BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024481
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIG0|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana
GN=At3g21360 PE=1 SV=1
Length = 330
Score = 313 bits (801), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 170/203 (83%)
Query: 65 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDL 124
+FPSKLFF+CE+EP GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+ E DD
Sbjct: 128 EFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDP 187
Query: 125 TSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIW 184
+SP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+W
Sbjct: 188 SSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVW 247
Query: 185 FNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244
FNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLID
Sbjct: 248 FNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLID 307
Query: 245 NLAVLHARRSSSRPRHILASLCK 267
N AVLH+RR PR +LASLCK
Sbjct: 308 NWAVLHSRRPFDPPRRVLASLCK 330
>sp|P0A3T2|BCSP_BRUME 31 kDa immunogenic protein OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=bcsP31 PE=4 SV=1
Length = 329
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 169 PIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFG--NGSPYPEDIVYNLMKIL 226
PI DKI ++ +F+ V+ +KD P AV + P+D++YN+ K+L
Sbjct: 223 PISGPEADKILEKYSFFSKDVVPAGAYKDVAETPTLAVAAQWVTSAKQPDDLIYNITKVL 282
>sp|P0A3T3|BCSP_BRUAB 31 kDa immunogenic protein OS=Brucella abortus biovar 1 (strain
9-941) GN=bcsP31 PE=4 SV=1
Length = 329
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 169 PIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFG--NGSPYPEDIVYNLMKIL 226
PI DKI ++ +F+ V+ +KD P AV + P+D++YN+ K+L
Sbjct: 223 PISGPEADKILEKYSFFSKDVVPAGAYKDVAETPTLAVAAQWVTSAKQPDDLIYNITKVL 282
>sp|P53303|ZPR1_YEAST Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ZPR1 PE=1 SV=1
Length = 486
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 119 QEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDG 161
++K+DL P G + ED+S+AE+ AN G+KL +D
Sbjct: 3 EQKEDLFKPVGEAAAEV---EDESIAEQNKANDGVKLTGAQDA 42
>sp|Q05582|CAS2_STRC2 Clavaminate synthase 2 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs2 PE=1 SV=3
Length = 325
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 212 SPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 252
P ++ V +L + L++ V + GDVL+IDN HAR
Sbjct: 242 DPADKEAVAHLSQALDDVTVGVKLVPGDVLIIDNFRTTHAR 282
>sp|Q05581|CAS1_STRC2 Clavaminate synthase 1 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs1 PE=1 SV=3
Length = 324
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 213 PYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHAR 252
P ++ V L K L+E A+ + GD+L++DN HAR
Sbjct: 242 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHAR 281
>sp|Q09731|BU107_SCHPO UBP9-binding protein bun107 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bun107 PE=1 SV=1
Length = 962
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 55 LWLERYMLLPQFPSKLF--FFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGL 112
WL R +LL +FPSK ++P G PL IV E + S ++ +
Sbjct: 840 FWLGRLLLLNEFPSKTAPTVNFTLQPFPGSGLPL----IVNENTRLSASAMLRAQKIMDY 895
Query: 113 IYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERA 148
Y+++ Q++ D++S R K + +T +LA +A
Sbjct: 896 SYSKLSQQRKDVSSLQFR-CKDVVVTPKMTLATVKA 930
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,245,328
Number of Sequences: 539616
Number of extensions: 4436674
Number of successful extensions: 9170
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9163
Number of HSP's gapped (non-prelim): 10
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)