BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024481
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
Length = 330
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 170/203 (83%)
Query: 65 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
+FPSKLFF+CE+EP GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+ E DD
Sbjct: 128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187
Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
+SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct: 188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247
Query: 185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct: 248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307
Query: 245 NLAVLHARRSSSRPRHILASLCK 267
N AVLH+RR PR +LASLCK
Sbjct: 308 NWAVLHSRRPFDPPRRVLASLCK 330
>pdb|1DRT|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And Proclavaminic Acid
pdb|1DRY|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And N-Alpha-L-Acetyl Arginine
pdb|1DS0|A Chain A, Crystal Structure Of Clavaminate Synthase
pdb|1DS1|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii) And 2-Oxoglutarate
pdb|1GVG|A Chain A, Crystal Structure Of Clavaminate Synthase With Nitric
Oxide
Length = 324
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 213 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 252
P ++ V L K L+E A+ + GD+L++DN HAR
Sbjct: 242 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHAR 281
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKI 178
T+P G G +++ + L E A+ L + M ++ VL P PA+TY I
Sbjct: 204 TTPNGNG-TNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTI 256
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKI 178
T+P G G +++ + L E A+ L + M ++ VL P PA+TY I
Sbjct: 204 TTPNGNG-TNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPAITYRTI 256
>pdb|1NX8|A Chain A, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|B Chain B, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|C Chain C, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
Length = 273
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 235 WQNGDVLLIDNLAVLHAR 252
W++GD+L++DN V+H R
Sbjct: 236 WEDGDLLIMDNRRVIHER 253
>pdb|3N6W|A Chain A, Crystal Structure Of Human Gamma-Butyrobetaine Hydroxylase
Length = 403
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 60 YMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRI 117
Y L P C + V+GGD+ +V V +++K++ P+ Q L + +T I
Sbjct: 221 YPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDI 278
>pdb|3MS5|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
pdb|3O2G|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
Length = 388
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 60 YMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRI 117
Y L P C + V+GGD+ +V V +++K++ P+ Q L + +T I
Sbjct: 206 YPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDI 263
>pdb|3EAT|X Chain X, Crystal Structure Of The Pvcb (Pa2255) Protein From
Pseudomonas Aeruginosa
Length = 293
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 235 WQNGDVLLIDNLAVLHARRSSSR--PRHI 261
W++ D+++ DNL +LH R + + PRH+
Sbjct: 246 WRSDDLVIADNLTLLHGREAFAHRAPRHL 274
>pdb|1NX4|A Chain A, The Crystal Structure Of Carbapenem Synthase (Carc)
pdb|1NX4|B Chain B, The Crystal Structure Of Carbapenem Synthase (Carc)
pdb|1NX4|C Chain C, The Crystal Structure Of Carbapenem Synthase (Carc)
Length = 273
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 235 WQNGDVLLIDNLAVLHAR 252
W++GD+L+ DN V+H R
Sbjct: 236 WEDGDLLIXDNRRVIHER 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,915,530
Number of Sequences: 62578
Number of extensions: 341062
Number of successful extensions: 685
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 14
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)