0 5.7E-32 1.2E-36 234.8 22.6 222 22-255 1-264 (265)
41 PRK12353 putative amino acid k 100.0 5.2E-32 1.1E-36 243.7 23.1 228 22-256 1-314 (314)
42 PLN02418 delta-1-pyrroline-5-c 100.0 4.7E-32 1E-36 267.5 24.4 232 21-256 13-283 (718)
43 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 6E-32 1.3E-36 241.3 21.9 215 25-255 1-295 (295)
44 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 4E-32 8.6E-37 241.7 20.5 225 19-254 10-279 (279)
45 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 1.2E-31 2.6E-36 238.3 22.4 212 25-255 1-288 (288)
46 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 1.5E-31 3.3E-36 238.7 22.0 214 25-255 1-294 (294)
47 TIGR00657 asp_kinases aspartat 100.0 2.7E-31 5.9E-36 250.3 23.5 217 25-257 2-284 (441)
48 cd04243 AAK_AK-HSDH-like AAK_A 100.0 4.2E-31 9.2E-36 235.7 21.6 213 25-255 1-293 (293)
49 PRK06291 aspartate kinase; Pro 100.0 5E-31 1.1E-35 249.7 22.9 217 25-257 2-304 (465)
50 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 7.4E-31 1.6E-35 233.6 21.8 212 25-255 1-292 (292)
51 PRK08373 aspartate kinase; Val 100.0 1.2E-30 2.6E-35 236.4 22.6 217 21-258 1-281 (341)
52 cd04238 AAK_NAGK-like AAK_NAGK 100.0 4.1E-31 8.9E-36 232.5 17.9 215 26-254 1-256 (256)
53 cd04235 AAK_CK AAK_CK: Carbama 100.0 3.9E-30 8.4E-35 229.3 22.6 224 25-255 1-308 (308)
54 TIGR00746 arcC carbamate kinas 100.0 6.5E-30 1.4E-34 228.9 24.0 224 24-255 1-309 (310)
55 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 3.4E-30 7.4E-35 230.4 21.9 157 91-256 125-305 (306)
56 PRK09084 aspartate kinase III; 100.0 3E-30 6.5E-35 243.1 22.0 213 25-257 1-290 (448)
57 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 2.9E-30 6.2E-35 226.6 19.0 214 26-254 1-252 (252)
58 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 3.5E-30 7.7E-35 226.5 18.3 206 26-254 1-257 (257)
59 PRK09034 aspartate kinase; Rev 100.0 1.2E-29 2.7E-34 239.4 22.5 214 25-257 1-290 (454)
60 PRK05925 aspartate kinase; Pro 100.0 1E-29 2.2E-34 238.1 21.2 215 23-257 1-281 (440)
61 cd04240 AAK_UC AAK_UC: Unchara 100.0 7.7E-30 1.7E-34 216.8 17.1 192 27-254 1-203 (203)
62 PF00696 AA_kinase: Amino acid 100.0 1.2E-29 2.6E-34 220.8 18.4 202 24-234 1-242 (242)
63 PLN02551 aspartokinase 100.0 3.1E-29 6.8E-34 238.9 22.4 219 21-257 49-349 (521)
64 TIGR02078 AspKin_pair Pyrococc 100.0 1.2E-28 2.6E-33 222.2 20.0 209 25-258 1-272 (327)
65 PRK12686 carbamate kinase; Rev 100.0 2.8E-28 6.1E-33 217.5 21.4 226 23-255 2-311 (312)
66 PRK09466 metL bifunctional asp 100.0 1.4E-28 3E-33 244.9 21.0 216 23-256 10-300 (810)
67 PRK12454 carbamate kinase-like 100.0 1.1E-27 2.3E-32 213.4 23.5 227 23-256 2-313 (313)
68 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 9.8E-28 2.1E-32 213.3 21.8 220 19-254 14-280 (280)
69 TIGR00761 argB acetylglutamate 100.0 5.3E-28 1.1E-32 209.6 17.9 193 25-232 1-231 (231)
70 TIGR01890 N-Ac-Glu-synth amino 100.0 8.2E-28 1.8E-32 226.0 20.0 224 19-258 13-281 (429)
71 PRK08961 bifunctional aspartat 100.0 1.1E-27 2.3E-32 241.7 20.0 219 23-257 7-306 (861)
72 PRK09436 thrA bifunctional asp 100.0 2.5E-27 5.5E-32 237.1 20.9 216 25-257 1-298 (819)
73 PRK12352 putative carbamate ki 100.0 1.9E-26 4.1E-31 206.8 23.9 226 24-256 3-315 (316)
74 PRK05279 N-acetylglutamate syn 100.0 7.6E-27 1.6E-31 220.2 21.7 223 19-257 21-292 (441)
75 PRK12354 carbamate kinase; Rev 99.9 2.8E-26 6E-31 203.9 20.8 227 25-259 2-303 (307)
76 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 1.5E-26 3.3E-31 203.5 18.4 208 23-254 35-271 (271)
77 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 4.3E-26 9.4E-31 199.6 20.9 210 26-254 1-248 (248)
78 cd04248 AAK_AK-Ectoine AAK_AK- 99.9 3E-25 6.5E-30 196.6 18.4 150 96-255 138-304 (304)
79 PRK09411 carbamate kinase; Rev 99.9 8.2E-25 1.8E-29 193.0 21.0 223 24-255 2-296 (297)
80 PRK09181 aspartate kinase; Val 99.9 4.6E-25 1E-29 208.4 20.5 156 92-257 140-312 (475)
81 PLN02825 amino-acid N-acetyltr 99.9 2.1E-23 4.5E-28 197.9 21.5 225 19-258 13-366 (515)
82 PRK04531 acetylglutamate kinas 99.9 2.2E-23 4.7E-28 192.9 19.9 194 23-259 36-252 (398)
83 KOG0456 Aspartate kinase [Amin 99.9 2.4E-23 5.3E-28 185.9 13.0 165 87-260 188-379 (559)
84 COG2054 Uncharacterized archae 99.9 9.3E-22 2E-26 159.4 17.5 198 27-257 3-211 (212)
85 COG0549 ArcC Carbamate kinase 99.9 6.8E-21 1.5E-25 164.8 19.8 227 24-256 1-312 (312)
86 KOG2436 Acetylglutamate kinase 98.4 2.3E-06 5.1E-11 80.0 11.8 167 24-206 96-297 (520)
87 COG1778 Low specificity phosph 72.1 4.8 0.0001 32.8 3.4 57 177-242 10-66 (170)
88 TIGR01689 EcbF-BcbF capsule bi 66.7 12 0.00027 29.2 4.6 47 23-70 1-48 (126)
89 TIGR02726 phenyl_P_delta pheny 61.2 20 0.00044 29.3 5.2 60 178-248 10-71 (169)
90 PRK03669 mannosyl-3-phosphogly 59.9 21 0.00045 31.3 5.4 53 174-245 6-58 (271)
91 PRK01158 phosphoglycolate phos 56.7 18 0.00038 30.5 4.3 43 22-70 2-44 (230)
92 TIGR01664 DNA-3'-Pase DNA 3'-p 55.3 34 0.00073 27.8 5.5 55 17-71 7-67 (166)
93 PRK10513 sugar phosphate phosp 54.2 18 0.00038 31.4 4.0 44 21-70 1-44 (270)
94 PRK10530 pyridoxal phosphate ( 54.1 20 0.00043 31.0 4.3 44 21-70 1-44 (272)
95 PTZ00174 phosphomannomutase; P 54.0 17 0.00037 31.4 3.8 44 21-70 3-46 (247)
96 TIGR01670 YrbI-phosphatas 3-de 52.7 34 0.00075 27.2 5.2 13 177-189 3-15 (154)
97 PRK10530 pyridoxal phosphate ( 49.6 44 0.00096 28.8 5.8 50 177-245 5-54 (272)
98 PRK15126 thiamin pyrimidine py 46.6 47 0.001 28.8 5.5 51 177-246 4-54 (272)
99 TIGR01684 viral_ppase viral ph 46.5 51 0.0011 29.8 5.6 50 21-73 124-173 (301)
100 PHA03398 viral phosphatase sup 43.9 51 0.0011 29.8 5.2 47 22-71 127-173 (303)
101 PRK10976 putative hydrolase; P 43.4 68 0.0015 27.6 6.0 50 177-245 4-53 (266)
102 PF03437 BtpA: BtpA family; I 43.0 50 0.0011 29.1 5.0 92 157-258 122-234 (254)
103 COG2875 CobM Precorrin-4 methy 42.6 52 0.0011 28.7 4.8 40 47-86 60-104 (254)
104 COG0561 Cof Predicted hydrolas 41.9 35 0.00075 29.5 3.9 44 21-70 1-44 (264)
105 PRK00192 mannosyl-3-phosphogly 40.6 40 0.00087 29.5 4.1 45 21-71 2-46 (273)
106 PRK10187 trehalose-6-phosphate 40.3 55 0.0012 28.7 4.9 58 175-246 14-72 (266)
107 TIGR01486 HAD-SF-IIB-MPGP mann 40.1 52 0.0011 28.4 4.7 51 177-246 1-51 (256)
108 TIGR02461 osmo_MPG_phos mannos 38.8 61 0.0013 27.6 4.9 29 217-245 21-49 (225)
109 PF11760 CbiG_N: Cobalamin syn 37.9 46 0.001 24.1 3.3 29 144-176 50-78 (84)
110 PRK10513 sugar phosphate phosp 37.8 82 0.0018 27.2 5.6 50 177-245 5-54 (270)
111 PLN03017 trehalose-phosphatase 37.7 1.1E+02 0.0024 28.5 6.5 66 162-245 98-166 (366)
112 PRK09484 3-deoxy-D-manno-octul 37.6 34 0.00075 28.1 3.0 13 176-188 22-34 (183)
113 TIGR00099 Cof-subfamily Cof su 37.5 70 0.0015 27.4 5.1 30 217-246 22-51 (256)
114 PF00994 MoCF_biosynth: Probab 37.5 2E+02 0.0042 22.4 7.7 67 102-173 18-84 (144)
115 PRK01158 phosphoglycolate phos 37.4 61 0.0013 27.1 4.6 49 177-244 5-53 (230)
116 PRK05265 pyridoxine 5'-phospha 36.6 1.4E+02 0.0029 26.1 6.5 84 137-244 118-201 (239)
117 TIGR01487 SPP-like sucrose-pho 36.1 94 0.002 25.8 5.6 50 177-245 3-52 (215)
118 PF01872 RibD_C: RibD C-termin 35.6 47 0.001 27.5 3.6 30 51-80 123-152 (200)
119 PLN02887 hydrolase family prot 35.6 48 0.0011 32.8 4.1 48 17-70 302-349 (580)
120 COG1058 CinA Predicted nucleot 35.4 2.5E+02 0.0055 24.7 8.1 68 102-174 22-89 (255)
121 PTZ00174 phosphomannomutase; P 34.6 66 0.0014 27.7 4.4 51 177-246 7-57 (247)
122 TIGR01482 SPP-subfamily Sucros 34.2 83 0.0018 26.2 4.9 28 218-245 22-49 (225)
123 PRK15126 thiamin pyrimidine py 33.2 57 0.0012 28.3 3.9 42 23-70 2-43 (272)
124 COG2044 Predicted peroxiredoxi 32.6 1.1E+02 0.0023 23.8 4.8 64 158-234 19-82 (120)
125 PRK10976 putative hydrolase; P 32.2 60 0.0013 28.0 3.8 42 23-70 2-43 (266)
126 COG1058 CinA Predicted nucleot 32.2 33 0.00072 30.2 2.1 28 47-75 46-74 (255)
127 COG0561 Cof Predicted hydrolas 31.3 1.2E+02 0.0026 26.1 5.6 52 177-247 5-56 (264)
128 TIGR01487 SPP-like sucrose-pho 30.0 87 0.0019 26.0 4.4 41 24-70 2-42 (215)
129 smart00463 SMR Small MutS-rela 28.9 1.2E+02 0.0026 21.0 4.3 28 46-73 13-42 (80)
130 PF11305 DUF3107: Protein of u 28.9 69 0.0015 22.6 2.9 27 158-184 20-47 (74)
131 TIGR01457 HAD-SF-IIA-hyp2 HAD- 28.9 91 0.002 26.9 4.4 13 177-189 3-15 (249)
132 PF10686 DUF2493: Protein of u 28.6 1.4E+02 0.003 20.7 4.4 36 26-71 5-40 (71)
133 TIGR01484 HAD-SF-IIB HAD-super 27.4 1.3E+02 0.0028 24.6 4.9 52 177-246 1-52 (204)
134 PRK12702 mannosyl-3-phosphogly 27.2 89 0.0019 28.3 4.0 42 23-70 1-42 (302)
135 PRK12702 mannosyl-3-phosphogly 26.6 1.1E+02 0.0024 27.7 4.5 28 218-245 25-52 (302)
136 COG1979 Uncharacterized oxidor 26.5 1.6E+02 0.0035 27.1 5.5 62 15-77 21-100 (384)
137 PF12000 Glyco_trans_4_3: Gkyc 26.5 79 0.0017 26.1 3.3 24 50-73 52-78 (171)
138 COG0560 SerB Phosphoserine pho 26.4 1.2E+02 0.0027 25.6 4.6 19 55-73 86-104 (212)
139 cd00885 cinA Competence-damage 26.3 3.6E+02 0.0077 21.9 7.8 68 102-174 20-87 (170)
140 PRK14501 putative bifunctional 26.3 2.2E+02 0.0048 28.9 7.2 72 162-247 479-551 (726)
141 PRK01215 competence damage-ind 25.9 4.3E+02 0.0092 23.3 8.1 68 102-174 24-91 (264)
142 PRK03673 hypothetical protein; 25.9 4.1E+02 0.0089 25.0 8.4 68 102-174 22-89 (396)
143 TIGR00559 pdxJ pyridoxine 5'-p 25.6 2.7E+02 0.0059 24.3 6.5 73 156-245 128-200 (237)
144 PF08282 Hydrolase_3: haloacid 24.7 1.1E+02 0.0025 25.2 4.2 30 217-246 21-50 (254)
145 PRK00192 mannosyl-3-phosphogly 24.6 1.2E+02 0.0026 26.4 4.4 50 177-245 6-55 (273)
146 COG1915 Uncharacterized conser 23.8 2.3E+02 0.0049 25.9 5.8 42 25-69 166-207 (415)
147 COG1576 Uncharacterized conser 23.7 2E+02 0.0043 23.4 5.0 23 49-71 83-105 (155)
148 PLN02151 trehalose-phosphatase 23.3 2.1E+02 0.0045 26.5 5.8 67 165-246 88-154 (354)
149 PRK10628 LigB family dioxygena 23.1 1E+02 0.0023 27.0 3.6 36 43-81 122-157 (246)
150 PF07521 RMMBL: RNA-metabolisi 23.1 79 0.0017 19.5 2.1 22 44-70 19-40 (43)
151 TIGR02463 MPGP_rel mannosyl-3- 22.7 1.1E+02 0.0024 25.5 3.6 40 26-71 2-41 (221)
152 PF02590 SPOUT_MTase: Predicte 22.6 1.6E+02 0.0035 23.7 4.4 36 25-71 70-106 (155)
153 TIGR01458 HAD-SF-IIA-hyp3 HAD- 22.4 2E+02 0.0044 24.9 5.4 12 177-188 3-14 (257)
154 TIGR01452 PGP_euk phosphoglyco 21.9 2.1E+02 0.0046 25.0 5.5 13 177-189 4-16 (279)
155 PRK03669 mannosyl-3-phosphogly 21.2 1.3E+02 0.0029 26.1 4.0 42 23-70 7-48 (271)
156 cd00003 PNPsynthase Pyridoxine 20.7 3.6E+02 0.0078 23.5 6.3 73 156-245 128-200 (234)
157 PRK14569 D-alanyl-alanine synt 20.2 2.8E+02 0.0061 24.5 5.9 45 21-72 1-45 (296)
158 TIGR00177 molyb_syn molybdenum 20.1 4.3E+02 0.0093 20.6 8.1 65 102-171 28-92 (144)
159 PRK11423 methylmalonyl-CoA dec 20.1 3.4E+02 0.0074 23.5 6.4 38 41-78 26-66 (261)
No 1
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=3.8e-45 Score=316.95 Aligned_cols=229 Identities=43% Similarity=0.742 Sum_probs=199.3
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||+|||+|+++++++++.+.+++++++|+++++.|+++|||||||++++++... +++....+.++..++++|+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~ 77 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINA 77 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHH
Confidence 5799999999999886667999999999999999999999999999999998776532 3555567888888888998
Q ss_pred HHHHHHHHHcCCCeeEeecccc-ccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 104 IFLQATMESIGIPTRVQTAFRM-SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~-~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
.++.++|.++|+++.++..+.. .++ .++..+.+..+++.|.|||++|+.+.+++++|++|+++|..++|++|++||||
T Consensus 78 ~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 78 LYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHcCCCeEEeccccccchh-hhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 7778999999999876543211 111 11122446688999999999999888899999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
||||++||+.+|+|+++++|+++|+.+++...||+.|+++|.++|++++|+|+++|+++.+++.|+..||+|.+
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999975
No 2
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=8e-45 Score=314.96 Aligned_cols=231 Identities=64% Similarity=1.032 Sum_probs=201.7
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||||||+++++.+++++.+.+++++++|+++.+.|+++|||||||++++++... ..+++....++++++++++|+
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHH
Confidence 4789999999999765567899999999999999999999999999999999887642 235655567888899999999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.+++++|.++|+++..+++........++..+.+.++|++|.|||++++.+.++++||++|+++|.+|+|++|+|+||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 88889999999998766654443333344445567899999999999877777899999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||++||+.+|++++|++|+++|+.+.|...||+.+++.|.++|++++|+|+++|+++.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777777889999999999999999999999999999999998999984
No 3
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1e-43 Score=307.23 Aligned_cols=235 Identities=42% Similarity=0.685 Sum_probs=213.4
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|+|++|++|..++++.++.+.+.+++++|+++.+.|+++.||.|||.++++.......|+++...|+++++++++
T Consensus 14 ~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~i 93 (249)
T PRK14556 14 KLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMI 93 (249)
T ss_pred hhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHH
Confidence 47899999999999876556789999999999999999999999999999999998543211357888899999999999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|+.+++.+|.+.|+++..+++.....+.++|..+++.+.++.|.|+|+.|+.|.++++||++|+++|.+++||.|+++||
T Consensus 94 Nal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~Td 173 (249)
T PRK14556 94 NALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATT 173 (249)
T ss_pred HHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999887777777776677788999999999999888999999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+++|+|++++++++.|..+.+...|+..|++.+.++|++++|+|+++|++|.+++.|+.+||+|.-
T Consensus 174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred CCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 999999999999999999999998877666678899999999999999999999999999999999999999963
No 4
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=298.66 Aligned_cols=234 Identities=60% Similarity=0.960 Sum_probs=218.9
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHH
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV 100 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (267)
++++++|+|+||++|..++++.+|.+.+.+++++|+++.+.|.++.||.|||.++|++.... .|+++...|++++++++
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTv 81 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATV 81 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHH
Confidence 56789999999999998766779999999999999999999999999999999999988765 48888899999999999
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
+|+.+++.+|...|+++..++......+.++|..++..+.|+.|.|+|+.|.+++|+.++|+.|++.|.+++||.|+..|
T Consensus 82 mNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 82 MNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred HHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 99999999999999999998887776666777777888999999999999988999999999999999999999999999
Q ss_pred c-cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 181 N-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 181 D-VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+ |||||++||+++|+|+.++++||.|+.+.+...|++.|+..+.+++++++++|+++++++.+++.|++.||.|.
T Consensus 162 n~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred cCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 5 99999999999999999999999999988899999999999999999999999999999999999999999986
No 5
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=1.7e-43 Score=306.35 Aligned_cols=229 Identities=62% Similarity=0.991 Sum_probs=199.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI 104 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 104 (267)
++|||||||++++++. +++.+.+++++++|+++++.|+++|||||||+++.++.... +++++...+++++.++++|+.
T Consensus 1 ~iViKiGGs~l~~~~~-~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAA-RGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred CEEEEECcceecCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhh-cCCChhhHHHHHHHHHHHHHH
Confidence 5899999999998764 78899999999999999989999999999999877765433 345555678889999999999
Q ss_pred HHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 105 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 105 l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
++..+|.++|+++..+++.+...+...+..+.+.++++.|.|||++|+.|.++++||++|+++|..|+|++|+|+|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99899999999998766665443322222234668899999999999988888999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
||++||+.+|++++|++|+++|+.++..+.+|+.+++.+.++|++++|+|+++|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999998877667789999999999999999999999999999999998999884
No 6
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=3.7e-43 Score=304.80 Aligned_cols=232 Identities=56% Similarity=0.960 Sum_probs=201.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
++++|||||||+|+++.+++++.+.+++++++|+++...|+++|||||||++..++. +..++++..+.+++++++++++
T Consensus 1 ~~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CCEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHH
Confidence 368999999999998445678999999999999999988899999999999876654 3334565556788999999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 181 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD- 181 (267)
..++.++|.++|+++.++++.+.......+..+.+.+++++|+|||++++.|.++++||++|+++|..|+||+|+|+||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9888899999999998877665442222333345668899999999999878889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||||++||+.+|+++++++|+++|+.+.+...+|+.+++.|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998777777889999999999999999999999999999999999999984
No 7
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=5.6e-43 Score=303.34 Aligned_cols=231 Identities=69% Similarity=1.077 Sum_probs=198.1
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
+++|||||||++++|++++++.+.+++++++|+++...|+++|||||||++.++.... .++....+.++++++++++|+
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~-~~~~~~~~~d~~g~~~~~~n~ 79 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAA-EAGMDRATADYMGMLATVINA 79 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhh-hcCCCchhhhHHHHHHHHHHH
Confidence 5799999999999987778999999999999999988889999999999885342222 234544456778888999999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.++..+|.++|+++.++++.+...+...+..+.+.++++.|+|||++|+.|.+.+++|++|+++|.+|+|++|+++||||
T Consensus 80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd 159 (231)
T cd04254 80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88888999999999877766543221111123456889999999999987888899999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||++||+.+|+++++++|+++|+.+.+...||+++++.|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus 160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777778899999999999999999999999999999999998999984
No 8
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=2.6e-41 Score=294.52 Aligned_cols=240 Identities=43% Similarity=0.731 Sum_probs=200.4
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++||||||+++.+++.+.++.+.+++++++|+++.+.|++++||||||.+.++. .++.+++++...|.++++++++
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~l 81 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTII 81 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHH
Confidence 367999999999998766567889999999999999999999999999999876543 2333456666789999999999
Q ss_pred HHHHHHHHHHHc-CCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEe-
Q 024480 102 NAIFLQATMESI-GIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA- 179 (267)
Q Consensus 102 ~~~l~~~~l~~~-Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~l- 179 (267)
|+.++..+|... +..+..++.........++...++.+.|++|.|||++|+.|.+++++|++|+++|.+++||.|+++
T Consensus 82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~t 161 (247)
T PRK14557 82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 161 (247)
T ss_pred HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEec
Confidence 999998888874 665543443322222233333446677899999999999889999999999999999999999999
Q ss_pred eccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 180 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 180 TDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
|||||||++||+.+|+|++|++|++.|+...+...|++.|++.|.++|++++|+|+++|+.|.++++|+.+||+|.+..+
T Consensus 162 tdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 162 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred CCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 49999999999999999999999998875445557889999999999999999999999999999999999999998776
Q ss_pred Ccc
Q 024480 260 STV 262 (267)
Q Consensus 260 ~~~ 262 (267)
...
T Consensus 242 ~~~ 244 (247)
T PRK14557 242 LLV 244 (247)
T ss_pred ccc
Confidence 543
No 9
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=299.11 Aligned_cols=233 Identities=25% Similarity=0.396 Sum_probs=199.9
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChH--HHHHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSA--DYIGML 97 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~--~~~~~~ 97 (267)
..+.+++|||+|.|+|++. .+.++.+.+..++++|++|++.|+++|||+ +|+++.++..++ ++.++. ...|++
T Consensus 3 ~~~~~riVvKiGSs~Lt~~-~g~l~~~~l~~l~~~ia~L~~~G~eVilVS-SGAiaaG~~~Lg---~~~rp~~l~~kQA~ 77 (369)
T COG0263 3 LSSARRIVVKIGSSSLTDG-TGGLDRSKLEELVRQVAALHKAGHEVVLVS-SGAIAAGRTRLG---LPKRPKTLAEKQAA 77 (369)
T ss_pred CCcceEEEEEECcceeeCC-CCCcCHHHHHHHHHHHHHHHhCCCEEEEEc-cchhhhChhhcC---CCCCCcchHHHHHH
Confidence 4567899999999999987 457899999999999999999999999997 789998988876 655554 456777
Q ss_pred HHHHHHHHH---HHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHH
Q 024480 98 ATVMNAIFL---QATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAA 165 (267)
Q Consensus 98 ~~~~~~~l~---~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa 165 (267)
+++.+..|+ .+.|..+|+++ .|.+++.+|+.+ +|.|. .+..+|+.|.|||+|.+ .|..|+|||.+|+
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v-~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA 156 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKV-GQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSA 156 (369)
T ss_pred HHhCHHHHHHHHHHHHHhcCCee-eEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHH
Confidence 777776654 56699999986 488899888864 35553 35689999999999986 3567999999999
Q ss_pred HHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEEE
Q 024480 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVF 233 (267)
Q Consensus 166 ~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ 233 (267)
++|..++||.|+++||+||+|++||+.+|+|++|+++.. .|+.. +|+|+| |+.||+.|.++|++++|+
T Consensus 157 ~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~ 236 (369)
T COG0263 157 LVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIA 236 (369)
T ss_pred HHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999999999999999999999998864 23332 478999 999999999999999999
Q ss_pred cCCCCCcHHHHhcCCCcceEEecCC
Q 024480 234 NLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 234 ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+|.+|+.+.+++.++..||+|.+..
T Consensus 237 ~g~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 237 SGSKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred cCCCcchHHHHHhCCCCccEEecCC
Confidence 9999999999999999999999655
No 10
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=2.8e-40 Score=291.71 Aligned_cols=235 Identities=21% Similarity=0.267 Sum_probs=182.9
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE-ECCchHHhhhHHhcCCCCCCCh--HHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSS--ADYIG 95 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViV-hGgG~~~~~~~~~~~~~l~~~~--~~~~~ 95 (267)
...+++++|+|||||++++++ ..++.+.+++++++|+++++.|+++||| ||++++++.+ ++.+..+... .+.+.
T Consensus 5 ~~~~~~~iViK~Ggs~l~~~~-~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~--l~~~~~~~~~~~~~a~a 81 (266)
T PRK12314 5 QLENAKRIVIKVGSSTLSYEN-GKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTK--LKLDKRPTSLAEKQALA 81 (266)
T ss_pred hHhhCCEEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccccee--eccccCCCCHHHHHHHH
Confidence 344578999999999999765 3789999999999999999999999987 5557776543 3322222111 12223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch--HHH--HHHHHHhhCCCEEEEeCC-----CCC--CCCCcHHHH
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAG-----TGN--PFFTTDTAA 164 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~~--~~l~~ll~~g~iPIi~g~-----~g~--~~~~sD~~A 164 (267)
+.++.....++.++|.++|+++. |...+.+++..+ +.+ ..+.++++.|+|||++++ .+. .+++||++|
T Consensus 82 a~Gq~~l~~~~~~~~~~~g~~~~-q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~A 160 (266)
T PRK12314 82 AVGQPELMSLYSKFFAEYGIVVA-QILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLS 160 (266)
T ss_pred HHhHHHHHHHHHHHHHHcCCeEE-EEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHH
Confidence 34455555667889999999864 556666666533 222 335578899999999963 222 278999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhhc--------CCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK--------DLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|.+|+|++|+|+|||||||++||+.+|++++|++|++ .|..+. ++|+| |++|++.|.++|++++|
T Consensus 161 a~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I 240 (266)
T PRK12314 161 AIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVL 240 (266)
T ss_pred HHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999975 333221 46778 99999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+||++|+.+.++++|+..||+|.+.
T Consensus 241 ~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 241 ANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred EcCCCchHHHHHHcCCCCceEEccC
Confidence 9999999999999999899999764
No 11
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=7.4e-39 Score=293.04 Aligned_cols=236 Identities=20% Similarity=0.323 Sum_probs=184.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCC-CCCCChHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNS-GLDRSSADYIGMLATV 100 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~-~l~~~~~~~~~~~~~~ 100 (267)
.++++||||||+++++.+ +.++.+.+..++++|+++++.|+++||||||| ++.+...++.. +.+....+.+...++.
T Consensus 4 ~~kriVIKiGgs~L~~~~-~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~~~~~~~~qalaavGq~ 81 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHH-QGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFIDRPSVPEKQAMAAAGQG 81 (368)
T ss_pred CCcEEEEEEchhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCCCCCccHHHHHHHhhHH
Confidence 357999999999998743 47899999999999999999999999999765 55455444311 1111112222233333
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccc--hHH--HHHHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHHhc
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEI 171 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~--~~~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~lA~~l 171 (267)
.....+.++|.++|+++. +...+..++.. .|. ++.+..+|+.|+|||++++ .+..|+|||++|+++|.++
T Consensus 82 ~l~~~~~~~f~~~g~~~a-qvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l 160 (368)
T PRK13402 82 LLMATWSKLFLSHGFPAA-QLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALA 160 (368)
T ss_pred HHHHHHHHHHHHCCCeEE-EEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHh
Confidence 333446788999999986 44556666542 343 3445688999999999963 2467899999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 172 NAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 172 ~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+||.|+|+|||||||++||+.+|++++|++|++ +|+.+ .|+|+| |++|++.|.++|++++|+|++.|+
T Consensus 161 ~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 240 (368)
T PRK13402 161 DADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTAD 240 (368)
T ss_pred CCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCch
Confidence 999999999999999999999999999999986 45443 358899 789999999999999999999999
Q ss_pred cHHHHhcCCCcceEEecCCCC
Q 024480 240 NIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~~~~~~ 260 (267)
.+.+++.|+..||+|.+...+
T Consensus 241 ~l~~~l~g~~~GT~i~~~~~~ 261 (368)
T PRK13402 241 IFNQLLKGQNPGTYFTPEEKP 261 (368)
T ss_pred HHHHHhcCCCCceEEecCCCC
Confidence 999999999999999876554
No 12
>PTZ00489 glutamate 5-kinase; Provisional
Probab=100.00 E-value=2.5e-38 Score=278.02 Aligned_cols=233 Identities=18% Similarity=0.247 Sum_probs=183.6
Q ss_pred CccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHH
Q 024480 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGM 96 (267)
Q Consensus 17 ~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~ 96 (267)
+....+.+++|||+|||++++++ .++...+..++++++++++ ++++|||| +|++++++..++ +........++
T Consensus 2 ~~~~~~~~riVIKlG~Svit~~~--~~~~~~~~~l~~~i~~l~~-~~~vilVs-sGava~g~~~~~---~~~~~~~~~qa 74 (264)
T PTZ00489 2 ADILKSVKRIVVKVGSSILVDNQ--EIAAHRIEALCRFIADLQT-KYEVILVT-SGAVAAGYTKKE---MDKSYVPNKQA 74 (264)
T ss_pred hhhhhcCCEEEEEeccceeeCCC--CcCHHHHHHHHHHHHHHhc-CCeEEEEe-cChHhcChhhcC---CCccccHHHHH
Confidence 33445688999999999999753 4678899999999999986 79999999 566888877554 33333333455
Q ss_pred HHHHHHHHH---HHHHHHHcCCCeeEeeccccccccc--hHHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHH
Q 024480 97 LATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAA 164 (267)
Q Consensus 97 ~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~A 164 (267)
++++.+..| +.+.|.++|+++. |.+.+..++.. .+.+ +.+.++|+.|.|||+++++ +..|+|||.+|
T Consensus 75 ~aaiGq~~L~~~y~~~f~~~~~~~a-qiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lA 153 (264)
T PTZ00489 75 LASMGQPLLMHMYYTELQKHGILCA-QMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLS 153 (264)
T ss_pred HHHhCHHHHHHHHHHHHHhCCCeEE-EeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHH
Confidence 665444333 5677999999985 55566655532 2322 3356899999999999963 33467999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCccc---ccccCHHHHhh-------cCCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEVTS-------KDLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~l---i~~Is~~e~~~-------lg~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|..++||+|+|+|||||||++||+.+|++++ +++++.+++.. .++|+| |++||+.+.++|++++|
T Consensus 154 a~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I 233 (264)
T PTZ00489 154 ALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYL 233 (264)
T ss_pred HHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999987 77888776531 257888 99999999999999999
Q ss_pred EcCCCCCcHHHHhcCC--CcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGE--RVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~--~~GT~I~~~ 257 (267)
+||++|+.|.+++.|+ ..||+|.+.
T Consensus 234 ~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 234 SSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred EeCCCchHHHHHHcCCCCCCceEEeec
Confidence 9999999999999875 379999764
No 13
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00 E-value=3.1e-38 Score=280.56 Aligned_cols=230 Identities=20% Similarity=0.222 Sum_probs=180.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE-ECCchHHhhhHHhcCCCC--------------
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGL-------------- 86 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViV-hGgG~~~~~~~~~~~~~l-------------- 86 (267)
+.+++|||+|||+|++++++.++.+.+.+++++|++|++.|+++||| ||++++++. .++.++.
T Consensus 7 ~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~--~l~~~~~~~~~~~~~~~g~~~ 84 (284)
T cd04256 7 HAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQ--RLRHEILLSSSMRQTLKSGQL 84 (284)
T ss_pred cCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChH--Hhhhccccccchhhhcccccc
Confidence 46899999999999987645799999999999999999999999955 444566544 3432221
Q ss_pred -C-CChHHHHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccchH--H--HHHHHHHhhCCCEEEEeCCC----
Q 024480 87 -D-RSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEPY--I--RRRAVRHLEKGRVVIFAAGT---- 153 (267)
Q Consensus 87 -~-~~~~~~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~~--~--~~~l~~ll~~g~iPIi~g~~---- 153 (267)
. +......+++++..+..| +.+.|..+|+++. |..++..++.++. . ...+..+|+.|+|||+++++
T Consensus 85 ~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 85 KDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred cCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 0 111222456666655544 5667999999875 5566667666432 2 23355789999999999731
Q ss_pred -------C---CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--------CCCcc
Q 024480 154 -------G---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM 215 (267)
Q Consensus 154 -------g---~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--------g~g~m 215 (267)
+ +.++|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++..+..++ ++|+|
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 1 2458999999999999999999999999999999996 689999999998665432 57899
Q ss_pred --hHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 216 --DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 216 --k~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|++|+..+.++|++++|+||++|+.+.+++.|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 8899999999999999999999999999999999999983
No 14
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=5.3e-38 Score=289.09 Aligned_cols=236 Identities=25% Similarity=0.368 Sum_probs=186.1
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh--HHHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGM 96 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~--~~~~~~ 96 (267)
...+++++|||||||++++++ ++++.+.+.+++++|++++++|+++||||| |++++++..++ +...+ ....++
T Consensus 4 ~~~~~~~iVIKiGGs~l~~~~-~~l~~~~i~~la~~I~~l~~~g~~vViV~s-Gai~~g~~~l~---l~~~~~~~~~~qa 78 (372)
T PRK05429 4 ALSDARRIVVKVGSSLLTGGG-GGLDRARIAELARQIAALRAAGHEVVLVSS-GAVAAGRERLG---LPERPKTLAEKQA 78 (372)
T ss_pred chhhCCEEEEEeChhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEcc-cHhhhhHhhcC---CCCCCCchHHHHH
Confidence 334678999999999999863 478999999999999999999999999995 57777665554 33222 222334
Q ss_pred HHHH---HHHHHHHHHHHHcCCCeeEeeccccccccc--hHHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHH
Q 024480 97 LATV---MNAIFLQATMESIGIPTRVQTAFRMSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAA 164 (267)
Q Consensus 97 ~~~~---~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~A 164 (267)
++.. ....++.++|.++|+++. +...+..++.. .|++ ..+..+++.|+|||+++++ +..++|||++|
T Consensus 79 ~aavGq~~L~~~~~~~l~~~gi~~~-qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~A 157 (372)
T PRK05429 79 AAAVGQSRLMQAYEELFARYGITVA-QILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLS 157 (372)
T ss_pred HHHHhHHHHHHHHHHHHHHCCCCEE-EEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHH
Confidence 4433 233356788999999975 43444444432 2444 2345788999999999632 34679999999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhh--------cCCCcc--hHHHHHHHHhCCCcEEE
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVV 232 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I 232 (267)
+++|.+|+|++|+|+|||||||++||+.+|++++|++|++ +|+.+ .++|+| |++|+..+.++|++++|
T Consensus 158 a~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I 237 (372)
T PRK05429 158 ALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVI 237 (372)
T ss_pred HHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999987 44443 257788 88999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
+|+++|+.+.++++|+..||+|.+..+.
T Consensus 238 ~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 265 (372)
T PRK05429 238 ASGREPDVLLRLLAGEAVGTLFLPQEKP 265 (372)
T ss_pred EcCCCccHHHHHhcCCCCCEEEeeCCcc
Confidence 9999999999999999999999976554
No 15
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=1.8e-37 Score=272.10 Aligned_cols=224 Identities=25% Similarity=0.412 Sum_probs=175.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcCCCCCCC--hH---HHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS--SA---DYIGMLA 98 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~~~l~~~--~~---~~~~~~~ 98 (267)
++|||||||++++++. .++.+.+.+++++|++++++|+++|||||| |++++. .++ +... .. +.+...+
T Consensus 1 ~iViK~GGs~i~~~~~-~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~--~~~---~~~~~~~~~~~~~~~~~G 74 (251)
T cd04242 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQ--RLG---LEKRPKTLPEKQALAAVG 74 (251)
T ss_pred CEEEEeCCCeeeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChh--hhc---cCcCCCchhHHHHHHHHh
Confidence 5899999999998754 247899999999999999999999999965 555432 222 2221 11 2222334
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeeccccccccch--HHH--HHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHH
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCA 169 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~~--~~l~~ll~~g~iPIi~g~~-----g~~~~~sD~~Aa~lA~ 169 (267)
+.....+++++|.++|+++. +...+..++... +.+ ..+..+|+.|+|||+++++ +..++|+|++|+++|.
T Consensus 75 q~~l~~~~~~~l~~~Gi~~~-q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~ 153 (251)
T cd04242 75 QSLLMALYEQLFAQYGIKVA-QILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAG 153 (251)
T ss_pred HHHHHHHHHHHHHHcCCeEE-EEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHH
Confidence 44444567789999999975 333444444322 211 2345788999999999732 2467899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccC--HHHHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is--~~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+|+|++|+|+|||||||++||+.+|++++|++|+ ++|+.++ ++++| |++++..+.++|++++|+|+++
T Consensus 154 ~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~ 233 (251)
T cd04242 154 LVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRK 233 (251)
T ss_pred HcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 9999999999999999999999999999999999 8876543 57888 7799999999999999999999
Q ss_pred CCcHHHHhcCCCcceEEe
Q 024480 238 PGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~ 255 (267)
|+.+.++|+|+..||+|.
T Consensus 234 ~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 234 PDVLLDILAGEAVGTLFL 251 (251)
T ss_pred CCHHHHHHcCCCCCeEeC
Confidence 999999999999999984
No 16
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00 E-value=6e-37 Score=263.97 Aligned_cols=211 Identities=30% Similarity=0.508 Sum_probs=176.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|||||||++++++ +.+.+++++++|+++.. ++++|||||||++++.+... ...+++....|+++..++.+|.
T Consensus 1 ~iViKlGGs~l~~~~----~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~ 75 (221)
T cd04253 1 RIVISLGGSVLAPEK----DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNA 75 (221)
T ss_pred CEEEEeccceeCCCC----ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 579999999997542 67899999999998765 78999999999999887543 2234554567888888899999
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.++...+. .|+++.+.+ .+.+.++|+.|.|||++|+. +..++|++|+++|.+|+|++|+++||||
T Consensus 76 ~~~~~~l~-~~~~~~~~~------------~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVd 140 (221)
T cd04253 76 RLLIAALG-DAYPPVPTS------------YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVD 140 (221)
T ss_pred HHHHHHHh-cCCCcCCCC------------HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCC
Confidence 88876666 787654321 12456789999999999974 4579999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc--------CC-CcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l--------g~-g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|||++||+.+|++++|++|+++|+.++ |+ +.+|+.+++++.++|++++|+|+++|+.|.++|+|+.+||+|
T Consensus 141 GVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 141 GVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred eeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999999888764 22 245999999999999999999999999999999999999998
Q ss_pred e
Q 024480 255 G 255 (267)
Q Consensus 255 ~ 255 (267)
.
T Consensus 221 ~ 221 (221)
T cd04253 221 E 221 (221)
T ss_pred C
Confidence 4
No 17
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=100.00 E-value=1e-36 Score=279.52 Aligned_cols=231 Identities=28% Similarity=0.408 Sum_probs=181.5
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh--HHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVM 101 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~ 101 (267)
+++|||||||++++++. .++.+.+.+++++|++++++|+++||||||| .+.++..++ +..++ ....++++...
T Consensus 1 ~riVIKiGgs~l~~~~~-~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~-~~~g~~~lg---~~~~~~~l~~~qa~aa~G 75 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSG-SLDRSHIAELVEQVAALHAAGHEVVIVSSGA-IAAGFEALG---LPERPKTLAEKQALAAVG 75 (363)
T ss_pred CeEEEEeccceEeCCCC-CcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH-HhcCccccC---CCCCccchHHHHHHHHhC
Confidence 47999999999998654 3899999999999999999999999999854 444554443 43332 22234444433
Q ss_pred HH---HHHHHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHH
Q 024480 102 NA---IFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCA 169 (267)
Q Consensus 102 ~~---~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~lA~ 169 (267)
+. .++.+.|.++|+++. +.+.+..++.. .|.|. .+..+|+.|.|||++.+ .+..++|||++|+++|.
T Consensus 76 q~~l~~~~~~~l~~~Gi~~a-qillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~ 154 (363)
T TIGR01027 76 QVRLMQLYEQLFSQYGIKVA-QILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAI 154 (363)
T ss_pred hHHHHHHHHHHHHHcCCeEE-EEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHH
Confidence 33 345678999999974 54555555543 34442 24578899999999953 23457899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccCHH--HHhh--------cCCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~--e~~~--------lg~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+++||+|+|+|||||||++||+.+|++++|++|++. ++.+ .++|+| |++|+..|.+.|++++|+|+++
T Consensus 155 ~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 234 (363)
T TIGR01027 155 LVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSK 234 (363)
T ss_pred HcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 999999999999999999999999999999999863 2221 367889 7889999999999999999999
Q ss_pred CCcHHHHhcCCCcceEEecCCCC
Q 024480 238 PGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
|+.+.++++|+..||+|.+..+.
T Consensus 235 ~~~l~~~l~g~~~GT~i~~~~~~ 257 (363)
T TIGR01027 235 PEKIADALEGAPVGTLFHAQARR 257 (363)
T ss_pred ccHHHHHhcCCCCcEEEeeCCCC
Confidence 99999999999899999876554
No 18
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=100.00 E-value=2.5e-36 Score=260.14 Aligned_cols=211 Identities=30% Similarity=0.485 Sum_probs=176.9
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChHHHHHHHHHHHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAI 104 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 104 (267)
+|||||||++++++ +.+.+++++++|++++++ +++|||||||++++.+... ...++.....+++++.++++|..
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~ 75 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAM 75 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHH
Confidence 58999999999752 688999999999999876 8999999999998776432 21334444678888889999999
Q ss_pred HHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 105 FLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 105 l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
++...|...++++.+.+ .....+.++.|.+||++|+. +..++|++|+++|.+++|++|+++|||||
T Consensus 76 ~l~~ll~~~~~~~~~~~------------~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdG 141 (221)
T TIGR02076 76 LLIAALGDDAYPKVPEN------------FEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDG 141 (221)
T ss_pred HHHHHHHhcCCCCcCCC------------HHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 88877877777765321 11345788899999999974 56899999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc------CCC---cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l------g~g---~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
||++||+.+|++++|++|+++|+.++ +.+ .+|+.+++.+.+.|++++|+|+++|+.+.++++|+..||+|.
T Consensus 142 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 142 VYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred ccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 99999999999999999999887764 234 348999999999999999999999999999999998999984
No 19
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=6.5e-37 Score=268.70 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=173.5
Q ss_pred eEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC--C-----hHHHHHH
Q 024480 25 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--S-----SADYIGM 96 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~--~-----~~~~~~~ 96 (267)
++|||+|||+|++++ ++.++.+.+++++++|++++ |+++|||||||++++.... .+++++ + .....++
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~--~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAK--EYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHH--HhCCCcCCCchhhhhHHHHHH
Confidence 589999999999875 36789999999999999987 8999999999998765322 234431 1 1222333
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEeeccccccc--cch-HHH-HHHHHHhhCCCEEEEeCC---CC---CCCCCcHHHHHH
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--AEP-YIR-RRAVRHLEKGRVVIFAAG---TG---NPFFTTDTAAAL 166 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~--~~~-~~~-~~l~~ll~~g~iPIi~g~---~g---~~~~~sD~~Aa~ 166 (267)
....+|.. +.++|.++|+++.++++.+.... ++. .++ +.+.++|+.|+|||++|+ .+ ..++++|++|+.
T Consensus 77 ~~~~ln~~-~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~ 155 (252)
T cd04241 77 AMLELNSI-VVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVE 155 (252)
T ss_pred HHHHHHHH-HHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHH
Confidence 33456765 45788889999987766543211 010 122 335689999999999984 11 246899999999
Q ss_pred HHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc----------CCCcc--hHHHHHHHHhCCCcEEEEc
Q 024480 167 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVM--DMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 167 lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l----------g~g~m--k~~aa~~a~~~Gi~v~I~n 234 (267)
+|.+|+|++|+|+|||||||++|| |++++|++++++|++++ .+|+| |+++|..+.++|++++|+|
T Consensus 156 lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~ 232 (252)
T cd04241 156 LAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFN 232 (252)
T ss_pred HHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999999999999999999999 78999999998655432 35788 8999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEE
Q 024480 235 LNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I 254 (267)
+++|+.+.++++|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 233 GDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCHHHHHHHHcCCCCceEC
Confidence 99999999999999899986
No 20
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=9.3e-36 Score=261.75 Aligned_cols=226 Identities=21% Similarity=0.309 Sum_probs=176.8
Q ss_pred CCCCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cCCCCCCChH
Q 024480 13 DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSA 91 (267)
Q Consensus 13 ~~~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~~~l~~~~~ 91 (267)
+.|.-..+.--.++|||+|||+|+++ +.+.+++++++|+++++ +++++||||||++++.+... ...+++....
T Consensus 20 ~~~~~~~~~~~~~~ViKiGGSvitdk-----~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~ 93 (262)
T cd04255 20 LAGKEQFRLLPDLNVVKIGGQSIIDR-----GAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVL 93 (262)
T ss_pred cccCCceecCCCcEEEEeccceecCC-----cHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHH
Confidence 33444444555679999999999987 35789999999999876 68999999999998654321 1245655667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCC------------CCCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFT 159 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g------------~~~~~ 159 (267)
+..++.+..+|..++.++|..+|+++... .++ ..+.++|+.|+|||++|+++ .+++|
T Consensus 94 ~~~~~aa~~ln~lv~~~~l~~~g~~~i~~-----~~~------~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~ 162 (262)
T cd04255 94 AKLGASVSEQNAEMLATLLAKHGGSKVGH-----GDL------LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHR 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccc-----ccH------HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCC
Confidence 77888888888887777888889876311 111 24668999999999999732 45789
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--CCCcchHHH--HHHHHhCCCcEEEEcC
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--DLSVMDMTA--ITLCQENNIPVVVFNL 235 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--g~g~mk~~a--a~~a~~~Gi~v~I~ng 235 (267)
+|++|+++|.+++|++|+++|||||||++||+.+|++++|++|++.|+.++ +...|.-.+ ...+.+..++++|+||
T Consensus 163 ~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g 242 (262)
T cd04255 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNG 242 (262)
T ss_pred cHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999999887664 233463322 2222333468999999
Q ss_pred CCCCcHHHHhcCCCcceEEe
Q 024480 236 NQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~ 255 (267)
++|+++.+++.|+.+||+|+
T Consensus 243 ~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 243 LVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred CCCCHHHHHHcCCCCceEeC
Confidence 99999999999999999984
No 21
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=2.2e-36 Score=264.09 Aligned_cols=220 Identities=26% Similarity=0.369 Sum_probs=176.2
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-------CCCCCChHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-------SGLDRSSADYIGMLA 98 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-------~~l~~~~~~~~~~~~ 98 (267)
|||||||++++ .+.+++++++|+.+++.|+++|||||||++.+... ..+. ...+....+.+...+
T Consensus 1 ViKiGGs~l~~-------~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T cd02115 1 VIKFGGSSVSS-------EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG 73 (248)
T ss_pred CEeeCccccCC-------HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH
Confidence 79999999984 46899999999999888999999999998765432 2211 112223334455566
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-------c--hHHHHHHHHHhhCCCEEEEeCCCC--------CCCCCcH
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTD 161 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-------~--~~~~~~l~~ll~~g~iPIi~g~~g--------~~~~~sD 161 (267)
+..+..++.++|.++|+++..+.+.+..... . ....+.+.++|+.+.|||++|+.. .+++++|
T Consensus 74 ~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD 153 (248)
T cd02115 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSD 153 (248)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHH
Confidence 6777778889999999998877665432211 0 111234667899999999999732 2579999
Q ss_pred HHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCC
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
++|+.+|.+|+|++|+|+|||||||++||+.+|++++|++|+++|+.++ |.+.+|++++..+.++|++++|+|+++|
T Consensus 154 ~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~ 233 (248)
T cd02115 154 STAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENP 233 (248)
T ss_pred HHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999888765 4555699999999999999999999999
Q ss_pred CcHHHHhcCCCcceEE
Q 024480 239 GNIAKAIQGERVGTLI 254 (267)
Q Consensus 239 ~~i~~~l~g~~~GT~I 254 (267)
+++ ++|.+++.||+|
T Consensus 234 ~~l-~~~~~~~~GT~I 248 (248)
T cd02115 234 GAL-ALFTPDGGGTLI 248 (248)
T ss_pred ccc-cccCCCCCCCCC
Confidence 999 999999899986
No 22
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=254.00 Aligned_cols=224 Identities=25% Similarity=0.365 Sum_probs=173.0
Q ss_pred EEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCC-------CCChHHHHHHH
Q 024480 26 VLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-------DRSSADYIGML 97 (267)
Q Consensus 26 iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l-------~~~~~~~~~~~ 97 (267)
+|+|+|||+||+|+. ++++.+.+++++.+|++ ..-.++|||||||+|+|.+. .++++ ++.-....+..
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~A--k~~~~~~~~~~~s~~G~~~~~~a 78 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAA--KEFGLEGLKNYLSPLGFSLTHLA 78 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHH--HHhCccccccccCccchHHHHHH
Confidence 899999999999984 79999999999999986 12248999999999987653 33344 11112233344
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeecccc----ccccchHHHHHHHHHhhCCCEEEEeCC----C--CCCCCCcHHHHHHH
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRM----SEVAEPYIRRRAVRHLEKGRVVIFAAG----T--GNPFFTTDTAAALR 167 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~----~~~~~~~~~~~l~~ll~~g~iPIi~g~----~--g~~~~~sD~~Aa~l 167 (267)
...++..+ .++|.+.|+.+++..+.+. +.+...+ -..+.++++.|++|+++|+ . |..++|+|.++.+|
T Consensus 79 m~~L~~~V-~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~-l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~L 156 (252)
T COG1608 79 MLELNSIV-VDALLDAGVRAVSVVPISFSTFNGRILYTY-LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHL 156 (252)
T ss_pred HHHHHHHH-HHHHHhcCCccccccCcceeecCCceeech-HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHH
Confidence 44566654 4688889998853222222 1111111 1345689999999999996 2 34569999999999
Q ss_pred HHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-c----CCCcc--hHHHHHHHHhCCCcEEEEcCCCCCc
Q 024480 168 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-K----DLSVM--DMTAITLCQENNIPVVVFNLNQPGN 240 (267)
Q Consensus 168 A~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-l----g~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~~ 240 (267)
|+.|++|+++|+|||||||+.||.+.|+++.++++....... - -||+| |++++....+++.+++|+||++|++
T Consensus 157 A~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~n 236 (252)
T COG1608 157 AKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPEN 236 (252)
T ss_pred HHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHH
Confidence 999999999999999999999999999999998887643221 1 16788 9999999999999999999999999
Q ss_pred HHHHhcCCCcceEEe
Q 024480 241 IAKAIQGERVGTLIG 255 (267)
Q Consensus 241 i~~~l~g~~~GT~I~ 255 (267)
|.++++|+.+||+|.
T Consensus 237 i~~~l~G~~vGT~I~ 251 (252)
T COG1608 237 IYRALRGENVGTRID 251 (252)
T ss_pred HHHHhcCCCCceEec
Confidence 999999999999986
No 23
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=2.4e-35 Score=254.95 Aligned_cols=204 Identities=26% Similarity=0.320 Sum_probs=166.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc-hHHhhhHHhcCCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGASAAGNSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++|+|||||++. +.+.+++++++|+++ +.|+++||||||+ .+++.+..+. .+..+++.++.
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~ 62 (227)
T cd04234 1 MVVQKFGGTSVA-------SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSA 62 (227)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHH
Confidence 579999999998 456899999999999 8899999999774 4544443221 34457788898
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccc-------hH-H-HHHHHHHhhC-CCEEEEeCCCC---C------CCCCcHHHH
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAE-------PY-I-RRRAVRHLEK-GRVVIFAAGTG---N------PFFTTDTAA 164 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~-------~~-~-~~~l~~ll~~-g~iPIi~g~~g---~------~~~~sD~~A 164 (267)
.++.++|+++|+++..+++.+...... .+ . .+.+.++++. |.|||++||.+ + .+++||++|
T Consensus 63 ~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A 142 (227)
T cd04234 63 RLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSA 142 (227)
T ss_pred HHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHH
Confidence 889999999999998877655422211 11 1 2335578899 99999999622 1 235899999
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcH
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNI 241 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i 241 (267)
+++|.+|+|++|+|||||||||+.||+.+|++++|++++++|+.++ |.+.||+.|+++|.++|++++|.|+++|+
T Consensus 143 ~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~-- 220 (227)
T cd04234 143 AALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE-- 220 (227)
T ss_pred HHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC--
Confidence 9999999999999999999999999999999999999999998775 78899999999999999999999999887
Q ss_pred HHHhcCCCcceEEe
Q 024480 242 AKAIQGERVGTLIG 255 (267)
Q Consensus 242 ~~~l~g~~~GT~I~ 255 (267)
..||+|.
T Consensus 221 -------~~gT~I~ 227 (227)
T cd04234 221 -------APGTLIT 227 (227)
T ss_pred -------CCCCEeC
Confidence 5699984
No 24
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=2.4e-35 Score=256.91 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=169.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc-CCC--CCCChHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATV 100 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~-~~~--l~~~~~~~~~~~~~~ 100 (267)
.+||||||+++. +.+.+++++++|+.+.+.|+++|||||| |.....+.... ... .+....+.+...+++
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~ 73 (239)
T cd04261 1 LIVQKFGGTSVA-------SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQ 73 (239)
T ss_pred CEEEEECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 379999999997 5678999999999999999999999987 55554443221 111 112233444455678
Q ss_pred HHHHHHHHHHHHcCCCeeEeecccccc-----cc--c-hHHH-HHHHHHhhCCCEEEEeCCCC---C------CCCCcHH
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSE-----VA--E-PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDT 162 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~-----~~--~-~~~~-~~l~~ll~~g~iPIi~g~~g---~------~~~~sD~ 162 (267)
+++.++.+.|.++|+++.++++.+... +. + .+.+ +.+.+++++|+|||++|+.+ + .+++||+
T Consensus 74 ~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~ 153 (239)
T cd04261 74 VSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHH
Confidence 888888899999999998877655321 11 1 1223 34567899999999998732 1 2459999
Q ss_pred HHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 163 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 163 ~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |.+.+|++|+++|.++|++++|.|+++|+
T Consensus 154 ~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~ 233 (239)
T cd04261 154 SAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999998874 77788999999999999999999999885
Q ss_pred cHHHHhcCCCcceEEe
Q 024480 240 NIAKAIQGERVGTLIG 255 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~ 255 (267)
.||+|+
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04261 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 599884
No 25
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=3.3e-35 Score=255.96 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=167.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHH-hcCC--CCCCChHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASA-AGNS--GLDRSSADYIGMLATV 100 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~-~~~~--~l~~~~~~~~~~~~~~ 100 (267)
.+||||||+++. +.+.+++++++|+++++.|+++|||||| |...+.+.. .+.. ..+....+.+.+.++.
T Consensus 1 ~iViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~ 73 (239)
T cd04246 1 IIVQKFGGTSVA-------DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQ 73 (239)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHH
Confidence 379999999998 4578999999999999889999999985 555444432 2210 1122234445556677
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccc-----cc---hHHH-HHHHHHhhCCCEEEEeCCCC---C------CCCCcHH
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDT 162 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~---~~~~-~~l~~ll~~g~iPIi~g~~g---~------~~~~sD~ 162 (267)
++..++.+.|+++|+++.++++.+...+ .. ..++ +.+.+++++|.|||++|+.+ . .++++|+
T Consensus 74 ~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~ 153 (239)
T cd04246 74 ISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDT 153 (239)
T ss_pred HHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHH
Confidence 8888888999999999987766543211 11 1123 34567899999999998622 1 2458999
Q ss_pred HHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCC
Q 024480 163 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPG 239 (267)
Q Consensus 163 ~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~ 239 (267)
+|+.+|.+|+|++|+|||||||||++||+.+|+++++++++++|+.++ |...||++|++++.++|+|++|.|+++|+
T Consensus 154 ~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~ 233 (239)
T cd04246 154 TAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN 233 (239)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC
Confidence 999999999999999999999999999999999999999999998774 67788999999999999999999998875
Q ss_pred cHHHHhcCCCcceEEe
Q 024480 240 NIAKAIQGERVGTLIG 255 (267)
Q Consensus 240 ~i~~~l~g~~~GT~I~ 255 (267)
.||+|+
T Consensus 234 ----------~gt~i~ 239 (239)
T cd04246 234 ----------PGTLIT 239 (239)
T ss_pred ----------CCcEeC
Confidence 499884
No 26
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-35 Score=272.62 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=180.7
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhH-Hhc-------------------
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGAS-AAG------------------- 82 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~-~~~------------------- 82 (267)
+++|.||||+++. +.+.++++++.+++..+.|.++|+|++++. ..+.+. .+.
T Consensus 2 ~~iV~KFGGTSva-------~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~ 74 (447)
T COG0527 2 RLIVQKFGGTSVA-------DAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIAS 74 (447)
T ss_pred ceEEEEeCCcccC-------CHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 3899999999998 578999999999999888999999998853 322221 111
Q ss_pred C--CC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch-H-
Q 024480 83 N--SG--------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y- 132 (267)
Q Consensus 83 ~--~~--------------------------l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~-~- 132 (267)
. .. .+++..|.+..+++++++.+++.+|++.|+++.++++++....... +
T Consensus 75 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~ 154 (447)
T COG0527 75 ELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG 154 (447)
T ss_pred HHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc
Confidence 0 00 1224456677788999999999999999999999988765433221 1
Q ss_pred ------H-HHH-HHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCC
Q 024480 133 ------I-RRR-AVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN 195 (267)
Q Consensus 133 ------~-~~~-l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~ 195 (267)
. .+. +..+++.+.|||++||.| ..+++||++|++||.+|+||+|.+||||||||+.|||..|+
T Consensus 155 ~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~ 234 (447)
T COG0527 155 NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPD 234 (447)
T ss_pred ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCc
Confidence 1 123 556788999999999844 24789999999999999999999999999999999999999
Q ss_pred cccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 196 ARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 196 a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
|++|++|||+|+.|+ |++.+|++|+.+|.+++||++|.|.++|+ ..||+|..+..
T Consensus 235 Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 235 ARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred ceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCc
Confidence 999999999999875 89999999999999999999999999987 57999997754
No 27
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=1.4e-34 Score=267.82 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=174.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhHHhc-C-CCC-CCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAG-N-SGL-DRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~~~~-~-~~l-~~~~~~~~~~~~ 98 (267)
|+++|+||||+++. +.+.+++++++|+.+.+.|+++|+||||+. ..+.+..+. . ... +++..+.+...+
T Consensus 1 m~~~V~KfGGtsv~-------~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~G 73 (392)
T PRK08841 1 MPLIVQKFGGTSVG-------SIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG 73 (392)
T ss_pred CCeEEEeECcccCC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence 45899999999998 568999999999999999999999998854 444432221 1 111 122356666788
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-----ch---HHH-HHHHHHhhCCCEEEEeCCCC---------CCCCCc
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTT 160 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----~~---~~~-~~l~~ll~~g~iPIi~g~~g---------~~~~~s 160 (267)
+.++..+++.+|++.|+++.++++++...+. .. .++ +.+.++++.|.|||++||.+ ..+++|
T Consensus 74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs 153 (392)
T PRK08841 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS 153 (392)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence 8889999999999999999988876642211 11 122 33557889999999999743 135699
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+.+|.+|+|++|++||||||||++||+.+|+|+++++|+|+|+.++ |...+|++|+++|.++|+|++|.|+++
T Consensus 154 D~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~ 233 (392)
T PRK08841 154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE 233 (392)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999988775 788899999999999999999999986
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
+. .||+|..+
T Consensus 234 ~~----------~GT~I~~~ 243 (392)
T PRK08841 234 VG----------EGTLIKGE 243 (392)
T ss_pred CC----------CCeEEEec
Confidence 52 59999654
No 28
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-35 Score=244.96 Aligned_cols=239 Identities=21% Similarity=0.287 Sum_probs=188.3
Q ss_pred ccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCC----------
Q 024480 18 KPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD---------- 87 (267)
Q Consensus 18 ~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~---------- 87 (267)
+...+.+++|||+|.+++++++++.+-...+..+++++.+|++.|+++++|++ |+++-+.++++...+.
T Consensus 4 ~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSS-GaVA~G~qrLr~~~~~s~s~r~~l~~ 82 (285)
T KOG1154|consen 4 AFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSS-GAVAFGRQRLRQELLPSSSMRQTLKP 82 (285)
T ss_pred hhhccceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEec-chhhhhHHHhhhhhccchhHHHhhCC
Confidence 45667889999999999999987778888999999999999999999999984 5655555555421111
Q ss_pred CChHHHHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCC-----CC
Q 024480 88 RSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGT-----GN 155 (267)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~-----g~ 155 (267)
..+....+++++..+..| +...|.++|+... |.+++..||.+. +. ...+.++|..|.|||+|.++ +.
T Consensus 83 ~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~ 161 (285)
T KOG1154|consen 83 QSELAEKRACAAVGQSGLMALYETLFTQYGITIA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREI 161 (285)
T ss_pred ccchhhHHHHHHhCcchHHHHHHHHHHHhccchh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCccc
Confidence 112344556666655544 4566999999865 777888777643 22 23356899999999999863 35
Q ss_pred CCCC---cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh---------hcCCCcc--hHHHHH
Q 024480 156 PFFT---TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAIT 221 (267)
Q Consensus 156 ~~~~---sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~---------~lg~g~m--k~~aa~ 221 (267)
+|.| ||++||.+|.+++||.|+++|||||+|+.+|... ..++|++.+..+-. +.|+|+| |+.||.
T Consensus 162 ~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~ 240 (285)
T KOG1154|consen 162 PFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAV 240 (285)
T ss_pred ccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhhHHHHH
Confidence 6666 9999999999999999999999999999666544 46888888765433 2478999 999999
Q ss_pred HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 222 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 222 ~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
.|...|++++|+||..|+.|.+++.|..+||.|.....
T Consensus 241 ~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~~~ 278 (285)
T KOG1154|consen 241 NALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQLKR 278 (285)
T ss_pred HHhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhccc
Confidence 99999999999999999999999999999999976543
No 29
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=6.9e-34 Score=265.06 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=175.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc-hHHhhhHHhcCCCC----CCChHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG-NIFRGASAAGNSGL----DRSSADYIGMLAT 99 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG-~~~~~~~~~~~~~l----~~~~~~~~~~~~~ 99 (267)
++|+||||+++. +.+.+++++++|+++++.|+++|+||||| .+++.+..+...++ +....+.+..+++
T Consensus 2 ~iViK~GGs~~~-------~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge 74 (401)
T TIGR00656 2 LIVQKFGGTSVG-------SGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGE 74 (401)
T ss_pred cEEEEECCcCcC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHH
Confidence 589999999998 56789999999999998999999999995 45555544432222 2334566777888
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccc-----cc-----hHHHHHHHHHhhCCCEEEEeCCCC-----C----CCCCc
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE-----PYIRRRAVRHLEKGRVVIFAAGTG-----N----PFFTT 160 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~-----~~~~~~l~~ll~~g~iPIi~g~~g-----~----~~~~s 160 (267)
+++..++.++|+++|+++..+++.+...+ .. ....+.+.++++.|.|||++||.+ . .+++|
T Consensus 75 ~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~s 154 (401)
T TIGR00656 75 RLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGS 154 (401)
T ss_pred HHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcH
Confidence 88888899999999999998775543211 10 011144668899999999999632 1 24689
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |...+|++|+.+|.++++|++|.|+++
T Consensus 155 D~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~ 234 (401)
T TIGR00656 155 DYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFD 234 (401)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999875 788889999999999999999999998
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
|+ .||+|...
T Consensus 235 ~~----------~gT~I~~~ 244 (401)
T TIGR00656 235 PE----------EGTLITNS 244 (401)
T ss_pred CC----------CCeEEEeC
Confidence 85 49999764
No 30
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=2.3e-33 Score=251.16 Aligned_cols=214 Identities=27% Similarity=0.363 Sum_probs=169.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
++|.||||+++. +.+.++++++.|.+. ..++++|+|+|+ |.+.+.+..+..
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~ 72 (298)
T cd04244 1 RLVMKFGGTSVG-------SAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLR 72 (298)
T ss_pred CEEEEECcccCC-------CHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 479999999998 678999999999876 457789999888 433322211100
Q ss_pred --------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc
Q 024480 84 --------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125 (267)
Q Consensus 84 --------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~ 125 (267)
..+++...|.+..+++++++.++..+|+++|+++.++++.+.
T Consensus 73 h~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~ 152 (298)
T cd04244 73 HIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEA 152 (298)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHc
Confidence 011223345555678899999999999999999999887654
Q ss_pred cc-----ccc--------hHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 126 SE-----VAE--------PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 126 ~~-----~~~--------~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.. +.+ .+++..+..+++.+.|||++||.+ ..+++||++|+.+|.+|+|++|++|||||
T Consensus 153 ~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~ 232 (298)
T cd04244 153 GIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298)
T ss_pred ceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 31 111 123334556778899999999732 13679999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|||+.||+.+|+++++++++|+|+.++ |.+.+|++|+.+|.++|||++|.|+++|+ ..||+|+
T Consensus 233 Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCC---------CCCCEeC
Confidence 999999999999999999999999876 78888999999999999999999999987 6799984
No 31
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=5.5e-33 Score=242.65 Aligned_cols=214 Identities=25% Similarity=0.335 Sum_probs=163.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHH-----hhhHHhcC-CCCC--CChHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIF-----RGASAAGN-SGLD--RSSADYIG 95 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~-----~~~~~~~~-~~l~--~~~~~~~~ 95 (267)
.+|||||||+++ +.+.+++++++|+++.+.|+++||||+| |..+ +.+..... .+.+ ....+.+.
T Consensus 1 ~~ViK~GGs~l~-------~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~ 73 (244)
T cd04260 1 IIVQKFGGTSVS-------TKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLM 73 (244)
T ss_pred CEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 379999999998 4568899999999999998876666632 3321 12222111 1222 22344555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccc-----ccc--c-hHHH-HHHHHHhhCCCEEEEeCC---CCC------CC
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVA--E-PYIR-RRAVRHLEKGRVVIFAAG---TGN------PF 157 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~~~--~-~~~~-~~l~~ll~~g~iPIi~g~---~g~------~~ 157 (267)
+.+++.+..++.++|+++|+++..+++.+.. .+. + .+++ +.+.++++.|+|||++|+ ++. .+
T Consensus 74 ~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~r 153 (244)
T cd04260 74 SCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGR 153 (244)
T ss_pred HHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCC
Confidence 5667777767889999999999987755432 111 1 1122 335678999999999996 222 23
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
+++|++|+.+|.+|+|++|+|||||||||++||+.+|++++|++|+++|+.++ |...+|++|++++.+++++++|.|
T Consensus 154 g~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~ 233 (244)
T cd04260 154 GGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRS 233 (244)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 48999999999999999999999999999999999999999999999998875 677889999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEe
Q 024480 235 LNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~ 255 (267)
+++|. .||+|+
T Consensus 234 ~~~~~----------~gt~i~ 244 (244)
T cd04260 234 TMSEN----------PGTLIT 244 (244)
T ss_pred CCCCC----------CCCEeC
Confidence 98764 499884
No 32
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=6e-33 Score=258.83 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=170.0
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHh-----hhHHhcC---CCCCCChHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFR-----GASAAGN---SGLDRSSADY 93 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~-----~~~~~~~---~~l~~~~~~~ 93 (267)
|+++|||||||++++ .+.+.+++++|+.+.++|+++||||+| |++++ .+..... ...+....+.
T Consensus 1 m~~iViK~GGs~l~~-------~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~ 73 (403)
T PRK08210 1 MKIIVQKFGGTSVST-------EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL 73 (403)
T ss_pred CCeEEEeECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence 478999999999984 457889999999999999998877754 44321 2211110 1123334566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----cc---hHHH-HHHHHHhhCCCEEEEeCCCC-----C----
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGTG-----N---- 155 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~---~~~~-~~l~~ll~~g~iPIi~g~~g-----~---- 155 (267)
+..+++..+..++.++|.++|+++.++++.+...+ .. ...+ +.+.++++.+.|||++|+.+ .
T Consensus 74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l 153 (403)
T PRK08210 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL 153 (403)
T ss_pred HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence 66678888888888999999999998876543211 11 1122 33557889999999999732 1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEE
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVV 232 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I 232 (267)
.++++|++|+.+|.+|+|++|+|||||||||++||+.+|++++|++++++|+.++ |...+|++|+++|.++++|++|
T Consensus 154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i 233 (403)
T PRK08210 154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI 233 (403)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence 2358999999999999999999999999999999999999999999999998875 7888999999999999999999
Q ss_pred EcCCCCCcHHHHhcCCCcceEEecC
Q 024480 233 FNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 233 ~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.|++++. .||+|...
T Consensus 234 ~~~~~~~----------~gT~I~~~ 248 (403)
T PRK08210 234 RSTYSDS----------PGTLITSL 248 (403)
T ss_pred EecCCCc----------CCcEEEec
Confidence 9998643 49999764
No 33
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=1.2e-32 Score=247.80 Aligned_cols=233 Identities=19% Similarity=0.276 Sum_probs=175.7
Q ss_pred CCCCCc--cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----C
Q 024480 13 DNGMSK--PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----S 84 (267)
Q Consensus 13 ~~~~~~--~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~ 84 (267)
+|+... +.++.+++||||||++++++ +....++++|+.+++.|.++|||||||++.+.+.. .+. .
T Consensus 35 ~r~~~pyi~~~~~~tiVIKlGGs~i~d~-------~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~ 107 (309)
T PLN02512 35 LSEALPFIQRFRGKTVVVKYGGAAMKDP-------ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKN 107 (309)
T ss_pred HHHHhHHHHHHCCCeEEEEECCeeccCh-------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCC
Confidence 444443 45778999999999999854 35567889999888899999999999998766432 221 2
Q ss_pred CCCCChHHH---HHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccc-----------ccc---ch-HHH-HHHHHHhhCC
Q 024480 85 GLDRSSADY---IGM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVA---EP-YIR-RRAVRHLEKG 144 (267)
Q Consensus 85 ~l~~~~~~~---~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~---~~-~~~-~~l~~ll~~g 144 (267)
|++...... +.+ ++..+|..++ +.|.++|+++.++++.+.. ++. +. .++ +.+..+|+.|
T Consensus 108 G~rvT~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g 186 (309)
T PLN02512 108 GLRVTDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDG 186 (309)
T ss_pred CCcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCC
Confidence 232222222 222 3446787655 7899999999988766531 111 00 123 3356789999
Q ss_pred CEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCc
Q 024480 145 RVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSV 214 (267)
Q Consensus 145 ~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~ 214 (267)
.|||++|+ .+. ..+++|.+|+++|.+|+|++|+|+|||||||+++| +++++|++|+++|+.++ .+|+
T Consensus 187 ~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGG 263 (309)
T PLN02512 187 HIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGG 263 (309)
T ss_pred CEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCc
Confidence 99999996 122 34699999999999999999999999999998764 34789999999887764 3788
Q ss_pred c--hHHHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEec
Q 024480 215 M--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 256 (267)
Q Consensus 215 m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~ 256 (267)
| |++++..+.+.|++ ++|+||+.|+.+. +++.++..||+|.+
T Consensus 264 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 8 99999999999995 9999999998875 78888889999964
No 34
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=100.00 E-value=1.3e-32 Score=271.78 Aligned_cols=232 Identities=19% Similarity=0.278 Sum_probs=178.5
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCC---------CCChHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL---------DRSSAD 92 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l---------~~~~~~ 92 (267)
+.+++|||+|||+|++++ +.++.+.+.+++++|++|++.|+++|||++ |+.+.++..++.+++ .+....
T Consensus 6 ~~~~iViKiGss~lt~~~-~~~~~~~l~~l~~~i~~l~~~g~~vilVsS-GA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 6 DVKRIVVKVGTAVVTRGD-GRLALGRLGSICEQLSELNSDGREVILVTS-GAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred cCCEEEEEeCcceeECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEcc-chHHhchHHhccchhccccccccCCCCchH
Confidence 468999999999999875 478999999999999999999999999653 333334443432221 112223
Q ss_pred HHHHHHHHHHHHH---HHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCC-----CC-----
Q 024480 93 YIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGT-----GN----- 155 (267)
Q Consensus 93 ~~~~~~~~~~~~l---~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~-----g~----- 155 (267)
..+++++..+..| +++.|.++++.+. |.+++..++... +. ...+..+|+.|.|||+++++ +.
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~ 162 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAA-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDS 162 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeE-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccc
Confidence 3455555555444 4567899999875 666776666533 22 23356789999999999731 11
Q ss_pred --CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh-h--------cCCCcc--hHHHHHH
Q 024480 156 --PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT-S--------KDLSVM--DMTAITL 222 (267)
Q Consensus 156 --~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~-~--------lg~g~m--k~~aa~~ 222 (267)
.++|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++..+.. + .++|+| |++|+..
T Consensus 163 ~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~ 241 (715)
T TIGR01092 163 QGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVW 241 (715)
T ss_pred cceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHH
Confidence 168999999999999999999999999999999996 6899999998764322 1 247888 8999999
Q ss_pred HHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 223 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+.++|++++|+|+++++.|.++++|+..||+|.+.
T Consensus 242 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 242 AAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred HHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 99999999999999999999999999899999753
No 35
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=8.6e-33 Score=257.92 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=171.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhH-HhcC-CCC-CCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGAS-AAGN-SGL-DRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~-~~~~-~~l-~~~~~~~~~~~~ 98 (267)
|+++|+||||+++. +.+.+++++++|+++.+.|+++|+|||| |.+.+.+. .++. .+. +....+.+.+.+
T Consensus 1 m~~iViK~GGs~l~-------~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVG-------DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG 73 (404)
T ss_pred CCeEEEeECCcccC-------CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence 46899999999997 5678999999999999889999998886 55554432 2221 111 223345555567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-----ch---HHH-HHHHHHhhCCCEEEEeCCCC---------CCCCCc
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTT 160 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----~~---~~~-~~l~~ll~~g~iPIi~g~~g---------~~~~~s 160 (267)
+.++..++.++|+++|+++.++++.+...+. .. ..+ +.+.++++.|.|||++||.+ ..+++|
T Consensus 74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s 153 (404)
T PRK06635 74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS 153 (404)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence 7888888889999999999887765542111 10 112 34567899999999999732 134699
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCC
Q 024480 161 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 161 D~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
|++|+++|.+|+|++|++||||||||++||+.+|+++++++++++|+.++ |...+|++|+.++.++|++++|.|+++
T Consensus 154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~ 233 (404)
T PRK06635 154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS 233 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence 99999999999999999999999999999999999999999999998875 677789999999999999999999885
Q ss_pred CCcHHHHhcCCCcceEEecC
Q 024480 238 PGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~~ 257 (267)
+. .||+|...
T Consensus 234 ~~----------~gT~i~~~ 243 (404)
T PRK06635 234 DN----------PGTLITGE 243 (404)
T ss_pred CC----------CCCEEeeC
Confidence 52 59999764
No 36
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=9.4e-33 Score=244.29 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=166.7
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----C---C--CCCCh---
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----S---G--LDRSS--- 90 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~---~--l~~~~--- 90 (267)
|+||||||+++.++ .+++++|+.+.+.|.++|||||||++.+.+. +.+. . | ++.+.
T Consensus 1 ~~ViK~GG~~l~~~----------~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~ 70 (268)
T PRK14058 1 MIVVKIGGSVGIDP----------EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRET 70 (268)
T ss_pred CEEEEEChHHhhCc----------HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHH
Confidence 68999999999753 2568999999999999999999999876643 2221 0 2 22222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------------------cchH------HH-HHHHHHhhC
Q 024480 91 ADYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AEPY------IR-RRAVRHLEK 143 (267)
Q Consensus 91 ~~~~~-~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------------------~~~~------~~-~~l~~ll~~ 143 (267)
.+.+. .++ .+|..++ ++|.++|+++.++++.+...+ +..| ++ +.+..++++
T Consensus 71 l~~~~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~ 148 (268)
T PRK14058 71 LEVFIMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKA 148 (268)
T ss_pred HHHHHHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHC
Confidence 23333 344 7888776 589999999988776553211 0011 22 345688999
Q ss_pred CCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc
Q 024480 144 GRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM 215 (267)
Q Consensus 144 g~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m 215 (267)
|+|||++|+ .|. .++++|.+|+++|.+|+|++|+|+|||||||++||. ++++|++++++|+.++ .+|+|
T Consensus 149 g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM 225 (268)
T PRK14058 149 GYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGM 225 (268)
T ss_pred CCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCcc
Confidence 999999985 222 358999999999999999999999999999999883 4689999999887765 57888
Q ss_pred --hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 216 --DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 216 --k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|++++..+.++|+ +++|+|+++|+++.++++|+ ||+|.+
T Consensus 226 ~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 226 KKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 9999999999999 69999999999999999875 999964
No 37
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=1.8e-32 Score=266.56 Aligned_cols=218 Identities=24% Similarity=0.331 Sum_probs=173.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcCCCCCC----ChHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDR----SSADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~~~l~~----~~~~~~~~~ 97 (267)
|+++|+||||+++. +.+.+++++++|+++.+.|+++|||||| |.+.+.+..+.. ++.. ...+.+...
T Consensus 1 m~~iViKfGGss~~-------~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~-~~t~~~~~~~~~~~ls~ 72 (587)
T PRK07431 1 MALIVQKFGGTSVG-------SVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK-EISSNPPRREMDMLLST 72 (587)
T ss_pred CCeEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH-HhccCCCHHHHHHHHHH
Confidence 46899999999997 6789999999999999999999999996 666655544321 1211 123444445
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccch--------HHH-HHHHHHhhCCCEEEEeCCCCC-----------CC
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------YIR-RRAVRHLEKGRVVIFAAGTGN-----------PF 157 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--------~~~-~~l~~ll~~g~iPIi~g~~g~-----------~~ 157 (267)
++.++..+++.+|.++|+++.++++.+...+... .++ +.+.++++.|.|||++|+.|. .+
T Consensus 73 Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgr 152 (587)
T PRK07431 73 GEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGR 152 (587)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCC
Confidence 6778888888899999999998876654222110 112 346678999999999986331 24
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
+++|++|+++|.+|+|++|++||||||||++||+.+|++++|++++++|+.++ |.++||++|++++.++|+|++|.|
T Consensus 153 ggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~ 232 (587)
T PRK07431 153 GGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232 (587)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEec
Confidence 67999999999999999999999999999999999999999999999998875 888999999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEecCC
Q 024480 235 LNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++. + ..||+|.+..
T Consensus 233 ~~~-~---------~~GT~i~~~~ 246 (587)
T PRK07431 233 SWS-D---------APGTLVTSPP 246 (587)
T ss_pred CCC-C---------CCCeEEEeCC
Confidence 872 2 3599998653
No 38
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=4.7e-32 Score=241.55 Aligned_cols=226 Identities=16% Similarity=0.228 Sum_probs=172.5
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~~ 92 (267)
+.++.+++|||+||+++.++ .....++++|+.|+..|.++|||||||++.+... +.+. .|++.+..+
T Consensus 19 ~~~~~~~~VIk~gG~~~~~~-------~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~ 91 (284)
T CHL00202 19 QKFRGRIMVIKYGGAAMKNL-------ILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKV 91 (284)
T ss_pred HHHcCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHH
Confidence 45677999999999998642 3456899999999999999999999999876543 2221 344333333
Q ss_pred H---HHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc--------cch------HHH-HHHHHHhhCCCEEEEeCC-
Q 024480 93 Y---IGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------AEP------YIR-RRAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 93 ~---~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~--------~~~------~~~-~~l~~ll~~g~iPIi~g~- 152 (267)
. +.+ ++..+|..++ ++|.++|+++.++++.+...+ ... .++ +.+..+|++|+|||+++.
T Consensus 92 ~l~~~~~~l~g~ln~~lv-~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~ 170 (284)
T CHL00202 92 TMEIVEMVLAGKVNKDLV-GSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVA 170 (284)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCc
Confidence 2 222 4456787765 688999999998877653211 001 123 335678999999999984
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~ 221 (267)
.|.. ++|+|++|+.+|.+|+|++|+|+|||||||+++ .+| .++|++++++|+.++ .+|+| |+++|.
T Consensus 171 ~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~ 247 (284)
T CHL00202 171 ADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCI 247 (284)
T ss_pred cCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 2333 479999999999999999999999999999853 123 379999999887764 36888 899999
Q ss_pred HHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEe
Q 024480 222 LCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIG 255 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~ 255 (267)
.+.++|++ ++|+||+.|+.+ .++|++++.||+|.
T Consensus 248 ~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 248 RALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 99999996 899999999974 78999999999985
No 39
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=2.6e-32 Score=243.36 Aligned_cols=225 Identities=23% Similarity=0.307 Sum_probs=172.4
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~- 91 (267)
++++++++||||||++++++ +.+..++++|+.+++.|.++|||||+|++.+.+.. .+. .+++....
T Consensus 19 ~~~~~~~iViK~GGs~l~~~-------~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~ 91 (283)
T PRK00942 19 QRFMGKTIVIKYGGNAMTDE-------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAE 91 (283)
T ss_pred HHHcCCeEEEEEChHHhcCc-------chHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHH
Confidence 45678899999999999864 35678999999999999999999999998766443 321 12222222
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------c-hHHH-HHHHHHhhCCCEEEEeCC
Q 024480 92 --DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------E-PYIR-RRAVRHLEKGRVVIFAAG 152 (267)
Q Consensus 92 --~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~-~~~~-~~l~~ll~~g~iPIi~g~ 152 (267)
+...+ ++..+|..++ ++|.++|+++..+++.+...+. . ..++ +.+..+|++|.|||+++.
T Consensus 92 ~l~~~~~a~~G~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~ 170 (283)
T PRK00942 92 TMEVVEMVLAGKVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPI 170 (283)
T ss_pred HHHHHHHHHcCchHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCc
Confidence 22222 2235777655 7899999998877765432110 0 0123 335688999999999974
Q ss_pred ----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHH
Q 024480 153 ----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAI 220 (267)
Q Consensus 153 ----~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa 220 (267)
.| ..++++|.+|+++|.+|+|++|+|+|||||||++ ++++|++|+++|+.++ .+|+| |+++|
T Consensus 171 ~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a 244 (283)
T PRK00942 171 GVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAA 244 (283)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHH
Confidence 22 2358999999999999999999999999999986 3789999999987764 36788 89999
Q ss_pred HHHHhCCC-cEEEEcCCCCCc-HHHHhcCCCcceEEecC
Q 024480 221 TLCQENNI-PVVVFNLNQPGN-IAKAIQGERVGTLIGGT 257 (267)
Q Consensus 221 ~~a~~~Gi-~v~I~ng~~~~~-i~~~l~g~~~GT~I~~~ 257 (267)
..+.++|+ +++|+|++.|++ +.++++|+.+||+|.+.
T Consensus 245 ~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 245 LDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999998 599999999999 78999999999999763
No 40
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-32 Score=234.83 Aligned_cols=222 Identities=24% Similarity=0.343 Sum_probs=175.2
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhHHhcC-----CCCCCChH---H
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSA---D 92 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~~~~~-----~~l~~~~~---~ 92 (267)
++|++|||+||+++.+ .+.+++++++|+.|+..|.+.|||||||++-. .+.+.+. .|++.+.. +
T Consensus 1 ~~k~~VIK~GG~~~~~-------~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tle 73 (265)
T COG0548 1 RGKTIVIKLGGSAMED-------ENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLE 73 (265)
T ss_pred CCceEEEEECceeecC-------chHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHH
Confidence 3689999999999984 35689999999999999999999999998654 3444442 45554443 3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc-----------chH------HHHH-HHHHhhCCCEEEEeCC-
Q 024480 93 YIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-----------EPY------IRRR-AVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 93 ~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-----------~~~------~~~~-l~~ll~~g~iPIi~g~- 152 (267)
...+ ++...|..++ +.|+.+|.+++.+++.+..-+. -.| +|.. +..++++++|||+++.
T Consensus 74 vv~mvl~G~vNk~iv-a~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia 152 (265)
T COG0548 74 VVEMVLGGTVNKEIV-ARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIA 152 (265)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecce
Confidence 3333 5556788766 6888899988888776632110 111 3454 4578999999999984
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C--CCcc--hHHHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g--~g~m--k~~aa~ 221 (267)
+|.. ++++|++|+.+|.+|+|++|+++|||+|||+++|. | +++++++.+|+.++ + +++| |+++|.
T Consensus 153 ~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~ 228 (265)
T COG0548 153 VDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAAL 228 (265)
T ss_pred ECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHH
Confidence 4444 48999999999999999999999999999998753 2 69999999988875 3 5788 899999
Q ss_pred HHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEe
Q 024480 222 LCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIG 255 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~ 255 (267)
.|+++|++ ++|+||+.++.+. ++|++++.||.|.
T Consensus 229 ~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 229 EALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 99999995 9999999999966 6899999999986
No 41
>PRK12353 putative amino acid kinase; Reviewed
Probab=100.00 E-value=5.2e-32 Score=243.73 Aligned_cols=228 Identities=21% Similarity=0.266 Sum_probs=163.9
Q ss_pred ccceEEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchH-HhhhHHhcC---CC--CCCChHHH-
Q 024480 22 KWQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGN---SG--LDRSSADY- 93 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~-~~~~~~~~~---~~--l~~~~~~~- 93 (267)
.++++||||||++|++++. .+++.+.+.+++++|+.+++.|+++|||||||++ ++.+..... ++ ++..+.+.
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 3789999999999998764 5689999999999999999999999999999876 433222111 11 11111221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCee-----Eeecccccccc---------------------------------ch
Q 024480 94 ----IGMLATVMNAIFLQATMESIGIPTR-----VQTAFRMSEVA---------------------------------EP 131 (267)
Q Consensus 94 ----~~~~~~~~~~~l~~~~l~~~Gi~~~-----~~~~~~~~~~~---------------------------------~~ 131 (267)
.++++..++. .+.+.|..+|+... .+.+++.++.. +.
T Consensus 81 ~a~~qg~l~~~l~~-~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (314)
T PRK12353 81 GAMSQGYIGYHLQN-ALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRG 159 (314)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCce
Confidence 1223333343 34567888877322 12222222200 01
Q ss_pred H------------HHHH-HHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IRRR-AVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~~~-l~~ll~~g~iPIi~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
+ ++.+ +..+|+.|+|||++|+.+. .++|+|.+|+++|.+|+||+|+|+||||||
T Consensus 160 ~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGV 239 (314)
T PRK12353 160 YRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKV 239 (314)
T ss_pred eEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 1 2233 4568999999999975321 147889999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHH--hCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~--~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|+++| +|++++|+++++.|+.++ ++|+| |+++|..+. +.|++++|+| ++.+.++++|+ .||+|.
T Consensus 240 y~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 240 YINFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIV 313 (314)
T ss_pred cCCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEec
Confidence 99766 488999999999876643 46788 889998877 6788999997 78888999998 899996
Q ss_pred c
Q 024480 256 G 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 314 ~ 314 (314)
T PRK12353 314 K 314 (314)
T ss_pred C
Confidence 4
No 42
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=100.00 E-value=4.7e-32 Score=267.49 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=179.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCC--------C--CCCh
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG--------L--DRSS 90 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~--------l--~~~~ 90 (267)
.+++++|+||||++|++.+ +.++.+.+.+++++|+++++.|+++|||+| |+.+.+...++... + +...
T Consensus 13 ~~~~~iViK~G~ssl~~~~-~~~~~~~i~~l~~~i~~l~~~g~~vvlVsS-ga~~~g~~~l~~~~~~~~~~~~~~~~~~~ 90 (718)
T PLN02418 13 RDVKRVVIKVGTAVVTRDD-GRLALGRLGALCEQIKELNSDGYEVILVSS-GAVGVGRQRLRYRRLVNSSFADLQKPQME 90 (718)
T ss_pred hhCCEEEEEeCCCeecCCC-CCccHHHHHHHHHHHHHHHHCCCEEEEEec-chHHHHHHHHhhhhhhhcccccCCCCcch
Confidence 3578999999999998754 368899999999999999999999999985 55444433332101 1 1223
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch--HH--HHHHHHHhhCCCEEEEeCCCC-----C----
Q 024480 91 ADY--IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YI--RRRAVRHLEKGRVVIFAAGTG-----N---- 155 (267)
Q Consensus 91 ~~~--~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~--~~--~~~l~~ll~~g~iPIi~g~~g-----~---- 155 (267)
.+. +.+.++.....++.++|+++|+++. +...+.+++..+ +. .+.+..+|+.|.|||+++++. .
T Consensus 91 ~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~ 169 (718)
T PLN02418 91 LDGKACAAVGQSELMALYDTLFSQLDVTAS-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYED 169 (718)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCeEE-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCcccccccccc
Confidence 342 2335555666678899999999765 445665665422 22 234567899999999998521 1
Q ss_pred ---CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh---------hcCCCcc--hHHHHH
Q 024480 156 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAIT 221 (267)
Q Consensus 156 ---~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~---------~lg~g~m--k~~aa~ 221 (267)
.++|||++|+++|.+++|++|+|+|||||||++||+ +|++++|++++..+.. ..++|+| |++|+.
T Consensus 170 ~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~ 248 (718)
T PLN02418 170 SSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAV 248 (718)
T ss_pred ccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHH
Confidence 356899999999999999999999999999999997 6899999999754321 1258899 899999
Q ss_pred HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 222 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 222 ~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
.+.++|++++|+||++|+.+.++|+|+..||+|.+
T Consensus 249 ~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 283 (718)
T PLN02418 249 NAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQ 283 (718)
T ss_pred HHHHCCCcEEEeCCCCcchHHHHhcCCCCceEecc
Confidence 99999999999999999999999999999999976
No 43
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=6e-32 Score=241.27 Aligned_cols=215 Identities=24% Similarity=0.255 Sum_probs=167.3
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----c------------C----
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----G------------N---- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~------------~---- 83 (267)
++|.||||+++. +.+.++++++.|.+..+++.++|+|.|+ |.+.+.+..+ . .
T Consensus 1 ~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~ 73 (295)
T cd04259 1 WVVLKFGGTSVS-------SRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLN 73 (295)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 469999999998 6789999999888755667788888888 3222111000 0 0
Q ss_pred ------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----ccc
Q 024480 84 ------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA 129 (267)
Q Consensus 84 ------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~ 129 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.. ++.
T Consensus 74 ~~~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~ 153 (295)
T cd04259 74 LAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLG 153 (295)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeeccccc
Confidence 0122334566667899999999999999999999988765531 111
Q ss_pred ---chH---------HHHHHHHHhhC-CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 130 ---EPY---------IRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 130 ---~~~---------~~~~l~~ll~~-g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
..| ....+.+.++. +.|||++||.| ..+++||++|+.+|.+|+|+.|++||||||||+
T Consensus 154 ~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt 233 (295)
T cd04259 154 GETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233 (295)
T ss_pred ccccccccceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 011 12334555654 67999999843 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|++++|++++|+|+.++ |...+|++|+++|.++|||++|.|+++|+ ..||+|+
T Consensus 234 ~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 99999999999999999998875 77788999999999999999999999987 7799984
No 44
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=4e-32 Score=241.70 Aligned_cols=225 Identities=21% Similarity=0.303 Sum_probs=170.9
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~- 91 (267)
+.++.+++||||||++++++ +.+..++++++.+++.|.++|||||||++.+.+. +.+. .|++....
T Consensus 10 ~~~~~~~~ViKlGGs~i~~~-------~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~ 82 (279)
T cd04250 10 QKFRGKTVVIKYGGNAMKDE-------ELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEE 82 (279)
T ss_pred HHHcCCEEEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHH
Confidence 34667899999999999854 3567888999988888999999999999876543 3221 12222222
Q ss_pred --HHHHH-HHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------chH------HH-HHHHHHhhCCCEE
Q 024480 92 --DYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------EPY------IR-RRAVRHLEKGRVV 147 (267)
Q Consensus 92 --~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~~~------~~-~~l~~ll~~g~iP 147 (267)
+...+ ++..+|..+ .+.|.++|+++.++++.+...+. ..+ ++ +.+.++|+.|.||
T Consensus 83 ~~~~~~~~~~g~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IP 161 (279)
T cd04250 83 TMEIVEMVLVGKVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIP 161 (279)
T ss_pred HHHHHHHHHcCchHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeE
Confidence 22222 223677775 57899999999988765431110 011 22 3356789999999
Q ss_pred EEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--
Q 024480 148 IFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM-- 215 (267)
Q Consensus 148 Ii~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m-- 215 (267)
|+++. .+. .++|+|.+|+++|.+|+|++|+|+|||||||++||+ ++++|++++++|+.++ .+|+|
T Consensus 162 Vi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~ 238 (279)
T cd04250 162 VIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIP 238 (279)
T ss_pred EEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHH
Confidence 99985 122 247999999999999999999999999999999884 3799999999887654 47888
Q ss_pred hHHHHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEE
Q 024480 216 DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLI 254 (267)
Q Consensus 216 k~~aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I 254 (267)
|+++|..+.++|++ ++|+|+++|+++ .+++++++.||.|
T Consensus 239 Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 239 KVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 89999999999986 999999999975 6899998899975
No 45
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=1.2e-31 Score=238.31 Aligned_cols=212 Identities=21% Similarity=0.235 Sum_probs=167.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-c-------hHHhhhHHhc----C---------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-G-------NIFRGASAAG----N--------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G-------~~~~~~~~~~----~--------- 83 (267)
|.|.||||+++. +.+.++++++.|.. ++.++++|+++ | .+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~ 70 (288)
T cd04245 1 MKVVKFGGSSLA-------SAEQFQKVKAIVKA---DPERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESIFE 70 (288)
T ss_pred CEEEEECcCccC-------CHHHHHHHHHHHHh---cCCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcCcchHHHHH
Confidence 359999999998 57788999888874 24678888887 4 2333321110 0
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 129 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~ 129 (267)
...+++..|.+...++++++.+++.+|++.|+++..+++++.+.+.
T Consensus 71 ~i~~~h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t 150 (288)
T cd04245 71 AIVDRYAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVV 150 (288)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceee
Confidence 0011223455667889999999999999999999988876653221
Q ss_pred -chH--------HHHHHHHHhhCCCEEEEeCCCCC---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 024480 130 -EPY--------IRRRAVRHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 191 (267)
Q Consensus 130 -~~~--------~~~~l~~ll~~g~iPIi~g~~g~---------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~ 191 (267)
..+ ..+.+.+.++.+.|||++||.|. +++++|+.|+.+|.+|+|+.+.+||||||||++||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr 230 (288)
T cd04245 151 TDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPR 230 (288)
T ss_pred cCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCC
Confidence 111 12345677788899999998642 468999999999999999999999999999999999
Q ss_pred CCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 192 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 192 ~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
.+|+|+.++++||+|+.++ |...||+.|+.+|.+++||++|.|.++|+ ..||+|.
T Consensus 231 ~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 231 IVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCC---------CCCceeC
Confidence 9999999999999999885 88999999999999999999999999987 6799984
No 46
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=1.5e-31 Score=238.74 Aligned_cols=214 Identities=25% Similarity=0.316 Sum_probs=165.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+.. ++.++|+|+++ |.+.+.+..+..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h 72 (294)
T cd04257 1 MKVLKFGGTSLA-------NAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKH 72 (294)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 469999999998 5678999999998755 45688888887 433222111000
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
..+++...|.+..+++++++.+++.+|++.|+++.++++.+.-
T Consensus 73 ~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 152 (294)
T cd04257 73 LDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELI 152 (294)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHee
Confidence 0112223345556788999999999999999999988765531
Q ss_pred ----cccc-----hHHHHHHHHHhhC-CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 ----EVAE-----PYIRRRAVRHLEK-GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 ----~~~~-----~~~~~~l~~ll~~-g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
.... ....+.+.++++. +.|||++||.+ ..+++||++|+++|..|+|++|++||||||||+
T Consensus 153 ~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt 232 (294)
T cd04257 153 VTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232 (294)
T ss_pred EecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCC
Confidence 1110 1112344555555 89999999843 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
.||+.+|+|+++++|+|+|+.++ |+..+|++|+.+|.++|||++|.|+++|+ ..||+|.
T Consensus 233 ~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 233 ADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCC---------CCCCEeC
Confidence 99999999999999999998874 88889999999999999999999999987 6799984
No 47
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=2.7e-31 Score=250.33 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=171.0
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC---CCC--------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN---SGL-------------- 86 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~---~~l-------------- 86 (267)
++|+||||+++. +.+.+.++++.|....+.|+++|+|||| |.+.+.+..+.. .+-
T Consensus 2 ~~V~KFGGssv~-------~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (441)
T TIGR00657 2 LIVQKFGGTSVG-------NAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIE 74 (441)
T ss_pred CEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 579999999998 5789999999999888888999999988 444444322210 000
Q ss_pred --------------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----cch----
Q 024480 87 --------------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP---- 131 (267)
Q Consensus 87 --------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~~~---- 131 (267)
+....+.+..+++++++.++..+|+++|+++..+++.+...+ .+.
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~ 154 (441)
T TIGR00657 75 ILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVII 154 (441)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecH
Confidence 011233444568889999999999999999988877654221 111
Q ss_pred HHH-HHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccc
Q 024480 132 YIR-RRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 201 (267)
Q Consensus 132 ~~~-~~l~~ll~~g~iPIi~g~~g-----~----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~ 201 (267)
..+ +.+.++++.|.|||++||.+ . .++++|++|+++|.+|+|++|++||||||||++||+.+|+++++++
T Consensus 155 ~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~ 234 (441)
T TIGR00657 155 EILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDE 234 (441)
T ss_pred hhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCc
Confidence 112 33557889999999999722 1 2468999999999999999999999999999999999999999999
Q ss_pred cCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 202 LTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 202 Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
++++|+.++ |...+|++|+.++.++++|++|.|+++|+ ..||+|.+.
T Consensus 235 is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 284 (441)
T TIGR00657 235 ISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVAS 284 (441)
T ss_pred cCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeC
Confidence 999998875 77788999999999999999999999886 569999865
No 48
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.98 E-value=4.2e-31 Score=235.74 Aligned_cols=213 Identities=26% Similarity=0.348 Sum_probs=164.5
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c---C----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---N---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~---~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|.... +.++++|+++ |.+.+.+..+ . .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~--~~~~vvVvSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h 71 (293)
T cd04243 1 MKVLKFGGTSVA-------SAERIRRVADIIKSRA--SSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERH 71 (293)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHHHhc--CCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 479999999998 6788999998887643 6688888888 4322221110 0 0
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
..+++...+.+...++++++.+++.+|++.|+++.++++...-
T Consensus 72 ~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i 151 (293)
T cd04243 72 LDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL 151 (293)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE
Confidence 0012233355556788999999999999999999988765431
Q ss_pred c----ccch---HH--HHHHHHHhhC-CCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 E----VAEP---YI--RRRAVRHLEK-GRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 ~----~~~~---~~--~~~l~~ll~~-g~iPIi~g~~g-----~----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
. .... +. .+.+..+++. +.|||++||.+ . .+++||++|+.+|.+++|++|++||||||||+
T Consensus 152 ~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt 231 (293)
T cd04243 152 LTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYT 231 (293)
T ss_pred EecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCC
Confidence 1 1111 11 2234556665 89999999843 1 35789999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|++++|++++|+|+.++ |...+|+.|+.+|.+++||++|.|+++|+ ..||+|.
T Consensus 232 ~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 232 ADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCC---------CCCCEeC
Confidence 99999999999999999998874 88889999999999999999999999987 6799984
No 49
>PRK06291 aspartate kinase; Provisional
Probab=99.98 E-value=5e-31 Score=249.73 Aligned_cols=217 Identities=25% Similarity=0.322 Sum_probs=172.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC--------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN-------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~-------------------- 83 (267)
++|.||||+++. +.+.++++++.|.+..++++++|+|.++ |.+.+.+..+.+
T Consensus 2 ~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (465)
T PRK06291 2 RLVMKFGGTSVG-------DGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRE 74 (465)
T ss_pred cEEEEeCcccCC-------CHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 479999999998 5789999999998776678889999988 432222111000
Q ss_pred ----------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecc
Q 024480 84 ----------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 123 (267)
Q Consensus 84 ----------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~ 123 (267)
..++++..|.+..+++.+++.++..+|+++|+++.+++++
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~ 154 (465)
T PRK06291 75 RHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGG 154 (465)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchH
Confidence 0112233456667889999999999999999999998876
Q ss_pred ccccc-----c--------chHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 124 RMSEV-----A--------EPYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 124 ~~~~~-----~--------~~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
+.+.+ . ..++.+.+..+++.|.|||++||.+ ..+++||++|+++|.+|+|++|++|||
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~td 234 (465)
T PRK06291 155 EAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTD 234 (465)
T ss_pred HCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEEC
Confidence 64211 1 1123334556788999999999722 235799999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||++||+.+|+++++++++|+|+.++ |...+|++|+.+|.++|||++|.|+++|+ ..||+|...
T Consensus 235 V~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 235 VDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred CCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999999999999999998875 78888999999999999999999999886 679999754
No 50
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.98 E-value=7.4e-31 Score=233.64 Aligned_cols=212 Identities=24% Similarity=0.279 Sum_probs=164.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----cC----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|... +.++|+|+++ |.+.+.+..+ ..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~~---~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~l~~l~~~ 70 (292)
T cd04258 1 MVVAKFGGTSVA-------DYAAMLRCAAIVKSD---ASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAI 70 (292)
T ss_pred CEEEEECccccC-------CHHHHHHHHHHHhcc---CCCEEEEEeCCCCchHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 479999999998 577889998888753 5678888888 4322221100 00
Q ss_pred -----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc--
Q 024480 84 -----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS-- 126 (267)
Q Consensus 84 -----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-- 126 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++.+..
T Consensus 71 h~~~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t 150 (292)
T cd04258 71 HFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRT 150 (292)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEe
Confidence 0112234566777899999999999999999999988875541
Q ss_pred --ccc--c---hHHHHHH---HHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 127 --EVA--E---PYIRRRA---VRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 127 --~~~--~---~~~~~~l---~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
.+. + ....+.+ .+.+..+.|||++||.| ..+++||++|+.+|.+|+|+++++||||||||+
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~ 230 (292)
T cd04258 151 DSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYT 230 (292)
T ss_pred cCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCC
Confidence 111 1 1122222 23345678999999844 246899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+||+.+|+++++++++|+|+.++ |...+|+.+..++.+++||++|.|.++|+ ..||+|+
T Consensus 231 ~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 231 TDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCCceeC
Confidence 99999999999999999999875 88899999999999999999999999987 7799984
No 51
>PRK08373 aspartate kinase; Validated
Probab=99.98 E-value=1.2e-30 Score=236.40 Aligned_cols=217 Identities=22% Similarity=0.297 Sum_probs=166.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c----------------
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G---------------- 82 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~---------------- 82 (267)
|..+++|.|||||++.+ .++++++.|+.. .+++++|+|+|+ |.+.+.+..+ .
T Consensus 1 ~~~~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~ 70 (341)
T PRK08373 1 MVEKMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEE 70 (341)
T ss_pred CCCCCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678999999999972 467788877743 457899999988 4333222111 0
Q ss_pred ---CC-------------------CC-CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cccchH---
Q 024480 83 ---NS-------------------GL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPY--- 132 (267)
Q Consensus 83 ---~~-------------------~l-~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~~~~--- 132 (267)
.. .+ +++..|.+..+++++++.+++.+|.++|+++.++++++.- .+....
T Consensus 71 ~~~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~ 150 (341)
T PRK08373 71 FAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDI 150 (341)
T ss_pred HHHHhccchhhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeech
Confidence 00 11 1234577778999999999999999999999988765431 111111
Q ss_pred ----HH-HHHHHHhhCCCEEEEeCCCCC--------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 133 ----IR-RRAVRHLEKGRVVIFAAGTGN--------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 133 ----~~-~~l~~ll~~g~iPIi~g~~g~--------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
.+ +.+.++++.|.|||++||.+. .+++||++|+.+|.+|+|++++|||||||||++||+.+|+|+++
T Consensus 151 ~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i 230 (341)
T PRK08373 151 KKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLI 230 (341)
T ss_pred hhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEc
Confidence 11 235578899999999998542 34689999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++++|+|+.++ |...+++.|..+|.+ ++|++|.|.++|+ .||+|....
T Consensus 231 ~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~~----------~GT~I~~~~ 281 (341)
T PRK08373 231 PYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDWR----------MGTLVSNES 281 (341)
T ss_pred ccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCCC----------CCcEEecCC
Confidence 99999999875 677779999999999 9999999987663 599997543
No 52
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=4.1e-31 Score=232.47 Aligned_cols=215 Identities=25% Similarity=0.317 Sum_probs=163.8
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cC-----CCCCCCh---HHHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GN-----SGLDRSS---ADYIGM 96 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~-----~~l~~~~---~~~~~~ 96 (267)
+||||||++++++ +.+.+++++|+.+++.|.++|||||+|++.+.+.+. +. .+++... .+...+
T Consensus 1 ~ViKlGGs~l~~~-------~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~ 73 (256)
T cd04238 1 VVIKYGGSAMKDE-------ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEM 73 (256)
T ss_pred CEEEEChHHhcCc-------cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHH
Confidence 5899999999854 467889999999988999999999999987665432 21 1222111 233333
Q ss_pred -HHHHHHHHHHHHHHHHcCCCeeEeecccccccc-c---------hH------HH-HHHHHHhhCCCEEEEeCC----CC
Q 024480 97 -LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-E---------PY------IR-RRAVRHLEKGRVVIFAAG----TG 154 (267)
Q Consensus 97 -~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~---------~~------~~-~~l~~ll~~g~iPIi~g~----~g 154 (267)
++..+|..+ .++|.++|+++.++++.+...+. + .| ++ +.+..+|++|.|||+++. .+
T Consensus 74 a~~g~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g 152 (256)
T cd04238 74 VLAGKVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDG 152 (256)
T ss_pred HHcCchHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCC
Confidence 324677776 57899999998877765532110 0 01 22 335688999999999984 12
Q ss_pred -CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHHhC
Q 024480 155 -NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQEN 226 (267)
Q Consensus 155 -~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~~~ 226 (267)
..++++|++|+++|.+|+|++|+|||||||||++ +++++++++++|+.++ .+|+| |+++|..+.++
T Consensus 153 ~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~ 226 (256)
T cd04238 153 ETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEG 226 (256)
T ss_pred cEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999986 2689999999887654 36788 89999999998
Q ss_pred CC-cEEEEcCCCCCcHHHHhcC-CCcceEE
Q 024480 227 NI-PVVVFNLNQPGNIAKAIQG-ERVGTLI 254 (267)
Q Consensus 227 Gi-~v~I~ng~~~~~i~~~l~g-~~~GT~I 254 (267)
|+ +++|+|++.|++|.++|.+ ++.||+|
T Consensus 227 g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 227 GVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred CCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 87 5999999999999999987 5689975
No 53
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=3.9e-30 Score=229.27 Aligned_cols=224 Identities=27% Similarity=0.357 Sum_probs=166.8
Q ss_pred eEEEEeccccccCCCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch----HHhhhHHhc----CCCCCCChHHH
Q 024480 25 RVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAG----NSGLDRSSADY 93 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~---~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~----~~~~~~~~~----~~~l~~~~~~~ 93 (267)
++|||+||++|..++. ...+.+.++..+++|+++.+.|++++||||+|+ +.++..... .+.++....+.
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 5899999999986542 467889999999999999999999999999995 433333221 12344444566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc--------------ch------------------------H---
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------------EP------------------------Y--- 132 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--------------~~------------------------~--- 132 (267)
.++++.+++. .+.+.|.++|++....+.++...+. .. |
T Consensus 81 ~G~ig~~~~~-al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 81 QGMIGYMLQQ-ALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hHHHHHHHHH-HHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 7788887744 4678899889876544433321000 00 1
Q ss_pred ---------HHHH-HHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 024480 133 ---------IRRR-AVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 189 (267)
Q Consensus 133 ---------~~~~-l~~ll~~g~iPIi~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~d 189 (267)
++.+ +..+|++|+|||++|..|++ ++|+|++|+++|.+++||+|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 1123 34689999999999764432 367799999999999999999999999999965
Q ss_pred CCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 190 PRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 190 P~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
| +|++++|++|+++|+.++ ++|+| |+++|..+++. +.+++|.+ ++.+.++|+|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 4 588999999999887654 46788 88888766665 56789876 67889999998 799983
No 54
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.97 E-value=6.5e-30 Score=228.86 Aligned_cols=224 Identities=21% Similarity=0.332 Sum_probs=156.7
Q ss_pred ceEEEEeccccccCCCC-C--CCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcC----CCCCCChHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-Q--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN----SGLDRSSADYIGM 96 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~--~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~----~~l~~~~~~~~~~ 96 (267)
|++|||+||++|.++++ . .++.+.++.++++|++|+++|+++|||||+|.+.... .++. ..++..+.+.+.+
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~-~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNL-LLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHH-HhccccccccCCCCcchHHHH
Confidence 68999999999997542 2 4668899999999999999999999999998865332 2221 1122223344333
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCee-----Eeecccccc--ccch-------H-------------------------
Q 024480 97 -----LATVMNAIFLQATMESIGIPTR-----VQTAFRMSE--VAEP-------Y------------------------- 132 (267)
Q Consensus 97 -----~~~~~~~~l~~~~l~~~Gi~~~-----~~~~~~~~~--~~~~-------~------------------------- 132 (267)
++..++. .+.+.|..+|++.. .|..++..| |..| |
T Consensus 80 ~~qg~lg~~~~~-~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~r 158 (310)
T TIGR00746 80 MSQGMIGYMLQQ-ALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWR 158 (310)
T ss_pred hhHHHHHHHHHH-HHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcce
Confidence 3333322 23445558886542 244444433 2110 0
Q ss_pred -----------HHHH-HHHHhhCCCE---------EEEeCCCC----CCCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 133 -----------IRRR-AVRHLEKGRV---------VIFAAGTG----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 133 -----------~~~~-l~~ll~~g~i---------PIi~g~~g----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
++.+ +..+|++|.+ ||++.+.. ..++|+|.+|+++|.+|+||+|+|+|||||||+
T Consensus 159 rvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~ 238 (310)
T TIGR00746 159 RVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYI 238 (310)
T ss_pred EeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeC
Confidence 1223 4468999984 44433211 125799999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
++ .+|++++|++++++|+.++ ++|+| |++||..+++. +.+++|++ ++.+.++++|+ .||+|.
T Consensus 239 ~~--~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 239 NY--GKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 64 3688999999999887653 46888 88999665555 56899987 68899999999 899996
No 55
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.97 E-value=3.4e-30 Score=230.42 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------cchH---HHHHHHHHh-h-CCCEEEEeCCCC----
Q 024480 91 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------AEPY---IRRRAVRHL-E-KGRVVIFAAGTG---- 154 (267)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------~~~~---~~~~l~~ll-~-~g~iPIi~g~~g---- 154 (267)
.|.+..+++++++.+++.+|++.|+++.++++++.-.. ...+ +.+.+...+ + .+.|||++||.|
T Consensus 125 ~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~ 204 (306)
T cd04247 125 KDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPG 204 (306)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCC
Confidence 35556688899999999999999999998876554111 1111 122222333 2 568999999843
Q ss_pred -----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhC
Q 024480 155 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN 226 (267)
Q Consensus 155 -----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~ 226 (267)
..+++||++|+++|..|+|+++++||||||||++||+.+|+|++|++|+|+|+.++ |...+|++++.+|.++
T Consensus 205 G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~ 284 (306)
T cd04247 205 GLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKA 284 (306)
T ss_pred CCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHc
Confidence 24689999999999999999999999999999999999999999999999998876 7889999999999999
Q ss_pred CCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 227 NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+||++|.|.++|+ ..||+|.+
T Consensus 285 ~Ipi~i~nt~~P~---------~~GT~I~~ 305 (306)
T cd04247 285 RIPIRIKNVENPR---------GEGTVIYP 305 (306)
T ss_pred CCcEEEecCCCCC---------CCCcEEcC
Confidence 9999999999987 67999975
No 56
>PRK09084 aspartate kinase III; Validated
Probab=99.97 E-value=3e-30 Score=243.06 Aligned_cols=213 Identities=22% Similarity=0.251 Sum_probs=166.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc-C-------------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-N------------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~-~------------------- 83 (267)
|+|.||||+++. +.+.++++++.|++ ++.++|+|+++ |.+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~ 70 (448)
T PRK09084 1 LVVAKFGGTSVA-------DFDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQY 70 (448)
T ss_pred CEEEEECccCcC-------CHHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 579999999998 67889999998875 46788888888 53332221110 0
Q ss_pred ---------------------------C----CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cc
Q 024480 84 ---------------------------S----GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EV 128 (267)
Q Consensus 84 ---------------------------~----~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~ 128 (267)
. .++++..|.+...++++++.++..+|+++|+++.++++.+.- .+
T Consensus 71 ~~~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~ 150 (448)
T PRK09084 71 AILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRF 150 (448)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCC
Confidence 0 122334566667889999999999999999999988765441 11
Q ss_pred cc--h---HHH----HHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 024480 129 AE--P---YIR----RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190 (267)
Q Consensus 129 ~~--~---~~~----~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP 190 (267)
.. + ... +.+.++++.+ |||++||.| ..+++||++|+++|..|+|+++++||||||||++||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 151 GRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 11 1 111 2233456777 999999843 246899999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 191 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 191 ~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+.+|+|+++++|+|+|+.++ |...+|+.+..++.++++|++|.|+++|+ ..||+|...
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999999999875 78889999999999999999999999886 679999764
No 57
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=2.9e-30 Score=226.62 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=158.6
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHH-CCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH---HHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTR-LGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA---DYIG 95 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~-~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~---~~~~ 95 (267)
+|||||||++++ .+.+++++++|+.+.. .|.++|||||+|++.+.+.+ .+. ++++.... +.+.
T Consensus 1 ~ViK~GGs~l~~-------~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~ 73 (252)
T cd04249 1 LVIKLGGALLET-------EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYIT 73 (252)
T ss_pred CEEEEChHHhcC-------hhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHH
Confidence 589999999974 3578899999998754 56899999999998765432 221 23332222 2222
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc---------c---c-hHHH-HHHHHHhhCCCEEEEeCC----CC-C
Q 024480 96 M-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV---------A---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-N 155 (267)
Q Consensus 96 ~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~---------~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g-~ 155 (267)
+ ++..+|..+++.. .++|+++.++++.+...+ . + ..++ +.+.++++.|.|||+++. .| .
T Consensus 74 ~~~~~~~n~~lv~~l-~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~ 152 (252)
T cd04249 74 GALAGTANKQLMAQA-IKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQL 152 (252)
T ss_pred HHHcCcccHHHHHHH-HhCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCE
Confidence 2 2356777777544 579999988776643211 0 0 0122 335678999999999984 22 3
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHHhCC-
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENN- 227 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~~~G- 227 (267)
.++++|++|+++|..|+|+ ++|+|||||||++|| ++|++++++|+.++ .+++| |++++..+++.+
T Consensus 153 ~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~ 225 (252)
T cd04249 153 MNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLR 225 (252)
T ss_pred eeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCC
Confidence 4689999999999999999 789999999998764 68999999887664 36788 788887776664
Q ss_pred CcEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 228 IPVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 228 i~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
++++|+|++.|+.+.++|+|+..||+|
T Consensus 226 ~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 226 RGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred CeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 689999999999999999999999986
No 58
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=3.5e-30 Score=226.51 Aligned_cols=206 Identities=23% Similarity=0.354 Sum_probs=157.1
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC--------CCC--CCC---hH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN--------SGL--DRS---SA 91 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~--------~~l--~~~---~~ 91 (267)
+|||||||++++ +++++++|+.+ |.++|||||||++.+... +.+. .|+ +.+ ..
T Consensus 1 ~VIKlGGs~l~~----------~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l 67 (257)
T cd04251 1 IVVKIGGSVVSD----------LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETL 67 (257)
T ss_pred CEEEEChHHhhC----------hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHH
Confidence 589999999983 25788999887 889999999999876543 2221 132 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc-------------------cchH------HH-HHHHHHhhCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-------------------AEPY------IR-RRAVRHLEKGR 145 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-------------------~~~~------~~-~~l~~ll~~g~ 145 (267)
+.+.+..+.+|..++ +.|.++|+++.++++.+...+ +..| ++ +.+..+|++|+
T Consensus 68 ~~~~~a~~~ln~~iv-~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~ 146 (257)
T cd04251 68 EVFVMVMGLINKKIV-ARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGY 146 (257)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCC
Confidence 333444477888766 599999999988776543110 0001 23 33567899999
Q ss_pred EEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--
Q 024480 146 VVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM-- 215 (267)
Q Consensus 146 iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m-- 215 (267)
|||++++ .|. .++++|++|+++|.+|+|++|+|+|||||||++ ++++++++++|+.++ .+++|
T Consensus 147 vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~ 219 (257)
T cd04251 147 LPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKR 219 (257)
T ss_pred eEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHH
Confidence 9999985 222 358999999999999999999999999999973 679999999887765 36788
Q ss_pred hHHHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 216 DMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 216 k~~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
|++++..+.++|++ ++|++++.|+++.++|.|+ ||+|
T Consensus 220 Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 220 KLLAAAEAVEGGVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 99999999999994 9999999999999999875 9975
No 59
>PRK09034 aspartate kinase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=239.35 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=166.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ch-------HHhhhHHhcC-------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGASAAGN------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~-------~~~~~~~~~~------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+ ++.++|+|+++ |. +.+.+..+..
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~ii~~---~~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~~~~~~~~~ 70 (454)
T PRK09034 1 MKVVKFGGSSLA-------SAEQFKKVLNIVKS---DPERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAGEDYEDIFE 70 (454)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHhc---cCCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcCCcHHHHHH
Confidence 469999999998 56788888888864 35678888887 31 3332211100
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA 129 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~ 129 (267)
...+++..|.+...++++++.+++.+|++.|+++.++++++.+.+.
T Consensus 71 ~~~~~~~~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t 150 (454)
T PRK09034 71 AIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIV 150 (454)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEe
Confidence 0112234466677889999999999999999999988876653221
Q ss_pred c-hH--------HHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 024480 130 E-PY--------IRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 191 (267)
Q Consensus 130 ~-~~--------~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~ 191 (267)
. .+ ..+.+.+.+..+.|||++||.| ..++++|+.|+++|.+|+|+.+.+||||||||++||+
T Consensus 151 ~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr 230 (454)
T PRK09034 151 TDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPR 230 (454)
T ss_pred cCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCC
Confidence 1 11 0122344555778999999843 2468999999999999999999999999999999999
Q ss_pred CCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 192 RNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 192 ~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.+|+|++++++||+|+.++ |...||++|+.+|.+++||++|.|.++|+ ..||+|..+
T Consensus 231 ~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~---------~~GT~I~~~ 290 (454)
T PRK09034 231 IVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPE---------DPGTLIVPD 290 (454)
T ss_pred CCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCC---------CCccEEEec
Confidence 9999999999999999885 88999999999999999999999999886 679999754
No 60
>PRK05925 aspartate kinase; Provisional
Probab=99.97 E-value=1e-29 Score=238.10 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=165.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G------------------ 82 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~------------------ 82 (267)
|.++|.||||+++. +.+.++++++.|.+ . .++++|+++ |.+.+.+..+ .
T Consensus 1 ~~~~V~KFGGtSv~-------~~e~i~~v~~ii~~---~-~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~i~~~~~ 69 (440)
T PRK05925 1 MAPLVYKFGGTSLG-------TAESIRRVCDIICK---E-KPSFVVVSAVAGVTDLLEEFCRLSKGKREALTEKIREKHE 69 (440)
T ss_pred CCcEEEEECccccC-------CHHHHHHHHHHHhc---C-CCEEEEECCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45789999999998 56788888888864 2 467777778 4333222110 0
Q ss_pred ----C--------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccc--------
Q 024480 83 ----N--------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------- 130 (267)
Q Consensus 83 ----~--------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~-------- 130 (267)
. ..+++...|.+..+++++++.+++.+|++.|+++.++++++......
T Consensus 70 ~~~~~l~~~~~~~~~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~ 149 (440)
T PRK05925 70 EIAKELGIEFSLSPWWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPD 149 (440)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccC
Confidence 0 01123344556678899999999999999999999887755421111
Q ss_pred -hHHHHHHHH-HhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 131 -PYIRRRAVR-HLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 131 -~~~~~~l~~-ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
....+.+.+ .++.+.|||++||.| ..+++||++|+++|.+++|+.|++||||||||++||+.+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i 229 (440)
T PRK05925 150 LALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLI 229 (440)
T ss_pred HHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEe
Confidence 112233333 345778999999843 257999999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
++++|+|+.++ |...+++.++++|.++|+|++|.|+++|+ +.||+|.+.
T Consensus 230 ~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 230 PELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred eEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCC---------CCccEEecC
Confidence 99999998876 77788999999999999999999999987 579999764
No 61
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.97 E-value=7.7e-30 Score=216.78 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=151.5
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIF 105 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l 105 (267)
|||+|||++. + +..+.+.++++. |++++||.|||.|++.++... ..|+++...|+++++++++|+.+
T Consensus 1 vvKiGGsl~~-------~---~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~ 68 (203)
T cd04240 1 VVKIGGSLIR-------E---AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYL 68 (203)
T ss_pred CEEEcccccc-------c---HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 7999999865 2 345555565543 789999999999987765432 36788889999999999999976
Q ss_pred HHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC------C---CCCCCCcHHHHHHHHHhcCCcEE
Q 024480 106 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 176 (267)
Q Consensus 106 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~L 176 (267)
++..+...+.. ...++..+++.|.+||+.+. . ..+++++|++|+++|..|+|++|
T Consensus 69 l~~~~~~~~~~----------------~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~L 132 (203)
T cd04240 69 LADLEPRLVAR----------------TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRL 132 (203)
T ss_pred HhccCCccccC----------------CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEE
Confidence 64222211100 01245678899999999985 1 13569999999999999999999
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC-CcceEE
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 254 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~-~~GT~I 254 (267)
+++|||||||++| ++++++++..|+.. .+.|+..+++.+.++|++++|+|+++|+++.+++.|+ .+||+|
T Consensus 133 i~ltdVdGVy~~d------a~~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 133 VIVTDVDGIYEKD------GKLVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred EEEeCCccccCCC------CcCccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 9999999999864 78999999887653 5667776778889999999999999999999999998 789975
No 62
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.97 E-value=1.2e-29 Score=220.78 Aligned_cols=202 Identities=27% Similarity=0.383 Sum_probs=146.1
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCCh------HHH----
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS------ADY---- 93 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~------~~~---- 93 (267)
|++|||||||+++++ +.+ +.+++++|+.+.+.|+++|||||+|.+++.+... +++.+.. .+.
T Consensus 1 k~~ViK~GGs~l~~~-----~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~ 72 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDK-----DEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGL 72 (242)
T ss_dssp SEEEEEE-HHGHSSH-----SHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHH
T ss_pred CeEEEEECchhhCCc-----hHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhH
Confidence 689999999999953 125 9999999999999999999999999988776543 2232211 110
Q ss_pred -H-HHHHHHHHH-----HHHHHHHHHcCCCeeEeeccccccccc-----hHHHHHHHHHhhCCCEEEEeCCC-----CC-
Q 024480 94 -I-GMLATVMNA-----IFLQATMESIGIPTRVQTAFRMSEVAE-----PYIRRRAVRHLEKGRVVIFAAGT-----GN- 155 (267)
Q Consensus 94 -~-~~~~~~~~~-----~l~~~~l~~~Gi~~~~~~~~~~~~~~~-----~~~~~~l~~ll~~g~iPIi~g~~-----g~- 155 (267)
. ..+...++. .+ ...+..++..+....+.+.+.... ....+.+.++|++|.|||++|+. |.
T Consensus 73 ~~~~~~~~~l~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~ 151 (242)
T PF00696_consen 73 IITMAAAAELNRDALLDEI-VSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEV 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTE
T ss_pred HHHHHHhhccccchhHHHH-HHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCc
Confidence 1 112222333 33 356777787766444333211110 11234467889999999999862 32
Q ss_pred ---CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcC------CCcc--hHHHH-HHH
Q 024480 156 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD------LSVM--DMTAI-TLC 223 (267)
Q Consensus 156 ---~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg------~g~m--k~~aa-~~a 223 (267)
+++++|++|+++|.+|+|++|+|||||||||++||+.+|+++++++|+++|+.++. +++| |+.++ +.+
T Consensus 152 ~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~ 231 (242)
T PF00696_consen 152 TTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAA 231 (242)
T ss_dssp EEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999998764 7788 44554 555
Q ss_pred HhCCCcEEEEc
Q 024480 224 QENNIPVVVFN 234 (267)
Q Consensus 224 ~~~Gi~v~I~n 234 (267)
.+++++++|+|
T Consensus 232 ~~~~~~v~I~n 242 (242)
T PF00696_consen 232 EEGGIPVHIIN 242 (242)
T ss_dssp HHTTSEEEEEE
T ss_pred HcCCCcEEEeC
Confidence 55688999986
No 63
>PLN02551 aspartokinase
Probab=99.97 E-value=3.1e-29 Score=238.89 Aligned_cols=219 Identities=23% Similarity=0.274 Sum_probs=168.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh----cC------------
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA----GN------------ 83 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~----~~------------ 83 (267)
++.-++|.||||+++. +.+.++++++.|.+.. ..++|+|+++ |.+.+.+..+ ..
T Consensus 49 ~~~~~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~--~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l 119 (521)
T PLN02551 49 EKQLTVVMKFGGSSVA-------SAERMREVADLILSFP--DERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEEL 119 (521)
T ss_pred ccCceEEEEECCCccC-------CHHHHHHHHHHHHhcC--CCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHH
Confidence 3344579999999998 6789999999888643 2457777777 4332222110 00
Q ss_pred --------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc
Q 024480 84 --------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM 125 (267)
Q Consensus 84 --------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~ 125 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.
T Consensus 120 ~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~ 199 (521)
T PLN02551 120 SAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDI 199 (521)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHc
Confidence 012233456677788999999999999999999998887665
Q ss_pred ccc-----cchHH----HHHHHH----Hh-hCCCEEEEeCCCCC----------CCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 126 SEV-----AEPYI----RRRAVR----HL-EKGRVVIFAAGTGN----------PFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 126 ~~~-----~~~~~----~~~l~~----ll-~~g~iPIi~g~~g~----------~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
+.+ ....+ .+.+.+ .+ +.+.|||++||.|. .+++||+.|+.+|.+|+|+++.+|||
T Consensus 200 gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tD 279 (521)
T PLN02551 200 GFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKD 279 (521)
T ss_pred ceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeC
Confidence 321 11111 122222 22 35689999998441 36899999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||+.||+.+|+|++++++||+|+.++ |...+|+++..+|.+++||++|.|.++|+ ..||+|...
T Consensus 280 V~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 280 VDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred CCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence 99999999999999999999999999886 89999999999999999999999999886 679999754
No 64
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.96 E-value=1.2e-28 Score=222.17 Aligned_cols=209 Identities=22% Similarity=0.309 Sum_probs=153.0
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh--------------------cC
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA--------------------GN 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~--------------------~~ 83 (267)
|+|+|||||++.+ .++++++.|....+ +.++++|+|| |.+.+.+..+ ..
T Consensus 1 m~V~KFGGsSv~~---------~~~~v~~ii~~~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~ 70 (327)
T TIGR02078 1 MIVVKFGGSSVRY---------AFEEALELVKSLSE-EKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKE 70 (327)
T ss_pred CEEEEECCcchHH---------HHHHHHHHHHHHhc-CCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999972 37888888876543 6788988888 3222211100 00
Q ss_pred CCC-------------------CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc----cccc-----hH--H
Q 024480 84 SGL-------------------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PY--I 133 (267)
Q Consensus 84 ~~l-------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----~~~~-----~~--~ 133 (267)
.+. ++...|.+..+++++++.++. .|+++.++++++.- .+.+ +. .
T Consensus 71 L~~~~~~~~~~l~~~~~~~~l~~~~~~d~I~s~GE~lSa~Lla-----~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~ 145 (327)
T TIGR02078 71 LGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSAVIFA-----EGINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145 (327)
T ss_pred hccchhhhHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHH-----ccCCcEEEcHHHHhccCCcCCceeechhhhHh
Confidence 111 122456677788887876654 47887776654431 1111 11 1
Q ss_pred H-HHHHHHhhCCCEEEEeCCCCC--------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH
Q 024480 134 R-RRAVRHLEKGRVVIFAAGTGN--------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 204 (267)
Q Consensus 134 ~-~~l~~ll~~g~iPIi~g~~g~--------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~ 204 (267)
+ +.+.++++.|.|||++||.+. .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|
T Consensus 146 ~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy 225 (327)
T TIGR02078 146 NAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSY 225 (327)
T ss_pred hHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCH
Confidence 1 234567889999999998542 3468999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 205 QEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 205 ~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+|+.++ |...+|+.|++++.++|+|++|.|.++|. .||+|....
T Consensus 226 ~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~----------~GT~I~~~~ 272 (327)
T TIGR02078 226 EEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR----------MGTLISNRS 272 (327)
T ss_pred HHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC----------CCcEEecCC
Confidence 998765 66677999999999999999999998763 599997543
No 65
>PRK12686 carbamate kinase; Reviewed
Probab=99.96 E-value=2.8e-28 Score=217.48 Aligned_cols=226 Identities=19% Similarity=0.276 Sum_probs=161.2
Q ss_pred cceEEEEeccccccCCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhH-Hh--cCCCCCCChHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT-QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GAS-AA--GNSGLDRSSADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~-~~--~~~~l~~~~~~~~~~~ 97 (267)
|+++|||+||+++.+.+. .+...+.++..+++|+.|.+.|+++||+||+|++.- .+. .. .....+..++|.+.+.
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 678999999999987542 334566889999999999999999999999998542 211 11 1112455677776654
Q ss_pred HH-----HHHHHHHHHHHHHcCCCeeE-----eecccccc---------------------------------ccchH--
Q 024480 98 AT-----VMNAIFLQATMESIGIPTRV-----QTAFRMSE---------------------------------VAEPY-- 132 (267)
Q Consensus 98 ~~-----~~~~~l~~~~l~~~Gi~~~~-----~~~~~~~~---------------------------------~~~~~-- 132 (267)
.. .++.. +.+.|..+++.... +...+..| ..+.|
T Consensus 82 sqg~iGy~~~q~-l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rr 160 (312)
T PRK12686 82 SQGMIGYWLQNA-LNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR 160 (312)
T ss_pred ccchhhHHHHHH-HHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEE
Confidence 43 23332 34566666654221 22222111 00011
Q ss_pred ----------HHHH-HHHHhhCCCEEEEeCCCC------------C-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 024480 133 ----------IRRR-AVRHLEKGRVVIFAAGTG------------N-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 188 (267)
Q Consensus 133 ----------~~~~-l~~ll~~g~iPIi~g~~g------------~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~ 188 (267)
++.+ +..+|++|+|||.+|..| . .++|+|.+|++||.+|+||+|+|+|||||||++
T Consensus 161 vV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~ 240 (312)
T PRK12686 161 VVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN 240 (312)
T ss_pred eeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC
Confidence 2334 457899999988775311 1 267999999999999999999999999999985
Q ss_pred CCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhC--CCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 189 NPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 189 dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~--Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|. +|++++|++++.+|+.++ ++|+| |++||..+.+. |.+++|++ ++.+.++|+|+ .||+|.
T Consensus 241 -~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 -FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred -CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 54 578999999999887654 46889 99999998865 56788887 68888999998 799995
No 66
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.96 E-value=1.4e-28 Score=244.86 Aligned_cols=216 Identities=22% Similarity=0.210 Sum_probs=165.8
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC-----------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN----------------- 83 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~----------------- 83 (267)
|++.|.||||+++. +.+.++++++.|.+..+.+ +++|+++ |.+.+.+..+ ..
T Consensus 10 M~~~V~KFGGtSv~-------~~e~i~~v~~iI~~~~~~~--~vVVVSA~~~~Td~L~~~~~~~~~~~~~~~~~l~~i~~ 80 (810)
T PRK09466 10 MGRQLHKFGGSSLA-------DAKCYRRVAGILAEYSQPD--DLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQQTLRR 80 (810)
T ss_pred ceeEEEEECccccC-------CHHHHHHHHHHHhhhccCC--EEEEEcCCCCCHHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 45789999999998 6789999999888654433 5666667 4332221110 00
Q ss_pred ----------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccc--
Q 024480 84 ----------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-- 127 (267)
Q Consensus 84 ----------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~-- 127 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++++.-.
T Consensus 81 ~h~~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~ 160 (810)
T PRK09466 81 YQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAE 160 (810)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecC
Confidence 00122334555568889999999999999999999887654311
Q ss_pred -ccchH-----HHHHHHHHhhC--CCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 024480 128 -VAEPY-----IRRRAVRHLEK--GRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 190 (267)
Q Consensus 128 -~~~~~-----~~~~l~~ll~~--g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP 190 (267)
..... ..+.+.+.+.. +.+||++||.| ..+++||++|+.+|.+|+|+++.+||||||||++||
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDP 240 (810)
T PRK09466 161 RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADP 240 (810)
T ss_pred CCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCc
Confidence 10111 12334455543 47999999844 246899999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 191 RRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 191 ~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|.+|+|+++++|||+|+.++ |...+|+++..+|.+++||++|.|.++|+ ..||+|..
T Consensus 241 r~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred ccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEec
Confidence 99999999999999999875 89999999999999999999999999886 67999975
No 67
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=213.42 Aligned_cols=227 Identities=24% Similarity=0.355 Sum_probs=162.8
Q ss_pred cceEEEEeccccccCCCC-CCCC--HHHHHHHHHHHHHHHHCCCeEEEEECCch----HHhhhHHhcCCCCCCChHHHH-
Q 024480 23 WQRVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSGLDRSSADYI- 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~~~--~~~l~~l~~~I~~l~~~g~~vViVhGgG~----~~~~~~~~~~~~l~~~~~~~~- 94 (267)
|+++||++||++|...+. .+.. .+.++..+++|+++.++|++++|+||+|+ +..+.......+.+..+.|.+
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 479999999999987543 2222 35899999999999999999999999998 333333332113444455543
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCCeeEeecccc-----cc--ccc-------------------------------hH
Q 024480 95 ----GMLATVMNAIFLQATMESIGIPTRVQTAFRM-----SE--VAE-------------------------------PY 132 (267)
Q Consensus 95 ----~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-----~~--~~~-------------------------------~~ 132 (267)
++++..++.. +.+.|..+|++....+.++. .| |.. .|
T Consensus 82 a~sqG~igy~l~~a-l~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~ 160 (313)
T PRK12454 82 AMTQGWIGYMIQQA-LRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGW 160 (313)
T ss_pred hhhhHHHHHHHHHH-HHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCce
Confidence 4455555443 46788888986544443332 11 000 00
Q ss_pred ------------HHHH-HHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccc
Q 024480 133 ------------IRRR-AVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVY 186 (267)
Q Consensus 133 ------------~~~~-l~~ll~~g~iPIi~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy 186 (267)
++.+ +..+|++|.|||++|..|.+ ++|+|.+|+++|.+|+||+|+|+|||||||
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy 240 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY 240 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceee
Confidence 1223 45789999999999754322 357899999999999999999999999999
Q ss_pred cCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCC-CcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 187 DDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 187 ~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~G-i~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
++ |. +|++++|++++.+|+.++ .+|+| |+++|..+.+.| .+++|++ ++.+.++|+|+ .||+|.+
T Consensus 241 ~~-~~-~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 241 LN-YG-KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CC-CC-CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 86 32 578999999999887653 36778 889997766665 5799985 67888999998 7999963
No 68
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=9.8e-28 Score=213.31 Aligned_cols=220 Identities=21% Similarity=0.309 Sum_probs=159.0
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||+++.++ .+++++++|+.+.+.|+++|||||||++... +.+.+. .|++.++.
T Consensus 14 ~~~~~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~ 85 (280)
T cd04237 14 NAHRGKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAA 85 (280)
T ss_pred HHhCCCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHH
Confidence 34567899999999999742 4578999999999999999999999987654 333332 24433332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeEee-----ccc-----cc--------cc---cc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRVQT-----AFR-----MS--------EV---AE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~-----~~--------~~---~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+....++..+ .+.|+ .|+++.+++ ..+ .. ++ ++ ..++.+ +..+|++|++
T Consensus 86 ~l~~~~~~~g~v~~~l-~~~l~-~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~i 163 (280)
T cd04237 86 ALECVKEAAGAVRLEI-EALLS-MGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSI 163 (280)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-hhccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCE
Confidence 22333334456554 45665 366654221 111 00 00 00 012333 5578999999
Q ss_pred EEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C---CCcc
Q 024480 147 VIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM 215 (267)
Q Consensus 147 PIi~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g---~g~m 215 (267)
||+++. .|.. ++++|.+|+.||.+|+|++|+|+|||||||++ +++++++++.+|+.++ + +++|
T Consensus 164 pv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM 237 (280)
T cd04237 164 VLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDT 237 (280)
T ss_pred EEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCH
Confidence 999973 2333 47999999999999999999999999999974 3689999998887764 2 6889
Q ss_pred --hHHHHHHHHhCCC-cEEEEcCCCCCcHH-HHhcCCCcceEE
Q 024480 216 --DMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 216 --k~~aa~~a~~~Gi-~v~I~ng~~~~~i~-~~l~g~~~GT~I 254 (267)
|+++|..+.+.|+ +++|++++.|+.+. +++..++.||+|
T Consensus 238 ~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 238 ARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 8999999999999 59999999999887 577788889975
No 69
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.96 E-value=5.3e-28 Score=209.63 Aligned_cols=193 Identities=22% Similarity=0.278 Sum_probs=143.8
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcC-----CCCCCChH---HHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA---DYIG 95 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~-----~~l~~~~~---~~~~ 95 (267)
++||||||+++++ . +.+++++|+.+++.|.++|||||+|++.+.+. .++. .+++.... +...
T Consensus 1 ~~ViK~GGs~l~~-------~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~ 71 (231)
T TIGR00761 1 TIVIKIGGAAISD-------L--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVE 71 (231)
T ss_pred CEEEEEChHHHhc-------c--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHH
Confidence 5899999999984 1 78999999999999999999999998776543 2221 12222221 2222
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCeeEeeccccccc-----c---ch------HHH-HHHHHHhhCCCEEEEeCC----CC-
Q 024480 96 M-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----A---EP------YIR-RRAVRHLEKGRVVIFAAG----TG- 154 (267)
Q Consensus 96 ~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~-----~---~~------~~~-~~l~~ll~~g~iPIi~g~----~g- 154 (267)
+ +++.+|..++ ++|.++|+++.++++.+...+ . .+ .++ +.+.+++++|+|||++|+ .|
T Consensus 72 ~~~~g~~~~~i~-~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~ 150 (231)
T TIGR00761 72 MVLIGQVNKELV-ALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQ 150 (231)
T ss_pred HHHhcchHHHHH-HHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCc
Confidence 2 3446787666 589999999987765542111 0 00 123 345688999999999995 12
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C--CCcc--hHHHHHHHHhCC
Q 024480 155 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENN 227 (267)
Q Consensus 155 ~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g--~g~m--k~~aa~~a~~~G 227 (267)
..++++|++|+.+|.+|+|++|+|||||||||++||+ ++|++|+++|+.++ + +++| |+++|..+.+.|
T Consensus 151 ~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~g 225 (231)
T TIGR00761 151 ALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGG 225 (231)
T ss_pred EEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcC
Confidence 2358999999999999999999999999999998773 69999999887664 3 7888 899999999999
Q ss_pred Cc-EEE
Q 024480 228 IP-VVV 232 (267)
Q Consensus 228 i~-v~I 232 (267)
++ ++|
T Consensus 226 v~~v~i 231 (231)
T TIGR00761 226 VKSVHI 231 (231)
T ss_pred CCEEEC
Confidence 97 554
No 70
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.96 E-value=8.2e-28 Score=225.96 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=161.7
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||++++++ .+..++++|+.|...|.++|||||||+..+. +...+. .|++.+..
T Consensus 13 ~~~~~~~~ViK~GG~~~~~~--------~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~ 84 (429)
T TIGR01890 13 NAHRGKTFVVGLGGELVEGG--------NLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEA 84 (429)
T ss_pred HHhCCCEEEEEEChhhccCc--------cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHH
Confidence 45788999999999999753 2358999999999999999999999986544 333332 34544433
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeE-----eeccccc-------------c---ccc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRV-----QTAFRMS-------------E---VAE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~-----~~~~~~~-------------~---~~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+++..+|..+. +.|++. +++.+ ++..+.. + .++ ..++.+ +..+|+.|+|
T Consensus 85 ~l~~~~~~~g~vn~~l~-~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~i 162 (429)
T TIGR01890 85 SLEQAQQAAGTLRLAIE-ARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSI 162 (429)
T ss_pred HHHHHHHHhChHHHHHH-HHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCe
Confidence 334445556777655 566655 33222 1111110 1 111 013444 4578999999
Q ss_pred EEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCc-c--
Q 024480 147 VIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSV-M-- 215 (267)
Q Consensus 147 PIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~-m-- 215 (267)
||+++. .|. .++|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++|+.+|+.++ ..++ |
T Consensus 163 pvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~ 236 (429)
T TIGR01890 163 VLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRR 236 (429)
T ss_pred EEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHH
Confidence 999983 232 458999999999999999999999999999963 2679999998877654 1233 3
Q ss_pred hHHHHHHHHhCCC-cEEEEcCCCCCcHHH-HhcCCCcceEEecCC
Q 024480 216 DMTAITLCQENNI-PVVVFNLNQPGNIAK-AIQGERVGTLIGGTW 258 (267)
Q Consensus 216 k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~-~l~g~~~GT~I~~~~ 258 (267)
|++++..|.+.|+ +++|+|++.|+++.. ++..++.||+|..+.
T Consensus 237 kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 237 LLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 8999999999998 599999999999875 567788899998754
No 71
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=241.69 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=167.1
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-c------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-G------------------ 82 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~------------------ 82 (267)
|+++|.||||+++. +.+.++++++.|++..+++.++|+|+|+ |.+.+.+..+ .
T Consensus 7 ~~~~V~KFGGtSv~-------~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~ 79 (861)
T PRK08961 7 DRWVVLKFGGTSVS-------RRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQRH 79 (861)
T ss_pred CCcEEEEECccccC-------CHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 57889999999998 5678999999998766678888888888 4333222111 0
Q ss_pred -----CCC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccccccc--
Q 024480 83 -----NSG--------------------------LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-- 129 (267)
Q Consensus 83 -----~~~--------------------------l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-- 129 (267)
..+ ++++..+.+...++++++.+++.+|++.|+++.++++.+.....
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~ 159 (861)
T PRK08961 80 RELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQ 159 (861)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCc
Confidence 000 11222233335778899999999999999999988765431111
Q ss_pred ------chH--------HHHHHH-HHhhCC-CEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 130 ------EPY--------IRRRAV-RHLEKG-RVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 130 ------~~~--------~~~~l~-~ll~~g-~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
.++ .+..+. .+++.+ .|||++||.| ..+++||++|+.+|.+|+|++|++||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~G 239 (861)
T PRK08961 160 PNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPG 239 (861)
T ss_pred cccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 011 122233 344444 5999999844 247899999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
||++||+.+|+++++++++++|+.++ |...+|++|+++|.++||+++|.|+++|+ ..||+|..+
T Consensus 240 v~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 240 MFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred cccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCC---------CCccEEeCC
Confidence 99999999999999999999998875 67788999999999999999999999885 579999754
No 72
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.95 E-value=2.5e-27 Score=237.08 Aligned_cols=216 Identities=25% Similarity=0.293 Sum_probs=165.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhc----C----------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG----N---------------- 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~----~---------------- 83 (267)
|.|.||||+++. +.+.++++++.|.+..+. .++|+|+|+ |.+.+.+..+- .
T Consensus 1 m~V~KFGGtSv~-------~~~~i~~v~~iI~~~~~~-~~~vVVVSA~~~vTd~L~~~~~~~~~~~~~~~~~~~~~~~~h 72 (819)
T PRK09436 1 MRVLKFGGTSVA-------NAERFLRVADIIESNARQ-EQVAVVLSAPAKVTNHLVAMIEKAAKGDDAYPEILDAERIFH 72 (819)
T ss_pred CEEEEeCccccC-------CHHHHHHHHHHHHhhccc-CCEEEEEcCCcCcHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 469999999998 678999999999876544 577888878 43322221100 0
Q ss_pred ---------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccc
Q 024480 84 ---------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR 124 (267)
Q Consensus 84 ---------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~ 124 (267)
..++++..|.+..+++++++.+++.+|++.|+++.++++.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~ 152 (819)
T PRK09436 73 ELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE 152 (819)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHH
Confidence 00112223445567889999999999999999999887644
Q ss_pred ccc----ccc-----hHHHHHHHHHh-hCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 125 MSE----VAE-----PYIRRRAVRHL-EKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 125 ~~~----~~~-----~~~~~~l~~ll-~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
.-. +.+ ....+.+.+++ +.+.|||++||.+ ..+++||++|+++|.+|+|+.|++|||||||
T Consensus 153 ~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGv 232 (819)
T PRK09436 153 LLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGV 232 (819)
T ss_pred eEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCce
Confidence 311 111 11223344444 4688999999843 1467899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|++||+.+|+|++|++++|+|+.++ |+..+|++|+.+|.++|||++|.|+++|+ ..||+|...
T Consensus 233 yt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 233 YTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCC---------CCceEEEec
Confidence 9999999999999999999998875 88889999999999999999999999887 679999764
No 73
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.95 E-value=1.9e-26 Score=206.85 Aligned_cols=226 Identities=18% Similarity=0.236 Sum_probs=158.6
Q ss_pred ceEEEEeccccccCCCC-CCC--CHHHHHHHHHHHHHHHHCCCeEEEEECCchHH-hhhHHhcC----CCCCCChHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-QNI--DPKITMAIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN----SGLDRSSADYIG 95 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~~~--~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~-~~~~~~~~----~~l~~~~~~~~~ 95 (267)
|++|||+||+++.+++. .++ ..+.+..++++|+.|+..|+++|||||+|++. ..+.+.+. .|++..+.+...
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v 82 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCV 82 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHH
Confidence 69999999999976431 222 33688999999999999999999999999854 33333221 245555555322
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCCee-------Eeecccc---------c----------------cc------cch-
Q 024480 96 -----MLATVMNAIFLQATMESIGIPTR-------VQTAFRM---------S----------------EV------AEP- 131 (267)
Q Consensus 96 -----~~~~~~~~~l~~~~l~~~Gi~~~-------~~~~~~~---------~----------------~~------~~~- 131 (267)
.++..+++.|. +.|..+|..+. .++..+. + +. .+.
T Consensus 83 ~~~~g~i~~~i~~~L~-~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 83 ADTQGGIGYLIQQALN-NRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 23345666544 67777774421 1121110 0 00 000
Q ss_pred -----------HHHHH-HHHHhhCCCE---------EEEeCCCCC-----CCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 -----------YIRRR-AVRHLEKGRV---------VIFAAGTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 -----------~~~~~-l~~ll~~g~i---------PIi~g~~g~-----~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
.++.+ +..+|++|+| ||+.+..+. .++|+|.+|+.+|.+|+||+|+|+|||+||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 12334 4578999999 444432221 237899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc---C---CCcc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l---g---~g~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|.++| +|++++|++++..|+.++ | .++| |+++|..+++.|+ +++|++ ++.+.++|+|+ .||+|..
T Consensus 242 ~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 98765 367789999999987764 2 4678 8999988888888 599996 77899999998 8999964
No 74
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.95 E-value=7.6e-27 Score=220.19 Aligned_cols=223 Identities=20% Similarity=0.293 Sum_probs=160.4
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChH-
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA- 91 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~- 91 (267)
+.++.+++|||+||+++.++ .+.+++++|+.+.+.|.++|||||||+.... +.+.+. .|++.+..
T Consensus 21 ~~~~~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~ 92 (441)
T PRK05279 21 NAHRGKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAA 92 (441)
T ss_pred HHhCCCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHH
Confidence 34667899999999999753 3578999999999999999999999986544 333332 34433332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCeeEeec-----cccc-------------c---ccc-hHHHHH-HHHHhhCCCE
Q 024480 92 --DYIGMLATVMNAIFLQATMESIGIPTRVQTA-----FRMS-------------E---VAE-PYIRRR-AVRHLEKGRV 146 (267)
Q Consensus 92 --~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~-----~~~~-------------~---~~~-~~~~~~-l~~ll~~g~i 146 (267)
+...+....+|..+ .+.|+ .|+++.++.+ .+.. + .++ ..++.+ +..+|++|+|
T Consensus 93 ~l~~~~~~~g~v~~~l-~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~i 170 (441)
T PRK05279 93 ALECVKQAAGELRLDI-EARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAI 170 (441)
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCe
Confidence 22333333456654 45665 5877654221 1100 0 010 012333 4578999999
Q ss_pred EEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc------C--CC
Q 024480 147 VIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------D--LS 213 (267)
Q Consensus 147 PIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l------g--~g 213 (267)
||+++. .|. .++|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+.++ + +|
T Consensus 171 pV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~g 244 (441)
T PRK05279 171 VLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNS 244 (441)
T ss_pred EEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCc
Confidence 999873 222 357999999999999999999999999999963 3689999998877643 1 57
Q ss_pred cc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHh-cCCCcceEEecC
Q 024480 214 VM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAI-QGERVGTLIGGT 257 (267)
Q Consensus 214 ~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l-~g~~~GT~I~~~ 257 (267)
+| |++++..+.++|+ +++|++++.|+++...| ..++.||+|..+
T Consensus 245 gM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 245 GTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 88 8999999999999 59999999999998655 445689999875
No 75
>PRK12354 carbamate kinase; Reviewed
Probab=99.95 E-value=2.8e-26 Score=203.86 Aligned_cols=227 Identities=23% Similarity=0.285 Sum_probs=152.8
Q ss_pred eEEEEeccccccCCCC-CCCC--HHHHHHHHHHHHHHHHCCCeEEEEECCchH-HhhhHHhcCCC-CCCChHHHHHH---
Q 024480 25 RVLLKVSGEALAGDHT-QNID--PKITMAIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGNSG-LDRSSADYIGM--- 96 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~-~~~~--~~~l~~l~~~I~~l~~~g~~vViVhGgG~~-~~~~~~~~~~~-l~~~~~~~~~~--- 96 (267)
++|||+||++|.+++. .+.. .+.+++.+++|+++.+ |+++||+||+|++ +..+.....+. .+..+.+.+.+
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq 80 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE 80 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc
Confidence 6899999999998763 4555 4589999999999988 8999999999996 53322221111 13344554332
Q ss_pred --HHHHHHHHHHHHHHHHcCCCeeE-eecccccc---------c-----------------------cc----------h
Q 024480 97 --LATVMNAIFLQATMESIGIPTRV-QTAFRMSE---------V-----------------------AE----------P 131 (267)
Q Consensus 97 --~~~~~~~~l~~~~l~~~Gi~~~~-~~~~~~~~---------~-----------------------~~----------~ 131 (267)
.+..++.. +.+.|....+.+.. +..++.+| + .+ |
T Consensus 81 g~iGy~l~q~-l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 81 GMIGYMLEQE-LGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred chHHHHHHHH-HHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 22223322 23445433333221 22222111 0 00 0
Q ss_pred --HHHHH-HHHHhhCCCEEEEeC---------CCC-----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 024480 132 --YIRRR-AVRHLEKGRVVIFAA---------GTG-----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 194 (267)
Q Consensus 132 --~~~~~-l~~ll~~g~iPIi~g---------~~g-----~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~ 194 (267)
.++.+ +..+|++|+|||.+| +.+ ..++|+|.+|+.||.+|+||+|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 01223 457899999755543 212 125799999999999999999999999999999753 57
Q ss_pred CcccccccCHHHHhhc--CCCcc--hHHHHHHHHhC-CCcEEEEcCCCCCcHHHHhcCCCcceEEecCCC
Q 024480 195 NARLLDTLTYQEVTSK--DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 195 ~a~li~~Is~~e~~~l--g~g~m--k~~aa~~a~~~-Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~ 259 (267)
++++|++++.+|+.++ .+|+| |++||..+++. +.+++|.+ ++.+.++|.|+ .||+|.+...
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence 8899999999988765 57888 99999776665 44688853 56788999987 7999987544
No 76
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.95 E-value=1.5e-26 Score=203.53 Aligned_cols=208 Identities=10% Similarity=0.110 Sum_probs=155.2
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
.+.+|||+||+++. +.+.+..++++|+.|++.|.++|||||||+.....-. +......-..+. ..|
T Consensus 35 ~~f~VIK~GG~~~~-------~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~------~~~~~~~~~v~~-~~n 100 (271)
T cd04236 35 PAFAVLEVDHSVFR-------SLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS------DLELQAARSRLV-KDC 100 (271)
T ss_pred CCEEEEEEChhhhc-------CchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc------CCcchheehhHH-HHH
Confidence 57899999999997 3457889999999999999999999999986433211 111111111222 456
Q ss_pred HHHHHHHHHHcCCCeeEeecccc----------ccccc-hHHHHH-HHHHhhCCCEEEEeCC----CCC-CCCCcHHHHH
Q 024480 103 AIFLQATMESIGIPTRVQTAFRM----------SEVAE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAA 165 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~----------~~~~~-~~~~~~-l~~ll~~g~iPIi~g~----~g~-~~~~sD~~Aa 165 (267)
..++ +.|+++|+++.++++... ...++ ..++.+ +..+|++|+|||+++. .|. .++++|.+|+
T Consensus 101 ~~Lv-~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~ 179 (271)
T cd04236 101 KTLV-EALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTT 179 (271)
T ss_pred HHHH-HHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHH
Confidence 6654 688999999988765410 00010 113444 5578999999999984 233 3589999999
Q ss_pred HHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH-HHHhhc---C--CCcc-----hHHHHHHHHhCCCcEEEEc
Q 024480 166 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK---D--LSVM-----DMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 166 ~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~-~e~~~l---g--~g~m-----k~~aa~~a~~~Gi~v~I~n 234 (267)
.+|.+|+|++|+|+||++|||++ ++++|++++. .|+.++ | +++| |++++..+...|+.|+|++
T Consensus 180 ~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~ 253 (271)
T cd04236 180 AIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS 253 (271)
T ss_pred HHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence 99999999999999999999974 2579999995 777654 3 5667 7788899999999999997
Q ss_pred CCCCCcHH-HHhcCCCcceEE
Q 024480 235 LNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 235 g~~~~~i~-~~l~g~~~GT~I 254 (267)
|+.+. ++|..++.||.|
T Consensus 254 ---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 254 ---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred ---hHHHHHHHhccCCCCCcC
Confidence 56554 789888899975
No 77
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.95 E-value=4.3e-26 Score=199.59 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=150.2
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcC-----CCCCCChH---HHHHH
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGN-----SGLDRSSA---DYIGM 96 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~---~~~~~ 96 (267)
.|||+||+.+++ .+.+++++|+.|++.|.++|||||||++.+.+.+ .+. .|++.+.. +...+
T Consensus 1 ~ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~ 71 (248)
T cd04252 1 AVIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARK 71 (248)
T ss_pred CEEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHH
Confidence 389999999873 2688999999999999999999999998766533 221 23322222 23333
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEeecccc-------cccc---c-hHHHHH-HHHHhhCCCEEEEeCC----CCC-CCCC
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQTAFRM-------SEVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFT 159 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~-------~~~~---~-~~~~~~-l~~ll~~g~iPIi~g~----~g~-~~~~ 159 (267)
....+|..++ +.|.++|+++.++++... .++. + ..++.+ +..+|+.|+|||++|. .|. .++|
T Consensus 72 al~~vn~~iv-~~l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvn 150 (248)
T cd04252 72 VFLEENLKLV-EALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVN 150 (248)
T ss_pred HHHHHHHHHH-HHHHhCCCCcccccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEEC
Confidence 3336777765 678889999887543211 0111 1 012333 5579999999999984 232 3589
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc---C--CCcc--hHHHHHHHHhC--CC-
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK---D--LSVM--DMTAITLCQEN--NI- 228 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l---g--~g~m--k~~aa~~a~~~--Gi- 228 (267)
+|.+|+.+|.+|+|++|+|+|||||||++ ++++|++++.. +..++ + +++| |++++..+.+. ++
T Consensus 151 aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~ 224 (248)
T cd04252 151 ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSS 224 (248)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999974 25799999864 44333 2 6788 88988888876 44
Q ss_pred cEEEEcCCCCCcHH-HHhcCCCcceEE
Q 024480 229 PVVVFNLNQPGNIA-KAIQGERVGTLI 254 (267)
Q Consensus 229 ~v~I~ng~~~~~i~-~~l~g~~~GT~I 254 (267)
.++|++ ++++. +++..++.||+|
T Consensus 225 ~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 225 SVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEEEC---CchHHHHHhcCCCCCccC
Confidence 488887 57776 567777789975
No 78
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.94 E-value=3e-25 Score=196.59 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHh----hCCCEEEEeCCCC--------CCCCCcHHH
Q 024480 96 MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL----EKGRVVIFAAGTG--------NPFFTTDTA 163 (267)
Q Consensus 96 ~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll----~~g~iPIi~g~~g--------~~~~~sD~~ 163 (267)
.+++++++.+++.+|++.|+++..+++..+........++.+.+.+ ..+.|||++||.+ ..+++||++
T Consensus 138 S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyT 217 (304)
T cd04248 138 SLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMT 217 (304)
T ss_pred hhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHH
Confidence 4556788888999999999999875543332111000112232222 3578999999832 246899999
Q ss_pred HHHHHHhcCCcEEEEeeccCccccCCCCCC--CCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCC
Q 024480 164 AALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 164 Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~--~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
|+.+|.+|+|+++.+||||+ ||+.||+.+ |+++.|+++||+|+.++ |...+|++|++++.+++||++|.|.++|
T Consensus 218 As~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P 296 (304)
T cd04248 218 FSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEP 296 (304)
T ss_pred HHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCC
Confidence 99999999999999999996 999999999 58999999999999876 8889999999999999999999999988
Q ss_pred CcHHHHhcCCCcceEEe
Q 024480 239 GNIAKAIQGERVGTLIG 255 (267)
Q Consensus 239 ~~i~~~l~g~~~GT~I~ 255 (267)
+ ..||+|+
T Consensus 297 ~---------~~GTlIt 304 (304)
T cd04248 297 D---------HPGTLIT 304 (304)
T ss_pred C---------CCCceeC
Confidence 7 6799984
No 79
>PRK09411 carbamate kinase; Reviewed
Probab=99.94 E-value=8.2e-25 Score=193.03 Aligned_cols=223 Identities=22% Similarity=0.268 Sum_probs=159.2
Q ss_pred ceEEEEeccccccCCCC-CCCCH--HHHHHHHHHHHHHHHCCCeEEEEECCchHHhh----hHHhcCCCCCCChHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-QNIDP--KITMAIAREVASVTRLGIEVAIVVGGGNIFRG----ASAAGNSGLDRSSADYIGM 96 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~~~~~--~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~----~~~~~~~~l~~~~~~~~~~ 96 (267)
+++||.+||++|...+. .+... ..++..++.|+.+.++ |++||+||.|++.-. ..... ..+..++|.+.+
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~--~~~~~pld~~~a 78 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWK--EVEPYPLDVLVA 78 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhc--CCCCCCchhhhh
Confidence 68999999999976542 33333 4888999999999988 999999999985411 11111 235567787776
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEee-----cccccc--c------------------------------cchH-------
Q 024480 97 LATVMNAIFLQATMESIGIPTRVQT-----AFRMSE--V------------------------------AEPY------- 132 (267)
Q Consensus 97 ~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~~~~--~------------------------------~~~~------- 132 (267)
...-+--++++++|...++.....+ ..+..| | ++.|
T Consensus 79 ~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP 158 (297)
T PRK09411 79 ESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASP 158 (297)
T ss_pred hcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCC
Confidence 6554455567788877775432222 222111 0 0001
Q ss_pred -----HHHH-HHHHhhCCCEEEEeCC---------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCc
Q 024480 133 -----IRRR-AVRHLEKGRVVIFAAG---------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 196 (267)
Q Consensus 133 -----~~~~-l~~ll~~g~iPIi~g~---------~g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a 196 (267)
++.+ +..++++|+|||.+|. .+ ..++|+|.+|+.||.+|+||+|+|+|||||||+++ .+|++
T Consensus 159 ~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~--~~p~~ 236 (297)
T PRK09411 159 QPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENW--GTPQQ 236 (297)
T ss_pred CCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCC--CCCCC
Confidence 1233 4578999999777642 12 23689999999999999999999999999999864 36788
Q ss_pred ccccccCHHHHhhc--CCCcc--hHHHHHHHHh-CCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 197 RLLDTLTYQEVTSK--DLSVM--DMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 197 ~li~~Is~~e~~~l--g~g~m--k~~aa~~a~~-~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
++|++++.+|+.++ .+|+| |+++|..+.+ .|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 237 ~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 237 RAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred cCCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 99999999998765 46778 9999866555 466788865 67788999998 799985
No 80
>PRK09181 aspartate kinase; Validated
Probab=99.93 E-value=4.6e-25 Score=208.41 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhh----CCCEEEEeCCCC--------CCCCC
Q 024480 92 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFFT 159 (267)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~----~g~iPIi~g~~g--------~~~~~ 159 (267)
|.+...++++++.+++.+|++.|+++.++++.....-......+++.+.++ .+.|||++||.+ ..+++
T Consensus 140 D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGG 219 (475)
T PRK09181 140 EMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGY 219 (475)
T ss_pred HHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCCh
Confidence 334446778999999999999999998755422211001112334444444 578999999842 24689
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEc
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~--~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
||++|+.+|.+|+|+++.+||||+ ||++|||.+ |+|++|++|||+|+.|+ |...+|+++..+|.+++||++|.|
T Consensus 220 SDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~n 298 (475)
T PRK09181 220 SEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKN 298 (475)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence 999999999999999999999997 999999999 68999999999999886 899999999999999999999999
Q ss_pred CCCCCcHHHHhcCCCcceEEecC
Q 024480 235 LNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 235 g~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
.++|+ ..||+|...
T Consensus 299 t~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 299 TFEPE---------HPGTLITKD 312 (475)
T ss_pred CCCCC---------CCCeEEecC
Confidence 99886 679999754
No 81
>PLN02825 amino-acid N-acetyltransferase
Probab=99.92 E-value=2.1e-23 Score=197.90 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=161.3
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh-hhHHhcC-----CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~-~~~~~~~-----~~l~~~~~~ 92 (267)
+.++.+++|||+||+++.+ . .+..++.+|+.|+..|.++|||||||++.. .+...+. .|++.+..+
T Consensus 13 ~~~rgktfVIk~gG~~l~~-------~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~ 84 (515)
T PLN02825 13 QGHRGSTFVVVISGEVVAG-------P-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSA 84 (515)
T ss_pred HHHCCCEEEEEECchhhcC-------c-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHH
Confidence 4567899999999999974 2 578999999999999999999999998544 3444432 344444333
Q ss_pred H---HHHHHHHHHHHHHHH--------HHHHcCCCe----eEeeccccc-------------ccc---c-hHHHHH-HHH
Q 024480 93 Y---IGMLATVMNAIFLQA--------TMESIGIPT----RVQTAFRMS-------------EVA---E-PYIRRR-AVR 139 (267)
Q Consensus 93 ~---~~~~~~~~~~~l~~~--------~l~~~Gi~~----~~~~~~~~~-------------~~~---~-~~~~~~-l~~ 139 (267)
. ...++..++..+.+. .|+++|.++ ..++..+.. |+. + ..++.. +..
T Consensus 85 ~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~ 164 (515)
T PLN02825 85 ALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE 164 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHH
Confidence 2 233455566665532 357788876 333332211 111 0 013444 457
Q ss_pred HhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---C
Q 024480 140 HLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D 211 (267)
Q Consensus 140 ll~~g~iPIi~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g 211 (267)
+|+.|.|||+++. +|.. ++++|.+|+.+|.+|+|++|||+||++ ++++ ++++|++++.+|+.++ +
T Consensus 165 ~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~ 237 (515)
T PLN02825 165 RLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKR 237 (515)
T ss_pred HHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhh
Confidence 8999999999984 4444 489999999999999999999999977 5543 3578999998775532 0
Q ss_pred ------------------------C--------------------------------C-------------------cc-
Q 024480 212 ------------------------L--------------------------------S-------------------VM- 215 (267)
Q Consensus 212 ------------------------~--------------------------------g-------------------~m- 215 (267)
. . ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (515)
T PLN02825 238 AKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLN 317 (515)
T ss_pred hhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchhhchhhh
Confidence 0 0 11
Q ss_pred ----hHHHHHHHHhCCCc-EEEEcCCCCCcHH-HHhcCCCcceEEecCC
Q 024480 216 ----DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGGTW 258 (267)
Q Consensus 216 ----k~~aa~~a~~~Gi~-v~I~ng~~~~~i~-~~l~g~~~GT~I~~~~ 258 (267)
++.+|..|.+.||+ +|++++..++.+. ++|+.+++||.|..+.
T Consensus 318 ~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~ 366 (515)
T PLN02825 318 GYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDM 366 (515)
T ss_pred hHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccCh
Confidence 37788899999996 9999999999987 7999999999998653
No 82
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.91 E-value=2.2e-23 Score=192.94 Aligned_cols=194 Identities=19% Similarity=0.256 Sum_probs=140.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCChHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADYIGM 96 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~~~~~~~~ 96 (267)
.+++|||+||+++.+ .+..++++|+.|+..|.++|||||||++.+. +...+. .|++.+..+.+..
T Consensus 36 ~~~~VIKiGG~~l~~---------~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~v 106 (398)
T PRK04531 36 ERFAVIKVGGAVLRD---------DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAI 106 (398)
T ss_pred CcEEEEEEChHHhhc---------CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHH
Confidence 489999999999873 2478999999999999999999999986544 333331 2333333332221
Q ss_pred HH---HHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHH
Q 024480 97 LA---TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRC 168 (267)
Q Consensus 97 ~~---~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~----~g~~-~~~sD~~Aa~lA 168 (267)
.- ...|..++. .+..+|+.|+|||+++. .|.. ++++|.+|+.+|
T Consensus 107 v~~~l~~vn~~lv~----------------------------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA 158 (398)
T PRK04531 107 VRKVFQRSNLDLVE----------------------------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELV 158 (398)
T ss_pred HHHHHHHHHHHHHH----------------------------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHH
Confidence 11 122222211 14578999999999874 2333 489999999999
Q ss_pred HhcCCcEEEEeeccCccccCCCCCCCCcccccccCH-HHHhhc-----CCCcc--hHHHHHHHHhCCCcEEEEcCCCCCc
Q 024480 169 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-QEVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGN 240 (267)
Q Consensus 169 ~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~-~e~~~l-----g~g~m--k~~aa~~a~~~Gi~v~I~ng~~~~~ 240 (267)
.+|+|++|+|+|||+|||+.+ +++|++|+. +|...+ -+++| |++++..+++....+++++...|++
T Consensus 159 ~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~ 232 (398)
T PRK04531 159 SALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSD 232 (398)
T ss_pred HHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCH
Confidence 999999999999999999743 679999986 344433 25788 8999999886544578888888999
Q ss_pred HHH-HhcCCCcceEEecCCC
Q 024480 241 IAK-AIQGERVGTLIGGTWN 259 (267)
Q Consensus 241 i~~-~l~g~~~GT~I~~~~~ 259 (267)
+.. ++..++.||+|....+
T Consensus 233 Ll~eLft~~G~GT~I~~g~~ 252 (398)
T PRK04531 233 LAKELFTHKGSGTLVRRGER 252 (398)
T ss_pred HHHHHccCCCCCeEEecCCc
Confidence 885 5566678999987543
No 83
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.90 E-value=2.4e-23 Score=185.85 Aligned_cols=165 Identities=23% Similarity=0.312 Sum_probs=133.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccch-H-----HH---HHHHHHh-----hCCCEEEEeCC
Q 024480 87 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y-----IR---RRAVRHL-----EKGRVVIFAAG 152 (267)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~-~-----~~---~~l~~ll-----~~g~iPIi~g~ 152 (267)
+.++.|++..+++.++.++++++|+.+|.++...+.+........ + +. ....+++ ..+.+||++||
T Consensus 188 t~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf 267 (559)
T KOG0456|consen 188 TLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGF 267 (559)
T ss_pred chhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeec
Confidence 334556666778889999999999999999987666554332211 0 00 1111221 35789999998
Q ss_pred CC----------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHH
Q 024480 153 TG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTA 219 (267)
Q Consensus 153 ~g----------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~a 219 (267)
.| ..++.+|..|+.+|.+|++|.+.+|.|||||++.||++.|.|++++.++++|+.|+ |...+|+.+
T Consensus 268 ~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~s 347 (559)
T KOG0456|consen 268 LGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFS 347 (559)
T ss_pred cccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccc
Confidence 44 24689999999999999999999999999999999999999999999999999886 888999999
Q ss_pred HHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 220 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 220 a~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
++++.+..||++|-|..+|- ..||.|+++...
T Consensus 348 M~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~~m 379 (559)
T KOG0456|consen 348 MRPAREGRIPVRVKNSYNPT---------APGTVITPDRDM 379 (559)
T ss_pred cchhhccCcceEeecCCCCC---------CCceEeccchhh
Confidence 99999999999999998886 789999986543
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.89 E-value=9.3e-22 Score=159.42 Aligned_cols=198 Identities=21% Similarity=0.303 Sum_probs=146.7
Q ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHHHH
Q 024480 27 LLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIF 105 (267)
Q Consensus 27 VIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l 105 (267)
|||.|||...+ ....+-+.+..+ +.++.+|.|||.|++..++.. +.+++....+++...++-+...+
T Consensus 3 vVk~~Gs~~~~---------~~~~~~~ale~~---~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~ 70 (212)
T COG2054 3 VVKKGGSGVAE---------RAAAVKEALENL---QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFY 70 (212)
T ss_pred eEEecCCChHH---------HHHHHHHHHHhh---cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 78888886542 223333333333 347999999999998776553 26788889999988888766666
Q ss_pred HHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCC------C---CCCCCCcHHHHHHHHHhcCCcEE
Q 024480 106 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVV 176 (267)
Q Consensus 106 ~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~L 176 (267)
+++.......... .+. ....+.+..||+-++ + -.|.++||.+|.++|++++|.++
T Consensus 71 lad~~~~~~~~tv----~ep------------~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~v 134 (212)
T COG2054 71 LADLASRFVTDTV----TEP------------EDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEV 134 (212)
T ss_pred HHhhhccccccee----ech------------hhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEE
Confidence 6544332221111 111 123344556666653 1 14679999999999999999999
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCC-cceEEe
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIG 255 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~-~GT~I~ 255 (267)
++.|||||||+.+|+ ++++++|+..|+.. |...+++..-+.+.+++++++++||..|+++.++++|++ +||+|.
T Consensus 135 v~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Iv 209 (212)
T COG2054 135 VKATDVDGIYEEDPK----GKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIV 209 (212)
T ss_pred EEEecCCcccccCCc----chhhhhhhHhhccc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEe
Confidence 999999999998764 68999999988765 556778888899999999999999999999999999975 699997
Q ss_pred cC
Q 024480 256 GT 257 (267)
Q Consensus 256 ~~ 257 (267)
+.
T Consensus 210 g~ 211 (212)
T COG2054 210 GG 211 (212)
T ss_pred CC
Confidence 63
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.88 E-value=6.8e-21 Score=164.75 Aligned_cols=227 Identities=25% Similarity=0.367 Sum_probs=158.0
Q ss_pred ceEEEEeccccccCCCC-C--CCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh----HHhc-CCCCCCChHHHHH
Q 024480 24 QRVLLKVSGEALAGDHT-Q--NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA----SAAG-NSGLDRSSADYIG 95 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~-~--~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~----~~~~-~~~l~~~~~~~~~ 95 (267)
+++||.+||++|-..++ . ....+.++..+++|+.+.++|+++||.||.|++.-.+ ..+. ..+.+..++|.+.
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~ 80 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV 80 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence 47999999999976643 2 2346788899999999999999999999999854221 1111 1234556777766
Q ss_pred HHHHHHHHHH----HHHHHHHcCCCee---E--eecccccc--c-------------------------------cchH-
Q 024480 96 MLATVMNAIF----LQATMESIGIPTR---V--QTAFRMSE--V-------------------------------AEPY- 132 (267)
Q Consensus 96 ~~~~~~~~~l----~~~~l~~~Gi~~~---~--~~~~~~~~--~-------------------------------~~~~- 132 (267)
++..-+--++ +.+.|..+|++.. . +..++..| | ++.|
T Consensus 81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R 160 (312)
T COG0549 81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR 160 (312)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence 5443222222 3455666786321 1 12222111 0 0001
Q ss_pred -----------HHH-HHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 133 -----------IRR-RAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 133 -----------~~~-~l~~ll~~g~iPIi~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
++. .+..++++|.++|..|..|. .++|.|..++.||.+++||.|+++||||+||-
T Consensus 161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~ 240 (312)
T COG0549 161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYV 240 (312)
T ss_pred EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchhee
Confidence 222 35578899999998875332 25899999999999999999999999999998
Q ss_pred CCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHH-HHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 188 DNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAIT-LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 188 ~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~-~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
...+ |+.+.+++++.+|+.++ ..|.| |++||. ++...|-+++|.+ .+.+.++|.|+ .||.|.+
T Consensus 241 n~gk--p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 241 NFGK--PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cCCC--ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 8753 67789999999997653 35667 888875 5555567799986 67888999997 6999863
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=98.44 E-value=2.3e-06 Score=80.01 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=99.4
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh-cC-----CCCCCChHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GN-----SGLDRSSADYIGML 97 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~-~~-----~~l~~~~~~~~~~~ 97 (267)
+.+|+|-|+...+ +.++.++..++-++..|.+.|||||.|..-..+-.. +. .+++.+..+.+++.
T Consensus 96 ~fvV~~~g~~~~t---------~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~ 166 (520)
T KOG2436|consen 96 KFVVIKSGEAIST---------SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAA 166 (520)
T ss_pred eEEEEeccccccc---------chHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHh
Confidence 3455555554433 356788899999999999999999999865443222 21 12233333333332
Q ss_pred HH----HHHHHHHHHHHHHcCCCeeEeecccc-------c--ccc--chH--------HH-HHHHHHhhCCCEEEEeCC-
Q 024480 98 AT----VMNAIFLQATMESIGIPTRVQTAFRM-------S--EVA--EPY--------IR-RRAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 98 ~~----~~~~~l~~~~l~~~Gi~~~~~~~~~~-------~--~~~--~~~--------~~-~~l~~ll~~g~iPIi~g~- 152 (267)
-+ ..|..++ ..|++.|-.+++.+.-.. . .+. ..| ++ +.+..+++.|.+|++..-
T Consensus 167 ~~~~~~E~n~~lv-~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla 245 (520)
T KOG2436|consen 167 KESVSLEANLNLV-INLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLA 245 (520)
T ss_pred hhcchhhhhhHHH-HHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhc
Confidence 22 1233333 467777766554332211 0 000 001 12 235578899999998863
Q ss_pred ---CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH
Q 024480 153 ---TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 206 (267)
Q Consensus 153 ---~g~~-~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e 206 (267)
.|+. .++.|.+|..+|..|+|+++++++|+.=+...+ +..++-+...|
T Consensus 246 ~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~------ge~~S~l~l~~ 297 (520)
T KOG2436|consen 246 ATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKEN------GEDISSLILQE 297 (520)
T ss_pred ccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccC------cccccccccch
Confidence 3443 489999999999999999999999983333333 34455554443
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=72.14 E-value=4.8 Score=32.84 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=32.7
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHH
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 242 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~ 242 (267)
++.+||||++|+ ++++=.-.-+|+..+ ...+=...+...+.|+++-|+.|++...+.
T Consensus 10 Lli~DVDGvLTD-------G~ly~~~~Gee~KaF--nv~DG~Gik~l~~~Gi~vAIITGr~s~ive 66 (170)
T COG1778 10 LLILDVDGVLTD-------GKLYYDENGEEIKAF--NVRDGHGIKLLLKSGIKVAIITGRDSPIVE 66 (170)
T ss_pred EEEEeccceeec-------CeEEEcCCCceeeee--eccCcHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 356899999984 333322222222221 111223456667889988888888766554
No 88
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=66.66 E-value=12 Score=29.19 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=31.0
Q ss_pred cceEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
||.+++=+-|+.+.++. ++..+ .......+.+.++++.|+++++++|
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~-~~~~~~ie~L~~l~~~G~~IiiaTG 48 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANV-APILAVIEKLRHYKALGFEIVISSS 48 (126)
T ss_pred CCEEEEeCCCCcccCCCCccccc-ccCHHHHHHHHHHHHCCCEEEEECC
Confidence 47889999999875432 22111 1223555667788889999999874
No 89
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=61.24 E-value=20 Score=29.35 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=34.9
Q ss_pred EeeccCccccCCCCC--CCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC
Q 024480 178 KATNVDGVYDDNPRR--NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 248 (267)
Q Consensus 178 ~lTDVdGVy~~dP~~--~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~ 248 (267)
+.+|+|||+++. +. ++++...+..+ .-+..+.+.+.+.|+++.|+++.....+...+..-
T Consensus 10 ~v~d~dGv~tdg-~~~~~~~g~~~~~~~----------~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 10 VILDVDGVMTDG-RIVINDEGIESRNFD----------IKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred EEEeCceeeECC-eEEEcCCCcEEEEEe----------cchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 568999999953 11 11111111111 12566777777888888777776666555555433
No 90
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=59.91 E-value=21 Score=31.25 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=35.8
Q ss_pred cEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 174 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 174 d~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
+..++++|+||=+-.+ + + .++.. -.++.+.+.+.|++++|+.||....+..++
T Consensus 6 ~~~lI~~DlDGTLL~~-~-----~---~i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~ 58 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS-H-----T---YDWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQ 58 (271)
T ss_pred CCeEEEEeCccCCcCC-C-----C---cCcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHH
Confidence 3567889999977632 1 1 11111 135677788899999999999888776554
No 91
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=56.67 E-value=18 Score=30.51 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=31.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
+.|.++.=+-|+++.+.. .++++ ..+.|.++.+.|+++++++|
T Consensus 2 ~~kli~~DlDGTLl~~~~--~i~~~----~~~al~~l~~~G~~~~iaTG 44 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDR--RLSLK----AVEAIRKAEKLGIPVILATG 44 (230)
T ss_pred ceeEEEEecCCCcCCCCC--ccCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 457888899999886432 34443 44557778889999999985
No 92
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=55.25 E-value=34 Score=27.81 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=39.6
Q ss_pred CccCCccceEEEEeccccccCCCC--CCCCHHHH----HHHHHHHHHHHHCCCeEEEEECC
Q 024480 17 SKPSYKWQRVLLKVSGEALAGDHT--QNIDPKIT----MAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 17 ~~~~~~~~~iVIKiGGs~l~~~~~--~~~~~~~l----~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+-|.|+.|.+++=+.|..+..++. +..+++.+ ..+.+.|..|+++|+++.|++.+
T Consensus 7 ~~~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~ 67 (166)
T TIGR01664 7 DGPKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQ 67 (166)
T ss_pred CCCCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCC
Confidence 448898899999999998764431 22233333 45677788899999999999854
No 93
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=54.15 E-value=18 Score=31.41 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=32.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|+.|.++.-+-|+++.++. .++++ ..+.|.+++++|+++++.+|
T Consensus 1 m~~kli~~DlDGTLl~~~~--~i~~~----~~~ai~~l~~~G~~~~iaTG 44 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDH--TISPA----VKQAIAAARAKGVNVVLTTG 44 (270)
T ss_pred CceEEEEEecCCcCcCCCC--ccCHH----HHHHHHHHHHCCCEEEEecC
Confidence 3567899999999886532 45554 34567788889999999974
No 94
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=54.10 E-value=20 Score=31.01 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=32.7
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|+.|.++.=+-|+++.++. .++++ ..+.|.++++.|+++++.+|
T Consensus 1 M~~kli~~DlDGTLl~~~~--~i~~~----~~~ai~~~~~~G~~~~iaTG 44 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKK--TILPE----SLEALARAREAGYKVIIVTG 44 (272)
T ss_pred CCccEEEEeCCCceECCCC--ccCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 3468899999999886542 35554 34667788889999999974
No 95
>PTZ00174 phosphomannomutase; Provisional
Probab=53.98 E-value=17 Score=31.42 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=33.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|+.|+++.=+-|+++.++. .+++. ..+.|.+++++|+++++.+|
T Consensus 3 ~~~klia~DlDGTLL~~~~--~is~~----~~~ai~~l~~~Gi~~viaTG 46 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRN--PITQE----MKDTLAKLKSKGFKIGVVGG 46 (247)
T ss_pred CCCeEEEEECcCCCcCCCC--CCCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 5678899999999997643 45554 34557788889999999975
No 96
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=52.70 E-value=34 Score=27.22 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=10.2
Q ss_pred EEeeccCccccCC
Q 024480 177 LKATNVDGVYDDN 189 (267)
Q Consensus 177 i~lTDVdGVy~~d 189 (267)
++++|.||.+.+.
T Consensus 3 ~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 3 LLILDVDGVLTDG 15 (154)
T ss_pred EEEEeCceeEEcC
Confidence 4678999999864
No 97
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=49.55 E-value=44 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=33.9
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||=+-.+. + +|+.. -.++.+.+.+.|+.+.|+.||.+..+...+
T Consensus 5 li~~DlDGTLl~~~------~---~i~~~----------~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~ 54 (272)
T PRK10530 5 VIALDLDGTLLTPK------K---TILPE----------SLEALARAREAGYKVIIVTGRHHVAIHPFY 54 (272)
T ss_pred EEEEeCCCceECCC------C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 57799999765321 1 23322 145677788899999999999887766544
No 98
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=46.61 E-value=47 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=34.0
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
++++|.||=+-.+ + + .|+.. -.++.+.+.+.|+.+.|+.||....+..++.
T Consensus 4 li~~DlDGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 4 LAAFDMDGTLLMP-----D-H---HLGEK----------TLSTLARLRERDITLTFATGRHVLEMQHILG 54 (272)
T ss_pred EEEEeCCCcCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 4779999966532 1 1 23322 1456677788899999999998877766543
No 99
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=46.48 E-value=51 Score=29.77 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=36.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN 73 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~ 73 (267)
-.++.+|.=+-|++++++..-.++. ..+.+.|.+|.+.|.+++|+++++.
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~ird---PgV~EaL~~LkekGikLaIaTS~~R 173 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRD---PRIYDSLTELKKRGCILVLWSYGDR 173 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCC---HHHHHHHHHHHHCCCEEEEEECCCH
Confidence 3567899999999998754212332 2455667888889999999997653
No 100
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=43.86 E-value=51 Score=29.78 Aligned_cols=47 Identities=6% Similarity=0.106 Sum_probs=33.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
..+.+|.-+-|++++++.+-.++. ..+.+.|.+|++.|+++.|++++
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~ird---p~V~EtL~eLkekGikLaIvTNg 173 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRD---PFVYDSLDELKERGCVLVLWSYG 173 (303)
T ss_pred eccEEEEecCCCccCCCCccccCC---hhHHHHHHHHHHCCCEEEEEcCC
Confidence 457899999999998754222332 23555677888899999999854
No 101
>PRK10976 putative hydrolase; Provisional
Probab=43.37 E-value=68 Score=27.64 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.7
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||=+-.+ + + +++.. -.++.+.+.+.|+++.|+.||....+..++
T Consensus 4 li~~DlDGTLl~~-----~-~---~is~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 53 (266)
T PRK10976 4 VVASDLDGTLLSP-----D-H---TLSPY----------AKETLKLLTARGIHFVFATGRHHVDVGQIR 53 (266)
T ss_pred EEEEeCCCCCcCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 5779999966532 1 1 23332 145677788899999999999887766544
No 102
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=43.03 E-value=50 Score=29.08 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=52.2
Q ss_pred CCCcHHH-HHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh----hc---------C--CCc-chHHH
Q 024480 157 FFTTDTA-AALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT----SK---------D--LSV-MDMTA 219 (267)
Q Consensus 157 ~~~sD~~-Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~----~l---------g--~g~-mk~~a 219 (267)
+++.+.. ....=++|+|+ +-++.||.-=+ +..+..-+.+|.. +. | +|. .+++-
T Consensus 122 ~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh---------~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~ 191 (254)
T PF03437_consen 122 IIEGCAGELLRYRKRLGAD-VKILADVHVKH---------SSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEK 191 (254)
T ss_pred cccccHHHHHHHHHHcCCC-eEEEeeechhh---------cccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHH
Confidence 4444433 23344678999 88999986322 2233333333321 11 2 221 13333
Q ss_pred HHHHHh-CCCcEEEEcCCCCCcHHHHhc---CCCcceEEecCC
Q 024480 220 ITLCQE-NNIPVVVFNLNQPGNIAKAIQ---GERVGTLIGGTW 258 (267)
Q Consensus 220 a~~a~~-~Gi~v~I~ng~~~~~i~~~l~---g~~~GT~I~~~~ 258 (267)
.+.+.+ .++|+++-+|-.++++.+.|. |--+||+|..++
T Consensus 192 l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G 234 (254)
T PF03437_consen 192 LKRVREAVPVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDG 234 (254)
T ss_pred HHHHHhcCCCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCC
Confidence 333222 238999999999999998875 334699997544
No 103
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=42.58 E-value=52 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEECC-----chHHhhhHHhcCCCC
Q 024480 47 ITMAIAREVASVTRLGIEVAIVVGG-----GNIFRGASAAGNSGL 86 (267)
Q Consensus 47 ~l~~l~~~I~~l~~~g~~vViVhGg-----G~~~~~~~~~~~~~l 86 (267)
.++++.+.+.+..++|..++=+|+| |++..+++.+.+.|+
T Consensus 60 tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~gI 104 (254)
T COG2875 60 TLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEALGI 104 (254)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHcCC
Confidence 4567777788888999999999987 444444444443344
No 104
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=41.93 E-value=35 Score=29.52 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=32.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|..+.+++=+-|+.+.+.. .+.. +..+.|++++++|+++++++|
T Consensus 1 ~~~kli~~DlDGTLl~~~~--~i~~----~~~~al~~~~~~g~~v~iaTG 44 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNK--TISP----ETKEALARLREKGVKVVLATG 44 (264)
T ss_pred CCeeEEEEcCCCCccCCCC--ccCH----HHHHHHHHHHHCCCEEEEECC
Confidence 3567888899999887643 2333 455556788889999999985
No 105
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.58 E-value=40 Score=29.46 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=32.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.|+++.=+-|+++.++. .+. ....+.|.++++.|+++++++|-
T Consensus 2 ~~~kli~~DlDGTLl~~~~--~~~----~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHT--YSY----EPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred CcceEEEEcCcccCcCCCC--cCc----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567899999999886432 122 23455678888899999999754
No 106
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=40.31 E-value=55 Score=28.72 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=36.1
Q ss_pred EEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHh-CCCcEEEEcCCCCCcHHHHhc
Q 024480 175 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 175 ~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~-~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.++|++|.||=+... ..+|+.. .++.. . .++++.+.+ .|+.+.|++|+....+.+++.
T Consensus 14 ~~li~~D~DGTLl~~-~~~p~~~---~i~~~-~---------~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAEI-KPHPDQV---VVPDN-I---------LQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCCC-CCCcccc---cCCHH-H---------HHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 477889999987642 1222221 12211 1 233455555 789999999999888877664
No 107
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=40.14 E-value=52 Score=28.36 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=33.6
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
++++|.||-+..+.+ +.++. -.++.+.+.+.|+++.|+.||.+..+.+++.
T Consensus 1 li~~DlDGTll~~~~-----~~~~~--------------~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~ 51 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-----YDWGP--------------AKEVLERLQELGIPVIPCTSKTAAEVEYLRK 51 (256)
T ss_pred CEEEcCCCCCcCCCC-----cCchH--------------HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 367999998764311 11111 1355666778899999999998887766553
No 108
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=38.77 E-value=61 Score=27.61 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.++.+.+.+.|+++++++|+.+..+..++
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~ 49 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYR 49 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 34566677788888888888777666544
No 109
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=37.90 E-value=46 Score=24.12 Aligned_cols=29 Identities=10% Similarity=-0.056 Sum_probs=19.5
Q ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEE
Q 024480 144 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVV 176 (267)
Q Consensus 144 g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~L 176 (267)
..||++.|- .++++.+|..+|..|++.-+
T Consensus 50 ~vIplL~GH----~GGan~lA~~iA~~lga~~V 78 (84)
T PF11760_consen 50 FVIPLLGGH----RGGANELARQIAELLGAQPV 78 (84)
T ss_dssp EEEEEE-TT----TT-HHHHHHHHHHHTT-EE-
T ss_pred EEEEeccCC----cchHHHHHHHHHHHhCCEEE
Confidence 347777764 35689999999999999643
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=37.84 E-value=82 Score=27.17 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=33.7
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||=+-.+ + + +|+.. -.++.+.+.+.|+.+.|+.||....+..++
T Consensus 5 li~~DlDGTLl~~-----~-~---~i~~~----------~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (270)
T PRK10513 5 LIAIDMDGTLLLP-----D-H---TISPA----------VKQAIAAARAKGVNVVLTTGRPYAGVHRYL 54 (270)
T ss_pred EEEEecCCcCcCC-----C-C---ccCHH----------HHHHHHHHHHCCCEEEEecCCChHHHHHHH
Confidence 5779999966532 1 1 23322 145677788899999999999887766544
No 111
>PLN03017 trehalose-phosphatase
Probab=37.74 E-value=1.1e+02 Score=28.52 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcEEEEeeccCcccc---CCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCC
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYD---DNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQP 238 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~---~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~ 238 (267)
.....++...+.+++++++|.||=+. ++|. .. .++.+ + .++++.+. .++++.|++|+..
T Consensus 98 ~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~----~a---~i~~~-~---------~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 98 EMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPD----KA---FMSSK-M---------RRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcc----cc---cCCHH-H---------HHHHHHHh-cCCcEEEEeCCCH
Confidence 33455666667788999999999887 3332 11 12211 0 23344444 6788999999988
Q ss_pred CcHHHHh
Q 024480 239 GNIAKAI 245 (267)
Q Consensus 239 ~~i~~~l 245 (267)
..+.+++
T Consensus 160 ~~l~~~~ 166 (366)
T PLN03017 160 DKVYNFV 166 (366)
T ss_pred HHHHHhh
Confidence 8887664
No 112
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=37.62 E-value=34 Score=28.08 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=10.7
Q ss_pred EEEeeccCccccC
Q 024480 176 VLKATNVDGVYDD 188 (267)
Q Consensus 176 Li~lTDVdGVy~~ 188 (267)
-.+++|+||.+++
T Consensus 22 kli~~D~Dgtl~~ 34 (183)
T PRK09484 22 RLLICDVDGVFSD 34 (183)
T ss_pred eEEEEcCCeeeec
Confidence 3678999999985
No 113
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=37.52 E-value=70 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.++.+.+.+.|+.+.|+.|+....+..++.
T Consensus 22 ~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~ 51 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATGRPYKEVKNILK 51 (256)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 456677788899999999988777765543
No 114
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=37.46 E-value=2e+02 Score=22.40 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 173 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~A 173 (267)
|...+.+.|++.|..+....... ++ ...+.+.+.+.+++..+.|..|. ......|.+...++...+-
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~-Dd--~~~i~~~l~~~~~~~D~VittGG--~g~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVP-DD--PDAIKEALRRALDRADLVITTGG--TGPGPDDVTPEALAEAGGR 84 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEE-SS--HHHHHHHHHHHHHTTSEEEEESS--SSSSTTCHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCeeeEEEEEC-CC--HHHHHHHHHhhhccCCEEEEcCC--cCcccCCcccHHHHHhcCc
Confidence 44556788888998765322111 11 11233445567778788888874 3457789999999888764
No 115
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=37.42 E-value=61 Score=27.15 Aligned_cols=49 Identities=27% Similarity=0.334 Sum_probs=31.4
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHH
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 244 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~ 244 (267)
++++|.||=+-.+ + + .++.. -.++.+.+.+.|+++.|+.||....+..+
T Consensus 5 li~~DlDGTLl~~-----~-~---~i~~~----------~~~al~~l~~~G~~~~iaTGR~~~~~~~~ 53 (230)
T PRK01158 5 AIAIDIDGTITDK-----D-R---RLSLK----------AVEAIRKAEKLGIPVILATGNVLCFARAA 53 (230)
T ss_pred EEEEecCCCcCCC-----C-C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence 5779999966532 1 1 12221 13456666778999999999887766544
No 116
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=36.57 E-value=1.4e+02 Score=26.14 Aligned_cols=84 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcch
Q 024480 137 AVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMD 216 (267)
Q Consensus 137 l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk 216 (267)
+.+.|.+.-|.| .-|++-|.-....|+.+|||++.+.|. -|..- ...-...|+..+
T Consensus 118 ~i~~L~~~gIrV------SLFidP~~~qi~~A~~~GAd~VELhTG---~yA~a---------~~~~~~~el~~~------ 173 (239)
T PRK05265 118 AIARLKDAGIRV------SLFIDPDPEQIEAAAEVGADRIELHTG---PYADA---------KTEAEAAELERI------ 173 (239)
T ss_pred HHHHHHHCCCEE------EEEeCCCHHHHHHHHHhCcCEEEEech---hhhcC---------CCcchHHHHHHH------
Confidence 334444444454 236888999999999999999999994 45431 111113333221
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHH
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKA 244 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~ 244 (267)
..+++.|.+.|+.|.--.|-+.+++..+
T Consensus 174 ~~aa~~a~~lGL~VnAGHgLny~Nv~~i 201 (239)
T PRK05265 174 AKAAKLAASLGLGVNAGHGLNYHNVKPI 201 (239)
T ss_pred HHHHHHHHHcCCEEecCCCCCHHhHHHH
Confidence 4667778888888887777776666543
No 117
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=36.11 E-value=94 Score=25.84 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=32.4
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||=+..+ + . +++.. -.++.+.+.+.|+++.|+.|+.+..+..++
T Consensus 3 ~v~~DlDGTLl~~-----~-~---~i~~~----------~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 3 LVAIDIDGTLTEP-----N-R---MISER----------AIEAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred EEEEecCCCcCCC-----C-c---ccCHH----------HHHHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 4778999977632 1 1 12221 135566677889999999998877765543
No 118
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=35.64 E-value=47 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHHhhhHH
Q 024480 51 IAREVASVTRLGIEVAIVVGGGNIFRGASA 80 (267)
Q Consensus 51 l~~~I~~l~~~g~~vViVhGgG~~~~~~~~ 80 (267)
+.+.+++|+++|.+-|+|+|||.+...+..
T Consensus 123 l~~~l~~L~~~g~~~i~v~GG~~l~~~~l~ 152 (200)
T PF01872_consen 123 LEEALRRLKERGGKDILVEGGGSLNGSFLR 152 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEechHHHHHHHHh
Confidence 556677888888899999988776655433
No 119
>PLN02887 hydrolase family protein
Probab=35.62 E-value=48 Score=32.81 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=36.3
Q ss_pred CccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 17 SKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 17 ~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
++...++|.++.=+-|+++.++. .++.. ..+.|.+++++|+++++.+|
T Consensus 302 ~~~~~~iKLIa~DLDGTLLn~d~--~Is~~----t~eAI~kl~ekGi~~vIATG 349 (580)
T PLN02887 302 RFYKPKFSYIFCDMDGTLLNSKS--QISET----NAKALKEALSRGVKVVIATG 349 (580)
T ss_pred hhhccCccEEEEeCCCCCCCCCC--ccCHH----HHHHHHHHHHCCCeEEEEcC
Confidence 34567788999999999986532 35554 34667888899999999975
No 120
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.36 E-value=2.5e+02 Score=24.74 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 174 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad 174 (267)
|+..+++.|.++|++......+ +|-. ..+.+.+..++++-.+.|++|. ..--.-|.++..+|++|+-+
T Consensus 22 Na~~la~~L~~~G~~v~~~~~V--gD~~-~~I~~~l~~a~~r~D~vI~tGG--LGPT~DDiT~e~vAka~g~~ 89 (255)
T COG1058 22 NAAFLADELTELGVDLARITTV--GDNP-DRIVEALREASERADVVITTGG--LGPTHDDLTAEAVAKALGRP 89 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEec--CCCH-HHHHHHHHHHHhCCCEEEECCC--cCCCccHhHHHHHHHHhCCC
Confidence 5555778899999987644322 1110 1122334456667778888874 33355689999999999865
No 121
>PTZ00174 phosphomannomutase; Provisional
Probab=34.57 E-value=66 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=35.8
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
++++|.||=+-.+- + +++.. . .++.+.+.+.|+.+.|++||....+.+.+.
T Consensus 7 lia~DlDGTLL~~~------~---~is~~---------~-~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 7 ILLFDVDGTLTKPR------N---PITQE---------M-KDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred EEEEECcCCCcCCC------C---CCCHH---------H-HHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 68899999665321 1 23321 1 356777888999999999998888877664
No 122
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=34.24 E-value=83 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 218 TAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 218 ~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++.+.+.|+++.|+.|+.+..+..++
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 4556667789999999998887665544
No 123
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=33.18 E-value=57 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=31.0
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
.|.++.=+-|+++.++. .++++ ..+.|+++++.|+++++++|
T Consensus 2 ~kli~~DlDGTLl~~~~--~i~~~----~~~ai~~l~~~G~~~~iaTG 43 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH--HLGEK----TLSTLARLRERDITLTFATG 43 (272)
T ss_pred ccEEEEeCCCcCcCCCC--cCCHH----HHHHHHHHHHCCCEEEEECC
Confidence 57888899999886432 45554 34557778889999999974
No 124
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=32.61 E-value=1.1e+02 Score=23.79 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFN 234 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~n 234 (267)
...=..-|..|..++.|..+|+|- +|++--.- .++..++...+..+ -+-++.|.++|++.+++.
T Consensus 19 ~ya~f~~A~~a~smg~dV~iF~t~-dG~~l~~K---~~~ekik~~~~~~l---------~~~~~~a~e~GVk~yvCe 82 (120)
T COG2044 19 AYAPFVMATAAASMGYDVTIFFTM-DGVTLVKK---KVAEKIKHPNFPPL---------EELIKQAIEAGVKIYVCE 82 (120)
T ss_pred HHhHHHHHHHHHhCCCceEEEEEe-ccceeeee---cchhhhcCCCCCCH---------HHHHHHHHHcCCEEEEEc
Confidence 444556678899999999999884 66653210 01222222211111 234677889999988875
No 125
>PRK10976 putative hydrolase; Provisional
Probab=32.25 E-value=60 Score=27.98 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=31.3
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
.|.++.=+-|+++.++. .++++ ..+.|.++++.|+++++.+|
T Consensus 2 ikli~~DlDGTLl~~~~--~is~~----~~~ai~~l~~~G~~~~iaTG 43 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH--TLSPY----AKETLKLLTARGIHFVFATG 43 (266)
T ss_pred ceEEEEeCCCCCcCCCC--cCCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 46788889999886532 45554 34667888889999999975
No 126
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.22 E-value=33 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEECC-chHH
Q 024480 47 ITMAIAREVASVTRLGIEVAIVVGG-GNIF 75 (267)
Q Consensus 47 ~l~~l~~~I~~l~~~g~~vViVhGg-G~~~ 75 (267)
...+|.+.+..+.+. .++||++|| |++-
T Consensus 46 ~~~~I~~~l~~a~~r-~D~vI~tGGLGPT~ 74 (255)
T COG1058 46 NPDRIVEALREASER-ADVVITTGGLGPTH 74 (255)
T ss_pred CHHHHHHHHHHHHhC-CCEEEECCCcCCCc
Confidence 345778888888777 899999988 8753
No 127
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=31.31 E-value=1.2e+02 Score=26.06 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcC
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG 247 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g 247 (267)
++++|.||=+..+ +.+ ++... .++.+.+.+.|+++.|+.||....+..++..
T Consensus 5 li~~DlDGTLl~~-----~~~----i~~~~----------~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~ 56 (264)
T COG0561 5 LLAFDLDGTLLDS-----NKT----ISPET----------KEALARLREKGVKVVLATGRPLPDVLSILEE 56 (264)
T ss_pred EEEEcCCCCccCC-----CCc----cCHHH----------HHHHHHHHHCCCEEEEECCCChHHHHHHHHH
Confidence 5789999977643 111 33221 3445567788999999999988777766643
No 128
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=29.99 E-value=87 Score=26.04 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=29.0
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|.++.=+-|+++.++. .+.+ ...+.|.++.+.|.++++++|
T Consensus 2 k~v~~DlDGTLl~~~~--~i~~----~~~~~i~~l~~~g~~~~~~TG 42 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR--MISE----RAIEAIRKAEKKGIPVSLVTG 42 (215)
T ss_pred cEEEEecCCCcCCCCc--ccCH----HHHHHHHHHHHCCCEEEEEcC
Confidence 5677788898875432 2444 345667788889999999985
No 129
>smart00463 SMR Small MutS-related domain.
Probab=28.93 E-value=1.2e+02 Score=21.03 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHCCC--eEEEEECCch
Q 024480 46 KITMAIAREVASVTRLGI--EVAIVVGGGN 73 (267)
Q Consensus 46 ~~l~~l~~~I~~l~~~g~--~vViVhGgG~ 73 (267)
+++..+-+.|.++...+. .+.||||-|.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~ 42 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGK 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccC
Confidence 455667777777777775 7889998764
No 130
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=28.90 E-value=69 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHhcCCc-EEEEeeccCc
Q 024480 158 FTTDTAAALRCAEINAE-VVLKATNVDG 184 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad-~Li~lTDVdG 184 (267)
.+.|.+.+.++.+|..+ .++-|||..|
T Consensus 20 ~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 20 QSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 57899999999999988 8889999877
No 131
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=28.89 E-value=91 Score=26.93 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=10.1
Q ss_pred EEeeccCccccCC
Q 024480 177 LKATNVDGVYDDN 189 (267)
Q Consensus 177 i~lTDVdGVy~~d 189 (267)
.|+.|+||++-..
T Consensus 3 ~~~~D~DGtl~~~ 15 (249)
T TIGR01457 3 GYLIDLDGTMYKG 15 (249)
T ss_pred EEEEeCCCceEcC
Confidence 3678999998754
No 132
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.59 E-value=1.4e+02 Score=20.70 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
.|+=-||--.+ |.+. +...|.+++++--.++|||||
T Consensus 5 rVli~GgR~~~-------D~~~---i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 5 RVLITGGRDWT-------DHEL---IWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred EEEEEECCccc-------cHHH---HHHHHHHHHHhCCCEEEEECC
Confidence 34445665555 3334 444454444443578899976
No 133
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=27.37 E-value=1.3e+02 Score=24.61 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
++++|.||=+..+ + .. +++.. + .+++..+.+.|+++.|++|+....+.+++.
T Consensus 1 li~~D~DgTL~~~-~----~~---~~~~~---------~-~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~ 52 (204)
T TIGR01484 1 LLFFDLDGTLLDP-N----AH---ELSPE---------T-IEALERLREAGVKVVLVTGRSLAEIKELLK 52 (204)
T ss_pred CEEEeCcCCCcCC-C----CC---cCCHH---------H-HHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 4789999988742 1 11 12211 1 345666777888899999998887776664
No 134
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.23 E-value=89 Score=28.29 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=29.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
+|+|+.=+-|+.+..... +. .+..+.|.+|.+.|..||+.+|
T Consensus 1 ~KLIftDLDGTLLd~~~~--~~----~~a~~aL~~Lk~~GI~vVlaTG 42 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN--SY----GAARQALAALERRSIPLVLYSL 42 (302)
T ss_pred CcEEEEeCCCCCcCCCCc--CC----HHHHHHHHHHHHCCCEEEEEcC
Confidence 467888999998864321 11 3345668888889999998874
No 135
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=26.62 E-value=1.1e+02 Score=27.71 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 218 TAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 218 ~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
+++..+.+.|+++++++|+....+..+.
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~ 52 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLC 52 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 4566677789999999988776665433
No 136
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=26.50 E-value=1.6e+02 Score=27.15 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=39.2
Q ss_pred CCCccCCccceEEEEeccccccCCCCC------------------CCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHh
Q 024480 15 GMSKPSYKWQRVLLKVSGEALAGDHTQ------------------NIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFR 76 (267)
Q Consensus 15 ~~~~~~~~~~~iVIKiGGs~l~~~~~~------------------~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~ 76 (267)
+++..+.+.+++.|-.||-++...+-+ ..++ .++.+.+-|.-+++++..+++-+|||+..+
T Consensus 21 ~l~~ei~~~~kVLi~YGGGSIKrnGvydqV~~~Lkg~~~~E~~GVEPNP-~~~Tv~kaV~i~kee~idflLAVGGGSViD 99 (384)
T COG1979 21 ELREEIPKDAKVLIVYGGGSIKKNGVYDQVVEALKGIEVIEFGGVEPNP-RLETLMKAVEICKEENIDFLLAVGGGSVID 99 (384)
T ss_pred HHHhhccccCeEEEEecCccccccchHHHHHHHhcCceEEEecCCCCCc-hHHHHHHHHHHHHHcCceEEEEecCcchhh
Confidence 344444555777777777777543200 1122 345566667667788999999999998544
Q ss_pred h
Q 024480 77 G 77 (267)
Q Consensus 77 ~ 77 (267)
+
T Consensus 100 ~ 100 (384)
T COG1979 100 G 100 (384)
T ss_pred h
Confidence 3
No 137
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=26.49 E-value=79 Score=26.06 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHCCC--eEEEEECC-ch
Q 024480 50 AIAREVASVTRLGI--EVAIVVGG-GN 73 (267)
Q Consensus 50 ~l~~~I~~l~~~g~--~vViVhGg-G~ 73 (267)
.+++.+.+|+++|+ ++|+-|+| |.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe 78 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGE 78 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcch
Confidence 66777778888998 99999988 65
No 138
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.45 E-value=1.2e+02 Score=25.63 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=14.8
Q ss_pred HHHHHHCCCeEEEEECCch
Q 024480 55 VASVTRLGIEVAIVVGGGN 73 (267)
Q Consensus 55 I~~l~~~g~~vViVhGgG~ 73 (267)
++.+++.|++++||+||-.
T Consensus 86 v~~lk~~G~~v~iiSgg~~ 104 (212)
T COG0560 86 VAALKAAGAKVVIISGGFT 104 (212)
T ss_pred HHHHHHCCCEEEEEcCChH
Confidence 5667788999999986643
No 139
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.30 E-value=3.6e+02 Score=21.94 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 174 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad 174 (267)
|...+.+.|.+.|+.+...... .++ ...+.+.+.++++...+.|++|. .....-|.+...++..++-+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v-~Dd--~~~I~~~l~~~~~~~dlVIttGG--~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVV-GDD--EDRIAEALRRASERADLVITTGG--LGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEe-CCC--HHHHHHHHHHHHhCCCEEEECCC--CCCCCCChHHHHHHHHhCCC
Confidence 3445667888899876533211 111 01123334456666678888874 44567799999999999854
No 140
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=26.29 E-value=2.2e+02 Score=28.88 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHh-CCCcEEEEcCCCCCc
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGN 240 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~-~Gi~v~I~ng~~~~~ 240 (267)
.....+...-.+++-++++|.||-+... ...|... .++.. + .++.+.+.+ .|+.++|++|+....
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~-~~~~~~~---~~~~~---------~-~~~L~~L~~d~g~~V~ivSGR~~~~ 544 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPF-APDPELA---VPDKE---------L-RDLLRRLAADPNTDVAIISGRDRDT 544 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCC-CCCcccC---CCCHH---------H-HHHHHHHHcCCCCeEEEEeCCCHHH
Confidence 3455566666788889999999988742 1111111 11110 0 234555556 599999999999998
Q ss_pred HHHHhcC
Q 024480 241 IAKAIQG 247 (267)
Q Consensus 241 i~~~l~g 247 (267)
+.+.+..
T Consensus 545 l~~~~~~ 551 (726)
T PRK14501 545 LERWFGD 551 (726)
T ss_pred HHHHhCC
Confidence 8887753
No 141
>PRK01215 competence damage-inducible protein A; Provisional
Probab=25.93 E-value=4.3e+02 Score=23.29 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 174 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad 174 (267)
|...+.+.|.+.|+.+...... .++. ..+.+.+.++++...+.|++|. .....-|.+...+|..++-+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v-~Dd~--~~I~~~l~~a~~~~DlVIttGG--~g~t~dD~t~eaia~~~g~~ 91 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVV-MDDI--EEIVSAFREAIDRADVVVSTGG--LGPTYDDKTNEGFAKALGVE 91 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEe-CCCH--HHHHHHHHHHhcCCCEEEEeCC--CcCChhhhHHHHHHHHhCCC
Confidence 4445667888899886533211 1111 1133344566666778888874 44566788888888888854
No 142
>PRK03673 hypothetical protein; Provisional
Probab=25.92 E-value=4.1e+02 Score=24.99 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 174 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad 174 (267)
|...+.+.|.+.|+.+....-. .|- ...+.+.+...++...+.|++|. .....-|.+...+|.+++-.
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v--~D~-~~~i~~~l~~a~~~~DlVI~tGG--lGpt~dD~t~~avA~a~g~~ 89 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTV--GDN-LDALVAILRERSQHADVLIVNGG--LGPTSDDLSALAAATAAGEG 89 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEc--CCC-HHHHHHHHHHHhccCCEEEEcCC--CCCCCcccHHHHHHHHcCCC
Confidence 5555777889999986543211 111 01122334456677788888874 34466788888999998854
No 143
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=25.60 E-value=2.7e+02 Score=24.26 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=48.1
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcC
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng 235 (267)
-|+|-|.-....|+.+|||++.+.|. -|-... ..+. . ..|+..+ ..+++.|.+.|+.|.-..|
T Consensus 128 LFiDP~~~qi~~A~~~GAd~VELhTG---~YA~a~---~~~~----~-~~el~~i------~~aa~~A~~lGL~VnAGHg 190 (237)
T TIGR00559 128 LFIDADKDQISAAAEVGADRIEIHTG---PYANAY---NKKE----M-AEELQRI------VKASVHAHSLGLKVNAGHG 190 (237)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCC---Cchh----H-HHHHHHH------HHHHHHHHHcCCEEecCCC
Confidence 36888999999999999999999994 454311 0000 0 1122221 4667778888888877777
Q ss_pred CCCCcHHHHh
Q 024480 236 NQPGNIAKAI 245 (267)
Q Consensus 236 ~~~~~i~~~l 245 (267)
-+.+++..+.
T Consensus 191 Lny~Nv~~i~ 200 (237)
T TIGR00559 191 LNYHNVKYFA 200 (237)
T ss_pred CCHHhHHHHH
Confidence 7766665544
No 144
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=24.74 E-value=1.1e+02 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.++.+.+.+.|+.+.++.||.+..+.+++.
T Consensus 21 ~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 21 IEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred HHHHHhhcccceEEEEEccCcccccccccc
Confidence 456677788999999999998887776665
No 145
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.57 E-value=1.2e+02 Score=26.36 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=30.8
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||=+-.+.+ . ++. +. .++.+.+.+.|+++.|++|+.+..+...+
T Consensus 6 li~~DlDGTLl~~~~-----~----~~~-~~---------~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~ 55 (273)
T PRK00192 6 LVFTDLDGTLLDHHT-----Y----SYE-PA---------KPALKALKEKGIPVIPCTSKTAAEVEVLR 55 (273)
T ss_pred EEEEcCcccCcCCCC-----c----CcH-HH---------HHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 578999997764211 1 111 01 34556667788888888888776655443
No 146
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=23.84 E-value=2.3e+02 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=27.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 69 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVh 69 (267)
.-+.-|=|+-+..+.+ -...++++|.++.+++++|-++++|-
T Consensus 166 ~~~F~FM~~~vSsErp---~e~~i~~IA~E~~ei~~kgGkIvvv~ 207 (415)
T COG1915 166 TGEFEFMGSGVSSERP---VETLIEQIAWEIREIRDKGGKIVVVA 207 (415)
T ss_pred CceEEeecCCCCcCCc---HHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3344444444443322 35578899999999999998987774
No 147
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=2e+02 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEECC
Q 024480 49 MAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 49 ~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.+|+.+..+...|.+++++.||
T Consensus 83 e~fA~~l~~~~~~G~~i~f~IGG 105 (155)
T COG1576 83 EEFADFLERLRDDGRDISFLIGG 105 (155)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeC
Confidence 46888899998889899999965
No 148
>PLN02151 trehalose-phosphatase
Probab=23.30 E-value=2.1e+02 Score=26.54 Aligned_cols=67 Identities=6% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHH
Q 024480 165 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 244 (267)
Q Consensus 165 a~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~ 244 (267)
..++...++++++++.|.||=+..-- .+|+... ++.. -..+++.+. .+.++.|++|+....+.++
T Consensus 88 ~~~~~~~~~~~~ll~lDyDGTL~PIv-~~P~~A~---~~~~----------~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 152 (354)
T PLN02151 88 EEILHKSEGKQIVMFLDYDGTLSPIV-DDPDRAF---MSKK----------MRNTVRKLA-KCFPTAIVSGRCREKVSSF 152 (354)
T ss_pred HHHHHhhcCCceEEEEecCccCCCCC-CCccccc---CCHH----------HHHHHHHHh-cCCCEEEEECCCHHHHHHH
Confidence 34445567788999999999876210 0111111 1110 023333333 4568999999998888877
Q ss_pred hc
Q 024480 245 IQ 246 (267)
Q Consensus 245 l~ 246 (267)
+.
T Consensus 153 ~~ 154 (354)
T PLN02151 153 VK 154 (354)
T ss_pred cC
Confidence 64
No 149
>PRK10628 LigB family dioxygenase; Provisional
Probab=23.14 E-value=1e+02 Score=26.95 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHh
Q 024480 43 IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAA 81 (267)
Q Consensus 43 ~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~ 81 (267)
.+.+.--++-+.|+.|+++| |+|.|+|++.|-+...
T Consensus 122 ~~~~~h~~lG~aL~~LR~~g---vLIigSG~~~HNL~~~ 157 (246)
T PRK10628 122 KPAAWHFEMGRKLAALRDEG---IMLVASGNVVHNLRTV 157 (246)
T ss_pred CCHHHHHHHHHHHHhhccCC---EEEEecCccccchhhh
Confidence 36667778999999998776 4455788887776544
No 150
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=23.08 E-value=79 Score=19.47 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 44 DPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 44 ~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
+.+.+..+ |..+.. .++++|||
T Consensus 19 d~~~L~~~---i~~~~p--~~vilVHG 40 (43)
T PF07521_consen 19 DREELLEF---IEQLNP--RKVILVHG 40 (43)
T ss_dssp BHHHHHHH---HHHHCS--SEEEEESS
T ss_pred CHHHHHHH---HHhcCC--CEEEEecC
Confidence 55555555 444422 69999997
No 151
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.73 E-value=1.1e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=25.7
Q ss_pred EEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 26 VLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 26 iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
++.=+-|+++.++.. . ..+..+.|.++.+.|+++++++|-
T Consensus 2 i~~DlDGTLL~~~~~--~----~~~~~~~l~~l~~~gi~~~i~TgR 41 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY--D----WQPAAPWLTRLQEAGIPVILCTSK 41 (221)
T ss_pred EEEeCCCCCcCCCCC--C----cHHHHHHHHHHHHCCCeEEEEcCC
Confidence 455567887764321 1 122346677788899999999854
No 152
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.62 E-value=1.6e+02 Score=23.73 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=24.6
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECC
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG 71 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGg 71 (267)
.+++-..|-.++. ..+++.|.++...|. +++.+.||
T Consensus 70 ~i~Ld~~Gk~~sS-----------~~fA~~l~~~~~~g~~~i~F~IGG 106 (155)
T PF02590_consen 70 VILLDERGKQLSS-----------EEFAKKLERWMNQGKSDIVFIIGG 106 (155)
T ss_dssp EEEE-TTSEE--H-----------HHHHHHHHHHHHTTS-EEEEEE-B
T ss_pred EEEEcCCCccCCh-----------HHHHHHHHHHHhcCCceEEEEEec
Confidence 4666667776653 468888999888887 89999964
No 153
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=22.41 E-value=2e+02 Score=24.89 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=9.5
Q ss_pred EEeeccCccccC
Q 024480 177 LKATNVDGVYDD 188 (267)
Q Consensus 177 i~lTDVdGVy~~ 188 (267)
.++.|+||++-.
T Consensus 3 ~i~~D~DGtl~~ 14 (257)
T TIGR01458 3 GVLLDISGVLYI 14 (257)
T ss_pred EEEEeCCCeEEe
Confidence 477899999864
No 154
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=21.91 E-value=2.1e+02 Score=25.01 Aligned_cols=13 Identities=23% Similarity=-0.064 Sum_probs=9.9
Q ss_pred EEeeccCccccCC
Q 024480 177 LKATNVDGVYDDN 189 (267)
Q Consensus 177 i~lTDVdGVy~~d 189 (267)
.++.|+||++-..
T Consensus 4 ~~~~D~DGtl~~~ 16 (279)
T TIGR01452 4 GFIFDCDGVLWLG 16 (279)
T ss_pred EEEEeCCCceEcC
Confidence 4667999998654
No 155
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.22 E-value=1.3e+02 Score=26.10 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=29.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
.+.++.=+-|+++.++. .+.. +..+.|+++++.|+++++.+|
T Consensus 7 ~~lI~~DlDGTLL~~~~--~i~~----~~~~ai~~l~~~Gi~~viaTG 48 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHT--YDWQ----PAAPWLTRLREAQVPVILCSS 48 (271)
T ss_pred CeEEEEeCccCCcCCCC--cCcH----HHHHHHHHHHHcCCeEEEEcC
Confidence 45788889999886432 1222 344567888889999999975
No 156
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.73 E-value=3.6e+02 Score=23.47 Aligned_cols=73 Identities=19% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcC
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng 235 (267)
-|++-|.-....|+.+||+.+.+.|. =|-.-.. ... . ..|+..+ ..+++.|.+.|+.|.--.|
T Consensus 128 LFiDPd~~qi~~A~~~GAd~VELhTG---~Ya~a~~---~~~----~-~~el~~i------~~aa~~a~~~GL~VnAGHg 190 (234)
T cd00003 128 LFIDPDPEQIEAAKEVGADRVELHTG---PYANAYD---KAE----R-EAELERI------AKAAKLARELGLGVNAGHG 190 (234)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCCC---chh----H-HHHHHHH------HHHHHHHHHcCCEEecCCC
Confidence 37899999999999999999999994 4543110 000 0 1122221 4667778888888877777
Q ss_pred CCCCcHHHHh
Q 024480 236 NQPGNIAKAI 245 (267)
Q Consensus 236 ~~~~~i~~~l 245 (267)
.+.+++..+.
T Consensus 191 Lny~Nv~~i~ 200 (234)
T cd00003 191 LNYENVKPIA 200 (234)
T ss_pred CCHHHHHHHH
Confidence 6666665443
No 157
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.19 E-value=2.8e+02 Score=24.49 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=27.1
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCc
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGG 72 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG 72 (267)
|.++++.|=+||.+-.+ .-.+.........|.+.|++++.+-..+
T Consensus 1 ~~~~~i~vl~gg~s~e~-------~vsl~s~~~v~~aL~~~g~~~~~~~~~~ 45 (296)
T PRK14569 1 MKNEKIVVLYGGDSPER-------EVSLKSGKAVLDSLISQGYDAVGVDASG 45 (296)
T ss_pred CCCcEEEEEeCCCCCch-------HhHHHHHHHHHHHHHHcCCEEEEEcCCc
Confidence 34557888899987543 2233333344455667899988775333
No 158
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.14 E-value=4.3e+02 Score=20.61 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 171 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l 171 (267)
|..++.+.|++.|..+....... ++ ...+.+.+.++++...+.|++|. .....-|.+...++...
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~-Dd--~~~i~~~l~~~~~~~DliIttGG--~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVP-DD--PEEIREILRKAVDEADVVLTTGG--TGVGPRDVTPEALEELG 92 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecC-CC--HHHHHHHHHHHHhCCCEEEECCC--CCCCCCccHHHHHHHhC
Confidence 44456678888998765332111 11 01123334455666678888764 44567799999998876
No 159
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=20.09 E-value=3.4e+02 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-c--hHHhhh
Q 024480 41 QNIDPKITMAIAREVASVTRLGIEVAIVVGG-G--NIFRGA 78 (267)
Q Consensus 41 ~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G--~~~~~~ 78 (267)
+.++.+.+..+.+.+.++.+...++||+.|+ | .|..+.
T Consensus 26 Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~ 66 (261)
T PRK11423 26 NALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGH 66 (261)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCc
Confidence 4678889999988888776555899999974 2 455443
Done!