Query 024480
Match_columns 267
No_of_seqs 186 out of 1273
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwy_A Uridylate kinase; allos 100.0 4.9E-48 1.7E-52 341.4 26.8 236 18-255 45-280 (281)
2 3ek6_A Uridylate kinase; UMPK 100.0 5.4E-48 1.8E-52 335.8 26.2 234 22-256 8-241 (243)
3 1ybd_A Uridylate kinase; alpha 100.0 1.9E-47 6.5E-52 331.5 27.0 234 22-256 6-239 (239)
4 2a1f_A Uridylate kinase; PYRH, 100.0 3.5E-47 1.2E-51 331.6 26.0 235 22-257 7-241 (247)
5 4a7w_A Uridylate kinase; trans 100.0 6.7E-47 2.3E-51 328.4 26.3 233 22-255 6-240 (240)
6 1z9d_A Uridylate kinase, UK, U 100.0 1.3E-46 4.5E-51 328.9 26.4 240 22-262 6-246 (252)
7 2va1_A Uridylate kinase; UMPK, 100.0 9E-47 3.1E-51 330.6 24.9 234 20-255 21-255 (256)
8 2jjx_A Uridylate kinase, UMP k 100.0 1.6E-44 5.4E-49 316.2 27.0 236 22-258 11-248 (255)
9 2j4j_A Uridylate kinase; trans 100.0 3.7E-42 1.3E-46 296.0 22.2 214 24-256 1-225 (226)
10 2brx_A Uridylate kinase; UMP k 100.0 6E-42 2E-46 298.0 19.7 220 19-256 15-244 (244)
11 2j5v_A Glutamate 5-kinase; pro 100.0 2E-39 6.9E-44 296.8 25.2 233 22-260 3-261 (367)
12 2ij9_A Uridylate kinase; struc 100.0 2.1E-39 7.3E-44 277.4 21.3 209 24-255 1-219 (219)
13 3ll9_A Isopentenyl phosphate k 100.0 3.1E-38 1.1E-42 278.2 19.7 227 23-255 2-266 (269)
14 2ako_A Glutamate 5-kinase; str 100.0 6E-38 2E-42 273.8 20.5 224 23-255 1-251 (251)
15 3ll5_A Gamma-glutamyl kinase r 100.0 2.7E-38 9.3E-43 275.7 17.1 222 23-255 3-249 (249)
16 2ogx_A Molybdenum storage prot 100.0 3.6E-37 1.2E-41 272.3 24.5 216 25-257 41-272 (276)
17 2ap9_A NAG kinase, acetylgluta 100.0 8.2E-37 2.8E-41 273.1 23.3 229 20-259 22-293 (299)
18 2ogx_B Molybdenum storage prot 100.0 3.7E-36 1.2E-40 265.2 25.7 225 15-256 28-269 (270)
19 2rd5_A Acetylglutamate kinase- 100.0 2.8E-36 9.6E-41 269.5 23.3 226 20-256 33-298 (298)
20 2v5h_A Acetylglutamate kinase; 100.0 7.1E-36 2.4E-40 269.2 21.8 227 20-257 46-311 (321)
21 3k4o_A Isopentenyl phosphate k 100.0 1.9E-36 6.6E-41 266.3 17.6 219 25-257 8-265 (266)
22 3d40_A FOMA protein; fosfomyci 100.0 6.9E-37 2.4E-41 271.8 14.6 229 23-258 23-284 (286)
23 3l76_A Aspartokinase; alloster 100.0 4.7E-35 1.6E-39 283.3 23.3 219 23-258 1-246 (600)
24 3ab4_A Aspartokinase; aspartat 100.0 1.1E-34 3.6E-39 270.7 24.5 218 23-257 1-244 (421)
25 2bty_A Acetylglutamate kinase; 100.0 5.7E-35 2E-39 259.1 20.4 222 21-257 19-280 (282)
26 2egx_A Putative acetylglutamat 100.0 2.9E-34 9.9E-39 252.9 21.3 215 25-255 1-269 (269)
27 2buf_A Acetylglutamate kinase; 100.0 8.3E-34 2.8E-38 253.7 24.2 225 20-258 23-298 (300)
28 1gs5_A Acetylglutamate kinase; 100.0 1.7E-33 5.9E-38 246.5 20.7 218 23-255 2-257 (258)
29 2we5_A Carbamate kinase 1; arg 100.0 4.7E-33 1.6E-37 249.8 21.1 224 23-255 2-309 (310)
30 2e9y_A Carbamate kinase; trans 100.0 7.6E-33 2.6E-37 249.0 19.8 227 23-256 4-315 (316)
31 3l86_A Acetylglutamate kinase; 100.0 5E-32 1.7E-36 239.0 19.9 212 15-256 29-278 (279)
32 1e19_A Carbamate kinase-like c 100.0 3.7E-32 1.3E-36 244.3 19.3 227 23-256 2-314 (314)
33 2cdq_A Aspartokinase; aspartat 100.0 1.3E-31 4.5E-36 254.2 22.0 219 22-258 25-325 (510)
34 3c1m_A Probable aspartokinase; 100.0 1.6E-31 5.3E-36 252.5 20.6 217 25-258 2-302 (473)
35 3d2m_A Putative acetylglutamat 100.0 2.1E-31 7E-36 250.8 20.1 223 20-258 40-305 (456)
36 2j0w_A Lysine-sensitive aspart 100.0 5.7E-31 2E-35 246.8 19.9 216 23-258 2-293 (449)
37 3tvi_A Aspartokinase; structur 100.0 2.1E-30 7.2E-35 242.2 21.3 211 24-258 3-280 (446)
38 4axs_A Carbamate kinase; oxido 100.0 8.3E-30 2.8E-34 229.4 23.3 229 19-256 20-332 (332)
39 3zzh_A Acetylglutamate kinase; 100.0 1.2E-29 4.1E-34 226.3 20.1 218 24-259 49-304 (307)
40 3kzf_A Carbamate kinase; argin 100.0 5.5E-29 1.9E-33 221.0 18.4 227 23-257 5-317 (317)
41 4ab7_A Protein Arg5,6, mitocho 100.0 2.1E-28 7.1E-33 228.8 19.4 216 24-257 49-302 (464)
42 3s6g_A N-acetylglutamate kinas 100.0 1.1E-28 3.6E-33 231.1 16.5 218 24-257 59-311 (460)
43 3s6k_A Acetylglutamate kinase; 99.9 3.5E-28 1.2E-32 227.8 6.5 218 24-257 62-314 (467)
44 3ewi_A N-acylneuraminate cytid 55.0 20 0.00068 27.9 5.3 58 177-246 11-69 (168)
45 2pr7_A Haloacid dehalogenase/e 52.4 34 0.0012 24.3 6.1 42 23-71 2-43 (137)
46 2obb_A Hypothetical protein; s 52.0 5.3 0.00018 30.7 1.4 48 21-70 1-48 (142)
47 3pdw_A Uncharacterized hydrola 48.7 28 0.00094 28.4 5.6 41 23-70 6-46 (266)
48 3kbq_A Protein TA0487; structu 48.0 66 0.0022 25.3 7.4 68 102-174 24-91 (172)
49 3f9r_A Phosphomannomutase; try 44.5 25 0.00086 29.0 4.6 51 177-246 6-56 (246)
50 1rlm_A Phosphatase; HAD family 41.3 36 0.0012 28.1 5.1 45 22-71 2-46 (271)
51 1xvi_A MPGP, YEDP, putative ma 40.6 44 0.0015 27.7 5.6 51 176-245 10-60 (275)
52 1k1e_A Deoxy-D-mannose-octulos 40.2 22 0.00077 27.4 3.5 59 177-245 10-69 (180)
53 1rkq_A Hypothetical protein YI 40.1 35 0.0012 28.4 4.9 50 177-245 7-56 (282)
54 3f9r_A Phosphomannomutase; try 39.2 47 0.0016 27.2 5.5 45 21-71 2-46 (246)
55 4fzw_A 2,3-dehydroadipyl-COA h 39.1 47 0.0016 27.7 5.5 33 41-73 27-60 (258)
56 2p9j_A Hypothetical protein AQ 38.9 25 0.00085 26.3 3.5 59 177-245 11-70 (162)
57 3qgm_A P-nitrophenyl phosphata 36.8 24 0.00083 28.8 3.3 43 22-71 7-49 (268)
58 1rkq_A Hypothetical protein YI 34.4 25 0.00084 29.4 3.0 43 23-71 5-47 (282)
59 3pgv_A Haloacid dehalogenase-l 34.3 23 0.00079 29.5 2.8 46 19-70 17-62 (285)
60 3mpo_A Predicted hydrolase of 33.1 35 0.0012 28.0 3.8 45 21-71 3-47 (279)
61 3dao_A Putative phosphatse; st 32.4 46 0.0016 27.6 4.4 48 19-71 17-64 (283)
62 1l6r_A Hypothetical protein TA 32.1 56 0.0019 26.3 4.8 44 22-71 4-47 (227)
63 2b30_A Pvivax hypothetical pro 30.1 40 0.0014 28.5 3.7 51 177-245 29-79 (301)
64 1wr8_A Phosphoglycolate phosph 30.0 31 0.0011 27.7 2.8 43 23-71 3-45 (231)
65 3epr_A Hydrolase, haloacid deh 29.9 37 0.0013 27.7 3.4 43 22-71 4-46 (264)
66 3fzq_A Putative hydrolase; YP_ 29.6 81 0.0028 25.4 5.5 51 177-246 7-57 (274)
67 2b30_A Pvivax hypothetical pro 28.9 48 0.0016 28.0 3.9 44 22-71 26-70 (301)
68 1xvi_A MPGP, YEDP, putative ma 28.3 30 0.001 28.8 2.5 45 21-71 7-51 (275)
69 3r4c_A Hydrolase, haloacid deh 28.0 45 0.0015 27.1 3.6 45 21-70 10-54 (268)
70 4dw8_A Haloacid dehalogenase-l 28.0 34 0.0012 28.0 2.8 45 21-71 3-47 (279)
71 2r8e_A 3-deoxy-D-manno-octulos 27.8 54 0.0019 25.3 3.8 11 178-188 29-39 (188)
72 1to0_A Hypothetical UPF0247 pr 27.7 81 0.0028 24.7 4.8 36 25-71 73-109 (167)
73 2fts_A Gephyrin; gephyrin, neu 27.5 2.8E+02 0.0097 24.8 9.1 71 102-178 209-279 (419)
74 4fak_A Ribosomal RNA large sub 26.6 99 0.0034 24.1 5.0 39 24-74 76-115 (163)
75 1ns5_A Hypothetical protein YB 26.5 68 0.0023 24.8 4.0 38 25-74 69-106 (155)
76 1nrw_A Hypothetical protein, h 26.5 68 0.0023 26.5 4.5 51 177-246 6-56 (288)
77 1wr8_A Phosphoglycolate phosph 26.4 73 0.0025 25.4 4.5 50 177-245 5-54 (231)
78 2pq0_A Hypothetical conserved 26.1 61 0.0021 26.2 4.0 44 22-71 2-45 (258)
79 1mkz_A Molybdenum cofactor bio 25.0 2.3E+02 0.0079 21.8 7.1 66 102-172 29-96 (172)
80 1xpj_A Hypothetical protein; s 24.5 95 0.0033 22.4 4.5 44 24-71 2-49 (126)
81 3dnp_A Stress response protein 24.5 35 0.0012 28.2 2.2 45 21-71 4-48 (290)
82 4fu0_A D-alanine--D-alanine li 24.5 50 0.0017 28.7 3.3 41 21-68 1-41 (357)
83 2azn_A HTP reductase, putative 23.6 74 0.0025 25.5 4.0 30 51-80 131-160 (219)
84 2zqe_A MUTS2 protein; alpha/be 23.5 1.2E+02 0.004 20.6 4.4 28 46-73 16-44 (83)
85 1vkf_A Glycerol uptake operon 23.2 1.4E+02 0.0047 23.9 5.4 43 11-69 20-62 (188)
86 3fzq_A Putative hydrolase; YP_ 23.0 49 0.0017 26.8 2.8 43 23-71 5-47 (274)
87 1y5e_A Molybdenum cofactor bio 23.0 2.5E+02 0.0086 21.4 6.9 66 102-172 32-99 (169)
88 3nvb_A Uncharacterized protein 22.8 1.1E+02 0.0036 27.5 5.1 78 160-246 207-291 (387)
89 4dw8_A Haloacid dehalogenase-l 22.6 1E+02 0.0036 24.9 4.9 50 177-245 7-56 (279)
90 3l7y_A Putative uncharacterize 22.6 49 0.0017 27.7 2.8 45 21-70 35-79 (304)
91 3dao_A Putative phosphatse; st 22.2 91 0.0031 25.7 4.4 30 217-246 45-74 (283)
92 3g64_A Putative enoyl-COA hydr 21.7 2.3E+02 0.0079 23.5 6.9 37 41-77 39-77 (279)
93 1ydh_A AT5G11950; structural g 21.5 1E+02 0.0035 25.1 4.4 39 145-187 108-148 (216)
94 2amy_A PMM 2, phosphomannomuta 21.3 1.3E+02 0.0045 24.0 5.1 43 21-70 4-46 (246)
95 2pjk_A 178AA long hypothetical 21.2 2.9E+02 0.0099 21.4 7.1 66 102-172 41-108 (178)
96 3pgv_A Haloacid dehalogenase-l 21.0 1.1E+02 0.0038 25.1 4.8 29 217-245 44-72 (285)
97 2pq0_A Hypothetical conserved 20.9 1.1E+02 0.0038 24.5 4.7 26 218-243 27-52 (258)
98 1rcu_A Conserved hypothetical 20.6 1.2E+02 0.0041 24.3 4.5 27 157-187 129-155 (195)
99 2gd9_A Hypothetical protein YY 20.5 98 0.0034 24.0 4.0 31 50-80 106-136 (189)
100 2rbk_A Putative uncharacterize 20.2 66 0.0023 26.1 3.1 43 24-71 3-45 (261)
101 1zjj_A Hypothetical protein PH 20.1 97 0.0033 25.1 4.1 12 177-188 3-14 (263)
No 1
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.9e-48 Score=341.42 Aligned_cols=236 Identities=52% Similarity=0.868 Sum_probs=206.3
Q ss_pred ccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHH
Q 024480 18 KPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGML 97 (267)
Q Consensus 18 ~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (267)
....+++++|||+||++|++++ +.++.+.+.+++++|++++++|+++|||||||++++++.... .+++....++++++
T Consensus 45 ~~~~~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~-~gl~~~~~d~~g~l 122 (281)
T 3nwy_A 45 AQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ-LGMERTRSDYMGML 122 (281)
T ss_dssp --CCCCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTT-TTCCHHHHHHHHHH
T ss_pred ccCCcCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHh-cCCCccchhHHHHH
Confidence 3445689999999999999766 578999999999999999999999999999999988874322 35776677889999
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 177 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li 177 (267)
++++|+.+++++|.++|+++..|++++..++.++|++.+++++|++|+|||++++.|+++++||++|+++|.+|+||+|+
T Consensus 123 at~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~Li 202 (281)
T 3nwy_A 123 GTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVL 202 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEE
Confidence 99999988999999999999889999988887777777766899999999999988889999999999999999999999
Q ss_pred EeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 178 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 178 ~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|+|||||||++||+.+|++++|+++++.|+.+.|.+.||+.|+..|.++|++++|+|+++|+.|.++|+|+.+||+|.
T Consensus 203 ilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 203 MAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp EEESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred EeeccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999998776777889999999999999999999999999999999999999996
No 2
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=100.00 E-value=5.4e-48 Score=335.79 Aligned_cols=234 Identities=50% Similarity=0.891 Sum_probs=208.9
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||+|||+|++++++.++.+.+++++++|++++++|+++|||||||++++++.. ...+++..+.++++++++++
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~-~~~g~~~~~~d~~g~l~t~~ 86 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGL-AASGMDRVTGDHMGMLATVI 86 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTT-SCSSSCHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHcCCCCCCHHHHHHHHHHH
Confidence 47899999999999987766799999999999999999999999999999998655422 22457666678889999999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|+.++.++|.+.|+++..+++++...+.+++..+.+.++|++|+|||++|+.|.++++||++|+++|.+|+||+|+|+||
T Consensus 87 N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 87 NALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 99888899999999999888887654444444455778999999999999888899999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+.+|++++|++++++|+.+.|.+.||++|+..|.++|++++|+|+++|+.+.++|+|+.+||+|.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999987777889999999999999999999999999999999999999999986
No 3
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=1.9e-47 Score=331.54 Aligned_cols=234 Identities=52% Similarity=0.875 Sum_probs=208.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||++++++. +..++++..+.+.++++++.+
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 84 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVM 84 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHH
Confidence 4689999999999997655578999999999999999999999999999999987764 122356666677888899999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|..++.++|.++|+++.++++.+..++.+.|.+.+.+++|+.|.|||++++.|.+++++|++|+++|.+|+||+|+||||
T Consensus 85 ~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTd 164 (239)
T 1ybd_A 85 NALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATN 164 (239)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccccchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeC
Confidence 99887899999999998888887766655555555558899999999999888889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|||||++||+.+|++++|++++++|+.++|.++||++|+++|.++|++++|+|+++|+.+.++|+|+..||+|.+
T Consensus 165 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 165 VDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred CCccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999999998888899999999999999999999999999999999999989999964
No 4
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=3.5e-47 Score=331.61 Aligned_cols=235 Identities=45% Similarity=0.799 Sum_probs=203.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||++++++. +..++++.++.+.++++++.+
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~ 85 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVM 85 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHH
Confidence 4789999999999997544578999999999999999999999999999999977764 222457777788888899999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 181 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTD 181 (267)
|..++.++|.++|+++.++++.+..++.++|.+.++.++|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+||||
T Consensus 86 ~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTD 165 (247)
T 2a1f_A 86 NGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATK 165 (247)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeC
Confidence 99878899999999998898887766654566666678899999999999878889999999999999999999999999
Q ss_pred cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 182 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 182 VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
|||||++||+.+|++++|++++++|+.++|.++||++|+.+|.++|++++|+|+++|+.+.++++|+.+||+|...
T Consensus 166 VdGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 166 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred CCcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999988888999999999999999999999999999999999999999999753
No 5
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=6.7e-47 Score=328.40 Aligned_cols=233 Identities=53% Similarity=0.848 Sum_probs=201.0
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCC-CCCChHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATV 100 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 100 (267)
+++++|||+|||+++++.++.++.+.+++++++|+++++.|+++|||||||++++++... ..| ++....+.+++++++
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-~~G~~~~~~~~~~~~la~~ 84 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-QGGIIRRTSGDYMGMLATV 84 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------CCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-hcCCCCCCCHHHHHHHHHH
Confidence 368999999999999755567899999999999999999999999999999998776532 245 555566788889999
Q ss_pred HHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 101 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 101 ~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
+|+.+++++|.++|++++.+++.+.....+++..+.+.++|++|+|||++|+.|.++++||++|+++|.+|+||+|+|||
T Consensus 85 ~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lT 164 (240)
T 4a7w_A 85 INAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKAT 164 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEcc
Confidence 99999989999999999988877765443433334567899999999999988888999999999999999999999999
Q ss_pred ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC-CcceEEe
Q 024480 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG 255 (267)
Q Consensus 181 DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~-~~GT~I~ 255 (267)
||||||++||+.+|++++|++++++|+.+.|.++||++|+..|.++|++++|+|+++|+++.+++.|+ ++||.|.
T Consensus 165 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 165 KVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp SSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred CCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999999999999888889999999999999999999999999999999988876 5799983
No 6
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=100.00 E-value=1.3e-46 Score=328.86 Aligned_cols=240 Identities=50% Similarity=0.835 Sum_probs=208.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+++++|||||||++++++++.++.+.+.+++++|+.+++.|+++|||||||+++.++. +.+.+++.++.+.++++++.+
T Consensus 6 ~~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~ 84 (252)
T 1z9d_A 6 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVM 84 (252)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHH
Confidence 4689999999999997544578999999999999999999999999999999876653 112357766777788889999
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT- 180 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT- 180 (267)
|..++.++|.++|+++.++++.+..++.++|++.++.++|+.|+|||++|+.|.+++++|++|+++|.+|+||+|+|+|
T Consensus 85 ~~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~ 164 (252)
T 1z9d_A 85 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN 164 (252)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecC
Confidence 9987889999999999888887766554446666667889999999999987888999999999999999999999999
Q ss_pred ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCCCC
Q 024480 181 NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 181 DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
||||||++||+.+|++++|++|++.|+.+.+.++||++|++.|.++|++++|+|+++|+.+.++|+|+..||+|.++.--
T Consensus 165 DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 244 (252)
T 1z9d_A 165 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCD 244 (252)
T ss_dssp SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC---
T ss_pred CCCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCCCC
Confidence 99999999999999999999999999988888999999999999999999999999999999999999899999876554
Q ss_pred cc
Q 024480 261 TV 262 (267)
Q Consensus 261 ~~ 262 (267)
.+
T Consensus 245 ~~ 246 (252)
T 1z9d_A 245 EG 246 (252)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 7
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=9e-47 Score=330.63 Aligned_cols=234 Identities=36% Similarity=0.642 Sum_probs=200.7
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHH
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT 99 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (267)
.++++++|||+||+++++++++.++.+.+.+++++|++++ .|+++|||||||++++++. +..++++..+.+.++++++
T Consensus 21 ~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~ 98 (256)
T 2va1_A 21 MMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMAT 98 (256)
T ss_dssp --CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHH
T ss_pred hhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHH
Confidence 3467899999999999986545789999999999999999 8999999999999977754 2224577666777888888
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEe
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA 179 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~l 179 (267)
.+|..++.++|.++|+++..+++++...+.++|++.++.++|+.|+|||++|..|.++++||++|+++|.+|+||+|+|+
T Consensus 99 ~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~Liil 178 (256)
T 2va1_A 99 IINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMG 178 (256)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEe
Confidence 99998878999999999988988887777666766666789999999999998788999999999999999999999999
Q ss_pred ec-cCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 180 TN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 180 TD-VdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|| |||||++||+.+|++++|++|+++|+.+++.++||++|+..|.++|++++|+|+++|+.+.++|+|+..||+|.
T Consensus 179 TD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 179 KNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp ESSCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred ecccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99 99999999999999999999999998877778999999999999999999999999999999999998999996
No 8
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=100.00 E-value=1.6e-44 Score=316.21 Aligned_cols=236 Identities=43% Similarity=0.744 Sum_probs=204.7
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM 101 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 101 (267)
+.+++|||||||++++++++.++.+.+++++++|+.+++.|+++|||||||++.+++. +..+++++...+.++++++.+
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~~~ 89 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTII 89 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHHHH
Confidence 5689999999999997654678999999999999999999999999999999865553 222356655556778888889
Q ss_pred HHHHHHHHHHH-cCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee
Q 024480 102 NAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 180 (267)
Q Consensus 102 ~~~l~~~~l~~-~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lT 180 (267)
|+.++.++|.+ +|+++.++++.+...+.+++....+.++|+.|+|||++|..|++++++|++|+++|.+|+||+|+|||
T Consensus 90 ~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 90 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp HHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEe
Confidence 99878899999 99999888876655443344444555889999999999766678899999999999999999999999
Q ss_pred -ccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 181 -NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 181 -DVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
||||||++||+.+|++++|++|+++|+.++|.++|++.|++.+.++|++++|+|+++|+.+.++|.|+..||+|.++.
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~~ 248 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 248 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESSC
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecCc
Confidence 999999999999999999999999999888999999999999988999999999999999999999988999998753
No 9
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=100.00 E-value=3.7e-42 Score=296.02 Aligned_cols=214 Identities=25% Similarity=0.425 Sum_probs=184.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcCCCCCCChHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
+++|||||||+++++ +.+.+++++++|+.+++.|+++|||||||++++++.. +...++++.+.++++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (226)
T 2j4j_A 1 MNIILKISGKFFDED-----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLN 75 (226)
T ss_dssp CEEEEEECTHHHHTC-----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccccCC-----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 379999999999864 5679999999999999889999999999999888522 2334577667788888999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
+.+++++|.++|++. + .+ ..+.+.++|+.|.|||++| |.+++++|++|+++|.+|+||+|+|||||
T Consensus 76 ~~l~~~~l~~~g~~~---~-----~~----~~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 141 (226)
T 2j4j_A 76 AYLVMFSLQDLAYMH---V-----PQ----SLEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNV 141 (226)
T ss_dssp HHHHHHHHTTSBCSC---C-----CS----SHHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHhCCCC---C-----cC----CHHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeecc
Confidence 998888999999854 1 11 1234668899999999999 67899999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc----C--CC----cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcce
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK----D--LS----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 252 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l----g--~g----~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT 252 (267)
||||++||+.+|++++|+++++.|+.++ | ++ .+|++|+.+|.++|++++|+|+++|+.+.++|+|+..||
T Consensus 142 dGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT 221 (226)
T 2j4j_A 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 (226)
T ss_dssp SSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCE
T ss_pred ceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCce
Confidence 9999999999999999999999998765 3 23 459999999999999999999999999999999999999
Q ss_pred EEec
Q 024480 253 LIGG 256 (267)
Q Consensus 253 ~I~~ 256 (267)
+|.+
T Consensus 222 ~i~~ 225 (226)
T 2j4j_A 222 IIEP 225 (226)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9975
No 10
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=100.00 E-value=6e-42 Score=298.04 Aligned_cols=220 Identities=26% Similarity=0.400 Sum_probs=185.5
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhH-HhcCCCCCCChHHHHHHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGML 97 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~-~~~~~~l~~~~~~~~~~~ 97 (267)
+..+++++||||||+++++++ ++.+.+.+++++|+.+++ |+++|||||||++++++. .+...+++....+.++++
T Consensus 15 ~~~~~k~iViKlGGs~l~~~~---~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~ 90 (244)
T 2brx_A 15 PRGSHMRIVFDIGGSVLVPEN---PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQ 90 (244)
T ss_dssp ----CCEEEEEECHHHHCSSS---CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred hhhcccEEEEEechhhcCCCC---CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHH
Confidence 345578999999999998653 788999999999999999 999999999999988842 233356777677888889
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 024480 98 ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 177 (267)
Q Consensus 98 ~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li 177 (267)
++.+|+.+++++|.++|++. . . +..+.+.++|+.|+|||++| |.+++++|++|+++|.+|+||+|+
T Consensus 91 ~~~~~~~l~~~~l~~~g~~~---~-----~----~~~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~li 156 (244)
T 2brx_A 91 ITRANAMLLIAALREKAYPV---V-----V----EDFWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLV 156 (244)
T ss_dssp HHHHHHHHHHHHHGGGBCSS---C-----B----CSHHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCCC---C-----c----CCHHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEE
Confidence 99999998888899999754 1 1 11234568999999999999 778899999999999999999999
Q ss_pred EeeccCccccCCCCCCCCcccccccCHHHHhhc----CC-----CcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCC
Q 024480 178 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 248 (267)
Q Consensus 178 ~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l----g~-----g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~ 248 (267)
|||||||||++||+.+|++++|++|++.|+.++ |. +.+++.|++.+.+.+++++|+|+++|+.+.++|+|+
T Consensus 157 ilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~ 236 (244)
T 2brx_A 157 VITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGD 236 (244)
T ss_dssp EECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTC
T ss_pred EEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCC
Confidence 999999999999999999999999999988765 32 344888899999899999999999999999999999
Q ss_pred CcceEEec
Q 024480 249 RVGTLIGG 256 (267)
Q Consensus 249 ~~GT~I~~ 256 (267)
..||+|.+
T Consensus 237 ~~GT~i~~ 244 (244)
T 2brx_A 237 HNGTTIEP 244 (244)
T ss_dssp SSSEEECC
T ss_pred CCceEecC
Confidence 89999964
No 11
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=2e-39 Score=296.84 Aligned_cols=233 Identities=20% Similarity=0.303 Sum_probs=161.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC--ChHHHHHHHHH
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--SSADYIGMLAT 99 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 99 (267)
+++++|||||||++++++ +.++.+.+.+++++|+.+++.|+++||||||| ++.++..++ ++. ...+..+++++
T Consensus 3 ~~k~iVIKiGGs~l~~~~-~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg-i~~g~~~lg---~~~~~~~l~~~qa~aa 77 (367)
T 2j5v_A 3 DSQTLVVKLGTSVLTGGS-RRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA-IAAGREHLG---YPELPATIASKQLLAA 77 (367)
T ss_dssp CCCEEEEEECHHHHTTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHHHHHHT---SCCCCSSHHHHHHHHH
T ss_pred CCCEEEEEECcHHhcCCC-CCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH-HHHHHHHcC---CCCCCCCHHHHHHHHH
Confidence 468999999999999764 46899999999999999999999999999776 555666655 443 34455555543
Q ss_pred HH---HHHHHHHHHHHcCCCeeEeeccccccccc--hHHHH--HHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHH
Q 024480 100 VM---NAIFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALR 167 (267)
Q Consensus 100 ~~---~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~--~l~~ll~~g~iPIi~g~-----~g~~~~~sD~~Aa~l 167 (267)
.. ...++.++|.++|+++. +...+..++.. .+++. .+.++|+.|.|||++++ .+..++|||++|+++
T Consensus 78 vGq~~l~~~~~~~l~~~G~~~~-qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~v 156 (367)
T 2j5v_A 78 VGQSRLIQLWEQLFSIYGIHVG-QMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALA 156 (367)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEE-EEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceE-EEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHH
Confidence 32 23456788999999986 55555555543 24443 35578999999999954 235689999999999
Q ss_pred HHhcCCcEEEEeeccCccccCCCCCCCCcccccccCH--HHHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcC
Q 024480 168 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 168 A~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~--~e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng 235 (267)
|.+++||+|+|||||||||++||+.+|++++|+++++ +|+.++ |+++| |++|++.|.++|++++|+|+
T Consensus 157 A~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g 236 (367)
T 2j5v_A 157 AILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAG 236 (367)
T ss_dssp HHHHTCSEEEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEET
T ss_pred HHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999999999999999999999999 776653 57789 77999999999999999999
Q ss_pred CCCCcHHHHhcCCCcceEEecCCCC
Q 024480 236 NQPGNIAKAIQGERVGTLIGGTWNS 260 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~~~~~~ 260 (267)
++|+.+.+++.|+..||+|.+...+
T Consensus 237 ~~~~~L~~~l~g~~~GT~i~~~~~~ 261 (367)
T 2j5v_A 237 SKPGVIGDVMEGISVGTLFHAQATP 261 (367)
T ss_dssp TSTTHHHHHHHTCCCSEEECCCSSC
T ss_pred CCchHHHHHhcCCCCcEEEEcCccc
Confidence 9999999999999999999876544
No 12
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=100.00 E-value=2.1e-39 Score=277.44 Aligned_cols=209 Identities=33% Similarity=0.468 Sum_probs=174.5
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHH-hcCCCCCCChHHHHHHHHHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASA-AGNSGLDRSSADYIGMLATVMN 102 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 102 (267)
+++|||||||+++++ .+.+.+++++|+.+++ |+++|||||||++++++.. +...++++.+.+.++++++.+|
T Consensus 1 ~~iViK~GGs~l~~~------~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 73 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE------SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLN 73 (219)
T ss_dssp CEEEEEECSSTTTTC------HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeChhhhCCh------HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHH
Confidence 379999999999842 6789999999999998 9999999999999888421 2334677777888888999999
Q ss_pred HHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 103 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 103 ~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
..+++.+|+. ++. + . +...+.+.++|+.|.|||++| |.+++++|++|+++|.+|+||+|+|+|||
T Consensus 74 ~~l~~~~~~~-~~~---~-----~----~~~~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdV 138 (219)
T 2ij9_A 74 AMLLISAIPS-AAK---K-----V----PVDFMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNV 138 (219)
T ss_dssp HHHHHHHCTT-BCS---S-----C----CSSHHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHH-hcC---C-----C----cCCHHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCC
Confidence 9988766643 221 1 0 111234668999999999999 67889999999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc----CC--C---cchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceE
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK----DL--S---VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 253 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l----g~--g---~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~ 253 (267)
||||++||+.+|++++|+++++.|+.++ |. + .+|+.|++.+.+.+++++|+|+ +|+.+.++|+|+..||+
T Consensus 139 dGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~ 217 (219)
T 2ij9_A 139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTV 217 (219)
T ss_dssp SSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEE
T ss_pred CceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeE
Confidence 9999999999999999999999998765 32 3 3488999999999999999999 99999999999989999
Q ss_pred Ee
Q 024480 254 IG 255 (267)
Q Consensus 254 I~ 255 (267)
|.
T Consensus 218 i~ 219 (219)
T 2ij9_A 218 IA 219 (219)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 13
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.1e-38 Score=278.18 Aligned_cols=227 Identities=24% Similarity=0.315 Sum_probs=173.7
Q ss_pred cceEEEEeccccccCCC-CCC-CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcCCCCCCCh-------HH
Q 024480 23 WQRVLLKVSGEALAGDH-TQN-IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSS-------AD 92 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~-~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~~~l~~~~-------~~ 92 (267)
.|++|||+||+++++++ +.. ++.+.+.+++++|+.++ +.++|||||||++++.+ .+. ++.... .+
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~---gi~~~~~~~~g~~~~ 76 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEY---RIGSEIENEEDLRRR 76 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHH---TTTSCCCSHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHc---CCCcccccCcccccc
Confidence 57899999999999876 356 89999999999999886 57999999999987654 233 343211 11
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHcCCCeeEeecccccccc--c-hHHH-HHHHHHhhCCCEEEEeCC-----C--C-C
Q 024480 93 YIGMLAT-----VMNAIFLQATMESIGIPTRVQTAFRMSEVA--E-PYIR-RRAVRHLEKGRVVIFAAG-----T--G-N 155 (267)
Q Consensus 93 ~~~~~~~-----~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~--~-~~~~-~~l~~ll~~g~iPIi~g~-----~--g-~ 155 (267)
+.++..+ .+|+. +.++|.++|+++.++++.+...+. + .+++ +.+.++|++|+|||++|+ . + .
T Consensus 77 ~~G~rvT~~~~~~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~ 155 (269)
T 3ll9_A 77 RFGFALTQNWVKKLNSH-VCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKF 155 (269)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSE
T ss_pred cchhhHHHHHHHHHHHH-HHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcc
Confidence 2333333 37775 567999999999988776543211 1 1122 346689999999999984 2 2 2
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--------CCCcc--hHHHHHHHHh
Q 024480 156 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM--DMTAITLCQE 225 (267)
Q Consensus 156 ~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--------g~g~m--k~~aa~~a~~ 225 (267)
.++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|+++++.|+.++ .+++| |+++|..+.+
T Consensus 156 ~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~ 235 (269)
T 3ll9_A 156 SVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAE 235 (269)
T ss_dssp EEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999887543 35678 9999999999
Q ss_pred CCCcEEEEcCCCCCcHHHHhcCCCc-ceEEe
Q 024480 226 NNIPVVVFNLNQPGNIAKAIQGERV-GTLIG 255 (267)
Q Consensus 226 ~Gi~v~I~ng~~~~~i~~~l~g~~~-GT~I~ 255 (267)
+|++++|+|++.|+.+.++|+|+.+ ||+|.
T Consensus 236 ~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 236 KGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp TTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred CCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 9999999999999999999999998 99997
No 14
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=6e-38 Score=273.77 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=174.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcCCCCCC-ChHHHHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR-SSADYIGMLATVM 101 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 101 (267)
+|++|||+||++++ ++. +++.+.+++++++|+.+++. +++||||||| ...++..++ +.. +..+. ++++...
T Consensus 1 ~k~iViKlGGs~l~-~~~-~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg-~~~~~~~~g---~~~~~~~~~-~~l~~~~ 72 (251)
T 2ako_A 1 MKRIVVKVGSHVIS-EEN-TLSFERLKNLVAFLAKLMEK-YEVILVTSAA-ISAGHTKLD---IDRKNLINK-QVLAAIG 72 (251)
T ss_dssp -CEEEEEECHHHHB-CSS-SBCHHHHHHHHHHHHHHHHH-SEEEEEECCH-HHHHHHHCC---CCSSSHHHH-HHHHHHH
T ss_pred CCEEEEEeCcceeC-CCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEECCH-HHHHHHHhC---CccCCchHH-HHHHHHH
Confidence 37899999999999 543 57889999999999999887 9999999877 444555554 332 23332 3344333
Q ss_pred HH---HHHHHHHHHcCCCeeEeeccccccccc--hHHHH-H-HHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHH
Q 024480 102 NA---IFLQATMESIGIPTRVQTAFRMSEVAE--PYIRR-R-AVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCA 169 (267)
Q Consensus 102 ~~---~l~~~~l~~~Gi~~~~~~~~~~~~~~~--~~~~~-~-l~~ll~~g~iPIi~g~~-----g~~~~~sD~~Aa~lA~ 169 (267)
+. .++.++|.++|+++. +...+..++.. .+++. . +..+|+.|+|||+++++ +..++++|++|+++|.
T Consensus 73 q~~l~~~~~~~l~~~G~~~~-~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~ 151 (251)
T 2ako_A 73 QPFLISVYNELLAKFNKLGG-QILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATH 151 (251)
T ss_dssp HHHHHHHHHHHHGGGTCCEE-EEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEE-EEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHH
Confidence 32 235678999999976 33333333322 23433 3 55789999999999642 2347899999999999
Q ss_pred hcCCcEEEEeeccCccccCCCCCCCCcccccccCHH--HHhhc--------CCCcc--hHHHHHHHHhCCCcEEEEcCCC
Q 024480 170 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQ 237 (267)
Q Consensus 170 ~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~--e~~~l--------g~g~m--k~~aa~~a~~~Gi~v~I~ng~~ 237 (267)
+|+||+|+|||||||||++||+.+|++++|+++++. |+.++ ++++| |++|+..|.++|++++|+|+++
T Consensus 152 ~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~ 231 (251)
T 2ako_A 152 FFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFD 231 (251)
T ss_dssp HTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred hcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 999999999999999999999999999999999998 76543 46777 8999999999999999999999
Q ss_pred CCcHHH--HhcCCCcceEEe
Q 024480 238 PGNIAK--AIQGERVGTLIG 255 (267)
Q Consensus 238 ~~~i~~--~l~g~~~GT~I~ 255 (267)
|+.+.+ +|+|+..||+|.
T Consensus 232 ~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 232 LSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp CHHHHHHHHSCCCCSSEEEC
T ss_pred hhhhhhhHHhcCCCCceEeC
Confidence 999999 999998999984
No 15
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=2.7e-38 Score=275.69 Aligned_cols=222 Identities=19% Similarity=0.278 Sum_probs=172.6
Q ss_pred cceEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCCeEE-EEECCchHHhhh-HHhcCCCCCCCh--HHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGIEVA-IVVGGGNIFRGA-SAAGNSGLDRSS--ADYIGML 97 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~~vV-iVhGgG~~~~~~-~~~~~~~l~~~~--~~~~~~~ 97 (267)
+|++|||+||+++++++ ++.++.+.+++++++|+. |+++| ||||||++++.+ .++ ++++.. .+...+.
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~~---gi~~~~~~~d~~gl~ 75 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEF---GLPGPKNPRSSIGYS 75 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHHH---TCSEECCHHHHHHHH
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHHh---CCCcCCCccccccHH
Confidence 78999999999999865 467899999999999975 89999 999999997763 333 455432 2333322
Q ss_pred H-----HHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCC----C--CCCCCcHHHHHH
Q 024480 98 A-----TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT----G--NPFFTTDTAAAL 166 (267)
Q Consensus 98 ~-----~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~----g--~~~~~sD~~Aa~ 166 (267)
. ..+|+.++ ++|.++|+++.++++.+.....+. ..+.+.++|++|+|||++|+. + ..++++|++|++
T Consensus 76 ~t~~~~~~ln~~~v-~~l~~~G~~a~~l~~~~~~~~g~v-~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~ 153 (249)
T 3ll5_A 76 IVHRDMENLDLMVI-DAMIEMGMRPISVPISALRYDGRF-DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMAD 153 (249)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCEEECCGGGSCBSSSB-CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCcEEEEcHHHcccccEE-cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHH
Confidence 2 26777766 789999999998877665433332 113466899999999999741 1 246899999999
Q ss_pred HHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-----cCCCcc--hHHHHHHH-HhCCCcEEEEcCCCC
Q 024480 167 RCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----KDLSVM--DMTAITLC-QENNIPVVVFNLNQP 238 (267)
Q Consensus 167 lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-----lg~g~m--k~~aa~~a-~~~Gi~v~I~ng~~~ 238 (267)
+|.+|+||+|+|+|||||||++||+.+|++++++++.. ++.. ..+|+| |+++|..+ .++|++++|+||++|
T Consensus 154 lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~ 232 (249)
T 3ll5_A 154 MAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHP 232 (249)
T ss_dssp HHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-------------HHHHHHHHHHHTTCTTCEEEEETTSG
T ss_pred HHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999952 2221 246788 89999998 899999999999999
Q ss_pred CcHHHHhcCCCc-ceEEe
Q 024480 239 GNIAKAIQGERV-GTLIG 255 (267)
Q Consensus 239 ~~i~~~l~g~~~-GT~I~ 255 (267)
+++.+ |.|+.+ ||+|.
T Consensus 233 ~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 233 ERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp GGGGG-TTSTTCCSEEEC
T ss_pred hHHHH-hCCCCCCCEEeC
Confidence 99999 999988 99984
No 16
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=3.6e-37 Score=272.33 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=177.1
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhc-CCCCCCChHHHHHHHHHHHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNA 103 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 103 (267)
++||||||| ++++ +.+.+.+++++|+.++ .|+++|||||||++++.+...+ ..+++....+.+++.++.+|.
T Consensus 41 ~iVIKiGGs-l~~~-----~~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~ 113 (276)
T 2ogx_A 41 LQVVKIGGR-VMDR-----GADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNG 113 (276)
T ss_dssp EEEEEECHH-HHTT-----THHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChh-hcCC-----CHHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999 8853 2678999999999998 7999999999999877654332 145655556666666777888
Q ss_pred HHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCC-----C-----CCCCCcHHHHHHHHHhcCC
Q 024480 104 IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGT-----G-----NPFFTTDTAAALRCAEINA 173 (267)
Q Consensus 104 ~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~-----g-----~~~~~sD~~Aa~lA~~l~A 173 (267)
.+++..+.+.|++.... ....+.+.++|++|+|||++|+. + .+++++|++|+++|.+|+|
T Consensus 114 ~l~~~ll~~~g~~~v~~----------~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~A 183 (276)
T 2ogx_A 114 HILAAMLASEGVSYVEH----------PTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGA 183 (276)
T ss_dssp HHHHHHHGGGTCCBCCH----------HHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcccc----------cChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCC
Confidence 87776666788864311 11123356889999999999952 1 2579999999999999999
Q ss_pred cEEEEeeccCccccCCCC--CCCCcccccccCHHHHhhc-CCCcchHHHHHHHH--hCCCcEEEEcCCCCCcHHHHhcCC
Q 024480 174 EVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSK-DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGE 248 (267)
Q Consensus 174 d~Li~lTDVdGVy~~dP~--~~~~a~li~~Is~~e~~~l-g~g~mk~~aa~~a~--~~Gi~v~I~ng~~~~~i~~~l~g~ 248 (267)
|+|+|||||||||++||+ .+|++++|+++++.|+.++ ++++|++++...+. +.|++++|+|+++|+.+.++|.|+
T Consensus 184 d~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 263 (276)
T 2ogx_A 184 AGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGE 263 (276)
T ss_dssp SEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTC
T ss_pred CEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCC
Confidence 999999999999999998 8999999999999999887 78999777766655 568899999999999999999999
Q ss_pred CcceEEecC
Q 024480 249 RVGTLIGGT 257 (267)
Q Consensus 249 ~~GT~I~~~ 257 (267)
..||+|.++
T Consensus 264 ~~GT~i~~~ 272 (276)
T 2ogx_A 264 HVGTLIRTG 272 (276)
T ss_dssp CCSEEEECS
T ss_pred CCceEEccC
Confidence 899999865
No 17
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=8.2e-37 Score=273.07 Aligned_cols=229 Identities=19% Similarity=0.214 Sum_probs=178.8
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCCC---h
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRS---S 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~~---~ 90 (267)
.++++++||||||++++ +.+.+..++++|+.+++.|+++|||||||++.+. +..++. .+++.. +
T Consensus 22 ~~~~k~iViKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~ 94 (299)
T 2ap9_A 22 QLHGKVVVVKYGGNAMT-------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEV 94 (299)
T ss_dssp HHTTCEEEEEECTHHHH-------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHH
T ss_pred HhCCCeEEEEECchhhC-------CchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHH
Confidence 35678999999999998 4568889999999999999999999999986544 333331 122222 2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHcCCCeeEeecccccccc-ch-------------H------HH-HHHHHHhhCCCEEE
Q 024480 91 ADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EP-------------Y------IR-RRAVRHLEKGRVVI 148 (267)
Q Consensus 91 ~~~~~~~-~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~~-------------~------~~-~~l~~ll~~g~iPI 148 (267)
.+.+.++ ...++.. ++++|.++|+++..++..+...+. ++ | ++ +.+.++|++|+|||
T Consensus 95 l~~~~~~~~G~l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpV 173 (299)
T 2ap9_A 95 LDVARMVLFGQVGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPV 173 (299)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhhHHHHH-HHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEE
Confidence 3334443 2245665 568999999999887765532111 00 0 22 34568999999999
Q ss_pred EeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--hHH
Q 024480 149 FAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMT 218 (267)
Q Consensus 149 i~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m--k~~ 218 (267)
++++ .|..+ +++|++|+++|.+|+||+|+|||||||||++||+ ++++|++|+++|+.++ ++|+| |++
T Consensus 174 v~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~ 250 (299)
T 2ap9_A 174 VSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVE 250 (299)
T ss_dssp EESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHH
T ss_pred ECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHH
Confidence 9985 24444 5999999999999999999999999999999997 4789999999998764 78899 788
Q ss_pred HHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCCC
Q 024480 219 AITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 219 aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~~ 259 (267)
|+..+.++|++ ++|+|+++|+++ .++|+|++.||+|.++..
T Consensus 251 aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~~ 293 (299)
T 2ap9_A 251 ACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGEG 293 (299)
T ss_dssp HHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCCS
T ss_pred HHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCCC
Confidence 99999999998 999999999997 789999999999987653
No 18
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=3.7e-36 Score=265.18 Aligned_cols=225 Identities=20% Similarity=0.323 Sum_probs=172.0
Q ss_pred CCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhhHHhcC-CCCCCChHHH
Q 024480 15 GMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADY 93 (267)
Q Consensus 15 ~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~~~~-~~l~~~~~~~ 93 (267)
.++..+|..+++|||+|||+++++ +.+.+.+++++|+.+++. +++|||||||.+++.+..++. .+++....+.
T Consensus 28 ~~~~~~~m~~~iVIKlGGs~l~~~-----~~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~ 101 (270)
T 2ogx_B 28 AAADFRILPDATVIKIGGQSVIDR-----GRAAVYPLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQ 101 (270)
T ss_dssp TSCCCCSSTTEEEEEECTTTTGGG-----CHHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ccchhhhccCeEEEEechHHhCCC-----CHHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHH
Confidence 344455655699999999999864 267899999999999876 899999999998876554331 3454333444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCC------------CCCCCcH
Q 024480 94 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTD 161 (267)
Q Consensus 94 ~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g------------~~~~~sD 161 (267)
..+.+..++..+++++|.++|++.. +..++. .+.++|++|+|||++|+.+ ++++++|
T Consensus 102 ~~~~a~G~~~l~~~~~l~~~G~~~v-----t~~d~~------~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D 170 (270)
T 2ogx_B 102 LGSSVADQNAAMLGQLLAKHGIPVV-----GGAGLS------AVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTD 170 (270)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCBC-----CSSTTC------HHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee-----cHhhHH------HHHHHHhCCCEEEEeCCccccccccccccccCCCCCcH
Confidence 4444444566666777888898732 112221 2567999999999998621 3569999
Q ss_pred HHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhcC-C-CcchHHHHHHH--HhCCCcEEEEcCCC
Q 024480 162 TAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD-L-SVMDMTAITLC--QENNIPVVVFNLNQ 237 (267)
Q Consensus 162 ~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg-~-g~mk~~aa~~a--~~~Gi~v~I~ng~~ 237 (267)
++|+++|.+|+||+|+|+|||||||++||+.+|++++|++++++|+.++. . ..++......+ +..+++++|+|+++
T Consensus 171 ~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~ 250 (270)
T 2ogx_B 171 AGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLV 250 (270)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTS
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCC
Confidence 99999999999999999999999999999999999999999999988762 1 23443222222 23577999999999
Q ss_pred CCcHHHHhcCCCcceEEec
Q 024480 238 PGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 238 ~~~i~~~l~g~~~GT~I~~ 256 (267)
|+.+.++|+|+..||+|.+
T Consensus 251 ~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 251 PGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp TTHHHHHHTTCCCSEEEEC
T ss_pred chHHHHHHcCCCCCeEecC
Confidence 9999999999999999975
No 19
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=2.8e-36 Score=269.46 Aligned_cols=226 Identities=16% Similarity=0.301 Sum_probs=176.3
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~---~~ 90 (267)
.++.+++||||||++++ +.+.+.+++++|+.+++.|+++|||||||++.+.. ..++. .+++. .+
T Consensus 33 ~~~~k~iVIKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~ 105 (298)
T 2rd5_A 33 KFRGKTIVVKYGGAAMT-------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATT 105 (298)
T ss_dssp HTTTCEEEEEECTHHHH-------CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHH
T ss_pred HhcCCEEEEEECchhhC-------ChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHH
Confidence 36688999999999998 45688999999999999999999999998876443 33331 11111 23
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc-----------cccc----hHHHH-HHHHHhhCCCEEEEeCC-
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVAE----PYIRR-RAVRHLEKGRVVIFAAG- 152 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~~----~~~~~-~l~~ll~~g~iPIi~g~- 152 (267)
.+.++++. ..+|.. +...|.++|+++..+++.+.. |+.. .+++. .+.++|++|+|||++++
T Consensus 106 l~~~~~~~~G~~n~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~ 184 (298)
T 2rd5_A 106 MEIVSMVLVGKVNKN-LVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVA 184 (298)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEE
T ss_pred HHHHHHHHhchHHHH-HHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCee
Confidence 45555543 345654 567999999998877654321 1110 11232 35679999999999984
Q ss_pred ---CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHH
Q 024480 153 ---TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAIT 221 (267)
Q Consensus 153 ---~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~ 221 (267)
.|..+ +++|++|+++|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.++ ++++| |++|+.
T Consensus 185 ~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~ 261 (298)
T 2rd5_A 185 ADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCI 261 (298)
T ss_dssp ECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHH
T ss_pred ECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHH
Confidence 34444 5999999999999999999999999999999997 4 899999999988764 46778 789999
Q ss_pred HHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEec
Q 024480 222 LCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 256 (267)
Q Consensus 222 ~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~ 256 (267)
.+.++|++ ++|+|++.|+.+ .++|+|+..||+|.+
T Consensus 262 ~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 262 RSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 99999998 999999999999 799999999999964
No 20
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=7.1e-36 Score=269.23 Aligned_cols=227 Identities=18% Similarity=0.280 Sum_probs=176.2
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCC---CCh
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLD---RSS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~---~~~ 90 (267)
.++++++|||+||++++ +.+.+.+++++|+.+++.|+++|||||||++.+.. ..++. .|++ +.+
T Consensus 46 ~~~~k~iVIKlGGs~l~-------~~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~ 118 (321)
T 2v5h_A 46 QFAGRTVVVKYGGAAMK-------QEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADT 118 (321)
T ss_dssp HTTTCEEEEEECTHHHH-------SHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHH
T ss_pred HhCCCeEEEEECchhhC-------CchHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHH
Confidence 36788999999999998 45688999999999999999999999999876543 33331 1121 123
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc----------cccc----hHHH-HHHHHHhhCCCEEEEeCC--
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG-- 152 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----------~~~~----~~~~-~~l~~ll~~g~iPIi~g~-- 152 (267)
.+.+++++ ..+|.. +..+|.++|+++..++..+.. ++.. ..++ +.+.++|++|+|||+++.
T Consensus 119 l~~~~~~~~G~in~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~ 197 (321)
T 2v5h_A 119 MEVVEMVLVGRVNKD-IVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAA 197 (321)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEE
T ss_pred HHHHHHHHhChHHHH-HHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceE
Confidence 45555443 345664 567899999998776544321 2211 0122 235579999999999963
Q ss_pred --CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHH
Q 024480 153 --TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITL 222 (267)
Q Consensus 153 --~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~ 222 (267)
.|..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.++ ++++| |++|+..
T Consensus 198 ~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~ 274 (321)
T 2v5h_A 198 DENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIR 274 (321)
T ss_dssp CTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHH
T ss_pred CCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHH
Confidence 33445 4999999999999999999999999999999997 5899999999988764 46789 7899999
Q ss_pred HHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecC
Q 024480 223 CQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~ 257 (267)
|.++|++ ++|+|++.|+.+ .++|+++..||+|.++
T Consensus 275 a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 275 SLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 9999998 999999999998 7899998899999864
No 21
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=100.00 E-value=1.9e-36 Score=266.25 Aligned_cols=219 Identities=22% Similarity=0.233 Sum_probs=168.9
Q ss_pred eEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCC------CeEEEEECCchHHhhh-HHhcCCCCCCC---hHHH
Q 024480 25 RVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLG------IEVAIVVGGGNIFRGA-SAAGNSGLDRS---SADY 93 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g------~~vViVhGgG~~~~~~-~~~~~~~l~~~---~~~~ 93 (267)
++|||+||++|++++ ++.++.+.+++++++|+++++.| .++|||||||++++.+ .+++ +.+. +.+.
T Consensus 8 ~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lg---i~~~~~~~~~~ 84 (266)
T 3k4o_A 8 LTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYL---KIEDGKKIFIN 84 (266)
T ss_dssp EEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGE---EECSSSEEECC
T ss_pred EEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcC---CCcccCccccc
Confidence 699999999999865 46899999999999999998878 9999999999998773 4443 4443 1121
Q ss_pred --HHHHH-----HHHHHHHHHHHHHHcCCCeeEeeccccccccc-hHHH-HHHHHHhhCCCEEEEeCC-----C-CCCCC
Q 024480 94 --IGMLA-----TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PYIR-RRAVRHLEKGRVVIFAAG-----T-GNPFF 158 (267)
Q Consensus 94 --~~~~~-----~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~-~~~~-~~l~~ll~~g~iPIi~g~-----~-g~~~~ 158 (267)
.++.. ..+|+. +.++|.++|+++.++++.+...... .+++ +.+.++|++|+|||++++ . +..++
T Consensus 85 ~~~G~r~T~~a~~~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~ 163 (266)
T 3k4o_A 85 MEKGFWEIQRAMRRFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRII 163 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHTTTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEE
T ss_pred ccCceeHHHHHHHHHHHH-HHHHHHHCCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeee
Confidence 22222 237776 5678999999999887765432210 1222 346689999999999984 1 24578
Q ss_pred CcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhh-----------cCCCcc--hHHHHHHHHh
Q 024480 159 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----------KDLSVM--DMTAITLCQE 225 (267)
Q Consensus 159 ~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~-----------lg~g~m--k~~aa~~a~~ 225 (267)
++|++|+++|.+|+||+|+|+||||||| .||+ ++++++..|+.+ .++|+| |++++..+.+
T Consensus 164 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~ 236 (266)
T 3k4o_A 164 SGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC 236 (266)
T ss_dssp CHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 7775 455555432221 246778 8999988776
Q ss_pred CCCcEEEEcCCCCCcHHHHhcCCCcceEEecC
Q 024480 226 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 226 ~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+++|+|++.|+.+.++|+|+.+||+|.+.
T Consensus 237 ---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 237 ---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp ---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred ---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 99999999999999999999999999874
No 22
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=6.9e-37 Score=271.83 Aligned_cols=229 Identities=16% Similarity=0.173 Sum_probs=166.1
Q ss_pred cceEEEEeccccccCCC-CCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECCchHHhhhHHhcCCCCCCChHHHHHHHH-H
Q 024480 23 WQRVLLKVSGEALAGDH-TQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA-T 99 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGgG~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 99 (267)
.+++||||||+++++++ ++.++.+.+.+++++|+.+++.|+ ++|||||||++++.+.. ..+++....+.....+ .
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~--~~~~~~~~~~~~~~vt~g 100 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIR--DHDSTHAFSLAGLTEATF 100 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCTTHHHHHHHH
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH--HcCCCcccchhcchhhHH
Confidence 45899999999999875 357899999999999999999898 79999999998766532 1233322211111111 2
Q ss_pred HHHHHHHHHHHHHcCCCeeEeeccccccc----cchHHHHHHHHHhhCCCEEEEeCCC-----CC-CCCCcHHHHHHHHH
Q 024480 100 VMNAIFLQATMESIGIPTRVQTAFRMSEV----AEPYIRRRAVRHLEKGRVVIFAAGT-----GN-PFFTTDTAAALRCA 169 (267)
Q Consensus 100 ~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~----~~~~~~~~l~~ll~~g~iPIi~g~~-----g~-~~~~sD~~Aa~lA~ 169 (267)
.++. .+.++|.++|+++..+.+.+.. + ......+.+.++|++|+|||++|+. +. +++++|++|+++|.
T Consensus 101 ~l~~-~l~~~l~~~G~~a~~l~~~~~~-~t~dg~~~~~~~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~ 178 (286)
T 3d40_A 101 EVKK-RWAEKLRGIGVDAFPLQLAAMC-TLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLP 178 (286)
T ss_dssp HHHH-HHHHHHHHTTCCEEECCGGGTE-EEETTEEEECCSHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTT
T ss_pred HHHH-HHHHHHHHcCCcEEEEEeecCC-cccCCeEEehHHHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHH
Confidence 2343 3567899999998766543321 1 0000012356899999999999841 22 46999999999999
Q ss_pred h-cCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----------CCCcc--hHHHHHHHHhCCCcEEEEcC
Q 024480 170 E-INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----------DLSVM--DMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 170 ~-l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----------g~g~m--k~~aa~~a~~~Gi~v~I~ng 235 (267)
+ |+||+|+|+|||||||++||+ ++++|++|++.|+.++ ++++| |++|+..+.++|++++|+|+
T Consensus 179 ~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g 255 (286)
T 3d40_A 179 MVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRG 255 (286)
T ss_dssp TCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeC
Confidence 9 999999999999999999998 7899999998753322 46888 78999999999999999999
Q ss_pred CCCCcHHHHhcC-----CCc-ceEEecCC
Q 024480 236 NQPGNIAKAIQG-----ERV-GTLIGGTW 258 (267)
Q Consensus 236 ~~~~~i~~~l~g-----~~~-GT~I~~~~ 258 (267)
++|+.+.++|.+ +++ ||.|....
T Consensus 256 ~~p~~l~~l~t~~~~~~~~~~~t~i~~~~ 284 (286)
T 3d40_A 256 DPGSDLEFLTAPFSSWPAHVRSTRITTTA 284 (286)
T ss_dssp CTTCCCGGGGSCGGGSCTTCCCEEEEC--
T ss_pred CCCCcHHHHhcCcccCcccccceeeeecc
Confidence 999999999999 776 99998643
No 23
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=4.7e-35 Score=283.26 Aligned_cols=219 Identities=22% Similarity=0.260 Sum_probs=176.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC--CCCCCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN--SGLDRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~--~~l~~~~~~~~~~~~ 98 (267)
|+++|+||||++++ +.+.+++++++|+++++.|+++|||||| |...+.+..+ .. ...+.+..+.+...+
T Consensus 1 m~~iViK~GGssl~-------~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~G 73 (600)
T 3l76_A 1 MALIVQKFGGTSVG-------TVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTG 73 (600)
T ss_dssp -CEEEEEECSGGGS-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CceEEEEeCCCCcC-------CHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHh
Confidence 57899999999998 5689999999999999999999999999 8776664432 11 111122334445567
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeeccccccccchH--------HH-HHHHHHhhCCCEEEEeCCC-----C------CCCC
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY--------IR-RRAVRHLEKGRVVIFAAGT-----G------NPFF 158 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~--------~~-~~l~~ll~~g~iPIi~g~~-----g------~~~~ 158 (267)
+.++..+++.+|+++|+++.++++++...+...+ ++ +.+.++|+.|.|||++||. | ..++
T Consensus 74 e~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrG 153 (600)
T 3l76_A 74 EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRG 153 (600)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCC
Confidence 7789999999999999999988876653221111 11 3356789999999998862 2 2356
Q ss_pred CcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcC
Q 024480 159 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNL 235 (267)
Q Consensus 159 ~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng 235 (267)
+||++|+++|.+|+||+|++||||||||++||+.+|++++|++++++|+.++ |.++|+++|+++|.++|+|++|.|+
T Consensus 154 gsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~ 233 (600)
T 3l76_A 154 GSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSS 233 (600)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEET
T ss_pred ChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEEC
Confidence 7999999999999999999999999999999999999999999999998875 8999999999999999999999999
Q ss_pred CCCCcHHHHhcCCCcceEEecCC
Q 024480 236 NQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 236 ~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
+++ ..||+|.+..
T Consensus 234 ~~~----------~~GT~I~~~~ 246 (600)
T 3l76_A 234 WSD----------EPGTKVVAPP 246 (600)
T ss_dssp TCC----------SCCEEEECCC
T ss_pred CCC----------CCCeEEecCC
Confidence 864 4799998654
No 24
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=1.1e-34 Score=270.66 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=168.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC-CchHHhhhHHh-cC--CCCCCChHHHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG-GGNIFRGASAA-GN--SGLDRSSADYIGMLA 98 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG-gG~~~~~~~~~-~~--~~l~~~~~~~~~~~~ 98 (267)
|+++|+||||++++ +.+.+++++++|+.+++.|+++||||| +|.+.+.+... +. ...+.+..+.+.+.+
T Consensus 1 m~~iViK~GGssl~-------~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~G 73 (421)
T 3ab4_A 1 MALVVQKYGGSSLE-------SAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAG 73 (421)
T ss_dssp -CEEEEEECSGGGS-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEChhHhC-------CHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Confidence 57899999999998 567999999999999999999999997 46665544322 11 112233455555677
Q ss_pred HHHHHHHHHHHHHHcCCCeeEeecccccccc-chH-------HH-HHHHHHhhCCCEEEEeCCC------CC----CCCC
Q 024480 99 TVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY-------IR-RRAVRHLEKGRVVIFAAGT------GN----PFFT 159 (267)
Q Consensus 99 ~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~-~~~-------~~-~~l~~ll~~g~iPIi~g~~------g~----~~~~ 159 (267)
+.++..++.++|+++|+++.++++.+...+. +++ ++ +.+.++|+.|.|||++|+. |. .+++
T Consensus 74 e~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~ 153 (421)
T 3ab4_A 74 ERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGG 153 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC------------------CC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCC
Confidence 7888888889999999999887765542111 111 11 3456789999999999872 22 2459
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCC
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLN 236 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~ 236 (267)
+|++|+++|.+|+||+|++||||||||++||+.+|++++|++|+++|+.++ |.+.||++|+.+|.++|+|++|.|++
T Consensus 154 sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~ 233 (421)
T 3ab4_A 154 SDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSY 233 (421)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCc
Confidence 999999999999999999999999999999999999999999999998875 78889999999999999999999998
Q ss_pred CCCcHHHHhcCCCcceEEecC
Q 024480 237 QPGNIAKAIQGERVGTLIGGT 257 (267)
Q Consensus 237 ~~~~i~~~l~g~~~GT~I~~~ 257 (267)
+| ..||+|.++
T Consensus 234 ~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 234 SN----------DPGTLIAGS 244 (421)
T ss_dssp SC----------CCCEEECSC
T ss_pred CC----------CCCeEEEec
Confidence 87 479999865
No 25
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=100.00 E-value=5.7e-35 Score=259.07 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=172.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---ChH
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SSA 91 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~~ 91 (267)
++++++||||||++++ +.+.+.+++++|+.+++.|+++|||||||++.+. +..++. .+++. .+.
T Consensus 19 ~~~~~iViKlGGs~l~-------~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l 91 (282)
T 2bty_A 19 FYGKTFVIKFGGSAMK-------QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTM 91 (282)
T ss_dssp HTTCEEEEEECSHHHH-------SHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHH
T ss_pred hcCCeEEEEECchhhC-------ChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHH
Confidence 5578999999999998 4568899999999999999999999999986644 333331 12221 234
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc-----------cccc----hHHH-HHHHHHhhCCCEEEEeCC--
Q 024480 92 DYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS-----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG-- 152 (267)
Q Consensus 92 ~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----------~~~~----~~~~-~~l~~ll~~g~iPIi~g~-- 152 (267)
+.++++. ..++.. ++++|.++|+++..+++.+.. ++.. .+++ +.+.++|++|.|||++++
T Consensus 92 ~~~~~~~~G~~~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~ 170 (282)
T 2bty_A 92 EIVEMVLVGKINKE-IVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGI 170 (282)
T ss_dssp HHHHHHHHHTHHHH-HHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEE
T ss_pred HHHHHHHhhHHHHH-HHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCcc
Confidence 4444443 234554 668999999998877654321 1111 1233 335689999999999984
Q ss_pred --CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHH
Q 024480 153 --TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITL 222 (267)
Q Consensus 153 --~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~ 222 (267)
.|..+ +|+|++|+++|.+|+||+|+|||||||||++ | ++|++++++|+.++ .+++| |++|+..
T Consensus 171 ~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~ 243 (282)
T 2bty_A 171 GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVS 243 (282)
T ss_dssp CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHH
T ss_pred CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 23344 5999999999999999999999999999996 2 89999999998764 35678 8999999
Q ss_pred HHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecC
Q 024480 223 CQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 257 (267)
Q Consensus 223 a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~ 257 (267)
+.++|++ ++|+|++.|+.+ .++|+++..||+|.++
T Consensus 244 a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 244 AVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 9999998 999999999998 7899998899999865
No 26
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=100.00 E-value=2.9e-34 Score=252.93 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=160.3
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcCC--------CC--CCChHHH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNS--------GL--DRSSADY 93 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~~--------~l--~~~~~~~ 93 (267)
++||||||++++ .+++++++|+.+++.|+++|||||||++.+. +..++.. |+ +....+.
T Consensus 1 ~iViKlGGs~l~----------~~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~~ 70 (269)
T 2egx_A 1 MIVVKVGGAEGI----------NYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKT 70 (269)
T ss_dssp CEEEEECCSTTC----------CHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHH
T ss_pred CEEEEECHHHHH----------HHHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHHH
Confidence 589999999986 4678999999999899999999999987643 3333311 11 2222333
Q ss_pred HHHHHH----HHHHHHHHHHHHHcCCCeeEeecccccccc------------------------c-hHHHH-HHHHHhhC
Q 024480 94 IGMLAT----VMNAIFLQATMESIGIPTRVQTAFRMSEVA------------------------E-PYIRR-RAVRHLEK 143 (267)
Q Consensus 94 ~~~~~~----~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~------------------------~-~~~~~-~l~~ll~~ 143 (267)
+.++.+ .++. .+.++|.++|+++..+++.+...+. + .+++. .+.++|++
T Consensus 71 l~~~~~~~~G~i~~-~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~ 149 (269)
T 2egx_A 71 LEIFEMVYCGLVNK-RLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQA 149 (269)
T ss_dssp HHHHHHHHHTHHHH-HHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHH-HHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHC
Confidence 333332 2343 4668899999999877765522110 0 12333 35578999
Q ss_pred CCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHh--hc---CCC
Q 024480 144 GRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT--SK---DLS 213 (267)
Q Consensus 144 g~iPIi~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~--~l---g~g 213 (267)
|.|||+++. .|. .++++|++|+++|.+|+||+|+|+|||||||+ || .|++++|++++++|+. ++ +++
T Consensus 150 g~ipVi~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp--~~~a~~i~~i~~~e~~~~~l~~~~~g 226 (269)
T 2egx_A 150 GYLPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY--PDEASLVREIPVERIEDPEYLALAQG 226 (269)
T ss_dssp TCEEEEECCEEETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCH
T ss_pred CCEEEEcCcEECCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC--CCCccccccCCHHHhhHHHhcCCCCC
Confidence 999999973 233 46899999999999999999999999999999 88 3789999999999988 64 677
Q ss_pred cc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 214 VM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 214 ~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+| |++|+..|.++|+ +++|+|+++|+.+.++|+| .||+|.
T Consensus 227 gm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i~ 269 (269)
T 2egx_A 227 RMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVVR 269 (269)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEEC
T ss_pred chHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEEC
Confidence 88 6799999999999 8999999999999999987 799984
No 27
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=100.00 E-value=8.3e-34 Score=253.67 Aligned_cols=225 Identities=17% Similarity=0.258 Sum_probs=172.8
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~ 90 (267)
.++++++|||+||+++++ .+.+..++++|+.+++.|+++|||||||++.+. +..++. .|++. .+
T Consensus 23 ~~~~k~iVIKlGGs~l~~-------~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~ 95 (300)
T 2buf_A 23 RFVGKTLVIKYGGNAMES-------EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAAT 95 (300)
T ss_dssp HHTTCEEEEEECCTTTTS-------SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHH
T ss_pred HhcCCeEEEEECchhhCC-------chHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHH
Confidence 356789999999999985 357889999999999999999999999987643 333331 12221 23
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHcCCCeeEeeccccc----------------------cccc----hHHHHH-HHHHhh
Q 024480 91 ADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMS----------------------EVAE----PYIRRR-AVRHLE 142 (267)
Q Consensus 91 ~~~~~~~~-~~~~~~l~~~~l~~~Gi~~~~~~~~~~~----------------------~~~~----~~~~~~-l~~ll~ 142 (267)
.+.+++++ ..++. .+++.|.++|+++..+++.+.. ++.. .+++.+ +.++|+
T Consensus 96 l~~~~~~~~G~~~~-~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~ 174 (300)
T 2buf_A 96 MDVVEMVLGGQVNK-DIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVK 174 (300)
T ss_dssp HHHHHHHHHHTHHH-HHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHH
Confidence 45555543 23444 4668899999998776654221 1110 123434 557899
Q ss_pred CCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CC
Q 024480 143 KGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DL 212 (267)
Q Consensus 143 ~g~iPIi~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~ 212 (267)
+|.|||+++. .|..+ +++|++|+++|.+|+||+|+|+|||||||++ ++++|+++++.|+.++ ++
T Consensus 175 ~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ 248 (300)
T 2buf_A 175 GDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIY 248 (300)
T ss_dssp TTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSC
T ss_pred CCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCC
Confidence 9999999963 33444 5999999999999999999999999999986 3789999999988765 46
Q ss_pred Ccc--hHHHHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCC
Q 024480 213 SVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 258 (267)
Q Consensus 213 g~m--k~~aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~ 258 (267)
++| |++|+..+.++|++ ++|+|++.|+.+ .++|+++..||+|.++.
T Consensus 249 ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 298 (300)
T 2buf_A 249 GGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp TTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeCC
Confidence 789 77999999999998 999999999998 68999988999998654
No 28
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=100.00 E-value=1.7e-33 Score=246.51 Aligned_cols=218 Identities=19% Similarity=0.190 Sum_probs=168.0
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECCchHHhhhHH-hcC-----CCCCCChHHHH-
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNIFRGASA-AGN-----SGLDRSSADYI- 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGgG~~~~~~~~-~~~-----~~l~~~~~~~~- 94 (267)
|+++||||||++++ +.+.+.+++++|+.+.+.|. ++|||||+|++.+.+.. ++. .+++....+.+
T Consensus 2 m~~~ViK~GGs~l~-------~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~ 74 (258)
T 1gs5_A 2 MNPLIIKLGGVLLD-------SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQID 74 (258)
T ss_dssp CCCEEEEECGGGGG-------CHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHH
T ss_pred CccEEEEEChhHhC-------ChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHH
Confidence 56899999999998 46789999999999877655 59999999987765432 221 23332333444
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeeEeeccccccc------------cch-HHH-HHHHHHhhCCCEEEEeCC----C
Q 024480 95 ---GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV------------AEP-YIR-RRAVRHLEKGRVVIFAAG----T 153 (267)
Q Consensus 95 ---~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~------------~~~-~~~-~~l~~ll~~g~iPIi~g~----~ 153 (267)
.++++.+|+.++ +.|.++|+++..+++.+...+ ++. .++ +.+.++|++|.|||++|+ .
T Consensus 75 ~~~~~l~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~ 153 (258)
T 1gs5_A 75 IITGALAGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDE 153 (258)
T ss_dssp HHHHHHHTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTT
T ss_pred HHHHHHhccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCC
Confidence 345667888777 478999999998876653211 100 112 346689999999999986 3
Q ss_pred CC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hHHHHHHHH-
Q 024480 154 GN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQ- 224 (267)
Q Consensus 154 g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~~aa~~a~- 224 (267)
|. .++++|++|+++|.+|+|| |+|||||||||++| +++|++++++|+.++ .+++| |+.++..++
T Consensus 154 g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~ 226 (258)
T 1gs5_A 154 GQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAAR 226 (258)
T ss_dssp SCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHH
T ss_pred CcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33 3689999999999999999 99999999999975 579999999998765 36778 667776654
Q ss_pred hCCCcEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 225 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 225 ~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
+.+++++|+|+++|+.+.++|+|+..||+|.
T Consensus 227 ~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 227 TLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred hCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 5688999999999999999999999999996
No 29
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=100.00 E-value=4.7e-33 Score=249.84 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=164.0
Q ss_pred cceEEEEeccccccCCCCCCCCH----HHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC---CCCCCChHHHH
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDP----KITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN---SGLDRSSADYI 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~----~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~---~~l~~~~~~~~ 94 (267)
++++|||+||++++++ ..+. +.+++++++|+.+++.|+++|||||||++.+.+ ..++. ...+..+.+.+
T Consensus 2 ~k~iVIKlGGs~l~~~---~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~ 78 (310)
T 2we5_A 2 GKKMVVALGGNAILSN---DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTC 78 (310)
T ss_dssp CCEEEEECCGGGGCCS---SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHH
T ss_pred CcEEEEEEChHHhcCC---CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHH
Confidence 4689999999999862 2343 789999999999999999999999999877653 23331 11233455555
Q ss_pred HHH-----HHHHHHHHHHHHHHHcCCCeeEee--------------------------cccc-----ccc------cchH
Q 024480 95 GML-----ATVMNAIFLQATMESIGIPTRVQT--------------------------AFRM-----SEV------AEPY 132 (267)
Q Consensus 95 ~~~-----~~~~~~~l~~~~l~~~Gi~~~~~~--------------------------~~~~-----~~~------~~~~ 132 (267)
.+. +..++.. +...|.+.|++....+ ..+. ..+ .+.|
T Consensus 79 ~a~~~G~l~~~i~~a-l~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~ 157 (310)
T 2we5_A 79 VAMTQGSIGYWLSNA-LNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGW 157 (310)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCE
T ss_pred HHHhhhHHHHHHHHH-HHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCcce
Confidence 432 2223322 4466888888641111 0010 001 0001
Q ss_pred ------------HHHH-HHHHhhCCCEEEEeCCCC-----------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 024480 133 ------------IRRR-AVRHLEKGRVVIFAAGTG-----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 188 (267)
Q Consensus 133 ------------~~~~-l~~ll~~g~iPIi~g~~g-----------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~ 188 (267)
++.+ +.++|++|+|||++|+.| ..++|+|++|+++|.+|+||+|+|+|||||||+
T Consensus 158 ~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~- 236 (310)
T 2we5_A 158 RKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI- 236 (310)
T ss_dssp EEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-
T ss_pred eeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-
Confidence 2333 557999999999995432 235899999999999999999999999999999
Q ss_pred CCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC--cEEEEcCCCCCcHHHHhcCCCcceEEe
Q 024480 189 NPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG 255 (267)
Q Consensus 189 dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi--~v~I~ng~~~~~i~~~l~g~~~GT~I~ 255 (267)
|| .+|++++|+++++.|+.++ ++|+| |++||..+.++|+ +++|++ ++.+.++|+|+..||+|.
T Consensus 237 dp-~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 237 NY-GKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp ST-TSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred CC-CCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 78 5889999999999988764 34778 8999999999999 799997 566888999988999996
No 30
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=7.6e-33 Score=249.04 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=166.6
Q ss_pred cceEEEEeccccccCCCC-CC--CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-CC-CCCChHHHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT-QN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-SG-LDRSSADYIGM 96 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~-~~--~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-~~-l~~~~~~~~~~ 96 (267)
++++|||+||++++++++ .+ ++.+.+.+++++|+.+++.|+++|||||||.+.+.+ ..++. .. -++.+.+.+++
T Consensus 4 ~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~~ 83 (316)
T 2e9y_A 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATA 83 (316)
T ss_dssp CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHHH
T ss_pred CCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHHH
Confidence 468999999999996542 22 233799999999999999999999999999877643 33331 11 12344565544
Q ss_pred H-----HHHHHHHHHHHHHHHcCCCe--------eEeeccccc---------cc------------------cc------
Q 024480 97 L-----ATVMNAIFLQATMESIGIPT--------RVQTAFRMS---------EV------------------AE------ 130 (267)
Q Consensus 97 ~-----~~~~~~~l~~~~l~~~Gi~~--------~~~~~~~~~---------~~------------------~~------ 130 (267)
. +..++. .+.+.|.++|+++ ..++..+.. .+ .+
T Consensus 84 ~~~G~i~~~l~~-~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r 162 (316)
T 2e9y_A 84 MTQAWIGLLLKH-SLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFR 162 (316)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEE
T ss_pred HHHhHHHHHHHH-HHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccce
Confidence 2 223444 4567888999985 223322210 00 00
Q ss_pred -----h----HHHHH-HHHHhhCCCEEEEeCCCC--------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccc
Q 024480 131 -----P----YIRRR-AVRHLEKGRVVIFAAGTG--------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVY 186 (267)
Q Consensus 131 -----~----~~~~~-l~~ll~~g~iPIi~g~~g--------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy 186 (267)
+ .++.+ +.++|++|+|||++|++| ..++|+|++|+++|.+|+||+|+|+|||||||
T Consensus 163 ~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy 242 (316)
T 2e9y_A 163 RVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVA 242 (316)
T ss_dssp EEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCE
T ss_pred ecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhh
Confidence 0 02333 557899999999985422 12359999999999999999999999999999
Q ss_pred cCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC-cEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 187 DDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 187 ~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi-~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+ ||+ +|++++|++++++|+.++ ++|+| |+++|..+.++|+ +++|+| ++.+.++|+| ..||+|.+
T Consensus 243 ~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 243 V-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp E-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred C-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 9 784 799999999999988764 35778 8999999999999 799987 5668899998 78999974
No 31
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=100.00 E-value=5e-32 Score=239.02 Aligned_cols=212 Identities=22% Similarity=0.285 Sum_probs=153.5
Q ss_pred CCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCch-HHhhhHHhcC-----CCCCC
Q 024480 15 GMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDR 88 (267)
Q Consensus 15 ~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~-~~~~~~~~~~-----~~l~~ 88 (267)
.++.+.|+ |++|||+||+++++. +.+++++|+.|++.|+++|||||||+ +...+.+++. .|++.
T Consensus 29 ~~~~~~m~-k~iVIKiGGs~l~~~---------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rv 98 (279)
T 3l86_A 29 QMGRGSMK-DIIVIKIGGVASQQL---------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRV 98 (279)
T ss_dssp ------CC-CEEEEEECTTGGGSC---------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEEC
T ss_pred ccccccCC-ceEEEEEChHHHHhH---------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCccc
Confidence 35566665 799999999999842 46799999999999999999999986 4445555542 11111
Q ss_pred Ch---HHHHHH-HHHHHHHHHHHHHHHHcCCCeeEeeccccc-----cccc-hH--------HH-HHHHHHhhCCCEEEE
Q 024480 89 SS---ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMS-----EVAE-PY--------IR-RRAVRHLEKGRVVIF 149 (267)
Q Consensus 89 ~~---~~~~~~-~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~~~~-~~--------~~-~~l~~ll~~g~iPIi 149 (267)
+. .+.+++ ++..+|.. +.++|.++|+++..+++.+.. ++.. .| ++ +.+.++|++|+|||+
T Consensus 99 td~~~l~~v~~~l~G~ln~~-i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi 177 (279)
T 3l86_A 99 TSKDDMVLVSHALLDLVGKN-LQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPIL 177 (279)
T ss_dssp BCHHHHHHHHHHHHHTTHHH-HHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEE
Confidence 11 222222 33345554 557999999999877655432 1110 11 23 335689999999999
Q ss_pred eCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc-----CCCcc--hH
Q 024480 150 AAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DM 217 (267)
Q Consensus 150 ~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l-----g~g~m--k~ 217 (267)
+|. .|..+ +|+|++|+++|.+|+||+|+|+|||||||+ ++++|++++++|+.++ ++|+| |+
T Consensus 178 ~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl 250 (279)
T 3l86_A 178 ASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKI 250 (279)
T ss_dssp ESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHH
T ss_pred CCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHH
Confidence 983 23334 699999999999999999999999999995 3689999999887654 46888 89
Q ss_pred HHHHHHHhCCCc-EEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 218 TAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 218 ~aa~~a~~~Gi~-v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
+||..|.++|++ ++|+|++.+ ||+|..
T Consensus 251 ~aa~~a~~~Gv~~v~I~~~~~~------------GT~i~~ 278 (279)
T 3l86_A 251 ESAAKTVAAGVGQVLIGDNLLT------------GTLITA 278 (279)
T ss_dssp HHHHHHHHTTCSEEEEESSSSC------------SEEEEC
T ss_pred HHHHHHHHcCCCEEEEeccCCC------------CeEEec
Confidence 999999999998 999998742 899964
No 32
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=100.00 E-value=3.7e-32 Score=244.34 Aligned_cols=227 Identities=19% Similarity=0.267 Sum_probs=161.8
Q ss_pred cceEEEEeccccccCCCC---CCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC---C-CCCCChHHHH
Q 024480 23 WQRVLLKVSGEALAGDHT---QNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN---S-GLDRSSADYI 94 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~---~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~---~-~l~~~~~~~~ 94 (267)
++++|||+||++++++++ ..++.+.+++++++|+.+++.|+++|||||||++... +...+. . ..+..+.+..
T Consensus 2 ~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (314)
T 1e19_A 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 81 (314)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred CCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHHH
Confidence 478999999999996542 1245679999999999999999999999999875432 222210 0 1234455554
Q ss_pred HHH-----HHHHHHHHHHHHHHHcCCCe--------eEeecccc---------cc-------------c-----cc---h
Q 024480 95 GML-----ATVMNAIFLQATMESIGIPT--------RVQTAFRM---------SE-------------V-----AE---P 131 (267)
Q Consensus 95 ~~~-----~~~~~~~l~~~~l~~~Gi~~--------~~~~~~~~---------~~-------------~-----~~---~ 131 (267)
.+. +..++. ++.+.|.++|+++ ..++..+. +. . .+ .
T Consensus 82 ~a~~~G~i~~~l~~-~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~ 160 (314)
T 1e19_A 82 GAMSQGWIGYMIQQ-ALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 160 (314)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccccccc
Confidence 332 223433 3567889999985 22222220 00 0 00 0
Q ss_pred H------------HHHH-HHHHhhCCCEEEEeCCCC-------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IRRR-AVRHLEKGRVVIFAAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~~~-l~~ll~~g~iPIi~g~~g-------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
| ++.+ +.++|++|+|||++|+.| ..++|+|++|+++|.+|+||+|+|+||||||
T Consensus 161 ~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGv 240 (314)
T 1e19_A 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 (314)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 0 1233 568999999988874311 1358999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHH-HHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~-a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|++|| +|++++|++++++|+.++ ++|+| |+++|.. +.+.+++++|+|+ +.+.++|+| +.||+|.+
T Consensus 241 y~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 241 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred ECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 99998 588999999999988764 35788 7788866 5556778999984 568899988 48999964
No 33
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=1.3e-31 Score=254.17 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=171.3
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHh-cC----------------
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAA-GN---------------- 83 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~-~~---------------- 83 (267)
+++++|.||||+++. +.+.++++++.|.+. .++++|+|+|+ |.+.+.+..+ ..
T Consensus 25 ~~~~~V~KFGGTSva-------~~e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~ 95 (510)
T 2cdq_A 25 KGITCVMKFGGSSVA-------SAERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELS 95 (510)
T ss_dssp CCCCEEEEECTGGGS-------SHHHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHH
T ss_pred CCCeEEEEECCcccC-------CHHHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHH
Confidence 356799999999998 678999999988643 34678888888 5333322111 00
Q ss_pred -------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccc
Q 024480 84 -------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 126 (267)
Q Consensus 84 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~ 126 (267)
...+++..|.+.++++.+++.++..+|+++|+++.++++.+.+
T Consensus 96 ~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~ 175 (510)
T 2cdq_A 96 IIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 175 (510)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHee
Confidence 1112234566677889999999999999999999988887652
Q ss_pred cc-----cc------hH--HHHHHHH-HhhCCCEEEEeCCCC----C------CCCCcHHHHHHHHHhcCCcEEEEeecc
Q 024480 127 EV-----AE------PY--IRRRAVR-HLEKGRVVIFAAGTG----N------PFFTTDTAAALRCAEINAEVVLKATNV 182 (267)
Q Consensus 127 ~~-----~~------~~--~~~~l~~-ll~~g~iPIi~g~~g----~------~~~~sD~~Aa~lA~~l~Ad~Li~lTDV 182 (267)
.+ .. .+ ..+.+.+ +++.|.|||++||.| + .+++||++|+++|.+|+|++|++||||
T Consensus 176 l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDV 255 (510)
T 2cdq_A 176 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDV 255 (510)
T ss_dssp CEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred EEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCC
Confidence 11 11 11 2234454 678999999998632 1 356799999999999999999999999
Q ss_pred CccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 183 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 183 dGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
||||++||+.+|++++|++|+|+|+.++ |.++||++|+.+|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 256 dGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~ 325 (510)
T 2cdq_A 256 DGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPK---------APGTIITKTR 325 (510)
T ss_dssp SSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred CCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCC---------CCCeEEeccc
Confidence 9999999999999999999999998876 88999999999999999999999999986 6799998753
No 34
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.98 E-value=1.6e-31 Score=252.50 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=172.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECC-chHHhhhHHh----c---C------------
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGG-GNIFRGASAA----G---N------------ 83 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGg-G~~~~~~~~~----~---~------------ 83 (267)
++|.||||+++. +.+.++++++.|.+. ++++ ++|+|.|+ |.+.+.+..+ . .
T Consensus 2 ~~V~KFGGtSv~-------~~~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~ 73 (473)
T 3c1m_A 2 TTVMKFGGTSVG-------SGERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIR 73 (473)
T ss_dssp CEEEEECTTTTS-------SHHHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CEEEEeCCcccC-------CHHHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 689999999998 678999999999776 6788 88989888 5332221110 0 0
Q ss_pred -----------------------------------------CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeec
Q 024480 84 -----------------------------------------SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 122 (267)
Q Consensus 84 -----------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~ 122 (267)
..++++..|.+.++++.+|+.++..+|+++|+++.++++
T Consensus 74 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~ 153 (473)
T 3c1m_A 74 EKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEG 153 (473)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 011222356677788999999999999999999998887
Q ss_pred ccccccc-------ch--HHH-HHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 024480 123 FRMSEVA-------EP--YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVD 183 (267)
Q Consensus 123 ~~~~~~~-------~~--~~~-~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVd 183 (267)
.+.+.+. +. ..+ +.+..+|+.|+|||++||.| ..++++|++|+++|.+|+||+|++|||||
T Consensus 154 ~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 154 GEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp HHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred hheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 6652111 11 122 34557889999999998622 24579999999999999999999999999
Q ss_pred ccccCCCCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 184 GVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 184 GVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
|||++||+.+|++++|+++++.|+.++ |.++|+++|+.+|.++|++++|.|+++|+ ..||+|.+..
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~---------~~GT~i~~~~ 302 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPE---------SEGTLITNDM 302 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCC---------CceEEEeccc
Confidence 999999999999999999999998774 88899999999999999999999999986 6799998754
No 35
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.98 E-value=2.1e-31 Score=250.79 Aligned_cols=223 Identities=19% Similarity=0.237 Sum_probs=163.9
Q ss_pred CCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhh-hHHhcC-----CCCCC---Ch
Q 024480 20 SYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SS 90 (267)
Q Consensus 20 ~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~-~~~~~~-----~~l~~---~~ 90 (267)
.++++++|||+||++++++ + +..++++|+.+++.|+++|||||||++.+. +..++. .|++. .+
T Consensus 40 ~~~~~~iViK~GG~~l~~~-------~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~ 111 (456)
T 3d2m_A 40 QMRGTTLVAGIDGRLLEGG-------T-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETS 111 (456)
T ss_dssp HHTTCEEEEEECGGGGTST-------H-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHH
T ss_pred HhcCCEEEEEEChHHhcCc-------h-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHH
Confidence 3668899999999999853 2 789999999999999999999999987543 333321 11221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCe----eEeeccccc-------------ccc---c-hHHH-HHHHHHhhCCCEEE
Q 024480 91 ADYIGMLATVMNAIFLQATMESIGIPT----RVQTAFRMS-------------EVA---E-PYIR-RRAVRHLEKGRVVI 148 (267)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~l~~~Gi~~----~~~~~~~~~-------------~~~---~-~~~~-~~l~~ll~~g~iPI 148 (267)
.+.+++.+..++..+ .+.|. +|+++ +.+++.+.. |+. + .+++ +.+.++|++|.|||
T Consensus 112 l~~~~~~~G~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 112 LGQAQQFAGTVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhHHHHHH-HHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 344444344556544 56787 88877 323222210 111 0 1233 33568999999999
Q ss_pred EeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc---CCCcc--hHH
Q 024480 149 FAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMT 218 (267)
Q Consensus 149 i~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l---g~g~m--k~~ 218 (267)
++++ .|. .++|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|++.|+.++ |.|+| |++
T Consensus 190 i~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~ 263 (456)
T 3d2m_A 190 MPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLIS 263 (456)
T ss_dssp ECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHH
T ss_pred ECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHH
Confidence 9974 233 458999999999999999999999999999985 4789999999988765 45778 889
Q ss_pred HHHHHHhCCCc-EEEEcCCCCCcH-HHHhcCCCcceEEecCC
Q 024480 219 AITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTW 258 (267)
Q Consensus 219 aa~~a~~~Gi~-v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~ 258 (267)
||..|.++|++ ++|+|++.|+.+ .++++++..||+|.++.
T Consensus 264 aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~ 305 (456)
T 3d2m_A 264 SAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA 305 (456)
T ss_dssp HHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred HHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence 99999999996 999999999998 57788888999998654
No 36
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.97 E-value=5.7e-31 Score=246.79 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=164.9
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-chHHhhhHHhcC------------------
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGN------------------ 83 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~~~~~~~~~~~------------------ 83 (267)
|+++|.||||+++. +.+.++++++.|.+ ...++|+|+|+ |.+.+.+..+..
T Consensus 2 m~~~V~KFGGTSv~-------~~e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~ 71 (449)
T 2j0w_A 2 SEIVVSKFGGTSVA-------DFDAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQ 71 (449)
T ss_dssp -CCEEEEECSGGGS-------SHHHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCC-------CHHHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 67899999999998 67888898888854 33588888888 544333222110
Q ss_pred ----CCC--------------------------C--CChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecccc----cc
Q 024480 84 ----SGL--------------------------D--RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----SE 127 (267)
Q Consensus 84 ----~~l--------------------------~--~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~----~~ 127 (267)
..+ . ++..|.+.+.++.++..++..+|+++|+++.++++.+. .+
T Consensus 72 ~~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~ 151 (449)
T 2j0w_A 72 FAILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDR 151 (449)
T ss_dssp HHHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCC
Confidence 001 1 23346666788899999999999999999998887665 11
Q ss_pred cc--chH---HH---HHHH-HHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 024480 128 VA--EPY---IR---RRAV-RHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 189 (267)
Q Consensus 128 ~~--~~~---~~---~~l~-~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~d 189 (267)
+. +.+ .. .+++ .++ .+.|||++||.+ ..+++||++|+++|.+|+||+|++||||||||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~l~-~~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~D 230 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLLPRL-NEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTHHHH-HHSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred CCCccccHhHhHHHHHHHHHHHh-cCCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCC
Confidence 11 111 11 1222 344 445999998632 23567999999999999999999999999999999
Q ss_pred CCCCCCcccccccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 190 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 190 P~~~~~a~li~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
|+.+|++++|++++++|+.++ |.+.||++|+.+|.++|++++|.|+++|+ ..||+|.+..
T Consensus 231 Pr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~~~~ 293 (449)
T 2j0w_A 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNKT 293 (449)
T ss_dssp TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred CCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence 999999999999999998876 77888889999999999999999999986 6799998753
No 37
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.97 E-value=2.1e-30 Score=242.24 Aligned_cols=211 Identities=20% Similarity=0.254 Sum_probs=159.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ch-------HHhhhHHh-cC--CC-------
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG-GN-------IFRGASAA-GN--SG------- 85 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg-G~-------~~~~~~~~-~~--~~------- 85 (267)
+|.|.|||||++. +.+.++++++.|.+ .+.++|+|.|+ |. ..+.+..+ .. .+
T Consensus 3 ~m~V~KFGGtSva-------~~e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~ 72 (446)
T 3tvi_A 3 KIVVTKFGGSSLA-------DSNQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVF 72 (446)
T ss_dssp -CEEEEECGGGGS-------SHHHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ccEEEEeCccccC-------CHHHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHH
Confidence 5799999999998 67889999988875 46788888888 62 32222111 00 00
Q ss_pred ---------------CC----------------CChHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeccccccccc----
Q 024480 86 ---------------LD----------------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---- 130 (267)
Q Consensus 86 ---------------l~----------------~~~~~~~~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~---- 130 (267)
++ .+..|++...++++++.+++.+|.+ .++++++......
T Consensus 73 ~~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a-----~~~~~~~~~~~~~~~~~ 147 (446)
T 3tvi_A 73 KLISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNA-----EFIDAAEVIFFDKSGCF 147 (446)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTC-----EECCGGGTCBBCC--CB
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcc-----eeECHHHheeeCCCCce
Confidence 10 0345667778999999999888753 3444443322211
Q ss_pred --hHHHHHHHHHhhCCCEEEEeCCCC---------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccc
Q 024480 131 --PYIRRRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 199 (267)
Q Consensus 131 --~~~~~~l~~ll~~g~iPIi~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li 199 (267)
....+.+.++|+.|.|||++||.| ..+++||++|+++|.+|+|++|++||||||||++||+.+|++++|
T Consensus 148 ~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i 227 (446)
T 3tvi_A 148 DEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227 (446)
T ss_dssp CHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBC
T ss_pred ehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEc
Confidence 112244668899999999999732 245789999999999999999999999999999999999999999
Q ss_pred cccCHHHHhhc---CCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhcCCCcceEEecCC
Q 024480 200 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 258 (267)
Q Consensus 200 ~~Is~~e~~~l---g~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~g~~~GT~I~~~~ 258 (267)
++++|+|+.++ |.++||++|+++|.++|||++|.|+++|+ ..||+|.+..
T Consensus 228 ~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~~ 280 (446)
T 3tvi_A 228 SKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSDT 280 (446)
T ss_dssp SEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECTT
T ss_pred ceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecCC
Confidence 99999999886 78899999999999999999999999886 6799998754
No 38
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.97 E-value=8.3e-30 Score=229.36 Aligned_cols=229 Identities=19% Similarity=0.258 Sum_probs=154.8
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHH----hhhHHhcC--CCCCCChHH
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAGN--SGLDRSSAD 92 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~----~~~~~~~~--~~l~~~~~~ 92 (267)
...+||++|||+||++|++... ...+.++.++++|+.|.+.|+++|||||||++. ..+..++. .+.+..+.+
T Consensus 20 d~K~MkRIVIklGGnAL~~~~~--~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~ 97 (332)
T 4axs_A 20 DDKHMSRIVIALGGNALGDNPS--QQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFA 97 (332)
T ss_dssp ------CEEEEECGGGGCSSHH--HHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHH
T ss_pred cccCcceEEEEEChhhcCCChH--HHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhH
Confidence 4567889999999999975311 124677889999999999999999999998742 23333321 223333444
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHcCCCeeEee-----cccccc--------------------------------ccc
Q 024480 93 YIGM-----LATVMNAIFLQATMESIGIPTRVQT-----AFRMSE--------------------------------VAE 130 (267)
Q Consensus 93 ~~~~-----~~~~~~~~l~~~~l~~~Gi~~~~~~-----~~~~~~--------------------------------~~~ 130 (267)
...+ .+..++.. +.+.|..+|+.....+ .++..| ..+
T Consensus 98 ~~~a~tqg~ig~~l~~~-l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~ 176 (332)
T 4axs_A 98 EAGGMSQGYIGYHMLTA-ISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGR 176 (332)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC-----
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCC
Confidence 4332 22233333 3466777887532221 111111 000
Q ss_pred hH------------HHHH-HHHHhhCCCEEEEeCCC------------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 024480 131 PY------------IRRR-AVRHLEKGRVVIFAAGT------------G-NPFFTTDTAAALRCAEINAEVVLKATNVDG 184 (267)
Q Consensus 131 ~~------------~~~~-l~~ll~~g~iPIi~g~~------------g-~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdG 184 (267)
.| ++.. +..++++|+|||..|.. | ..++|+|.+|+.+|.+++||+|+|+|||||
T Consensus 177 g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~g 256 (332)
T 4axs_A 177 GFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDY 256 (332)
T ss_dssp ---CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSS
T ss_pred CceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCc
Confidence 00 2233 45788999998865421 1 246999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCCC--cEEEEcCCCCCcHHHHhcCCCcceEE
Q 024480 185 VYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLI 254 (267)
Q Consensus 185 Vy~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~Gi--~v~I~ng~~~~~i~~~l~g~~~GT~I 254 (267)
||+++|+ |++++|++++.+|+.++ ++|+| |++||..+.+.|. .++|.+ ++.+.++++|+ .||+|
T Consensus 257 v~~~~~~--~~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~I 330 (332)
T 4axs_A 257 VYVDFNK--PTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKI 330 (332)
T ss_dssp CEESTTS--TTCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEE
T ss_pred eEcCCCC--cchhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEE
Confidence 9998874 77899999999988754 46788 9999999988876 466654 56788999997 79999
Q ss_pred ec
Q 024480 255 GG 256 (267)
Q Consensus 255 ~~ 256 (267)
..
T Consensus 331 vA 332 (332)
T 4axs_A 331 IA 332 (332)
T ss_dssp BC
T ss_pred eC
Confidence 63
No 39
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.97 E-value=1.2e-29 Score=226.34 Aligned_cols=218 Identities=15% Similarity=0.206 Sum_probs=160.6
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCC---hHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRS---SADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~---~~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++.+ +.+.+
T Consensus 49 ~~iViK~GGsv~~~---------~~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~vv 119 (307)
T 3zzh_A 49 QFAVIKVGGAIISD---------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVV 119 (307)
T ss_dssp CCEEEEECHHHHHH---------SHHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHH
T ss_pred CEEEEEEChHHhhc---------hHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHHHH
Confidence 78999999998863 26899999999999999999999999987654 33331 222222 23445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeecc--ccc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAF--RMS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~--~~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.+....+|..++ ++|.+.|+++.++++- ... ++. + ..++ +.+..+|++|+|||++|+ .|. .+
T Consensus 120 ~m~~~~vn~~lv-~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~ 198 (307)
T 3zzh_A 120 RKCFLEQNLKLV-TALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLN 198 (307)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEB
T ss_pred HHHHHHHHHHHH-HHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEe
Confidence 454446787765 7899999999987641 111 110 0 0122 346689999999999985 232 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH-Hhhc-----CCCcc--hHHHHHHHHh---C
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQE---N 226 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e-~~~l-----g~g~m--k~~aa~~a~~---~ 226 (267)
+++|++|+++|.+|+||+|+|+|||||||++ |++++|+++++.| +.++ .+|+| |+++++.|.+ .
T Consensus 199 i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~ 273 (307)
T 3zzh_A 199 VNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPR 273 (307)
T ss_dssp CCHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCT
T ss_pred cCHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999985 4689999999975 4332 46788 7776555544 4
Q ss_pred CCcEEEEcCCCCCcH-HHHhcCCCcceEEecCCC
Q 024480 227 NIPVVVFNLNQPGNI-AKAIQGERVGTLIGGTWN 259 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i-~~~l~g~~~GT~I~~~~~ 259 (267)
|.+++|++ ++.+ .+++.+++.||+|.+..+
T Consensus 274 g~~v~I~~---~~~ll~elft~~g~GT~I~~~~~ 304 (307)
T 3zzh_A 274 SSSVAIIN---VQDLQKELFTDSGAGTMIRRGYK 304 (307)
T ss_dssp TCCEEEEC---GGGHHHHHHSCCCCSEEEECCC-
T ss_pred CeEEEEeC---ccHHHHHHhcCCCCcEEEecCCc
Confidence 88899998 7776 468889999999987543
No 40
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.96 E-value=5.5e-29 Score=220.98 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=160.2
Q ss_pred cceEEEEeccccccCCC-CCC--CCHHHHHHHHHHHHHHHHCCCeEEEEECCchHH----hhhHHhcCCCCCCChHHHHH
Q 024480 23 WQRVLLKVSGEALAGDH-TQN--IDPKITMAIAREVASVTRLGIEVAIVVGGGNIF----RGASAAGNSGLDRSSADYIG 95 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~-~~~--~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~----~~~~~~~~~~l~~~~~~~~~ 95 (267)
.|++||++||++|...+ +.+ ...+.++..+++|+.+.++|+++||+||+|++. .+...+. ...+..+.|.+.
T Consensus 5 ~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~-~~~~~~pld~~~ 83 (317)
T 3kzf_A 5 GKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA-GVSPEMPLHVCG 83 (317)
T ss_dssp CCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT-SSSCCCCHHHHH
T ss_pred CCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc-ccCCCCCccccC
Confidence 36899999999996422 112 245678899999999999999999999998643 2222121 123445666654
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCCeeEeeccccc-----c---------------------cc-ch------------
Q 024480 96 -----MLATVMNAIFLQATMESIGIPTRVQTAFRMS-----E---------------------VA-EP------------ 131 (267)
Q Consensus 96 -----~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~~-----~---------------------~~-~~------------ 131 (267)
+++..++.. +.+.|..+|++....+..+.- | +. ++
T Consensus 84 A~sqG~igy~l~~a-l~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg 162 (317)
T 3kzf_A 84 AMSQGFIGYMMSQA-MDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRG 162 (317)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------------C
T ss_pred chhhHHHHHHHHHH-HHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCC
Confidence 344445332 457788889875544443321 0 00 00
Q ss_pred H------------HH-HHHHHHhhCCCEEEEeCCCC-------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 024480 132 Y------------IR-RRAVRHLEKGRVVIFAAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDGV 185 (267)
Q Consensus 132 ~------------~~-~~l~~ll~~g~iPIi~g~~g-------------~~~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGV 185 (267)
| ++ +.+..+|++|+|||++|+.| ..++|+|++|+.+|.+|+||+|+|+||||||
T Consensus 163 ~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGV 242 (317)
T 3kzf_A 163 WRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNA 242 (317)
T ss_dssp CCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSC
T ss_pred eeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCee
Confidence 0 12 23557899999966653221 2368899999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCHHHHhhc------CCCcc--hHHHHHHHHhCC-CcEEEEcCCCCCcHHHHhcCCCcceEEec
Q 024480 186 YDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 256 (267)
Q Consensus 186 y~~dP~~~~~a~li~~Is~~e~~~l------g~g~m--k~~aa~~a~~~G-i~v~I~ng~~~~~i~~~l~g~~~GT~I~~ 256 (267)
|+ ||+ +|++++|++++++|+.++ ++|+| |++||..+.+.| .+++|+|+ +.+.++|+|+ .||+|.+
T Consensus 243 y~-dp~-~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 243 CI-NYK-KPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIK 316 (317)
T ss_dssp EE-SSS-CSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEEC
T ss_pred eC-CCC-CCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEec
Confidence 99 898 689999999999987754 35788 899999887654 57999995 5677999998 7999986
Q ss_pred C
Q 024480 257 T 257 (267)
Q Consensus 257 ~ 257 (267)
+
T Consensus 317 d 317 (317)
T 3kzf_A 317 D 317 (317)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.96 E-value=2.1e-28 Score=228.79 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=160.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCCh---HHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~~---~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.++..|.++|||||||++.+.+ .+++. .|++.+. .+.+
T Consensus 49 ~~iVIK~GGsv~~~---------~l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~vv 119 (464)
T 4ab7_A 49 QFAVIKVGGAIISD---------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVV 119 (464)
T ss_dssp CCEEEEECHHHHHH---------CHHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHHHH
T ss_pred ceEEEEECHHHhhc---------hHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHHHH
Confidence 78999999998874 25789999999999999999999999987664 33332 2333222 3445
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeeccc--cc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFR--MS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~--~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.++...+|..++ ++|.++|++++++++-- .. +++ + ..++ +.+..+|++|+|||++|+ .|. .+
T Consensus 120 ~mv~~~vn~~lv-~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~n 198 (464)
T 4ab7_A 120 RKCFLEQNLKLV-TALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLN 198 (464)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEEE
T ss_pred HHHHHHHHHHHH-HHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEEE
Confidence 554446787654 78999999999876411 11 111 0 0123 346689999999999984 233 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHH-Hhhc-----CCCcc--hHHHHHHHHhC---
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQEN--- 226 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e-~~~l-----g~g~m--k~~aa~~a~~~--- 226 (267)
+++|++|+.+|.+|+|++|+|+|||||||++ |++++|+++++.| +.++ ++++| |+++++.|.+.
T Consensus 199 i~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~ 273 (464)
T 4ab7_A 199 VNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPR 273 (464)
T ss_dssp CCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCT
T ss_pred ecHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999986 4689999999975 3332 46678 77777666654
Q ss_pred CCcEEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 227 NIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 227 Gi~v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
|.+++|++ ++.+. +++.++++||+|.+.
T Consensus 274 g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 274 SSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp TCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred CcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 77899998 55554 678889999999876
No 42
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.96 E-value=1.1e-28 Score=231.09 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=165.3
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCC---ChHHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR---SSADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~---~~~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++. ...+.+
T Consensus 59 ~~iViK~GGsv~~~---------~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv 129 (460)
T 3s6g_A 59 RFAVIKVGGAVIQD---------DLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMPII 129 (460)
T ss_dssp GSEEEEECHHHHHH---------CHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHHHH
T ss_pred CEEEEEEChHHhhh---------HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHH
Confidence 89999999997763 36899999999999999999999999977654 33332 23322 234544
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeeccc--cc-----ccc---c-hHHH-HHHHHHhhCCCEEEEeCC----CCC-CC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFR--MS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~--~~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g~----~g~-~~ 157 (267)
.+....+|..++ ++|.+.|+++.++++.. .. +++ + ..++ +.+..+|++|.|||++++ .|. .+
T Consensus 130 ~~~lg~vn~~lv-~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~ 208 (460)
T 3s6g_A 130 RDTLTQANLALV-DAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVN 208 (460)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEE
T ss_pred HHHHHHHHHHHH-HHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEe
Confidence 443346787766 58999999999876521 11 110 0 0122 346689999999999964 233 35
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc-----CCCcc--hHHHHHHHHhCCCc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIP 229 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l-----g~g~m--k~~aa~~a~~~Gi~ 229 (267)
+++|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+.. |+.++ ++|+| |++++..+.+.+.+
T Consensus 209 i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~ 282 (460)
T 3s6g_A 209 INADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPL 282 (460)
T ss_dssp ECHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCT
T ss_pred cCHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCc
Confidence 8999999999999999999999999999984 47899999985 55543 46788 89999888874446
Q ss_pred EEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 230 VVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 230 v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
++|++++.|+.+. +++.++++||+|.+.
T Consensus 283 v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 283 SSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp TCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred EEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 9999999999987 678888999999876
No 43
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.5e-28 Score=227.84 Aligned_cols=218 Identities=18% Similarity=0.233 Sum_probs=162.2
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchHHhhh-HHhcC-----CCCCCCh---HHHH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYI 94 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~~~~~-~~~~~-----~~l~~~~---~~~~ 94 (267)
+++|||+||+++++ .+++++++|+.+++.|.++|||||||++.+.+ .+++. .|++.+. .+.+
T Consensus 62 ~~iViK~GG~v~~~---------~l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv 132 (467)
T 3s6k_A 62 RFAVVKVGGAVLRD---------DLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIV 132 (467)
T ss_dssp TSCCCCCCHHHHTT---------CCHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHHHH
T ss_pred cEEEEEEChHHhhh---------HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHH
Confidence 79999999997663 24789999999999999999999999977654 23331 2333222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEeecccc--c-----ccc---c-hHHH-HHHHHHhhCCCEEEEeC--C--CC-CCC
Q 024480 95 GMLATVMNAIFLQATMESIGIPTRVQTAFRM--S-----EVA---E-PYIR-RRAVRHLEKGRVVIFAA--G--TG-NPF 157 (267)
Q Consensus 95 ~~~~~~~~~~l~~~~l~~~Gi~~~~~~~~~~--~-----~~~---~-~~~~-~~l~~ll~~g~iPIi~g--~--~g-~~~ 157 (267)
.+....+|..++ ++|.++|++++++++... . +.. + ..++ +.+..+|++|.|||+++ + .| ..+
T Consensus 133 ~~~~g~vn~~Lv-~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~ 211 (467)
T 3s6k_A 133 RKVFQASNLKLV-EALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILN 211 (467)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCB
T ss_pred HHHHHHHHHHHH-HHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEe
Confidence 443346787766 588999999887665211 1 111 0 0123 34567999999999995 3 23 346
Q ss_pred CCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHH-HHhhc-----CCCcc--hHHHHHHHHhCCCc
Q 024480 158 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIP 229 (267)
Q Consensus 158 ~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~-e~~~l-----g~g~m--k~~aa~~a~~~Gi~ 229 (267)
+++|++|+.+|.+|+||+|+|+|||||||++ ++++|++++.. |+.++ ++|+| |++++..+.+.+.+
T Consensus 212 i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~ 285 (467)
T 3s6k_A 212 VNADFAANELVQELQPYKIIFLTGTGGLLDA------EGKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPL 285 (467)
T ss_dssp CCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS------SCCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCS
T ss_pred cCHHHHHHHHHHhcCCCEEEEEecccceeCC------CCCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCc
Confidence 8999999999999999999999999999985 36889999875 44432 47788 89999888875446
Q ss_pred EEEEcCCCCCcHH-HHhcCCCcceEEecC
Q 024480 230 VVVFNLNQPGNIA-KAIQGERVGTLIGGT 257 (267)
Q Consensus 230 v~I~ng~~~~~i~-~~l~g~~~GT~I~~~ 257 (267)
+++++++.|+.+. +++.++++||+|.+.
T Consensus 286 ~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 286 ESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp SCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred EEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 9999999999987 577888899999876
No 44
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=55.03 E-value=20 Score=27.94 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=32.9
Q ss_pred EEeeccCccccCCCCC-CCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~-~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.+++|+||++++.-.. .++...+..++.. +..+...+.+.|+++.|++++ ......+.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~----------D~~~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~ 69 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVK----------DAIGISLLKKSGIEVRLISER--ACSKQTLS 69 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHH----------HHHHHHHHHHTTCEEEEECSS--CCCHHHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecC----------cHHHHHHHHHCCCEEEEEeCc--HHHHHHHH
Confidence 4789999999853211 1222223333222 234566677788887777776 34444454
No 45
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=52.38 E-value=34 Score=24.25 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=30.6
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+|.++.-+.|.. .+ .......+.+.+..|++.|+++++++++
T Consensus 2 ~k~i~~D~DgtL-~~------~~~~~~~~~~~l~~L~~~G~~~~i~S~~ 43 (137)
T 2pr7_A 2 MRGLIVDYAGVL-DG------TDEDQRRWRNLLAAAKKNGVGTVILSND 43 (137)
T ss_dssp CCEEEECSTTTT-SS------CHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CcEEEEecccee-cC------CCccCccHHHHHHHHHHCCCEEEEEeCC
Confidence 356777788865 32 3445566777788898999999999865
No 46
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=52.04 E-value=5.3 Score=30.72 Aligned_cols=48 Identities=4% Similarity=-0.054 Sum_probs=31.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|.++.+++=+-|+++.+..+ .+.. ......+.|.++.++|+++++++|
T Consensus 1 m~~k~i~~DlDGTL~~~~~~-~i~~-~~~~~~~al~~l~~~G~~iii~Tg 48 (142)
T 2obb_A 1 SNAMTIAVDFDGTIVEHRYP-RIGE-EIPFAVETLKLLQQEKHRLILWSV 48 (142)
T ss_dssp -CCCEEEECCBTTTBCSCTT-SCCC-BCTTHHHHHHHHHHTTCEEEECCS
T ss_pred CCCeEEEEECcCCCCCCCCc-cccc-cCHHHHHHHHHHHHCCCEEEEEeC
Confidence 45788999999998764321 1100 012355667888889999999975
No 47
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=48.73 E-value=28 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=33.7
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
.|.+++=+-|.++.+ ...+.+..+.|.+++++|.++++++|
T Consensus 6 ~kli~~DlDGTLl~~-------~~~~~~~~~ai~~l~~~Gi~v~laTg 46 (266)
T 3pdw_A 6 YKGYLIDLDGTMYNG-------TEKIEEACEFVRTLKDRGVPYLFVTN 46 (266)
T ss_dssp CSEEEEECSSSTTCH-------HHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEeCcCceEeC-------CEeCccHHHHHHHHHHCCCeEEEEeC
Confidence 678999999997753 34556777888999999999999987
No 48
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=48.03 E-value=66 Score=25.32 Aligned_cols=68 Identities=18% Similarity=0.065 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 174 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad 174 (267)
|...+.+.|.+.|+.+....... ++ ...+.+.+.++++...+.|++|. .....-|.+...+|..++.+
T Consensus 24 N~~~l~~~L~~~G~~v~~~~iv~-Dd--~~~I~~~l~~a~~~~DlVittGG--~g~~~~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFVVM-DD--LDEIGWAFRVALEVSDLVVSSGG--LGPTFDDMTVEGFAKCIGQD 91 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEC-SC--HHHHHHHHHHHHHHCSEEEEESC--CSSSTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCEEEEEEEeC-CC--HHHHHHHHHHHHhcCCEEEEcCC--CcCCcccchHHHHHHHcCCC
Confidence 44556778889998765432111 11 11233345566666778888874 44577799999999999865
No 49
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=44.50 E-value=25 Score=28.96 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=35.9
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
++++|.||-+..+- + +++.. -.++.+.+.+.|+++.|++|+....+.+.|.
T Consensus 6 li~~DlDGTLl~~~------~---~i~~~----------~~~~l~~l~~~g~~~~iaTGR~~~~~~~~l~ 56 (246)
T 3f9r_A 6 LLLFDVDGTLTPPR------L---CQTDE----------MRALIKRARGAGFCVGTVGGSDFAKQVEQLG 56 (246)
T ss_dssp EEEECSBTTTBSTT------S---CCCHH----------HHHHHHHHHHTTCEEEEECSSCHHHHHHHHC
T ss_pred EEEEeCcCCcCCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHhh
Confidence 57899999775421 1 23321 1355777788999999999999888777665
No 50
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=41.29 E-value=36 Score=28.06 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=31.0
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.|.++.=+-|+++.++. .+..+. +.+.|.++.+.|+++++++|=
T Consensus 2 ~~kli~~DlDGTLl~~~~--~i~~~~---~~~al~~l~~~G~~~~iaTGR 46 (271)
T 1rlm_A 2 AVKVIVTDMDGTFLNDAK--TYNQPR---FMAQYQELKKRGIKFVVASGN 46 (271)
T ss_dssp CCCEEEECCCCCCSCTTS--CCCHHH---HHHHHHHHHHHTCEEEEECSS
T ss_pred CccEEEEeCCCCCCCCCC--cCCHHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 457889999999886532 455543 234466677779999999753
No 51
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=40.56 E-value=44 Score=27.69 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=33.9
Q ss_pred EEEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 176 VLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 176 Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
-++++|.||=+-.+. .+ ++. . -.++.+.+.+.|+++.|++|+....+..++
T Consensus 10 ~li~~DlDGTLl~~~-----~~----~~~---------~-~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~ 60 (275)
T 1xvi_A 10 LLVFSDLDGTLLDSH-----SY----DWQ---------P-AAPWLTRLREANVPVILCSSKTSAEMLYLQ 60 (275)
T ss_dssp EEEEEECTTTTSCSS-----CC----SCC---------T-THHHHHHHHHTTCCEEEECSSCHHHHHHHH
T ss_pred eEEEEeCCCCCCCCC-----Cc----CCH---------H-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 467899999775321 11 110 0 145667777899999999999887776554
No 52
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=40.21 E-value=22 Score=27.41 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=31.2
Q ss_pred EEeeccCccccCCCC-CCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~-~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.++.|+||.+.+... ..++.+.+..++... .++.+.+.+.|+++.|++++....+..++
T Consensus 10 ~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~----------~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~ 69 (180)
T 1k1e_A 10 FVITDVDGVLTDGQLHYDANGEAIKSFHVRD----------GLGIKMLMDADIQVAVLSGRDSPILRRRI 69 (180)
T ss_dssp EEEEECTTTTSCSEEEEETTEEEEEEEEHHH----------HHHHHHHHHTTCEEEEEESCCCHHHHHHH
T ss_pred EEEEeCCCCcCCCCeeeccCcceeeeeccch----------HHHHHHHHHCCCeEEEEeCCCcHHHHHHH
Confidence 367899999874211 111222333333221 24455566677777777776655554444
No 53
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=40.07 E-value=35 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=34.2
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||-+-.+ + .+++.. -.++.+.+.+.|+.+.|+.||....+..++
T Consensus 7 li~~DlDGTLl~~-----~----~~i~~~----------~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~ 56 (282)
T 1rkq_A 7 LIAIDMDGTLLLP-----D----HTISPA----------VKNAIAAARARGVNVVLTTGRPYAGVHNYL 56 (282)
T ss_dssp EEEECCCCCCSCT-----T----SCCCHH----------HHHHHHHHHHTTCEEEEECSSCGGGTHHHH
T ss_pred EEEEeCCCCCCCC-----C----CcCCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 4789999977642 1 123322 135566778899999999999887776554
No 54
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=39.24 E-value=47 Score=27.22 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=32.4
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.|.++.=+-|+++.++. .++++ ..+.|.++.+.|+++++++|-
T Consensus 2 M~~kli~~DlDGTLl~~~~--~i~~~----~~~~l~~l~~~g~~~~iaTGR 46 (246)
T 3f9r_A 2 MKRVLLLFDVDGTLTPPRL--CQTDE----MRALIKRARGAGFCVGTVGGS 46 (246)
T ss_dssp CCSEEEEECSBTTTBSTTS--CCCHH----HHHHHHHHHHTTCEEEEECSS
T ss_pred CCceEEEEeCcCCcCCCCC--ccCHH----HHHHHHHHHHCCCEEEEECCC
Confidence 4567888899999876543 45543 445577888899999999753
No 55
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=39.14 E-value=47 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.416 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCeEEEEECCch
Q 024480 41 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGN 73 (267)
Q Consensus 41 ~~~~~~~l~~l~~~I~~l~~-~g~~vViVhGgG~ 73 (267)
+.++.+.+..+.+.+.++.. ...++||+.|+|.
T Consensus 27 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~ 60 (258)
T 4fzw_A 27 NALNNALLMQLVNELEAAATDTSISVCVITGNAR 60 (258)
T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 46788899999988887764 3569999998873
No 56
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=38.94 E-value=25 Score=26.31 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEeeccCccccCCCCC-CCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~-~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.+++|.||.+...... .+..+.++.++.. ..++...+.+.|+++.|++++....+...+
T Consensus 11 ~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l 70 (162)
T 2p9j_A 11 LLIMDIDGVLTDGKLYYTEHGETIKVFNVL----------DGIGIKLLQKMGITLAVISGRDSAPLITRL 70 (162)
T ss_dssp EEEECCTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHTTTCEEEEEESCCCHHHHHHH
T ss_pred EEEEecCcceECCceeecCCCceeeeeccc----------HHHHHHHHHHCCCEEEEEeCCCcHHHHHHH
Confidence 3678999998742110 1112222333221 123444455556666666555444444444
No 57
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=36.80 E-value=24 Score=28.77 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=32.5
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.|.+++=+-|.++.++. +- ....+.|+++++.|+++++++|.
T Consensus 7 ~~kli~~DlDGTLl~~~~---~~----~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVT---PI----PEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp CCSEEEEECBTTTEETTE---EC----HHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCEEEEcCcCcEECCCE---eC----cCHHHHHHHHHHcCCeEEEEeCc
Confidence 468899999999876432 22 34556788888999999999974
No 58
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=34.44 E-value=25 Score=29.36 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=31.5
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
.|.++.=+-|+++.++. .++++ ..+.|.++.+.|+++++++|=
T Consensus 5 ~kli~~DlDGTLl~~~~--~i~~~----~~~aL~~l~~~Gi~vviaTGR 47 (282)
T 1rkq_A 5 IKLIAIDMDGTLLLPDH--TISPA----VKNAIAAARARGVNVVLTTGR 47 (282)
T ss_dssp CCEEEECCCCCCSCTTS--CCCHH----HHHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEeCCCCCCCCCC--cCCHH----HHHHHHHHHHCCCEEEEEcCC
Confidence 57899999999886532 45554 345577788889999999753
No 59
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=34.32 E-value=23 Score=29.48 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=31.3
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
..++.|.++.=+-|+++.+.. .+... ..+.|.++.++|+++++++|
T Consensus 17 ~~~~~kli~~DlDGTLl~~~~--~i~~~----~~~al~~l~~~G~~v~iaTG 62 (285)
T 3pgv_A 17 FQGMYQVVASDLDGTLLSPDH--FLTPY----AKETLKLLTARGINFVFATG 62 (285)
T ss_dssp ----CCEEEEECCCCCSCTTS--CCCHH----HHHHHHHHHTTTCEEEEECS
T ss_pred ccCcceEEEEeCcCCCCCCCC--cCCHH----HHHHHHHHHHCCCEEEEEcC
Confidence 446678899999999886532 35543 44556777888999999874
No 60
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=33.13 E-value=35 Score=27.95 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=24.1
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.|.++.=+-|+++.+.. .+.. ...+.|+++.+.|.++++++|=
T Consensus 3 m~~kli~~DlDGTLl~~~~--~i~~----~~~~al~~l~~~G~~~~iaTGR 47 (279)
T 3mpo_A 3 LTIKLIAIDIDGTLLNEKN--ELAQ----ATIDAVQAAKAQGIKVVLCTGR 47 (279)
T ss_dssp --CCEEEECC-------------CH----HHHHHHHHHHHTTCEEEEECSS
T ss_pred cceEEEEEcCcCCCCCCCC--cCCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 4567899999999876432 2333 4455677788899999998753
No 61
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=32.36 E-value=46 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=33.2
Q ss_pred cCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 19 PSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 19 ~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.++.|.++.=+-|+++.+.. ..+.. ...+.|+++.++|+++++++|=
T Consensus 17 ~~~~~kli~~DlDGTLl~~~~-~~i~~----~~~~al~~l~~~G~~v~iaTGR 64 (283)
T 3dao_A 17 FQGMIKLIATDIDGTLVKDGS-LLIDP----EYMSVIDRLIDKGIIFVVCSGR 64 (283)
T ss_dssp --CCCCEEEECCBTTTBSTTC-SCCCH----HHHHHHHHHHHTTCEEEEECSS
T ss_pred hccCceEEEEeCcCCCCCCCC-CcCCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 567788999999999886432 13444 3445567778889999998753
No 62
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=32.15 E-value=56 Score=26.25 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=31.6
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
..|.++.=+-|+++.++. .++++ ..+.|.++++.|+++++++|-
T Consensus 4 m~kli~~DlDGTLl~~~~--~i~~~----~~~~l~~l~~~g~~~~i~TGr 47 (227)
T 1l6r_A 4 MIRLAAIDVDGNLTDRDR--LISTK----AIESIRSAEKKGLTVSLLSGN 47 (227)
T ss_dssp CCCEEEEEHHHHSBCTTS--CBCHH----HHHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEEECCCCCcCCCC--cCCHH----HHHHHHHHHHCCCEEEEECCC
Confidence 357899999999886532 45553 345577788889999999754
No 63
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=30.06 E-value=40 Score=28.50 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=33.2
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
++++|.||-+-.+. + . .++.. -.++.+.+.+.|+.+.|+.||....+..++
T Consensus 29 li~~DlDGTLl~~~----~-~---~is~~----------~~~al~~l~~~Gi~v~iaTGR~~~~~~~~~ 79 (301)
T 2b30_A 29 LLLIDFDGTLFVDK----D-I---KVPSE----------NIDAIKEAIEKGYMVSICTGRSKVGILSAF 79 (301)
T ss_dssp EEEEETBTTTBCCT----T-T---CSCHH----------HHHHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCCcCCC----C-C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHh
Confidence 47799999876420 1 1 13321 134566677789999999999877666554
No 64
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=30.00 E-value=31 Score=27.69 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=30.4
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
.|.++.=+-|+++.+.. .+.+ ...+.+.++.+.|+++++++|-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~----~~~~al~~l~~~G~~v~i~TGR 45 (231)
T 1wr8_A 3 IKAISIDIDGTITYPNR--MIHE----KALEAIRRAESLGIPIMLVTGN 45 (231)
T ss_dssp CCEEEEESTTTTBCTTS--CBCH----HHHHHHHHHHHTTCCEEEECSS
T ss_pred eeEEEEECCCCCCCCCC--cCCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 57889999999876432 3444 3445567777889999998753
No 65
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=29.89 E-value=37 Score=27.71 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=31.8
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.|.+++=+-|.++..+. .+ ....+.|+++++.|.++++++|.
T Consensus 4 ~~kli~~DlDGTLl~~~~--~i-----~~~~eal~~l~~~G~~vvl~Tn~ 46 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKS--RI-----PAGERFIERLQEKGIPYMLVTNN 46 (264)
T ss_dssp CCCEEEECCBTTTEETTE--EC-----HHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCEEEEeCCCceEeCCE--EC-----cCHHHHHHHHHHCCCeEEEEeCC
Confidence 467899999999776432 22 34556678888889999999853
No 66
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=29.62 E-value=81 Score=25.40 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=33.4
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.+++|.||-+-+.- . .++.. -.++.+.+.+.|+.+.++.|+.+..+...+.
T Consensus 7 li~fDlDGTLl~~~------~---~i~~~----------~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~ 57 (274)
T 3fzq_A 7 LLILDIDGTLRDEV------Y---GIPES----------AKHAIRLCQKNHCSVVICTGRSMGTIQDDVL 57 (274)
T ss_dssp EEEECSBTTTBBTT------T---BCCHH----------HHHHHHHHHHTTCEEEEECSSCTTTSCHHHH
T ss_pred EEEEECCCCCCCCC------C---cCCHH----------HHHHHHHHHHCCCEEEEEeCCChHHHHHHHH
Confidence 36789999775321 1 22221 1355666788899999999998776665553
No 67
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=28.93 E-value=48 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=31.8
Q ss_pred ccceEEEEeccccccC-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAG-DHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~-~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.|.++.=+-|+++.+ +. .+.++ ..+.|.++.+.|+++++++|=
T Consensus 26 ~ikli~~DlDGTLl~~~~~--~is~~----~~~al~~l~~~Gi~v~iaTGR 70 (301)
T 2b30_A 26 DIKLLLIDFDGTLFVDKDI--KVPSE----NIDAIKEAIEKGYMVSICTGR 70 (301)
T ss_dssp CCCEEEEETBTTTBCCTTT--CSCHH----HHHHHHHHHHHTCEEEEECSS
T ss_pred cccEEEEECCCCCcCCCCC--ccCHH----HHHHHHHHHHCCCEEEEEcCC
Confidence 3578999999998875 32 45554 345567777789999999753
No 68
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=28.29 E-value=30 Score=28.79 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=31.3
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.+.++.=+-|+++..+. .+.. +..+.|.++.+.|+++++++|-
T Consensus 7 m~~~li~~DlDGTLl~~~~--~~~~----~~~~~l~~l~~~G~~~~iaTGR 51 (275)
T 1xvi_A 7 QQPLLVFSDLDGTLLDSHS--YDWQ----PAAPWLTRLREANVPVILCSSK 51 (275)
T ss_dssp CCCEEEEEECTTTTSCSSC--CSCC----TTHHHHHHHHHTTCCEEEECSS
T ss_pred cCceEEEEeCCCCCCCCCC--cCCH----HHHHHHHHHHHCCCeEEEEcCC
Confidence 5567899999999886432 1221 2345577777889999999754
No 69
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=28.04 E-value=45 Score=27.07 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=31.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
++.|.++.=+-|+++.... ..+.. ...+.|+++.++|+++++++|
T Consensus 10 ~miKli~~DlDGTLl~~~~-~~i~~----~~~~al~~l~~~G~~~~iaTG 54 (268)
T 3r4c_A 10 HMIKVLLLDVDGTLLSFET-HKVSQ----SSIDALKKVHDSGIKIVIATG 54 (268)
T ss_dssp SCCCEEEECSBTTTBCTTT-CSCCH----HHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEEEeCCCCCcCCCC-CcCCH----HHHHHHHHHHHCCCEEEEEcC
Confidence 4568899999999876221 13444 344557777888999999874
No 70
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=27.98 E-value=34 Score=28.05 Aligned_cols=45 Identities=16% Similarity=0.362 Sum_probs=31.8
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.|.++.=+-|+++.+.. .+.. ...+.|+++.+.|+++++++|=
T Consensus 3 M~~kli~fDlDGTLl~~~~--~i~~----~~~~al~~l~~~G~~~~iaTGR 47 (279)
T 4dw8_A 3 LKYKLIVLDLDGTLTNSKK--EISS----RNRETLIRIQEQGIRLVLASGR 47 (279)
T ss_dssp -CCCEEEECCCCCCSCTTS--CCCH----HHHHHHHHHHHTTCEEEEECSS
T ss_pred CcceEEEEeCCCCCCCCCC--ccCH----HHHHHHHHHHHCCCEEEEEcCC
Confidence 4568899999999886542 3444 3445567778889999998753
No 71
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=27.78 E-value=54 Score=25.35 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=8.8
Q ss_pred EeeccCccccC
Q 024480 178 KATNVDGVYDD 188 (267)
Q Consensus 178 ~lTDVdGVy~~ 188 (267)
++.|.||++..
T Consensus 29 vifD~DGTL~~ 39 (188)
T 2r8e_A 29 LILDVDGVLSD 39 (188)
T ss_dssp EEECCCCCCBC
T ss_pred EEEeCCCCcCC
Confidence 55799999874
No 72
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=27.73 E-value=81 Score=24.72 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.9
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCC-CeEEEEECC
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLG-IEVAIVVGG 71 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g-~~vViVhGg 71 (267)
.+++-..|-.++. ..+++.|.++...| .+++.|.||
T Consensus 73 vI~LD~~Gk~~sS-----------~~fA~~l~~~~~~G~~~i~FvIGG 109 (167)
T 1to0_A 73 VIALAIEGKMKTS-----------EELADTIDKLATYGKSKVTFVIGG 109 (167)
T ss_dssp EEEEEEEEEECCH-----------HHHHHHHHHHHTTTCCEEEEEECC
T ss_pred EEEEcCCCCcCCH-----------HHHHHHHHHHHhcCCceEEEEEEC
Confidence 5777788887763 46888898888888 689999964
No 73
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=27.47 E-value=2.8e+02 Score=24.77 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEE
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 178 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~Ad~Li~ 178 (267)
|...+.+.|++.|..+...... .++ ...+.+.+.+.++...+.|++| |.....-|.+...++..++.+ +.|
T Consensus 209 N~~~L~~~l~~~G~~v~~~~iv-~Dd--~~~i~~~l~~a~~~~DlVittG--G~s~g~~D~t~~al~~~lg~~-~~f 279 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINLGIV-GDN--PDDLLNALNEGISRADVIITSG--GVSMGEKDYLKQVLDIDLHAQ-IHF 279 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEE-CSS--HHHHHHHHHHHHHHCSEEEEES--CCSSSCCHHHHHHHHTTTCCE-EEE
T ss_pred chHHHHHHHHHCCCEEEEEeec-CCC--HHHHHHHHHHHHhcCCEEEEcC--CCcCCCcccHHHHHHHHcCCc-eEE
Confidence 4455667888899876533211 111 1123344555665566778887 345678899999998888874 544
No 74
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=26.56 E-value=99 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=29.4
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEECCchH
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGI-EVAIVVGGGNI 74 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~-~vViVhGgG~~ 74 (267)
..+++-..|-.++. ..+++.|.++...|. +++.|.| |+.
T Consensus 76 ~vI~LD~~Gk~~sS-----------~~fA~~l~~~~~~g~~~i~FvIG-G~~ 115 (163)
T 4fak_A 76 TVITLEIQGKMLSS-----------EGLAQELNQRMTQGQSDFVFVIG-GSN 115 (163)
T ss_dssp EEEEEEEEEEECCH-----------HHHHHHHHHHHHTTCCEEEEEEC-BTT
T ss_pred EEEEEcCCCCcCCH-----------HHHHHHHHHHHhcCCcceEEEEE-CCC
Confidence 35677788887763 468888999988885 8999996 454
No 75
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=26.54 E-value=68 Score=24.84 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.3
Q ss_pred eEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCchH
Q 024480 25 RVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGGGNI 74 (267)
Q Consensus 25 ~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGgG~~ 74 (267)
.+++-..|-.++. ..+++.|.++...|.+++.|.| |+.
T Consensus 69 vi~Ld~~Gk~~sS-----------~~fA~~l~~~~~~g~~i~FvIG-G~~ 106 (155)
T 1ns5_A 69 IVTLDIPGKPWDT-----------PQLAAELERWKLDGRDVSLLIG-GPE 106 (155)
T ss_dssp EEEEEEEEECCCH-----------HHHHHHHHHHHHHCSCEEEEEC-BTT
T ss_pred EEEEcCCCCcCCH-----------HHHHHHHHHHHhcCCeEEEEEE-CCC
Confidence 5677777777663 4688888888877878999995 553
No 76
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=26.50 E-value=68 Score=26.53 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=0.0
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.+++|.||-+-++-+..+... .++.+.+.+.|+++.++.|+....+..++.
T Consensus 6 li~~DlDGTLl~~~~~i~~~~-------------------~~al~~l~~~G~~~~iaTGR~~~~~~~~~~ 56 (288)
T 1nrw_A 6 LIAIDLDGTLLNSKHQVSLEN-------------------ENALRQAQRDGIEVVVSTGRAHFDVMSIFE 56 (288)
T ss_dssp EEEEECCCCCSCTTSCCCHHH-------------------HHHHHHHHHTTCEEEEECSSCHHHHHHHHG
T ss_pred EEEEeCCCCCCCCCCccCHHH-------------------HHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
No 77
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=26.42 E-value=73 Score=25.39 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.+++|.||-+.++ + . .++.. -.++++.+.+.|+++.+++|+.+..+.+++
T Consensus 5 li~~DlDGTLl~~-----~-~---~i~~~----------~~~al~~l~~~G~~v~i~TGR~~~~~~~~~ 54 (231)
T 1wr8_A 5 AISIDIDGTITYP-----N-R---MIHEK----------ALEAIRRAESLGIPIMLVTGNTVQFAEAAS 54 (231)
T ss_dssp EEEEESTTTTBCT-----T-S---CBCHH----------HHHHHHHHHHTTCCEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCCCCC-----C-C---cCCHH----------HHHHHHHHHHCCCEEEEEcCCChhHHHHHH
Confidence 3678999977532 1 1 12221 134566667889999999998876665443
No 78
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=26.09 E-value=61 Score=26.18 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=30.8
Q ss_pred ccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 22 KWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 22 ~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
+.|.++.=+-|+++.++. .+... ..+.|+++.+.|+++++.+|-
T Consensus 2 ~~kli~~DlDGTLl~~~~--~i~~~----~~~al~~l~~~G~~~~~aTGR 45 (258)
T 2pq0_A 2 GRKIVFFDIDGTLLDEQK--QLPLS----TIEAVRRLKQSGVYVAIATGR 45 (258)
T ss_dssp CCCEEEECTBTTTBCTTS--CCCHH----HHHHHHHHHHTTCEEEEECSS
T ss_pred CceEEEEeCCCCCcCCCC--ccCHH----HHHHHHHHHHCCCEEEEECCC
Confidence 357788889999886542 34443 445577788889999988753
No 79
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=25.03 E-value=2.3e+02 Score=21.76 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhC--CCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 172 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~--g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~ 172 (267)
|...+.+.|.+.|..+...... .++ ...+.+.+.++++. ..+.|++|. .....-|.+...++..++
T Consensus 29 n~~~l~~~L~~~G~~v~~~~iv-~Dd--~~~i~~~l~~a~~~~~~DlVittGG--~g~~~~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 29 SGHYLRDSAQEAGHHVVDKAIV-KEN--RYAIRAQVSAWIASDDVQVVLITGG--TGLTEGDQAPEALLPLFD 96 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE-CSC--HHHHHHHHHHHHHSSSCCEEEEESC--CSSSTTCCHHHHHGGGCS
T ss_pred cHHHHHHHHHHCCCeEeEEEEe-CCC--HHHHHHHHHHHHhcCCCCEEEeCCC--CCCCCCCCHHHHHHHHhc
Confidence 4455677888899876532211 111 11233445566664 567788874 345667888888887775
No 80
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=24.53 E-value=95 Score=22.39 Aligned_cols=44 Identities=11% Similarity=0.327 Sum_probs=28.4
Q ss_pred ceEEEEeccccccCCCC----CCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 24 QRVLLKVSGEALAGDHT----QNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~----~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|.+++=+-|+++.+... ..+. ....+.+.++.+.|.++++++|-
T Consensus 2 k~i~~DlDGTL~~~~~~~~~~~~~~----~~~~~~l~~l~~~Gi~~~iaTGR 49 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPR----LDVIEQLREYHQLGFEIVISTAR 49 (126)
T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBC----HHHHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEecCCCCCCCCCCccccCCCC----HHHHHHHHHHHhCCCeEEEEeCC
Confidence 56677778887654321 0122 23556677888889999999863
No 81
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.53 E-value=35 Score=28.18 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|+.|.++.=+-|+++.+.. .+.. ...+.|.++.+.|+++++++|=
T Consensus 4 M~~kli~fDlDGTLl~~~~--~i~~----~~~~al~~l~~~G~~~~iaTGR 48 (290)
T 3dnp_A 4 MSKQLLALNIDGALLRSNG--KIHQ----ATKDAIEYVKKKGIYVTLVTNR 48 (290)
T ss_dssp --CCEEEECCCCCCSCTTS--CCCH----HHHHHHHHHHHTTCEEEEBCSS
T ss_pred CcceEEEEcCCCCCCCCCC--ccCH----HHHHHHHHHHHCCCEEEEECCC
Confidence 4568899999999886542 3444 3445567778889999998753
No 82
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=24.45 E-value=50 Score=28.74 Aligned_cols=41 Identities=2% Similarity=0.057 Sum_probs=25.1
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIV 68 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViV 68 (267)
|++|++.|=+||.+-.. .-.+..-...++.|.+.|++++.|
T Consensus 1 M~kkkv~vl~GG~S~E~-------evSl~Sa~~v~~aL~~~gy~v~~i 41 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEY-------EVSLQSASAVFENINTNKFDIIPI 41 (357)
T ss_dssp -CCEEEEEEEECSSTTH-------HHHHHHHHHHHHHSCTTTEEEEEE
T ss_pred CCCCEEEEEECCCccch-------HHHHHHHHHHHHHHhHhCCEEEEE
Confidence 56677777799986542 112222233355677789999988
No 83
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=23.60 E-value=74 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCeEEEEECCchHHhhhHH
Q 024480 51 IAREVASVTRLGIEVAIVVGGGNIFRGASA 80 (267)
Q Consensus 51 l~~~I~~l~~~g~~vViVhGgG~~~~~~~~ 80 (267)
+.+.+++|.++|.+=|+|.|||.....+.+
T Consensus 131 l~~~l~~L~~~g~~~ilveGG~~l~~s~l~ 160 (219)
T 2azn_A 131 LKKLMDILYDKGIKSILLEGGGTLNWGMFK 160 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeCHHHHHHHHH
Confidence 344566666667777888877665544433
No 84
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=23.46 E-value=1.2e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHCCC-eEEEEECCch
Q 024480 46 KITMAIAREVASVTRLGI-EVAIVVGGGN 73 (267)
Q Consensus 46 ~~l~~l~~~I~~l~~~g~-~vViVhGgG~ 73 (267)
++...+.+.|.+....|. .+.||||=|.
T Consensus 16 eA~~~l~~fl~~a~~~g~~~v~IIHGkG~ 44 (83)
T 2zqe_A 16 EALLEVDQALEEARALGLSTLRLLHGKGT 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCc
Confidence 456677777877777776 6678998553
No 85
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=23.16 E-value=1.4e+02 Score=23.92 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=26.1
Q ss_pred ecCCCCCccCCccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Q 024480 11 LNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVV 69 (267)
Q Consensus 11 ~~~~~~~~~~~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVh 69 (267)
-+||.+.......+ +++=+||+. . .+.++++ .+++.| +.|+||
T Consensus 20 ~~~~~~~~~~s~~~-~ifll~g~I-~----------~L~~iv~---~ik~~g-K~vivh 62 (188)
T 1vkf_A 20 ALWDMDSIGEIEPD-VVFLLKSDI-L----------NLKFHLK---ILKDRG-KTVFVD 62 (188)
T ss_dssp EESCSSSCCCCCSS-EEEECCEET-T----------THHHHHH---HHHHTT-CEEEEE
T ss_pred HHhhhcccccCCCC-EEEEEeCcH-H----------HHHHHHH---HHHHCC-CeEEEe
Confidence 37888777554444 555578874 3 2455544 445555 778888
No 86
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=22.99 E-value=49 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=30.5
Q ss_pred cceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 23 WQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 23 ~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
.|.++.=+-|+++.+.. .+.. ...+.|+++.++|+++++++|=
T Consensus 5 ~kli~fDlDGTLl~~~~--~i~~----~~~~al~~l~~~G~~~~iaTGR 47 (274)
T 3fzq_A 5 YKLLILDIDGTLRDEVY--GIPE----SAKHAIRLCQKNHCSVVICTGR 47 (274)
T ss_dssp CCEEEECSBTTTBBTTT--BCCH----HHHHHHHHHHHTTCEEEEECSS
T ss_pred ceEEEEECCCCCCCCCC--cCCH----HHHHHHHHHHHCCCEEEEEeCC
Confidence 47889999999886543 3444 3445567778889999998753
No 87
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.97 E-value=2.5e+02 Score=21.42 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 172 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~--~g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~ 172 (267)
|...+.+.|++.|..+...... .++ ...+.+.+.++++ ...+.|++|. .....-|.+...++..++
T Consensus 32 n~~~l~~~L~~~G~~v~~~~iv-~Dd--~~~i~~~l~~~~~~~~~DlVittGG--~g~g~~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEIV-KDD--KESIQQAVLAGYHKEDVDVVLTNGG--TGITKRDVTIEAVSALLD 99 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEE-CSS--HHHHHHHHHHHHTCTTCSEEEEECC--CSSSTTCCHHHHHHTTCS
T ss_pred hHHHHHHHHHHCCCeEeEEEEe-CCC--HHHHHHHHHHHHhcCCCCEEEEcCC--CCCCCCCCcHHHHHHHcC
Confidence 4455667888889876532211 111 1123344556666 5567888874 334566888888877664
No 88
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=22.77 E-value=1.1e+02 Score=27.47 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=43.8
Q ss_pred cHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCcccccccCHHHHhhc--CCC--cc--h-HHHHHHHHhCCCcEEE
Q 024480 160 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--DLS--VM--D-MTAITLCQENNIPVVV 232 (267)
Q Consensus 160 sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~l--g~g--~m--k-~~aa~~a~~~Gi~v~I 232 (267)
+..+|..++...+...=.+..|+||++++ +.+ .+-. .+..+. |.+ .. . .+.++.+.+.|+++.|
T Consensus 207 a~~~~~~~~~l~~~~iK~lv~DvDnTL~~-------G~l-~~dG-~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI 277 (387)
T 3nvb_A 207 SSRTIDIIAAIQGKFKKCLILDLDNTIWG-------GVV-GDDG-WENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAV 277 (387)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCBTTTBB-------SCH-HHHC-GGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCC-------Cee-cCCC-ceeEEeccCccccccCHHHHHHHHHHHHCCCEEEE
Confidence 35555555555555444567899999985 222 1000 000111 221 11 1 2345667888999888
Q ss_pred EcCCCCCcHHHHhc
Q 024480 233 FNLNQPGNIAKAIQ 246 (267)
Q Consensus 233 ~ng~~~~~i~~~l~ 246 (267)
++++....+.+.+.
T Consensus 278 ~Snn~~~~v~~~l~ 291 (387)
T 3nvb_A 278 CSKNNEGKAKEPFE 291 (387)
T ss_dssp EEESCHHHHHHHHH
T ss_pred EcCCCHHHHHHHHh
Confidence 88887777777663
No 89
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=22.63 E-value=1e+02 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=32.9
Q ss_pred EEeeccCccccCCCCCCCCcccccccCHHHHhhcCCCcchHHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 177 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 177 i~lTDVdGVy~~dP~~~~~a~li~~Is~~e~~~lg~g~mk~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.+++|.||-+-++- . .++.. -.++.+.+.+.|+.+.++.|+....+.+++
T Consensus 7 li~fDlDGTLl~~~------~---~i~~~----------~~~al~~l~~~G~~~~iaTGR~~~~~~~~~ 56 (279)
T 4dw8_A 7 LIVLDLDGTLTNSK------K---EISSR----------NRETLIRIQEQGIRLVLASGRPTYGIVPLA 56 (279)
T ss_dssp EEEECCCCCCSCTT------S---CCCHH----------HHHHHHHHHHTTCEEEEECSSCHHHHHHHH
T ss_pred EEEEeCCCCCCCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 36789999775321 1 22221 135566777889999999999877776554
No 90
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=22.60 E-value=49 Score=27.72 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=31.6
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|+.|.++.=+-|+++.... .+.... ..+.|+++.++|+++++++|
T Consensus 35 M~iKli~fDlDGTLld~~~--~i~~~~---~~~al~~l~~~G~~~~iaTG 79 (304)
T 3l7y_A 35 MSVKVIATDMDGTFLNSKG--SYDHNR---FQRILKQLQERDIRFVVASS 79 (304)
T ss_dssp -CCSEEEECCCCCCSCTTS--CCCHHH---HHHHHHHHHHTTCEEEEECS
T ss_pred eeeEEEEEeCCCCCCCCCC--ccCHHH---HHHHHHHHHHCCCEEEEEeC
Confidence 5678999999999886532 344431 34556777888999999874
No 91
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=22.21 E-value=91 Score=25.66 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHHhc
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 246 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l~ 246 (267)
.++++.+.+.|+.+.++.|+....+..++.
T Consensus 45 ~~al~~l~~~G~~v~iaTGR~~~~~~~~~~ 74 (283)
T 3dao_A 45 MSVIDRLIDKGIIFVVCSGRQFSSEFKLFA 74 (283)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHTG
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 355666778899999999998877766553
No 92
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=21.68 E-value=2.3e+02 Score=23.53 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCeEEEEECCch-HHhh
Q 024480 41 QNIDPKITMAIAREVASVTR-LGIEVAIVVGGGN-IFRG 77 (267)
Q Consensus 41 ~~~~~~~l~~l~~~I~~l~~-~g~~vViVhGgG~-~~~~ 77 (267)
+.++.+.+..+.+.+.++.+ ...++||+.|.|. |..+
T Consensus 39 Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG 77 (279)
T 3g64_A 39 NALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSG 77 (279)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecC
Confidence 46889999999998888765 3579999998863 4433
No 93
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=21.49 E-value=1e+02 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=22.8
Q ss_pred CEEEEeCCCCCCCCCcHHHHHHHHH-hcC-CcEEEEeeccCcccc
Q 024480 145 RVVIFAAGTGNPFFTTDTAAALRCA-EIN-AEVVLKATNVDGVYD 187 (267)
Q Consensus 145 ~iPIi~g~~g~~~~~sD~~Aa~lA~-~l~-Ad~Li~lTDVdGVy~ 187 (267)
.+.+++| .+++=|+++..++. +++ -.+=+++-+++|.|+
T Consensus 108 a~I~lpG----G~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~ 148 (216)
T 1ydh_A 108 AFIALPG----GYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYN 148 (216)
T ss_dssp EEEECSC----SHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTH
T ss_pred EEEEeCC----CccHHHHHHHHHHHHHhcccCCCEEEecCCccch
Confidence 3455554 25677888877653 222 234455567888776
No 94
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A
Probab=21.30 E-value=1.3e+02 Score=24.04 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=31.0
Q ss_pred CccceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Q 024480 21 YKWQRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVG 70 (267)
Q Consensus 21 ~~~~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhG 70 (267)
|+.|.++.=+-|+++.++. .++++ ..+.|+++.+. +++++++|
T Consensus 4 ~~~kli~~DlDGTLl~~~~--~i~~~----~~~al~~l~~~-i~v~iaTG 46 (246)
T 2amy_A 4 PGPALCLFDVDGTLTAPRQ--KITKE----MDDFLQKLRQK-IKIGVVGG 46 (246)
T ss_dssp CCSEEEEEESBTTTBCTTS--CCCHH----HHHHHHHHTTT-SEEEEECS
T ss_pred CCceEEEEECCCCcCCCCc--ccCHH----HHHHHHHHHhC-CeEEEEcC
Confidence 5668899999999887542 45554 44556777777 88888875
No 95
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.24 E-value=2.9e+02 Score=21.39 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCCeeEeeccccccccchHHHHHHHHHhhC--CCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 024480 102 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 172 (267)
Q Consensus 102 ~~~l~~~~l~~~Gi~~~~~~~~~~~~~~~~~~~~~l~~ll~~--g~iPIi~g~~g~~~~~sD~~Aa~lA~~l~ 172 (267)
|...+.+.|++.|..+...... .++ ...+.+.+.+.++. -.+.|++|. .....-|.+...++..++
T Consensus 41 n~~~L~~~l~~~G~~v~~~~iv-~Dd--~~~I~~al~~a~~~~~~DlVittGG--~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSLV-PDD--KIKILKAFTDALSIDEVDVIISTGG--TGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE-CSC--HHHHHHHHHHHHTCTTCCEEEEESC--CSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHHHCCCEEEEEEEe-CCC--HHHHHHHHHHHHhcCCCCEEEECCC--CCCCCCcchHHHHHHHhc
Confidence 4455677888899876532211 111 11233445566665 467888874 445677888888887765
No 96
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=21.00 E-value=1.1e+02 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCCcHHHHh
Q 024480 217 MTAITLCQENNIPVVVFNLNQPGNIAKAI 245 (267)
Q Consensus 217 ~~aa~~a~~~Gi~v~I~ng~~~~~i~~~l 245 (267)
.++++.+.+.|+.+.|+.|+.+..+.+++
T Consensus 44 ~~al~~l~~~G~~v~iaTGR~~~~~~~~~ 72 (285)
T 3pgv_A 44 KETLKLLTARGINFVFATGRHYIDVGQIR 72 (285)
T ss_dssp HHHHHHHHTTTCEEEEECSSCGGGGHHHH
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 34566677889999999998877776554
No 97
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=20.93 E-value=1.1e+02 Score=24.49 Aligned_cols=26 Identities=12% Similarity=0.108 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCcEEEEcCCCCCcHHH
Q 024480 218 TAITLCQENNIPVVVFNLNQPGNIAK 243 (267)
Q Consensus 218 ~aa~~a~~~Gi~v~I~ng~~~~~i~~ 243 (267)
++.+.+.+.|+++.++.|+....+..
T Consensus 27 ~al~~l~~~G~~~~~aTGR~~~~~~~ 52 (258)
T 2pq0_A 27 EAVRRLKQSGVYVAIATGRAPFMFEH 52 (258)
T ss_dssp HHHHHHHHTTCEEEEECSSCGGGSHH
T ss_pred HHHHHHHHCCCEEEEECCCChHHHHH
Confidence 44566667788888888877655544
No 98
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=20.56 E-value=1.2e+02 Score=24.31 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 024480 157 FFTTDTAAALRCAEINAEVVLKATNVDGVYD 187 (267)
Q Consensus 157 ~~~sD~~Aa~lA~~l~Ad~Li~lTDVdGVy~ 187 (267)
+++=|++...+. .+ +=+++-+++|-|+
T Consensus 129 ~GTL~E~~eal~--~~--kPV~lln~~g~w~ 155 (195)
T 1rcu_A 129 IGTAIEILGAYA--LG--KPVILLRGTGGWT 155 (195)
T ss_dssp HHHHHHHHHHHH--TT--CCEEEETTSCHHH
T ss_pred CcHHHHHHHHHh--cC--CCEEEECCCCccH
Confidence 455577776665 33 3344446777775
No 99
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=20.47 E-value=98 Score=24.04 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCeEEEEECCchHHhhhHH
Q 024480 50 AIAREVASVTRLGIEVAIVVGGGNIFRGASA 80 (267)
Q Consensus 50 ~l~~~I~~l~~~g~~vViVhGgG~~~~~~~~ 80 (267)
.+.+.++.|.+++.+-|+|.||+.+...+..
T Consensus 106 ~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~ 136 (189)
T 2gd9_A 106 NILEEVNKLKKNPGKDIWLYGGASLITTFIN 136 (189)
T ss_dssp HHHHHHHHHHHSCCSEEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCeEEEEChHHHHHHHHH
Confidence 4555566777777777888887766544433
No 100
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=20.23 E-value=66 Score=26.10 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=29.5
Q ss_pred ceEEEEeccccccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Q 024480 24 QRVLLKVSGEALAGDHTQNIDPKITMAIAREVASVTRLGIEVAIVVGG 71 (267)
Q Consensus 24 ~~iVIKiGGs~l~~~~~~~~~~~~l~~l~~~I~~l~~~g~~vViVhGg 71 (267)
|.++.=+-|+++.++.. .+.+. ..+.|.++.+.|+++++++|-
T Consensus 3 kli~~DlDGTLl~~~~~-~i~~~----~~~al~~l~~~G~~~~iaTGR 45 (261)
T 2rbk_A 3 KALFFDIDGTLVSFETH-RIPSS----TIEALEAAHAKGLKIFIATGR 45 (261)
T ss_dssp CEEEECSBTTTBCTTTS-SCCHH----HHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEeCCCCCcCCCCC-cCCHH----HHHHHHHHHHCCCEEEEECCC
Confidence 77888899998765321 14443 445567777889999998753
No 101
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=20.08 E-value=97 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=9.6
Q ss_pred EEeeccCccccC
Q 024480 177 LKATNVDGVYDD 188 (267)
Q Consensus 177 i~lTDVdGVy~~ 188 (267)
.+++|+||.+..
T Consensus 3 ~i~~D~DGtL~~ 14 (263)
T 1zjj_A 3 AIIFDMDGVLYR 14 (263)
T ss_dssp EEEEECBTTTEE
T ss_pred EEEEeCcCceEe
Confidence 478899998864
Done!